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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3424

Last change on this file since 3424 was 3421, checked in by gronemeier, 6 years ago
new surface-data output; renamed output variables (pt to theta, rho_air to rho, rho_ocean to rho_sea_water)
Property svn:keywords set to `Id`
File size: 31.6 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3421 2018-10-24 18:39:32Z gronemeier $
[3421]	27	! Renamed output variables
	28	!
	29	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	30	! bugfix: nx, ny are required in non-parallel case
	31	!
	32	! 3337 2018-10-12 15:17:09Z kanani
[3337]	33	! (from branch resler)
	34	! Add Biometeorology
	35	!
	36	! 3294 2018-10-01 02:37:10Z raasch
[3294]	37	! changes concerning modularization of ocean option
	38	!
	39	! 3274 2018-09-24 15:42:55Z knoop
[3274]	40	! Modularization of all bulk cloud physics code components
	41	!
	42	! 3241 2018-09-12 15:02:00Z raasch
[3241]	43	! unused variables and format statements removed
	44	!
	45	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	46	! Error messages revised
	47	!
	48	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	49	! Error message revised
	50	!
	51	! 3014 2018-05-09 08:42:38Z maronga
[3014]	52	! Added nzb_do and nzt_do for some modules for 3d output
	53	!
	54	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	55	! Allocation checks implemented (averaged data will be assigned to fill values
	56	! if no allocation happened so far)
	57	!
	58	! 2967 2018-04-13 11:22:08Z raasch
[2967]	59	! bugfix: missing parallel cpp-directives added
	60	!
	61	! 2817 2018-02-19 16:32:21Z knoop
[2817]	62	! Preliminary gust module interface implemented
	63	!
	64	! 2766 2018-01-22 17:17:47Z kanani
[2766]	65	! Removed preprocessor directive __chem
	66	!
	67	! 2756 2018-01-16 18:11:14Z suehring
[2756]	68	! Fill values for 3D output of chemical species introduced.
	69	!
	70	! 2746 2018-01-15 12:06:04Z suehring
[2746]	71	! Move flag plant canopy to modules
	72	!
	73	! 2718 2018-01-02 08:49:38Z maronga
[2716]	74	! Corrected "Former revisions" section
	75	!
	76	! 2696 2017-12-14 17:12:51Z kanani
	77	! Change in file header (GPL part)
[2696]	78	! Implementation of turbulence_closure_mod (TG)
	79	! Implementation of chemistry module (FK)
	80	! Set fill values at topography grid points or e.g. non-natural-type surface
	81	! in case of LSM output (MS)
	82	!
	83	! 2512 2017-10-04 08:26:59Z raasch
[2512]	84	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	85	! no output of ghost layer data
	86	!
	87	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	88	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	89	! includes two more prognostic equations for cloud drop concentration (nc)
	90	! and cloud water content (qc).
	91	!
	92	! 2233 2017-05-30 18:08:54Z suehring
[1552]	93	!
[2233]	94	! 2232 2017-05-30 17:47:52Z suehring
	95	! Adjustments to new topography concept
	96	!
[2210]	97	! 2209 2017-04-19 09:34:46Z kanani
	98	! Added plant canopy model output
	99	!
[2032]	100	! 2031 2016-10-21 15:11:58Z knoop
	101	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	102	!
[2012]	103	! 2011 2016-09-19 17:29:57Z kanani
	104	! Flag urban_surface is now defined in module control_parameters,
	105	! changed prefix for urban surface model output to "usm_",
	106	! introduced control parameter varnamelength for LEN of trimvar.
	107	!
[2008]	108	! 2007 2016-08-24 15:47:17Z kanani
	109	! Added support for new urban surface model (temporary modifications of
	110	! SELECT CASE ( ) necessary, see variable trimvar)
	111	!
[2001]	112	! 2000 2016-08-20 18:09:15Z knoop
	113	! Forced header and separation lines into 80 columns
	114	!
[1981]	115	! 1980 2016-07-29 15:51:57Z suehring
	116	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	117	! to .F.
	118	!
[1977]	119	! 1976 2016-07-27 13:28:04Z maronga
	120	! Output of radiation quantities is now done directly in the respective module
	121	!
[1973]	122	! 1972 2016-07-26 07:52:02Z maronga
	123	! Output of land surface quantities is now done directly in the respective module.
	124	! Unnecessary directive __parallel removed.
	125	!
[1961]	126	! 1960 2016-07-12 16:34:24Z suehring
	127	! Scalar surface flux added
	128	!
[1851]	129	! 1849 2016-04-08 11:33:18Z hoffmann
	130	! prr moved to arrays_3d
	131	!
[1823]	132	! 1822 2016-04-07 07:49:42Z hoffmann
	133	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	134	!
[1809]	135	! 1808 2016-04-05 19:44:00Z raasch
	136	! test output removed
	137	!
[1784]	138	! 1783 2016-03-06 18:36:17Z raasch
	139	! name change of netcdf routines and module + related changes
	140	!
[1746]	141	! 1745 2016-02-05 13:06:51Z gronemeier
	142	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	143	!
[1692]	144	! 1691 2015-10-26 16:17:44Z maronga
	145	! Added output of radiative heating rates for RRTMG
	146	!
[1683]	147	! 1682 2015-10-07 23:56:08Z knoop
	148	! Code annotations made doxygen readable
	149	!
[1586]	150	! 1585 2015-04-30 07:05:52Z maronga
	151	! Added support for RRTMG
	152	!
[1552]	153	! 1551 2015-03-03 14:18:16Z maronga
[1551]	154	! Added suppport for land surface model and radiation model output. In the course
	155	! of this action, the limits for vertical loops have been changed (from nzb and
	156	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	157	! Moreover, a new vertical grid zs was introduced.
[1329]	158	!
[1360]	159	! 1359 2014-04-11 17:15:14Z hoffmann
	160	! New particle structure integrated.
	161	!
[1354]	162	! 1353 2014-04-08 15:21:23Z heinze
	163	! REAL constants provided with KIND-attribute
	164	!
[1329]	165	! 1327 2014-03-21 11:00:16Z raasch
	166	! parts concerning avs output removed,
	167	! -netcdf output queries
	168	!
[1321]	169	! 1320 2014-03-20 08:40:49Z raasch
[1320]	170	! ONLY-attribute added to USE-statements,
	171	! kind-parameters added to all INTEGER and REAL declaration statements,
	172	! kinds are defined in new module kinds,
	173	! old module precision_kind is removed,
	174	! revision history before 2012 removed,
	175	! comment fields (!:) to be used for variable explanations added to
	176	! all variable declaration statements
[674]	177	!
[1319]	178	! 1318 2014-03-17 13:35:16Z raasch
	179	! barrier argument removed from cpu_log,
	180	! module interfaces removed
	181	!
[1309]	182	! 1308 2014-03-13 14:58:42Z fricke
	183	! Check, if the limit of the time dimension is exceeded for parallel output
	184	! To increase the performance for parallel output, the following is done:
	185	! - Update of time axis is only done by PE0
	186	!
[1245]	187	! 1244 2013-10-31 08:16:56Z raasch
	188	! Bugfix for index bounds in case of 3d-parallel output
	189	!
[1116]	190	! 1115 2013-03-26 18:16:16Z hoffmann
	191	! ql is calculated by calc_liquid_water_content
	192	!
[1107]	193	! 1106 2013-03-04 05:31:38Z raasch
	194	! array_kind renamed precision_kind
	195	!
[1077]	196	! 1076 2012-12-05 08:30:18Z hoffmann
	197	! Bugfix in output of ql
	198	!
[1054]	199	! 1053 2012-11-13 17:11:03Z hoffmann
	200	! +nr, qr, prr, qc and averaged quantities
	201	!
[1037]	202	! 1036 2012-10-22 13:43:42Z raasch
	203	! code put under GPL (PALM 3.9)
	204	!
[1035]	205	! 1031 2012-10-19 14:35:30Z raasch
	206	! netCDF4 without parallel file support implemented
	207	!
[1008]	208	! 1007 2012-09-19 14:30:36Z franke
	209	! Bugfix: missing calculation of ql_vp added
	210	!
[1]	211	! Revision 1.1 1997/09/03 06:29:36 raasch
	212	! Initial revision
	213	!
	214	!
	215	! Description:
	216	! ------------
[1682]	217	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	218	!------------------------------------------------------------------------------!
[1682]	219	SUBROUTINE data_output_3d( av )
	220
[1]	221
[1320]	222	USE arrays_3d, &
[3294]	223	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	224	tend, u, v, vpt, w
[3274]	225
[1]	226	USE averaging
[3274]	227
	228	USE basic_constants_and_equations_mod, &
	229	ONLY: lv_d_cp
	230
	231	USE bulk_cloud_model_mod, &
	232	ONLY: bulk_cloud_model, bcm_data_output_3d
	233
[2696]	234	USE chemistry_model_mod, &
	235	ONLY: chem_data_output_3d
	236
[1320]	237	USE control_parameters, &
[3274]	238	ONLY: air_chemistry, do3d, do3d_no, do3d_time_count, &
[2696]	239	io_blocks, io_group, land_surface, message_string, &
[3294]	240	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[2232]	241	psolver, simulated_time, time_since_reference_point, &
	242	urban_surface, varnamelength
[3274]	243
[1320]	244	USE cpulog, &
	245	ONLY: log_point, cpu_log
[2817]	246
	247	USE gust_mod, &
	248	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	249
[3405]	250	#if defined( __parallel )
[1320]	251	USE indices, &
[3241]	252	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	253	wall_flags_0
[3405]	254	#else
	255	USE indices, &
	256	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	257	nzt, wall_flags_0
	258	#endif
[3274]	259
[1320]	260	USE kinds
[3274]	261
[1551]	262	USE land_surface_model_mod, &
[2232]	263	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	264
[1783]	265	#if defined( __netcdf )
	266	USE NETCDF
	267	#endif
	268
	269	USE netcdf_interface, &
[2696]	270	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	271	netcdf_data_format, netcdf_handle_error
[1320]	272
[3294]	273	USE ocean_mod, &
	274	ONLY: ocean_data_output_3d
	275
[1320]	276	USE particle_attributes, &
[1359]	277	ONLY: grid_particles, number_of_particles, particles, &
	278	particle_advection_start, prt_count
[1320]	279
[1]	280	USE pegrid
	281
[2209]	282	USE plant_canopy_model_mod, &
[2746]	283	ONLY: pcm_data_output_3d
[2209]	284
[1585]	285	USE radiation_model_mod, &
[2696]	286	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	287
[3337]	288	USE biometeorology_mod, &
	289	ONLY: biometeorology_data_output_3d
	290
[2696]	291	USE turbulence_closure_mod, &
	292	ONLY: tcm_data_output_3d
	293
[2007]	294	USE urban_surface_mod, &
[2696]	295	ONLY: usm_data_output_3d
[1585]	296
[2007]	297
[1]	298	IMPLICIT NONE
	299
[1682]	300	INTEGER(iwp) :: av !<
[2696]	301	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	302	INTEGER(iwp) :: i !<
	303	INTEGER(iwp) :: if !<
	304	INTEGER(iwp) :: j !<
	305	INTEGER(iwp) :: k !<
	306	INTEGER(iwp) :: n !<
	307	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	308	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	309
[1682]	310	LOGICAL :: found !<
	311	LOGICAL :: resorted !<
[1]	312
[1682]	313	REAL(wp) :: mean_r !<
	314	REAL(wp) :: s_r2 !<
	315	REAL(wp) :: s_r3 !<
[1]	316
[1682]	317	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	318
[1682]	319	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	320
[2011]	321	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	322
[1]	323	!
	324	!-- Return, if nothing to output
	325	IF ( do3d_no(av) == 0 ) RETURN
	326
	327	CALL cpu_log (log_point(14),'data_output_3d','start')
	328
	329	!
	330	!-- Open output file.
[2512]	331	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	332	!-- own file and writes the data of its subdomain in binary format. After the
	333	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	334	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	335	IF ( netcdf_data_format < 5 ) THEN
[2967]	336	#if defined( __parallel )
[1327]	337	CALL check_open( 30 )
[2967]	338	#endif
[1327]	339	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	340	ELSE
[1327]	341	CALL check_open( 106+av*10 )
[493]	342	ENDIF
[1]	343
	344	!
[1745]	345	!-- For parallel netcdf output the time axis must be limited. Return, if this
	346	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	347	!-- the given end time by the length of the given output interval.
	348	IF ( netcdf_data_format > 4 ) THEN
	349	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	350	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	351	simulated_time, '&because the maximum ', &
[1745]	352	'number of output time levels is ', &
	353	'exceeded.'
	354	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	355	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	356	RETURN
	357	ENDIF
	358	ENDIF
	359
	360	!
[1031]	361	!-- Update the netCDF time axis
[1308]	362	!-- In case of parallel output, this is only done by PE0 to increase the
	363	!-- performance.
[1]	364	#if defined( __netcdf )
[1308]	365	do3d_time_count(av) = do3d_time_count(av) + 1
	366	IF ( myid == 0 ) THEN
[1327]	367	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	368	(/ time_since_reference_point /), &
	369	start = (/ do3d_time_count(av) /), &
	370	count = (/ 1 /) )
[1783]	371	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	372	ENDIF
	373	#endif
	374
	375	!
	376	!-- Loop over all variables to be written.
	377	if = 1
	378
	379	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	380
[1]	381	!
[2007]	382	!-- Temporary solution to account for data output within the new urban
	383	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	384	!-- Store the array chosen on the temporary array.
[2007]	385	trimvar = TRIM( do3d(av,if) )
[2011]	386	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	387	trimvar = 'usm_output'
	388	resorted = .TRUE.
	389	nzb_do = nzub
	390	nzt_do = nzut
	391	ELSE
	392	resorted = .FALSE.
	393	nzb_do = nzb
	394	nzt_do = nz_do3d
	395	ENDIF
[1551]	396	!
[1980]	397	!-- Set flag to steer output of radiation, land-surface, or user-defined
	398	!-- quantities
	399	found = .FALSE.
	400	!
[1551]	401	!-- Allocate a temporary array with the desired output dimensions.
[2512]	402	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	403	!
	404	!-- Before each output, set array local_pf to fill value
	405	local_pf = fill_value
	406	!
	407	!-- Set masking flag for topography for not resorted arrays
	408	flag_nr = 0
[1551]	409
[2007]	410	SELECT CASE ( trimvar )
[1]	411
	412	CASE ( 'e' )
	413	IF ( av == 0 ) THEN
	414	to_be_resorted => e
	415	ELSE
[3004]	416	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	417	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	418	e_av = REAL( fill_value, KIND = wp )
	419	ENDIF
[1]	420	to_be_resorted => e_av
	421	ENDIF
	422
[3421]	423	CASE ( 'thetal' )
[771]	424	IF ( av == 0 ) THEN
	425	to_be_resorted => pt
	426	ELSE
[3004]	427	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	428	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	429	lpt_av = REAL( fill_value, KIND = wp )
	430	ENDIF
[771]	431	to_be_resorted => lpt_av
	432	ENDIF
	433
[1]	434	CASE ( 'p' )
	435	IF ( av == 0 ) THEN
[727]	436	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	437	to_be_resorted => p
	438	ELSE
[3004]	439	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	440	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	441	p_av = REAL( fill_value, KIND = wp )
	442	ENDIF
[727]	443	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	444	to_be_resorted => p_av
	445	ENDIF
	446
	447	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	448	IF ( av == 0 ) THEN
[1359]	449	IF ( simulated_time >= particle_advection_start ) THEN
	450	tend = prt_count
	451	ELSE
	452	tend = 0.0_wp
	453	ENDIF
[2512]	454	DO i = nxl, nxr
	455	DO j = nys, nyn
[1551]	456	DO k = nzb_do, nzt_do
[1]	457	local_pf(i,j,k) = tend(k,j,i)
	458	ENDDO
	459	ENDDO
	460	ENDDO
	461	resorted = .TRUE.
	462	ELSE
[3004]	463	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	464	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	465	pc_av = REAL( fill_value, KIND = wp )
	466	ENDIF
[1]	467	to_be_resorted => pc_av
	468	ENDIF
	469
[1359]	470	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	471	IF ( av == 0 ) THEN
[1359]	472	IF ( simulated_time >= particle_advection_start ) THEN
	473	DO i = nxl, nxr
	474	DO j = nys, nyn
[1551]	475	DO k = nzb_do, nzt_do
[1359]	476	number_of_particles = prt_count(k,j,i)
	477	IF (number_of_particles <= 0) CYCLE
	478	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	479	s_r2 = 0.0_wp
	480	s_r3 = 0.0_wp
	481	DO n = 1, number_of_particles
	482	IF ( particles(n)%particle_mask ) THEN
	483	s_r2 = s_r2 + particles(n)%radius*2 &
	484	particles(n)%weight_factor
	485	s_r3 = s_r3 + particles(n)%radius*3 &
	486	particles(n)%weight_factor
	487	ENDIF
	488	ENDDO
	489	IF ( s_r2 > 0.0_wp ) THEN
	490	mean_r = s_r3 / s_r2
	491	ELSE
	492	mean_r = 0.0_wp
	493	ENDIF
	494	tend(k,j,i) = mean_r
[1]	495	ENDDO
	496	ENDDO
	497	ENDDO
[1359]	498	ELSE
	499	tend = 0.0_wp
	500	ENDIF
[2512]	501	DO i = nxl, nxr
	502	DO j = nys, nyn
[1551]	503	DO k = nzb_do, nzt_do
[1]	504	local_pf(i,j,k) = tend(k,j,i)
	505	ENDDO
	506	ENDDO
	507	ENDDO
	508	resorted = .TRUE.
	509	ELSE
[3004]	510	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	511	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	512	pr_av = REAL( fill_value, KIND = wp )
	513	ENDIF
[1]	514	to_be_resorted => pr_av
	515	ENDIF
	516
[3421]	517	CASE ( 'theta' )
[1]	518	IF ( av == 0 ) THEN
[3274]	519	IF ( .NOT. bulk_cloud_model ) THEN
[1]	520	to_be_resorted => pt
	521	ELSE
[2512]	522	DO i = nxl, nxr
	523	DO j = nys, nyn
[1551]	524	DO k = nzb_do, nzt_do
[3274]	525	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	526	d_exner(k) * &
[1]	527	ql(k,j,i)
	528	ENDDO
	529	ENDDO
	530	ENDDO
	531	resorted = .TRUE.
	532	ENDIF
	533	ELSE
[3004]	534	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	535	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	536	pt_av = REAL( fill_value, KIND = wp )
	537	ENDIF
[1]	538	to_be_resorted => pt_av
	539	ENDIF
	540
	541	CASE ( 'q' )
	542	IF ( av == 0 ) THEN
	543	to_be_resorted => q
	544	ELSE
[3004]	545	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	546	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	547	q_av = REAL( fill_value, KIND = wp )
	548	ENDIF
[1]	549	to_be_resorted => q_av
	550	ENDIF
[691]	551
[1053]	552	CASE ( 'ql' )
	553	IF ( av == 0 ) THEN
[1115]	554	to_be_resorted => ql
[1053]	555	ELSE
[3004]	556	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	557	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	558	ql_av = REAL( fill_value, KIND = wp )
	559	ENDIF
[1115]	560	to_be_resorted => ql_av
[1053]	561	ENDIF
	562
[1]	563	CASE ( 'ql_c' )
	564	IF ( av == 0 ) THEN
	565	to_be_resorted => ql_c
	566	ELSE
[3004]	567	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	568	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	569	ql_c_av = REAL( fill_value, KIND = wp )
	570	ENDIF
[1]	571	to_be_resorted => ql_c_av
	572	ENDIF
	573
	574	CASE ( 'ql_v' )
	575	IF ( av == 0 ) THEN
	576	to_be_resorted => ql_v
	577	ELSE
[3004]	578	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	579	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	580	ql_v_av = REAL( fill_value, KIND = wp )
	581	ENDIF
[1]	582	to_be_resorted => ql_v_av
	583	ENDIF
	584
	585	CASE ( 'ql_vp' )
	586	IF ( av == 0 ) THEN
[1359]	587	IF ( simulated_time >= particle_advection_start ) THEN
	588	DO i = nxl, nxr
	589	DO j = nys, nyn
[1551]	590	DO k = nzb_do, nzt_do
[1359]	591	number_of_particles = prt_count(k,j,i)
	592	IF (number_of_particles <= 0) CYCLE
	593	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	594	DO n = 1, number_of_particles
	595	IF ( particles(n)%particle_mask ) THEN
	596	tend(k,j,i) = tend(k,j,i) + &
	597	particles(n)%weight_factor / &
	598	prt_count(k,j,i)
	599	ENDIF
	600	ENDDO
[1007]	601	ENDDO
	602	ENDDO
	603	ENDDO
[1359]	604	ELSE
	605	tend = 0.0_wp
	606	ENDIF
[2512]	607	DO i = nxl, nxr
	608	DO j = nys, nyn
[1551]	609	DO k = nzb_do, nzt_do
[1007]	610	local_pf(i,j,k) = tend(k,j,i)
	611	ENDDO
	612	ENDDO
	613	ENDDO
	614	resorted = .TRUE.
[1]	615	ELSE
[3004]	616	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	617	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	618	ql_vp_av = REAL( fill_value, KIND = wp )
	619	ENDIF
[1]	620	to_be_resorted => ql_vp_av
	621	ENDIF
	622
	623	CASE ( 'qv' )
	624	IF ( av == 0 ) THEN
[2512]	625	DO i = nxl, nxr
	626	DO j = nys, nyn
[1551]	627	DO k = nzb_do, nzt_do
[1]	628	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	629	ENDDO
	630	ENDDO
	631	ENDDO
	632	resorted = .TRUE.
	633	ELSE
[3004]	634	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	635	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	636	qv_av = REAL( fill_value, KIND = wp )
	637	ENDIF
[1]	638	to_be_resorted => qv_av
	639	ENDIF
	640
	641	CASE ( 's' )
	642	IF ( av == 0 ) THEN
[1960]	643	to_be_resorted => s
[1]	644	ELSE
[3004]	645	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	646	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	647	s_av = REAL( fill_value, KIND = wp )
	648	ENDIF
[355]	649	to_be_resorted => s_av
[1]	650	ENDIF
[691]	651
[1]	652	CASE ( 'u' )
[2696]	653	flag_nr = 1
[1]	654	IF ( av == 0 ) THEN
	655	to_be_resorted => u
	656	ELSE
[3004]	657	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	658	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	659	u_av = REAL( fill_value, KIND = wp )
	660	ENDIF
[1]	661	to_be_resorted => u_av
	662	ENDIF
	663
	664	CASE ( 'v' )
[2696]	665	flag_nr = 2
[1]	666	IF ( av == 0 ) THEN
	667	to_be_resorted => v
	668	ELSE
[3004]	669	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	670	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	671	v_av = REAL( fill_value, KIND = wp )
	672	ENDIF
[1]	673	to_be_resorted => v_av
	674	ENDIF
	675
[3421]	676	CASE ( 'thetav' )
[1]	677	IF ( av == 0 ) THEN
	678	to_be_resorted => vpt
	679	ELSE
[3004]	680	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	681	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	682	vpt_av = REAL( fill_value, KIND = wp )
	683	ENDIF
[1]	684	to_be_resorted => vpt_av
	685	ENDIF
	686
	687	CASE ( 'w' )
[2696]	688	flag_nr = 3
[1]	689	IF ( av == 0 ) THEN
	690	to_be_resorted => w
	691	ELSE
[3004]	692	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	693	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	694	w_av = REAL( fill_value, KIND = wp )
	695	ENDIF
[1]	696	to_be_resorted => w_av
	697	ENDIF
[2007]	698	!
	699	!-- Block of urban surface model outputs
	700	CASE ( 'usm_output' )
[3274]	701	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
[2007]	702	nzb_do, nzt_do )
[1]	703
	704	CASE DEFAULT
[1972]	705
[1]	706	!
[3294]	707	!-- Quantities of other modules
[3274]	708	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
	709	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	710	nzb_do, nzt_do )
	711	resorted = .TRUE.
	712	ENDIF
	713
[3294]	714	IF ( .NOT. found .AND. air_chemistry ) THEN
	715	CALL chem_data_output_3d( av, do3d(av,if), found, &
	716	local_pf, fill_value, nzb_do, nzt_do )
	717	resorted = .TRUE.
	718	ENDIF
	719
	720	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	721	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	722	nzb_do, nzt_do )
	723	resorted = .TRUE.
	724	ENDIF
	725
[3274]	726	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	727	!
	728	!-- For soil model quantities, it is required to re-allocate local_pf
	729	nzb_do = nzb_soil
	730	nzt_do = nzt_soil
	731
	732	DEALLOCATE ( local_pf )
[2512]	733	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	734	local_pf = fill_value
[1972]	735
	736	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	737	resorted = .TRUE.
[1976]	738
	739	!
	740	!-- If no soil model variable was found, re-allocate local_pf
	741	IF ( .NOT. found ) THEN
	742	nzb_do = nzb
	743	nzt_do = nz_do3d
	744
	745	DEALLOCATE ( local_pf )
[2512]	746	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	747	ENDIF
	748
[1972]	749	ENDIF
	750
[3294]	751	IF ( .NOT. found .AND. ocean_mode ) THEN
	752	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
	753	nzb_do, nzt_do )
[1976]	754	resorted = .TRUE.
	755	ENDIF
	756
[3294]	757	IF ( .NOT. found .AND. plant_canopy ) THEN
	758	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	759	fill_value, nzb_do, nzt_do )
[2817]	760	resorted = .TRUE.
	761	ENDIF
	762
[3294]	763	IF ( .NOT. found .AND. radiation ) THEN
	764	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	765	local_pf, nzb_do, nzt_do )
[2696]	766	resorted = .TRUE.
	767	ENDIF
	768
[3337]	769	!
	770	!-- Biometeorology quantity
	771	IF ( .NOT. found .AND. radiation ) THEN
	772	CALL biometeorology_data_output_3d( av, do3d(av,if), found, &
	773	local_pf, nzb_do, nzt_do )
	774	resorted = .TRUE.
	775	ENDIF
	776
[3294]	777	IF ( .NOT. found ) THEN
	778	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	779	nzb_do, nzt_do )
[2209]	780	resorted = .TRUE.
	781	ENDIF
	782
	783	!
[3294]	784	!-- User defined quantities
[1972]	785	IF ( .NOT. found ) THEN
	786	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	787	nzb_do, nzt_do )
	788	resorted = .TRUE.
	789	ENDIF
[1]	790
[254]	791	IF ( .NOT. found ) THEN
[1320]	792	message_string = 'no output available for: ' // &
[274]	793	TRIM( do3d(av,if) )
[254]	794	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	795	ENDIF
	796
	797	END SELECT
	798
	799	!
	800	!-- Resort the array to be output, if not done above
	801	IF ( .NOT. resorted ) THEN
[2512]	802	DO i = nxl, nxr
	803	DO j = nys, nyn
[1551]	804	DO k = nzb_do, nzt_do
[2696]	805	local_pf(i,j,k) = MERGE( &
	806	to_be_resorted(k,j,i), &
	807	REAL( fill_value, KIND = wp ), &
	808	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	809	ENDDO
	810	ENDDO
	811	ENDDO
	812	ENDIF
	813
	814	!
[1327]	815	!-- Output of the 3D-array
	816	#if defined( __parallel )
	817	IF ( netcdf_data_format < 5 ) THEN
[1]	818	!
[1327]	819	!-- Non-parallel netCDF output. Data is output in parallel in
	820	!-- FORTRAN binary format here, and later collected into one file by
	821	!-- combine_plot_fields
	822	IF ( myid == 0 ) THEN
	823	WRITE ( 30 ) time_since_reference_point, &
	824	do3d_time_count(av), av
[1]	825	ENDIF
[1327]	826	DO i = 0, io_blocks-1
	827	IF ( i == io_group ) THEN
[2512]	828	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	829	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	830	ENDIF
[1972]	831
[1327]	832	CALL MPI_BARRIER( comm2d, ierr )
[1972]	833
[1327]	834	ENDDO
[559]	835
[1327]	836	ELSE
[646]	837	#if defined( __netcdf )
[493]	838	!
[1327]	839	!-- Parallel output in netCDF4/HDF5 format.
[2512]	840	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	841	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	842	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	843	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	844	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	845	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	846	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	847	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	848	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	849	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	850	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	851	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	852	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	853	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	854	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	855	! ELSE
[1327]	856	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	857	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	858	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	859	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	860	! ENDIF
[1783]	861	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	862	#endif
[1327]	863	ENDIF
[1]	864	#else
	865	#if defined( __netcdf )
[1327]	866	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	867	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	868	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	869	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	870	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	871	#endif
	872	#endif
	873
	874	if = if + 1
	875
	876	!
[1551]	877	!-- Deallocate temporary array
	878	DEALLOCATE ( local_pf )
[1]	879
[1551]	880	ENDDO
[1]	881
[1318]	882	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	883
	884	END SUBROUTINE data_output_3d

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