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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3465

Last change on this file since 3465 was 3448, checked in by kanani, 5 years ago
Implementation of human thermal indices (from branch biomet_p2 at r3444)
Property svn:keywords set to `Id`
File size: 31.6 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3448 2018-10-29 18:14:31Z kanani $
[3448]	27	! Adjustment of biometeorology calls
	28	!
	29	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	30	! Renamed output variables
	31	!
	32	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	33	! bugfix: nx, ny are required in non-parallel case
	34	!
	35	! 3337 2018-10-12 15:17:09Z kanani
[3337]	36	! (from branch resler)
	37	! Add Biometeorology
	38	!
	39	! 3294 2018-10-01 02:37:10Z raasch
[3294]	40	! changes concerning modularization of ocean option
	41	!
	42	! 3274 2018-09-24 15:42:55Z knoop
[3274]	43	! Modularization of all bulk cloud physics code components
	44	!
	45	! 3241 2018-09-12 15:02:00Z raasch
[3241]	46	! unused variables and format statements removed
	47	!
	48	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	49	! Error messages revised
	50	!
	51	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	52	! Error message revised
	53	!
	54	! 3014 2018-05-09 08:42:38Z maronga
[3014]	55	! Added nzb_do and nzt_do for some modules for 3d output
	56	!
	57	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	58	! Allocation checks implemented (averaged data will be assigned to fill values
	59	! if no allocation happened so far)
	60	!
	61	! 2967 2018-04-13 11:22:08Z raasch
[2967]	62	! bugfix: missing parallel cpp-directives added
	63	!
	64	! 2817 2018-02-19 16:32:21Z knoop
[2817]	65	! Preliminary gust module interface implemented
	66	!
	67	! 2766 2018-01-22 17:17:47Z kanani
[2766]	68	! Removed preprocessor directive __chem
	69	!
	70	! 2756 2018-01-16 18:11:14Z suehring
[2756]	71	! Fill values for 3D output of chemical species introduced.
	72	!
	73	! 2746 2018-01-15 12:06:04Z suehring
[2746]	74	! Move flag plant canopy to modules
	75	!
	76	! 2718 2018-01-02 08:49:38Z maronga
[2716]	77	! Corrected "Former revisions" section
	78	!
	79	! 2696 2017-12-14 17:12:51Z kanani
	80	! Change in file header (GPL part)
[2696]	81	! Implementation of turbulence_closure_mod (TG)
	82	! Implementation of chemistry module (FK)
	83	! Set fill values at topography grid points or e.g. non-natural-type surface
	84	! in case of LSM output (MS)
	85	!
	86	! 2512 2017-10-04 08:26:59Z raasch
[2512]	87	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	88	! no output of ghost layer data
	89	!
	90	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	91	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	92	! includes two more prognostic equations for cloud drop concentration (nc)
	93	! and cloud water content (qc).
	94	!
	95	! 2233 2017-05-30 18:08:54Z suehring
[1552]	96	!
[2233]	97	! 2232 2017-05-30 17:47:52Z suehring
	98	! Adjustments to new topography concept
	99	!
[2210]	100	! 2209 2017-04-19 09:34:46Z kanani
	101	! Added plant canopy model output
	102	!
[2032]	103	! 2031 2016-10-21 15:11:58Z knoop
	104	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	105	!
[2012]	106	! 2011 2016-09-19 17:29:57Z kanani
	107	! Flag urban_surface is now defined in module control_parameters,
	108	! changed prefix for urban surface model output to "usm_",
	109	! introduced control parameter varnamelength for LEN of trimvar.
	110	!
[2008]	111	! 2007 2016-08-24 15:47:17Z kanani
	112	! Added support for new urban surface model (temporary modifications of
	113	! SELECT CASE ( ) necessary, see variable trimvar)
	114	!
[2001]	115	! 2000 2016-08-20 18:09:15Z knoop
	116	! Forced header and separation lines into 80 columns
	117	!
[1981]	118	! 1980 2016-07-29 15:51:57Z suehring
	119	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	120	! to .F.
	121	!
[1977]	122	! 1976 2016-07-27 13:28:04Z maronga
	123	! Output of radiation quantities is now done directly in the respective module
	124	!
[1973]	125	! 1972 2016-07-26 07:52:02Z maronga
	126	! Output of land surface quantities is now done directly in the respective module.
	127	! Unnecessary directive __parallel removed.
	128	!
[1961]	129	! 1960 2016-07-12 16:34:24Z suehring
	130	! Scalar surface flux added
	131	!
[1851]	132	! 1849 2016-04-08 11:33:18Z hoffmann
	133	! prr moved to arrays_3d
	134	!
[1823]	135	! 1822 2016-04-07 07:49:42Z hoffmann
	136	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	137	!
[1809]	138	! 1808 2016-04-05 19:44:00Z raasch
	139	! test output removed
	140	!
[1784]	141	! 1783 2016-03-06 18:36:17Z raasch
	142	! name change of netcdf routines and module + related changes
	143	!
[1746]	144	! 1745 2016-02-05 13:06:51Z gronemeier
	145	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	146	!
[1692]	147	! 1691 2015-10-26 16:17:44Z maronga
	148	! Added output of radiative heating rates for RRTMG
	149	!
[1683]	150	! 1682 2015-10-07 23:56:08Z knoop
	151	! Code annotations made doxygen readable
	152	!
[1586]	153	! 1585 2015-04-30 07:05:52Z maronga
	154	! Added support for RRTMG
	155	!
[1552]	156	! 1551 2015-03-03 14:18:16Z maronga
[1551]	157	! Added suppport for land surface model and radiation model output. In the course
	158	! of this action, the limits for vertical loops have been changed (from nzb and
	159	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	160	! Moreover, a new vertical grid zs was introduced.
[1329]	161	!
[1360]	162	! 1359 2014-04-11 17:15:14Z hoffmann
	163	! New particle structure integrated.
	164	!
[1354]	165	! 1353 2014-04-08 15:21:23Z heinze
	166	! REAL constants provided with KIND-attribute
	167	!
[1329]	168	! 1327 2014-03-21 11:00:16Z raasch
	169	! parts concerning avs output removed,
	170	! -netcdf output queries
	171	!
[1321]	172	! 1320 2014-03-20 08:40:49Z raasch
[1320]	173	! ONLY-attribute added to USE-statements,
	174	! kind-parameters added to all INTEGER and REAL declaration statements,
	175	! kinds are defined in new module kinds,
	176	! old module precision_kind is removed,
	177	! revision history before 2012 removed,
	178	! comment fields (!:) to be used for variable explanations added to
	179	! all variable declaration statements
[674]	180	!
[1319]	181	! 1318 2014-03-17 13:35:16Z raasch
	182	! barrier argument removed from cpu_log,
	183	! module interfaces removed
	184	!
[1309]	185	! 1308 2014-03-13 14:58:42Z fricke
	186	! Check, if the limit of the time dimension is exceeded for parallel output
	187	! To increase the performance for parallel output, the following is done:
	188	! - Update of time axis is only done by PE0
	189	!
[1245]	190	! 1244 2013-10-31 08:16:56Z raasch
	191	! Bugfix for index bounds in case of 3d-parallel output
	192	!
[1116]	193	! 1115 2013-03-26 18:16:16Z hoffmann
	194	! ql is calculated by calc_liquid_water_content
	195	!
[1107]	196	! 1106 2013-03-04 05:31:38Z raasch
	197	! array_kind renamed precision_kind
	198	!
[1077]	199	! 1076 2012-12-05 08:30:18Z hoffmann
	200	! Bugfix in output of ql
	201	!
[1054]	202	! 1053 2012-11-13 17:11:03Z hoffmann
	203	! +nr, qr, prr, qc and averaged quantities
	204	!
[1037]	205	! 1036 2012-10-22 13:43:42Z raasch
	206	! code put under GPL (PALM 3.9)
	207	!
[1035]	208	! 1031 2012-10-19 14:35:30Z raasch
	209	! netCDF4 without parallel file support implemented
	210	!
[1008]	211	! 1007 2012-09-19 14:30:36Z franke
	212	! Bugfix: missing calculation of ql_vp added
	213	!
[1]	214	! Revision 1.1 1997/09/03 06:29:36 raasch
	215	! Initial revision
	216	!
	217	!
	218	! Description:
	219	! ------------
[1682]	220	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	221	!------------------------------------------------------------------------------!
[1682]	222	SUBROUTINE data_output_3d( av )
	223
[1]	224
[1320]	225	USE arrays_3d, &
[3294]	226	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	227	tend, u, v, vpt, w
[3274]	228
[1]	229	USE averaging
[3274]	230
	231	USE basic_constants_and_equations_mod, &
	232	ONLY: lv_d_cp
	233
[3448]	234	USE biometeorology_mod, &
	235	ONLY: biom_data_output_3d
	236
[3274]	237	USE bulk_cloud_model_mod, &
	238	ONLY: bulk_cloud_model, bcm_data_output_3d
	239
[2696]	240	USE chemistry_model_mod, &
	241	ONLY: chem_data_output_3d
	242
[1320]	243	USE control_parameters, &
[3448]	244	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
[2696]	245	io_blocks, io_group, land_surface, message_string, &
[3294]	246	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[2232]	247	psolver, simulated_time, time_since_reference_point, &
	248	urban_surface, varnamelength
[3274]	249
[1320]	250	USE cpulog, &
	251	ONLY: log_point, cpu_log
[2817]	252
	253	USE gust_mod, &
	254	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	255
[3405]	256	#if defined( __parallel )
[1320]	257	USE indices, &
[3241]	258	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	259	wall_flags_0
[3405]	260	#else
	261	USE indices, &
	262	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	263	nzt, wall_flags_0
	264	#endif
[3274]	265
[1320]	266	USE kinds
[3274]	267
[1551]	268	USE land_surface_model_mod, &
[2232]	269	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	270
[1783]	271	#if defined( __netcdf )
	272	USE NETCDF
	273	#endif
	274
	275	USE netcdf_interface, &
[2696]	276	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	277	netcdf_data_format, netcdf_handle_error
[1320]	278
[3294]	279	USE ocean_mod, &
	280	ONLY: ocean_data_output_3d
	281
[1320]	282	USE particle_attributes, &
[1359]	283	ONLY: grid_particles, number_of_particles, particles, &
	284	particle_advection_start, prt_count
[1320]	285
[1]	286	USE pegrid
	287
[2209]	288	USE plant_canopy_model_mod, &
[2746]	289	ONLY: pcm_data_output_3d
[2209]	290
[1585]	291	USE radiation_model_mod, &
[2696]	292	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	293
[2696]	294	USE turbulence_closure_mod, &
	295	ONLY: tcm_data_output_3d
	296
[2007]	297	USE urban_surface_mod, &
[2696]	298	ONLY: usm_data_output_3d
[1585]	299
[2007]	300
[1]	301	IMPLICIT NONE
	302
[1682]	303	INTEGER(iwp) :: av !<
[2696]	304	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	305	INTEGER(iwp) :: i !<
	306	INTEGER(iwp) :: if !<
	307	INTEGER(iwp) :: j !<
	308	INTEGER(iwp) :: k !<
	309	INTEGER(iwp) :: n !<
	310	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	311	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	312
[1682]	313	LOGICAL :: found !<
	314	LOGICAL :: resorted !<
[1]	315
[1682]	316	REAL(wp) :: mean_r !<
	317	REAL(wp) :: s_r2 !<
	318	REAL(wp) :: s_r3 !<
[1]	319
[1682]	320	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	321
[1682]	322	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	323
[2011]	324	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	325
[1]	326	!
	327	!-- Return, if nothing to output
	328	IF ( do3d_no(av) == 0 ) RETURN
	329
	330	CALL cpu_log (log_point(14),'data_output_3d','start')
	331
	332	!
	333	!-- Open output file.
[2512]	334	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	335	!-- own file and writes the data of its subdomain in binary format. After the
	336	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	337	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	338	IF ( netcdf_data_format < 5 ) THEN
[2967]	339	#if defined( __parallel )
[1327]	340	CALL check_open( 30 )
[2967]	341	#endif
[1327]	342	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	343	ELSE
[1327]	344	CALL check_open( 106+av*10 )
[493]	345	ENDIF
[1]	346
	347	!
[1745]	348	!-- For parallel netcdf output the time axis must be limited. Return, if this
	349	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	350	!-- the given end time by the length of the given output interval.
	351	IF ( netcdf_data_format > 4 ) THEN
	352	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	353	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	354	simulated_time, '&because the maximum ', &
[1745]	355	'number of output time levels is ', &
	356	'exceeded.'
	357	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	358	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	359	RETURN
	360	ENDIF
	361	ENDIF
	362
	363	!
[1031]	364	!-- Update the netCDF time axis
[1308]	365	!-- In case of parallel output, this is only done by PE0 to increase the
	366	!-- performance.
[1]	367	#if defined( __netcdf )
[1308]	368	do3d_time_count(av) = do3d_time_count(av) + 1
	369	IF ( myid == 0 ) THEN
[1327]	370	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	371	(/ time_since_reference_point /), &
	372	start = (/ do3d_time_count(av) /), &
	373	count = (/ 1 /) )
[1783]	374	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	375	ENDIF
	376	#endif
	377
	378	!
	379	!-- Loop over all variables to be written.
	380	if = 1
	381
	382	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	383
[1]	384	!
[2007]	385	!-- Temporary solution to account for data output within the new urban
	386	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	387	!-- Store the array chosen on the temporary array.
[2007]	388	trimvar = TRIM( do3d(av,if) )
[2011]	389	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	390	trimvar = 'usm_output'
	391	resorted = .TRUE.
	392	nzb_do = nzub
	393	nzt_do = nzut
	394	ELSE
	395	resorted = .FALSE.
	396	nzb_do = nzb
	397	nzt_do = nz_do3d
	398	ENDIF
[1551]	399	!
[1980]	400	!-- Set flag to steer output of radiation, land-surface, or user-defined
	401	!-- quantities
	402	found = .FALSE.
	403	!
[1551]	404	!-- Allocate a temporary array with the desired output dimensions.
[2512]	405	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	406	!
	407	!-- Before each output, set array local_pf to fill value
	408	local_pf = fill_value
	409	!
	410	!-- Set masking flag for topography for not resorted arrays
	411	flag_nr = 0
[1551]	412
[2007]	413	SELECT CASE ( trimvar )
[1]	414
	415	CASE ( 'e' )
	416	IF ( av == 0 ) THEN
	417	to_be_resorted => e
	418	ELSE
[3004]	419	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	420	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	421	e_av = REAL( fill_value, KIND = wp )
	422	ENDIF
[1]	423	to_be_resorted => e_av
	424	ENDIF
	425
[3421]	426	CASE ( 'thetal' )
[771]	427	IF ( av == 0 ) THEN
	428	to_be_resorted => pt
	429	ELSE
[3004]	430	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	431	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	432	lpt_av = REAL( fill_value, KIND = wp )
	433	ENDIF
[771]	434	to_be_resorted => lpt_av
	435	ENDIF
	436
[1]	437	CASE ( 'p' )
	438	IF ( av == 0 ) THEN
[727]	439	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	440	to_be_resorted => p
	441	ELSE
[3004]	442	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	443	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	444	p_av = REAL( fill_value, KIND = wp )
	445	ENDIF
[727]	446	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	447	to_be_resorted => p_av
	448	ENDIF
	449
	450	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	451	IF ( av == 0 ) THEN
[1359]	452	IF ( simulated_time >= particle_advection_start ) THEN
	453	tend = prt_count
	454	ELSE
	455	tend = 0.0_wp
	456	ENDIF
[2512]	457	DO i = nxl, nxr
	458	DO j = nys, nyn
[1551]	459	DO k = nzb_do, nzt_do
[1]	460	local_pf(i,j,k) = tend(k,j,i)
	461	ENDDO
	462	ENDDO
	463	ENDDO
	464	resorted = .TRUE.
	465	ELSE
[3004]	466	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	467	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	468	pc_av = REAL( fill_value, KIND = wp )
	469	ENDIF
[1]	470	to_be_resorted => pc_av
	471	ENDIF
	472
[1359]	473	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	474	IF ( av == 0 ) THEN
[1359]	475	IF ( simulated_time >= particle_advection_start ) THEN
	476	DO i = nxl, nxr
	477	DO j = nys, nyn
[1551]	478	DO k = nzb_do, nzt_do
[1359]	479	number_of_particles = prt_count(k,j,i)
	480	IF (number_of_particles <= 0) CYCLE
	481	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	482	s_r2 = 0.0_wp
	483	s_r3 = 0.0_wp
	484	DO n = 1, number_of_particles
	485	IF ( particles(n)%particle_mask ) THEN
	486	s_r2 = s_r2 + particles(n)%radius*2 &
	487	particles(n)%weight_factor
	488	s_r3 = s_r3 + particles(n)%radius*3 &
	489	particles(n)%weight_factor
	490	ENDIF
	491	ENDDO
	492	IF ( s_r2 > 0.0_wp ) THEN
	493	mean_r = s_r3 / s_r2
	494	ELSE
	495	mean_r = 0.0_wp
	496	ENDIF
	497	tend(k,j,i) = mean_r
[1]	498	ENDDO
	499	ENDDO
	500	ENDDO
[1359]	501	ELSE
	502	tend = 0.0_wp
	503	ENDIF
[2512]	504	DO i = nxl, nxr
	505	DO j = nys, nyn
[1551]	506	DO k = nzb_do, nzt_do
[1]	507	local_pf(i,j,k) = tend(k,j,i)
	508	ENDDO
	509	ENDDO
	510	ENDDO
	511	resorted = .TRUE.
	512	ELSE
[3004]	513	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	514	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	515	pr_av = REAL( fill_value, KIND = wp )
	516	ENDIF
[1]	517	to_be_resorted => pr_av
	518	ENDIF
	519
[3421]	520	CASE ( 'theta' )
[1]	521	IF ( av == 0 ) THEN
[3274]	522	IF ( .NOT. bulk_cloud_model ) THEN
[1]	523	to_be_resorted => pt
	524	ELSE
[2512]	525	DO i = nxl, nxr
	526	DO j = nys, nyn
[1551]	527	DO k = nzb_do, nzt_do
[3274]	528	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	529	d_exner(k) * &
[1]	530	ql(k,j,i)
	531	ENDDO
	532	ENDDO
	533	ENDDO
	534	resorted = .TRUE.
	535	ENDIF
	536	ELSE
[3004]	537	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	538	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	539	pt_av = REAL( fill_value, KIND = wp )
	540	ENDIF
[1]	541	to_be_resorted => pt_av
	542	ENDIF
	543
	544	CASE ( 'q' )
	545	IF ( av == 0 ) THEN
	546	to_be_resorted => q
	547	ELSE
[3004]	548	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	549	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	550	q_av = REAL( fill_value, KIND = wp )
	551	ENDIF
[1]	552	to_be_resorted => q_av
	553	ENDIF
[691]	554
[1053]	555	CASE ( 'ql' )
	556	IF ( av == 0 ) THEN
[1115]	557	to_be_resorted => ql
[1053]	558	ELSE
[3004]	559	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	560	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	561	ql_av = REAL( fill_value, KIND = wp )
	562	ENDIF
[1115]	563	to_be_resorted => ql_av
[1053]	564	ENDIF
	565
[1]	566	CASE ( 'ql_c' )
	567	IF ( av == 0 ) THEN
	568	to_be_resorted => ql_c
	569	ELSE
[3004]	570	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	571	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	572	ql_c_av = REAL( fill_value, KIND = wp )
	573	ENDIF
[1]	574	to_be_resorted => ql_c_av
	575	ENDIF
	576
	577	CASE ( 'ql_v' )
	578	IF ( av == 0 ) THEN
	579	to_be_resorted => ql_v
	580	ELSE
[3004]	581	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	582	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	583	ql_v_av = REAL( fill_value, KIND = wp )
	584	ENDIF
[1]	585	to_be_resorted => ql_v_av
	586	ENDIF
	587
	588	CASE ( 'ql_vp' )
	589	IF ( av == 0 ) THEN
[1359]	590	IF ( simulated_time >= particle_advection_start ) THEN
	591	DO i = nxl, nxr
	592	DO j = nys, nyn
[1551]	593	DO k = nzb_do, nzt_do
[1359]	594	number_of_particles = prt_count(k,j,i)
	595	IF (number_of_particles <= 0) CYCLE
	596	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	597	DO n = 1, number_of_particles
	598	IF ( particles(n)%particle_mask ) THEN
	599	tend(k,j,i) = tend(k,j,i) + &
	600	particles(n)%weight_factor / &
	601	prt_count(k,j,i)
	602	ENDIF
	603	ENDDO
[1007]	604	ENDDO
	605	ENDDO
	606	ENDDO
[1359]	607	ELSE
	608	tend = 0.0_wp
	609	ENDIF
[2512]	610	DO i = nxl, nxr
	611	DO j = nys, nyn
[1551]	612	DO k = nzb_do, nzt_do
[1007]	613	local_pf(i,j,k) = tend(k,j,i)
	614	ENDDO
	615	ENDDO
	616	ENDDO
	617	resorted = .TRUE.
[1]	618	ELSE
[3004]	619	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	620	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	621	ql_vp_av = REAL( fill_value, KIND = wp )
	622	ENDIF
[1]	623	to_be_resorted => ql_vp_av
	624	ENDIF
	625
	626	CASE ( 'qv' )
	627	IF ( av == 0 ) THEN
[2512]	628	DO i = nxl, nxr
	629	DO j = nys, nyn
[1551]	630	DO k = nzb_do, nzt_do
[1]	631	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	632	ENDDO
	633	ENDDO
	634	ENDDO
	635	resorted = .TRUE.
	636	ELSE
[3004]	637	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	638	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	639	qv_av = REAL( fill_value, KIND = wp )
	640	ENDIF
[1]	641	to_be_resorted => qv_av
	642	ENDIF
	643
	644	CASE ( 's' )
	645	IF ( av == 0 ) THEN
[1960]	646	to_be_resorted => s
[1]	647	ELSE
[3004]	648	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	649	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	650	s_av = REAL( fill_value, KIND = wp )
	651	ENDIF
[355]	652	to_be_resorted => s_av
[1]	653	ENDIF
[691]	654
[1]	655	CASE ( 'u' )
[2696]	656	flag_nr = 1
[1]	657	IF ( av == 0 ) THEN
	658	to_be_resorted => u
	659	ELSE
[3004]	660	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	661	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	662	u_av = REAL( fill_value, KIND = wp )
	663	ENDIF
[1]	664	to_be_resorted => u_av
	665	ENDIF
	666
	667	CASE ( 'v' )
[2696]	668	flag_nr = 2
[1]	669	IF ( av == 0 ) THEN
	670	to_be_resorted => v
	671	ELSE
[3004]	672	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	673	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	674	v_av = REAL( fill_value, KIND = wp )
	675	ENDIF
[1]	676	to_be_resorted => v_av
	677	ENDIF
	678
[3421]	679	CASE ( 'thetav' )
[1]	680	IF ( av == 0 ) THEN
	681	to_be_resorted => vpt
	682	ELSE
[3004]	683	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	684	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	685	vpt_av = REAL( fill_value, KIND = wp )
	686	ENDIF
[1]	687	to_be_resorted => vpt_av
	688	ENDIF
	689
	690	CASE ( 'w' )
[2696]	691	flag_nr = 3
[1]	692	IF ( av == 0 ) THEN
	693	to_be_resorted => w
	694	ELSE
[3004]	695	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	696	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	697	w_av = REAL( fill_value, KIND = wp )
	698	ENDIF
[1]	699	to_be_resorted => w_av
	700	ENDIF
[2007]	701	!
	702	!-- Block of urban surface model outputs
	703	CASE ( 'usm_output' )
[3274]	704	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
[2007]	705	nzb_do, nzt_do )
[1]	706
	707	CASE DEFAULT
[1972]	708
[1]	709	!
[3294]	710	!-- Quantities of other modules
[3274]	711	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
	712	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	713	nzb_do, nzt_do )
	714	resorted = .TRUE.
	715	ENDIF
	716
[3294]	717	IF ( .NOT. found .AND. air_chemistry ) THEN
	718	CALL chem_data_output_3d( av, do3d(av,if), found, &
	719	local_pf, fill_value, nzb_do, nzt_do )
	720	resorted = .TRUE.
	721	ENDIF
	722
	723	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	724	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	725	nzb_do, nzt_do )
	726	resorted = .TRUE.
	727	ENDIF
	728
[3274]	729	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	730	!
	731	!-- For soil model quantities, it is required to re-allocate local_pf
	732	nzb_do = nzb_soil
	733	nzt_do = nzt_soil
	734
	735	DEALLOCATE ( local_pf )
[2512]	736	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	737	local_pf = fill_value
[1972]	738
	739	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	740	resorted = .TRUE.
[1976]	741
	742	!
	743	!-- If no soil model variable was found, re-allocate local_pf
	744	IF ( .NOT. found ) THEN
	745	nzb_do = nzb
	746	nzt_do = nz_do3d
	747
	748	DEALLOCATE ( local_pf )
[2512]	749	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	750	ENDIF
	751
[1972]	752	ENDIF
	753
[3294]	754	IF ( .NOT. found .AND. ocean_mode ) THEN
	755	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
	756	nzb_do, nzt_do )
[1976]	757	resorted = .TRUE.
	758	ENDIF
	759
[3294]	760	IF ( .NOT. found .AND. plant_canopy ) THEN
	761	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	762	fill_value, nzb_do, nzt_do )
[2817]	763	resorted = .TRUE.
	764	ENDIF
	765
[3294]	766	IF ( .NOT. found .AND. radiation ) THEN
	767	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	768	local_pf, nzb_do, nzt_do )
[2696]	769	resorted = .TRUE.
	770	ENDIF
	771
[3294]	772	IF ( .NOT. found ) THEN
	773	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	774	nzb_do, nzt_do )
[2209]	775	resorted = .TRUE.
	776	ENDIF
	777
[3448]	778	IF ( .NOT. found .AND. biometeorology ) THEN
	779	CALL biom_data_output_3d( av, do3d(av,if), found, local_pf, &
	780	nzb_do, nzt_do )
	781	ENDIF
	782
[2209]	783	!
[3294]	784	!-- User defined quantities
[1972]	785	IF ( .NOT. found ) THEN
	786	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	787	nzb_do, nzt_do )
	788	resorted = .TRUE.
	789	ENDIF
[1]	790
[254]	791	IF ( .NOT. found ) THEN
[1320]	792	message_string = 'no output available for: ' // &
[274]	793	TRIM( do3d(av,if) )
[254]	794	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	795	ENDIF
	796
	797	END SELECT
	798
	799	!
	800	!-- Resort the array to be output, if not done above
	801	IF ( .NOT. resorted ) THEN
[2512]	802	DO i = nxl, nxr
	803	DO j = nys, nyn
[1551]	804	DO k = nzb_do, nzt_do
[2696]	805	local_pf(i,j,k) = MERGE( &
	806	to_be_resorted(k,j,i), &
	807	REAL( fill_value, KIND = wp ), &
	808	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	809	ENDDO
	810	ENDDO
	811	ENDDO
	812	ENDIF
	813
	814	!
[1327]	815	!-- Output of the 3D-array
	816	#if defined( __parallel )
	817	IF ( netcdf_data_format < 5 ) THEN
[1]	818	!
[1327]	819	!-- Non-parallel netCDF output. Data is output in parallel in
	820	!-- FORTRAN binary format here, and later collected into one file by
	821	!-- combine_plot_fields
	822	IF ( myid == 0 ) THEN
	823	WRITE ( 30 ) time_since_reference_point, &
	824	do3d_time_count(av), av
[1]	825	ENDIF
[1327]	826	DO i = 0, io_blocks-1
	827	IF ( i == io_group ) THEN
[2512]	828	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	829	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	830	ENDIF
[1972]	831
[1327]	832	CALL MPI_BARRIER( comm2d, ierr )
[1972]	833
[1327]	834	ENDDO
[559]	835
[1327]	836	ELSE
[646]	837	#if defined( __netcdf )
[493]	838	!
[1327]	839	!-- Parallel output in netCDF4/HDF5 format.
[2512]	840	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	841	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	842	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	843	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	844	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	845	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	846	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	847	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	848	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	849	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	850	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	851	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	852	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	853	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	854	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	855	! ELSE
[1327]	856	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	857	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	858	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	859	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	860	! ENDIF
[1783]	861	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	862	#endif
[1327]	863	ENDIF
[1]	864	#else
	865	#if defined( __netcdf )
[1327]	866	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	867	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	868	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	869	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	870	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	871	#endif
	872	#endif
	873
	874	if = if + 1
	875
	876	!
[1551]	877	!-- Deallocate temporary array
	878	DEALLOCATE ( local_pf )
[1]	879
[1551]	880	ENDDO
[1]	881
[1318]	882	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	883
	884	END SUBROUTINE data_output_3d

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