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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3414

Last change on this file since 3414 was 3405, checked in by raasch, 6 years ago
bugfix: BIND attribute added to derived type particle_type, bugfix: nx, ny are required in non-parallel case
Property svn:keywords set to `Id`
File size: 31.5 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3405 2018-10-23 15:34:41Z raasch $
[3405]	27	! bugfix: nx, ny are required in non-parallel case
	28	!
	29	! 3337 2018-10-12 15:17:09Z kanani
[3337]	30	! (from branch resler)
	31	! Add Biometeorology
	32	!
	33	! 3294 2018-10-01 02:37:10Z raasch
[3294]	34	! changes concerning modularization of ocean option
	35	!
	36	! 3274 2018-09-24 15:42:55Z knoop
[3274]	37	! Modularization of all bulk cloud physics code components
	38	!
	39	! 3241 2018-09-12 15:02:00Z raasch
[3241]	40	! unused variables and format statements removed
	41	!
	42	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	43	! Error messages revised
	44	!
	45	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	46	! Error message revised
	47	!
	48	! 3014 2018-05-09 08:42:38Z maronga
[3014]	49	! Added nzb_do and nzt_do for some modules for 3d output
	50	!
	51	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	52	! Allocation checks implemented (averaged data will be assigned to fill values
	53	! if no allocation happened so far)
	54	!
	55	! 2967 2018-04-13 11:22:08Z raasch
[2967]	56	! bugfix: missing parallel cpp-directives added
	57	!
	58	! 2817 2018-02-19 16:32:21Z knoop
[2817]	59	! Preliminary gust module interface implemented
	60	!
	61	! 2766 2018-01-22 17:17:47Z kanani
[2766]	62	! Removed preprocessor directive __chem
	63	!
	64	! 2756 2018-01-16 18:11:14Z suehring
[2756]	65	! Fill values for 3D output of chemical species introduced.
	66	!
	67	! 2746 2018-01-15 12:06:04Z suehring
[2746]	68	! Move flag plant canopy to modules
	69	!
	70	! 2718 2018-01-02 08:49:38Z maronga
[2716]	71	! Corrected "Former revisions" section
	72	!
	73	! 2696 2017-12-14 17:12:51Z kanani
	74	! Change in file header (GPL part)
[2696]	75	! Implementation of turbulence_closure_mod (TG)
	76	! Implementation of chemistry module (FK)
	77	! Set fill values at topography grid points or e.g. non-natural-type surface
	78	! in case of LSM output (MS)
	79	!
	80	! 2512 2017-10-04 08:26:59Z raasch
[2512]	81	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	82	! no output of ghost layer data
	83	!
	84	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	85	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	86	! includes two more prognostic equations for cloud drop concentration (nc)
	87	! and cloud water content (qc).
	88	!
	89	! 2233 2017-05-30 18:08:54Z suehring
[1552]	90	!
[2233]	91	! 2232 2017-05-30 17:47:52Z suehring
	92	! Adjustments to new topography concept
	93	!
[2210]	94	! 2209 2017-04-19 09:34:46Z kanani
	95	! Added plant canopy model output
	96	!
[2032]	97	! 2031 2016-10-21 15:11:58Z knoop
	98	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	99	!
[2012]	100	! 2011 2016-09-19 17:29:57Z kanani
	101	! Flag urban_surface is now defined in module control_parameters,
	102	! changed prefix for urban surface model output to "usm_",
	103	! introduced control parameter varnamelength for LEN of trimvar.
	104	!
[2008]	105	! 2007 2016-08-24 15:47:17Z kanani
	106	! Added support for new urban surface model (temporary modifications of
	107	! SELECT CASE ( ) necessary, see variable trimvar)
	108	!
[2001]	109	! 2000 2016-08-20 18:09:15Z knoop
	110	! Forced header and separation lines into 80 columns
	111	!
[1981]	112	! 1980 2016-07-29 15:51:57Z suehring
	113	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	114	! to .F.
	115	!
[1977]	116	! 1976 2016-07-27 13:28:04Z maronga
	117	! Output of radiation quantities is now done directly in the respective module
	118	!
[1973]	119	! 1972 2016-07-26 07:52:02Z maronga
	120	! Output of land surface quantities is now done directly in the respective module.
	121	! Unnecessary directive __parallel removed.
	122	!
[1961]	123	! 1960 2016-07-12 16:34:24Z suehring
	124	! Scalar surface flux added
	125	!
[1851]	126	! 1849 2016-04-08 11:33:18Z hoffmann
	127	! prr moved to arrays_3d
	128	!
[1823]	129	! 1822 2016-04-07 07:49:42Z hoffmann
	130	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	131	!
[1809]	132	! 1808 2016-04-05 19:44:00Z raasch
	133	! test output removed
	134	!
[1784]	135	! 1783 2016-03-06 18:36:17Z raasch
	136	! name change of netcdf routines and module + related changes
	137	!
[1746]	138	! 1745 2016-02-05 13:06:51Z gronemeier
	139	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	140	!
[1692]	141	! 1691 2015-10-26 16:17:44Z maronga
	142	! Added output of radiative heating rates for RRTMG
	143	!
[1683]	144	! 1682 2015-10-07 23:56:08Z knoop
	145	! Code annotations made doxygen readable
	146	!
[1586]	147	! 1585 2015-04-30 07:05:52Z maronga
	148	! Added support for RRTMG
	149	!
[1552]	150	! 1551 2015-03-03 14:18:16Z maronga
[1551]	151	! Added suppport for land surface model and radiation model output. In the course
	152	! of this action, the limits for vertical loops have been changed (from nzb and
	153	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	154	! Moreover, a new vertical grid zs was introduced.
[1329]	155	!
[1360]	156	! 1359 2014-04-11 17:15:14Z hoffmann
	157	! New particle structure integrated.
	158	!
[1354]	159	! 1353 2014-04-08 15:21:23Z heinze
	160	! REAL constants provided with KIND-attribute
	161	!
[1329]	162	! 1327 2014-03-21 11:00:16Z raasch
	163	! parts concerning avs output removed,
	164	! -netcdf output queries
	165	!
[1321]	166	! 1320 2014-03-20 08:40:49Z raasch
[1320]	167	! ONLY-attribute added to USE-statements,
	168	! kind-parameters added to all INTEGER and REAL declaration statements,
	169	! kinds are defined in new module kinds,
	170	! old module precision_kind is removed,
	171	! revision history before 2012 removed,
	172	! comment fields (!:) to be used for variable explanations added to
	173	! all variable declaration statements
[674]	174	!
[1319]	175	! 1318 2014-03-17 13:35:16Z raasch
	176	! barrier argument removed from cpu_log,
	177	! module interfaces removed
	178	!
[1309]	179	! 1308 2014-03-13 14:58:42Z fricke
	180	! Check, if the limit of the time dimension is exceeded for parallel output
	181	! To increase the performance for parallel output, the following is done:
	182	! - Update of time axis is only done by PE0
	183	!
[1245]	184	! 1244 2013-10-31 08:16:56Z raasch
	185	! Bugfix for index bounds in case of 3d-parallel output
	186	!
[1116]	187	! 1115 2013-03-26 18:16:16Z hoffmann
	188	! ql is calculated by calc_liquid_water_content
	189	!
[1107]	190	! 1106 2013-03-04 05:31:38Z raasch
	191	! array_kind renamed precision_kind
	192	!
[1077]	193	! 1076 2012-12-05 08:30:18Z hoffmann
	194	! Bugfix in output of ql
	195	!
[1054]	196	! 1053 2012-11-13 17:11:03Z hoffmann
	197	! +nr, qr, prr, qc and averaged quantities
	198	!
[1037]	199	! 1036 2012-10-22 13:43:42Z raasch
	200	! code put under GPL (PALM 3.9)
	201	!
[1035]	202	! 1031 2012-10-19 14:35:30Z raasch
	203	! netCDF4 without parallel file support implemented
	204	!
[1008]	205	! 1007 2012-09-19 14:30:36Z franke
	206	! Bugfix: missing calculation of ql_vp added
	207	!
[1]	208	! Revision 1.1 1997/09/03 06:29:36 raasch
	209	! Initial revision
	210	!
	211	!
	212	! Description:
	213	! ------------
[1682]	214	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	215	!------------------------------------------------------------------------------!
[1682]	216	SUBROUTINE data_output_3d( av )
	217
[1]	218
[1320]	219	USE arrays_3d, &
[3294]	220	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	221	tend, u, v, vpt, w
[3274]	222
[1]	223	USE averaging
[3274]	224
	225	USE basic_constants_and_equations_mod, &
	226	ONLY: lv_d_cp
	227
	228	USE bulk_cloud_model_mod, &
	229	ONLY: bulk_cloud_model, bcm_data_output_3d
	230
[2696]	231	USE chemistry_model_mod, &
	232	ONLY: chem_data_output_3d
	233
[1320]	234	USE control_parameters, &
[3274]	235	ONLY: air_chemistry, do3d, do3d_no, do3d_time_count, &
[2696]	236	io_blocks, io_group, land_surface, message_string, &
[3294]	237	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[2232]	238	psolver, simulated_time, time_since_reference_point, &
	239	urban_surface, varnamelength
[3274]	240
[1320]	241	USE cpulog, &
	242	ONLY: log_point, cpu_log
[2817]	243
	244	USE gust_mod, &
	245	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	246
[3405]	247	#if defined( __parallel )
[1320]	248	USE indices, &
[3241]	249	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	250	wall_flags_0
[3405]	251	#else
	252	USE indices, &
	253	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	254	nzt, wall_flags_0
	255	#endif
[3274]	256
[1320]	257	USE kinds
[3274]	258
[1551]	259	USE land_surface_model_mod, &
[2232]	260	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	261
[1783]	262	#if defined( __netcdf )
	263	USE NETCDF
	264	#endif
	265
	266	USE netcdf_interface, &
[2696]	267	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	268	netcdf_data_format, netcdf_handle_error
[1320]	269
[3294]	270	USE ocean_mod, &
	271	ONLY: ocean_data_output_3d
	272
[1320]	273	USE particle_attributes, &
[1359]	274	ONLY: grid_particles, number_of_particles, particles, &
	275	particle_advection_start, prt_count
[1320]	276
[1]	277	USE pegrid
	278
[2209]	279	USE plant_canopy_model_mod, &
[2746]	280	ONLY: pcm_data_output_3d
[2209]	281
[1585]	282	USE radiation_model_mod, &
[2696]	283	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	284
[3337]	285	USE biometeorology_mod, &
	286	ONLY: biometeorology_data_output_3d
	287
[2696]	288	USE turbulence_closure_mod, &
	289	ONLY: tcm_data_output_3d
	290
[2007]	291	USE urban_surface_mod, &
[2696]	292	ONLY: usm_data_output_3d
[1585]	293
[2007]	294
[1]	295	IMPLICIT NONE
	296
[1682]	297	INTEGER(iwp) :: av !<
[2696]	298	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	299	INTEGER(iwp) :: i !<
	300	INTEGER(iwp) :: if !<
	301	INTEGER(iwp) :: j !<
	302	INTEGER(iwp) :: k !<
	303	INTEGER(iwp) :: n !<
	304	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	305	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	306
[1682]	307	LOGICAL :: found !<
	308	LOGICAL :: resorted !<
[1]	309
[1682]	310	REAL(wp) :: mean_r !<
	311	REAL(wp) :: s_r2 !<
	312	REAL(wp) :: s_r3 !<
[1]	313
[1682]	314	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	315
[1682]	316	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	317
[2011]	318	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	319
[1]	320	!
	321	!-- Return, if nothing to output
	322	IF ( do3d_no(av) == 0 ) RETURN
	323
	324	CALL cpu_log (log_point(14),'data_output_3d','start')
	325
	326	!
	327	!-- Open output file.
[2512]	328	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	329	!-- own file and writes the data of its subdomain in binary format. After the
	330	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	331	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	332	IF ( netcdf_data_format < 5 ) THEN
[2967]	333	#if defined( __parallel )
[1327]	334	CALL check_open( 30 )
[2967]	335	#endif
[1327]	336	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	337	ELSE
[1327]	338	CALL check_open( 106+av*10 )
[493]	339	ENDIF
[1]	340
	341	!
[1745]	342	!-- For parallel netcdf output the time axis must be limited. Return, if this
	343	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	344	!-- the given end time by the length of the given output interval.
	345	IF ( netcdf_data_format > 4 ) THEN
	346	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	347	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	348	simulated_time, '&because the maximum ', &
[1745]	349	'number of output time levels is ', &
	350	'exceeded.'
	351	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	352	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	353	RETURN
	354	ENDIF
	355	ENDIF
	356
	357	!
[1031]	358	!-- Update the netCDF time axis
[1308]	359	!-- In case of parallel output, this is only done by PE0 to increase the
	360	!-- performance.
[1]	361	#if defined( __netcdf )
[1308]	362	do3d_time_count(av) = do3d_time_count(av) + 1
	363	IF ( myid == 0 ) THEN
[1327]	364	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	365	(/ time_since_reference_point /), &
	366	start = (/ do3d_time_count(av) /), &
	367	count = (/ 1 /) )
[1783]	368	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	369	ENDIF
	370	#endif
	371
	372	!
	373	!-- Loop over all variables to be written.
	374	if = 1
	375
	376	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	377
[1]	378	!
[2007]	379	!-- Temporary solution to account for data output within the new urban
	380	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	381	!-- Store the array chosen on the temporary array.
[2007]	382	trimvar = TRIM( do3d(av,if) )
[2011]	383	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	384	trimvar = 'usm_output'
	385	resorted = .TRUE.
	386	nzb_do = nzub
	387	nzt_do = nzut
	388	ELSE
	389	resorted = .FALSE.
	390	nzb_do = nzb
	391	nzt_do = nz_do3d
	392	ENDIF
[1551]	393	!
[1980]	394	!-- Set flag to steer output of radiation, land-surface, or user-defined
	395	!-- quantities
	396	found = .FALSE.
	397	!
[1551]	398	!-- Allocate a temporary array with the desired output dimensions.
[2512]	399	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	400	!
	401	!-- Before each output, set array local_pf to fill value
	402	local_pf = fill_value
	403	!
	404	!-- Set masking flag for topography for not resorted arrays
	405	flag_nr = 0
[1551]	406
[2007]	407	SELECT CASE ( trimvar )
[1]	408
	409	CASE ( 'e' )
	410	IF ( av == 0 ) THEN
	411	to_be_resorted => e
	412	ELSE
[3004]	413	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	414	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	415	e_av = REAL( fill_value, KIND = wp )
	416	ENDIF
[1]	417	to_be_resorted => e_av
	418	ENDIF
	419
[771]	420	CASE ( 'lpt' )
	421	IF ( av == 0 ) THEN
	422	to_be_resorted => pt
	423	ELSE
[3004]	424	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	425	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	426	lpt_av = REAL( fill_value, KIND = wp )
	427	ENDIF
[771]	428	to_be_resorted => lpt_av
	429	ENDIF
	430
[1]	431	CASE ( 'p' )
	432	IF ( av == 0 ) THEN
[727]	433	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	434	to_be_resorted => p
	435	ELSE
[3004]	436	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	437	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	438	p_av = REAL( fill_value, KIND = wp )
	439	ENDIF
[727]	440	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	441	to_be_resorted => p_av
	442	ENDIF
	443
	444	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	445	IF ( av == 0 ) THEN
[1359]	446	IF ( simulated_time >= particle_advection_start ) THEN
	447	tend = prt_count
	448	ELSE
	449	tend = 0.0_wp
	450	ENDIF
[2512]	451	DO i = nxl, nxr
	452	DO j = nys, nyn
[1551]	453	DO k = nzb_do, nzt_do
[1]	454	local_pf(i,j,k) = tend(k,j,i)
	455	ENDDO
	456	ENDDO
	457	ENDDO
	458	resorted = .TRUE.
	459	ELSE
[3004]	460	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	461	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	462	pc_av = REAL( fill_value, KIND = wp )
	463	ENDIF
[1]	464	to_be_resorted => pc_av
	465	ENDIF
	466
[1359]	467	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	468	IF ( av == 0 ) THEN
[1359]	469	IF ( simulated_time >= particle_advection_start ) THEN
	470	DO i = nxl, nxr
	471	DO j = nys, nyn
[1551]	472	DO k = nzb_do, nzt_do
[1359]	473	number_of_particles = prt_count(k,j,i)
	474	IF (number_of_particles <= 0) CYCLE
	475	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	476	s_r2 = 0.0_wp
	477	s_r3 = 0.0_wp
	478	DO n = 1, number_of_particles
	479	IF ( particles(n)%particle_mask ) THEN
	480	s_r2 = s_r2 + particles(n)%radius*2 &
	481	particles(n)%weight_factor
	482	s_r3 = s_r3 + particles(n)%radius*3 &
	483	particles(n)%weight_factor
	484	ENDIF
	485	ENDDO
	486	IF ( s_r2 > 0.0_wp ) THEN
	487	mean_r = s_r3 / s_r2
	488	ELSE
	489	mean_r = 0.0_wp
	490	ENDIF
	491	tend(k,j,i) = mean_r
[1]	492	ENDDO
	493	ENDDO
	494	ENDDO
[1359]	495	ELSE
	496	tend = 0.0_wp
	497	ENDIF
[2512]	498	DO i = nxl, nxr
	499	DO j = nys, nyn
[1551]	500	DO k = nzb_do, nzt_do
[1]	501	local_pf(i,j,k) = tend(k,j,i)
	502	ENDDO
	503	ENDDO
	504	ENDDO
	505	resorted = .TRUE.
	506	ELSE
[3004]	507	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	508	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	509	pr_av = REAL( fill_value, KIND = wp )
	510	ENDIF
[1]	511	to_be_resorted => pr_av
	512	ENDIF
	513
	514	CASE ( 'pt' )
	515	IF ( av == 0 ) THEN
[3274]	516	IF ( .NOT. bulk_cloud_model ) THEN
[1]	517	to_be_resorted => pt
	518	ELSE
[2512]	519	DO i = nxl, nxr
	520	DO j = nys, nyn
[1551]	521	DO k = nzb_do, nzt_do
[3274]	522	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	523	d_exner(k) * &
[1]	524	ql(k,j,i)
	525	ENDDO
	526	ENDDO
	527	ENDDO
	528	resorted = .TRUE.
	529	ENDIF
	530	ELSE
[3004]	531	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	532	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	533	pt_av = REAL( fill_value, KIND = wp )
	534	ENDIF
[1]	535	to_be_resorted => pt_av
	536	ENDIF
	537
	538	CASE ( 'q' )
	539	IF ( av == 0 ) THEN
	540	to_be_resorted => q
	541	ELSE
[3004]	542	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	543	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	544	q_av = REAL( fill_value, KIND = wp )
	545	ENDIF
[1]	546	to_be_resorted => q_av
	547	ENDIF
[691]	548
[1053]	549	CASE ( 'ql' )
	550	IF ( av == 0 ) THEN
[1115]	551	to_be_resorted => ql
[1053]	552	ELSE
[3004]	553	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	554	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	555	ql_av = REAL( fill_value, KIND = wp )
	556	ENDIF
[1115]	557	to_be_resorted => ql_av
[1053]	558	ENDIF
	559
[1]	560	CASE ( 'ql_c' )
	561	IF ( av == 0 ) THEN
	562	to_be_resorted => ql_c
	563	ELSE
[3004]	564	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	565	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	566	ql_c_av = REAL( fill_value, KIND = wp )
	567	ENDIF
[1]	568	to_be_resorted => ql_c_av
	569	ENDIF
	570
	571	CASE ( 'ql_v' )
	572	IF ( av == 0 ) THEN
	573	to_be_resorted => ql_v
	574	ELSE
[3004]	575	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	576	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	577	ql_v_av = REAL( fill_value, KIND = wp )
	578	ENDIF
[1]	579	to_be_resorted => ql_v_av
	580	ENDIF
	581
	582	CASE ( 'ql_vp' )
	583	IF ( av == 0 ) THEN
[1359]	584	IF ( simulated_time >= particle_advection_start ) THEN
	585	DO i = nxl, nxr
	586	DO j = nys, nyn
[1551]	587	DO k = nzb_do, nzt_do
[1359]	588	number_of_particles = prt_count(k,j,i)
	589	IF (number_of_particles <= 0) CYCLE
	590	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	591	DO n = 1, number_of_particles
	592	IF ( particles(n)%particle_mask ) THEN
	593	tend(k,j,i) = tend(k,j,i) + &
	594	particles(n)%weight_factor / &
	595	prt_count(k,j,i)
	596	ENDIF
	597	ENDDO
[1007]	598	ENDDO
	599	ENDDO
	600	ENDDO
[1359]	601	ELSE
	602	tend = 0.0_wp
	603	ENDIF
[2512]	604	DO i = nxl, nxr
	605	DO j = nys, nyn
[1551]	606	DO k = nzb_do, nzt_do
[1007]	607	local_pf(i,j,k) = tend(k,j,i)
	608	ENDDO
	609	ENDDO
	610	ENDDO
	611	resorted = .TRUE.
[1]	612	ELSE
[3004]	613	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	614	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	615	ql_vp_av = REAL( fill_value, KIND = wp )
	616	ENDIF
[1]	617	to_be_resorted => ql_vp_av
	618	ENDIF
	619
	620	CASE ( 'qv' )
	621	IF ( av == 0 ) THEN
[2512]	622	DO i = nxl, nxr
	623	DO j = nys, nyn
[1551]	624	DO k = nzb_do, nzt_do
[1]	625	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	626	ENDDO
	627	ENDDO
	628	ENDDO
	629	resorted = .TRUE.
	630	ELSE
[3004]	631	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	632	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	633	qv_av = REAL( fill_value, KIND = wp )
	634	ENDIF
[1]	635	to_be_resorted => qv_av
	636	ENDIF
	637
	638	CASE ( 's' )
	639	IF ( av == 0 ) THEN
[1960]	640	to_be_resorted => s
[1]	641	ELSE
[3004]	642	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	643	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	644	s_av = REAL( fill_value, KIND = wp )
	645	ENDIF
[355]	646	to_be_resorted => s_av
[1]	647	ENDIF
[691]	648
[1]	649	CASE ( 'u' )
[2696]	650	flag_nr = 1
[1]	651	IF ( av == 0 ) THEN
	652	to_be_resorted => u
	653	ELSE
[3004]	654	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	655	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	656	u_av = REAL( fill_value, KIND = wp )
	657	ENDIF
[1]	658	to_be_resorted => u_av
	659	ENDIF
	660
	661	CASE ( 'v' )
[2696]	662	flag_nr = 2
[1]	663	IF ( av == 0 ) THEN
	664	to_be_resorted => v
	665	ELSE
[3004]	666	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	667	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	668	v_av = REAL( fill_value, KIND = wp )
	669	ENDIF
[1]	670	to_be_resorted => v_av
	671	ENDIF
	672
	673	CASE ( 'vpt' )
	674	IF ( av == 0 ) THEN
	675	to_be_resorted => vpt
	676	ELSE
[3004]	677	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	678	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	679	vpt_av = REAL( fill_value, KIND = wp )
	680	ENDIF
[1]	681	to_be_resorted => vpt_av
	682	ENDIF
	683
	684	CASE ( 'w' )
[2696]	685	flag_nr = 3
[1]	686	IF ( av == 0 ) THEN
	687	to_be_resorted => w
	688	ELSE
[3004]	689	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	690	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	691	w_av = REAL( fill_value, KIND = wp )
	692	ENDIF
[1]	693	to_be_resorted => w_av
	694	ENDIF
[2007]	695	!
	696	!-- Block of urban surface model outputs
	697	CASE ( 'usm_output' )
[3274]	698	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
[2007]	699	nzb_do, nzt_do )
[1]	700
	701	CASE DEFAULT
[1972]	702
[1]	703	!
[3294]	704	!-- Quantities of other modules
[3274]	705	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
	706	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	707	nzb_do, nzt_do )
	708	resorted = .TRUE.
	709	ENDIF
	710
[3294]	711	IF ( .NOT. found .AND. air_chemistry ) THEN
	712	CALL chem_data_output_3d( av, do3d(av,if), found, &
	713	local_pf, fill_value, nzb_do, nzt_do )
	714	resorted = .TRUE.
	715	ENDIF
	716
	717	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	718	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	719	nzb_do, nzt_do )
	720	resorted = .TRUE.
	721	ENDIF
	722
[3274]	723	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	724	!
	725	!-- For soil model quantities, it is required to re-allocate local_pf
	726	nzb_do = nzb_soil
	727	nzt_do = nzt_soil
	728
	729	DEALLOCATE ( local_pf )
[2512]	730	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	731	local_pf = fill_value
[1972]	732
	733	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	734	resorted = .TRUE.
[1976]	735
	736	!
	737	!-- If no soil model variable was found, re-allocate local_pf
	738	IF ( .NOT. found ) THEN
	739	nzb_do = nzb
	740	nzt_do = nz_do3d
	741
	742	DEALLOCATE ( local_pf )
[2512]	743	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	744	ENDIF
	745
[1972]	746	ENDIF
	747
[3294]	748	IF ( .NOT. found .AND. ocean_mode ) THEN
	749	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
	750	nzb_do, nzt_do )
[1976]	751	resorted = .TRUE.
	752	ENDIF
	753
[3294]	754	IF ( .NOT. found .AND. plant_canopy ) THEN
	755	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	756	fill_value, nzb_do, nzt_do )
[2817]	757	resorted = .TRUE.
	758	ENDIF
	759
[3294]	760	IF ( .NOT. found .AND. radiation ) THEN
	761	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	762	local_pf, nzb_do, nzt_do )
[2696]	763	resorted = .TRUE.
	764	ENDIF
	765
[3337]	766	!
	767	!-- Biometeorology quantity
	768	IF ( .NOT. found .AND. radiation ) THEN
	769	CALL biometeorology_data_output_3d( av, do3d(av,if), found, &
	770	local_pf, nzb_do, nzt_do )
	771	resorted = .TRUE.
	772	ENDIF
	773
[3294]	774	IF ( .NOT. found ) THEN
	775	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	776	nzb_do, nzt_do )
[2209]	777	resorted = .TRUE.
	778	ENDIF
	779
	780	!
[3294]	781	!-- User defined quantities
[1972]	782	IF ( .NOT. found ) THEN
	783	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	784	nzb_do, nzt_do )
	785	resorted = .TRUE.
	786	ENDIF
[1]	787
[254]	788	IF ( .NOT. found ) THEN
[1320]	789	message_string = 'no output available for: ' // &
[274]	790	TRIM( do3d(av,if) )
[254]	791	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	792	ENDIF
	793
	794	END SELECT
	795
	796	!
	797	!-- Resort the array to be output, if not done above
	798	IF ( .NOT. resorted ) THEN
[2512]	799	DO i = nxl, nxr
	800	DO j = nys, nyn
[1551]	801	DO k = nzb_do, nzt_do
[2696]	802	local_pf(i,j,k) = MERGE( &
	803	to_be_resorted(k,j,i), &
	804	REAL( fill_value, KIND = wp ), &
	805	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	806	ENDDO
	807	ENDDO
	808	ENDDO
	809	ENDIF
	810
	811	!
[1327]	812	!-- Output of the 3D-array
	813	#if defined( __parallel )
	814	IF ( netcdf_data_format < 5 ) THEN
[1]	815	!
[1327]	816	!-- Non-parallel netCDF output. Data is output in parallel in
	817	!-- FORTRAN binary format here, and later collected into one file by
	818	!-- combine_plot_fields
	819	IF ( myid == 0 ) THEN
	820	WRITE ( 30 ) time_since_reference_point, &
	821	do3d_time_count(av), av
[1]	822	ENDIF
[1327]	823	DO i = 0, io_blocks-1
	824	IF ( i == io_group ) THEN
[2512]	825	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	826	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	827	ENDIF
[1972]	828
[1327]	829	CALL MPI_BARRIER( comm2d, ierr )
[1972]	830
[1327]	831	ENDDO
[559]	832
[1327]	833	ELSE
[646]	834	#if defined( __netcdf )
[493]	835	!
[1327]	836	!-- Parallel output in netCDF4/HDF5 format.
[2512]	837	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	838	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	839	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	840	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	841	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	842	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	843	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	844	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	845	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	846	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	847	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	848	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	849	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	850	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	851	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	852	! ELSE
[1327]	853	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	854	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	855	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	856	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	857	! ENDIF
[1783]	858	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	859	#endif
[1327]	860	ENDIF
[1]	861	#else
	862	#if defined( __netcdf )
[1327]	863	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	864	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	865	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	866	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	867	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	868	#endif
	869	#endif
	870
	871	if = if + 1
	872
	873	!
[1551]	874	!-- Deallocate temporary array
	875	DEALLOCATE ( local_pf )
[1]	876
[1551]	877	ENDDO
[1]	878
[1318]	879	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	880
	881	END SUBROUTINE data_output_3d

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