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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3346

Last change on this file since 3346 was 3337, checked in by kanani, 6 years ago
reintegrate branch resler to trunk
Property svn:keywords set to `Id`
File size: 31.2 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3337 2018-10-12 15:17:09Z raasch $
[3337]	27	! (from branch resler)
	28	! Add Biometeorology
	29	!
	30	! 3294 2018-10-01 02:37:10Z raasch
[3294]	31	! changes concerning modularization of ocean option
	32	!
	33	! 3274 2018-09-24 15:42:55Z knoop
[3274]	34	! Modularization of all bulk cloud physics code components
	35	!
	36	! 3241 2018-09-12 15:02:00Z raasch
[3241]	37	! unused variables and format statements removed
	38	!
	39	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	40	! Error messages revised
	41	!
	42	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	43	! Error message revised
	44	!
	45	! 3014 2018-05-09 08:42:38Z maronga
[3014]	46	! Added nzb_do and nzt_do for some modules for 3d output
	47	!
	48	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	49	! Allocation checks implemented (averaged data will be assigned to fill values
	50	! if no allocation happened so far)
	51	!
	52	! 2967 2018-04-13 11:22:08Z raasch
[2967]	53	! bugfix: missing parallel cpp-directives added
	54	!
	55	! 2817 2018-02-19 16:32:21Z knoop
[2817]	56	! Preliminary gust module interface implemented
	57	!
	58	! 2766 2018-01-22 17:17:47Z kanani
[2766]	59	! Removed preprocessor directive __chem
	60	!
	61	! 2756 2018-01-16 18:11:14Z suehring
[2756]	62	! Fill values for 3D output of chemical species introduced.
	63	!
	64	! 2746 2018-01-15 12:06:04Z suehring
[2746]	65	! Move flag plant canopy to modules
	66	!
	67	! 2718 2018-01-02 08:49:38Z maronga
[2716]	68	! Corrected "Former revisions" section
	69	!
	70	! 2696 2017-12-14 17:12:51Z kanani
	71	! Change in file header (GPL part)
[2696]	72	! Implementation of turbulence_closure_mod (TG)
	73	! Implementation of chemistry module (FK)
	74	! Set fill values at topography grid points or e.g. non-natural-type surface
	75	! in case of LSM output (MS)
	76	!
	77	! 2512 2017-10-04 08:26:59Z raasch
[2512]	78	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	79	! no output of ghost layer data
	80	!
	81	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	82	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	83	! includes two more prognostic equations for cloud drop concentration (nc)
	84	! and cloud water content (qc).
	85	!
	86	! 2233 2017-05-30 18:08:54Z suehring
[1552]	87	!
[2233]	88	! 2232 2017-05-30 17:47:52Z suehring
	89	! Adjustments to new topography concept
	90	!
[2210]	91	! 2209 2017-04-19 09:34:46Z kanani
	92	! Added plant canopy model output
	93	!
[2032]	94	! 2031 2016-10-21 15:11:58Z knoop
	95	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	96	!
[2012]	97	! 2011 2016-09-19 17:29:57Z kanani
	98	! Flag urban_surface is now defined in module control_parameters,
	99	! changed prefix for urban surface model output to "usm_",
	100	! introduced control parameter varnamelength for LEN of trimvar.
	101	!
[2008]	102	! 2007 2016-08-24 15:47:17Z kanani
	103	! Added support for new urban surface model (temporary modifications of
	104	! SELECT CASE ( ) necessary, see variable trimvar)
	105	!
[2001]	106	! 2000 2016-08-20 18:09:15Z knoop
	107	! Forced header and separation lines into 80 columns
	108	!
[1981]	109	! 1980 2016-07-29 15:51:57Z suehring
	110	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	111	! to .F.
	112	!
[1977]	113	! 1976 2016-07-27 13:28:04Z maronga
	114	! Output of radiation quantities is now done directly in the respective module
	115	!
[1973]	116	! 1972 2016-07-26 07:52:02Z maronga
	117	! Output of land surface quantities is now done directly in the respective module.
	118	! Unnecessary directive __parallel removed.
	119	!
[1961]	120	! 1960 2016-07-12 16:34:24Z suehring
	121	! Scalar surface flux added
	122	!
[1851]	123	! 1849 2016-04-08 11:33:18Z hoffmann
	124	! prr moved to arrays_3d
	125	!
[1823]	126	! 1822 2016-04-07 07:49:42Z hoffmann
	127	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	128	!
[1809]	129	! 1808 2016-04-05 19:44:00Z raasch
	130	! test output removed
	131	!
[1784]	132	! 1783 2016-03-06 18:36:17Z raasch
	133	! name change of netcdf routines and module + related changes
	134	!
[1746]	135	! 1745 2016-02-05 13:06:51Z gronemeier
	136	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	137	!
[1692]	138	! 1691 2015-10-26 16:17:44Z maronga
	139	! Added output of radiative heating rates for RRTMG
	140	!
[1683]	141	! 1682 2015-10-07 23:56:08Z knoop
	142	! Code annotations made doxygen readable
	143	!
[1586]	144	! 1585 2015-04-30 07:05:52Z maronga
	145	! Added support for RRTMG
	146	!
[1552]	147	! 1551 2015-03-03 14:18:16Z maronga
[1551]	148	! Added suppport for land surface model and radiation model output. In the course
	149	! of this action, the limits for vertical loops have been changed (from nzb and
	150	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	151	! Moreover, a new vertical grid zs was introduced.
[1329]	152	!
[1360]	153	! 1359 2014-04-11 17:15:14Z hoffmann
	154	! New particle structure integrated.
	155	!
[1354]	156	! 1353 2014-04-08 15:21:23Z heinze
	157	! REAL constants provided with KIND-attribute
	158	!
[1329]	159	! 1327 2014-03-21 11:00:16Z raasch
	160	! parts concerning avs output removed,
	161	! -netcdf output queries
	162	!
[1321]	163	! 1320 2014-03-20 08:40:49Z raasch
[1320]	164	! ONLY-attribute added to USE-statements,
	165	! kind-parameters added to all INTEGER and REAL declaration statements,
	166	! kinds are defined in new module kinds,
	167	! old module precision_kind is removed,
	168	! revision history before 2012 removed,
	169	! comment fields (!:) to be used for variable explanations added to
	170	! all variable declaration statements
[674]	171	!
[1319]	172	! 1318 2014-03-17 13:35:16Z raasch
	173	! barrier argument removed from cpu_log,
	174	! module interfaces removed
	175	!
[1309]	176	! 1308 2014-03-13 14:58:42Z fricke
	177	! Check, if the limit of the time dimension is exceeded for parallel output
	178	! To increase the performance for parallel output, the following is done:
	179	! - Update of time axis is only done by PE0
	180	!
[1245]	181	! 1244 2013-10-31 08:16:56Z raasch
	182	! Bugfix for index bounds in case of 3d-parallel output
	183	!
[1116]	184	! 1115 2013-03-26 18:16:16Z hoffmann
	185	! ql is calculated by calc_liquid_water_content
	186	!
[1107]	187	! 1106 2013-03-04 05:31:38Z raasch
	188	! array_kind renamed precision_kind
	189	!
[1077]	190	! 1076 2012-12-05 08:30:18Z hoffmann
	191	! Bugfix in output of ql
	192	!
[1054]	193	! 1053 2012-11-13 17:11:03Z hoffmann
	194	! +nr, qr, prr, qc and averaged quantities
	195	!
[1037]	196	! 1036 2012-10-22 13:43:42Z raasch
	197	! code put under GPL (PALM 3.9)
	198	!
[1035]	199	! 1031 2012-10-19 14:35:30Z raasch
	200	! netCDF4 without parallel file support implemented
	201	!
[1008]	202	! 1007 2012-09-19 14:30:36Z franke
	203	! Bugfix: missing calculation of ql_vp added
	204	!
[1]	205	! Revision 1.1 1997/09/03 06:29:36 raasch
	206	! Initial revision
	207	!
	208	!
	209	! Description:
	210	! ------------
[1682]	211	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	212	!------------------------------------------------------------------------------!
[1682]	213	SUBROUTINE data_output_3d( av )
	214
[1]	215
[1320]	216	USE arrays_3d, &
[3294]	217	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	218	tend, u, v, vpt, w
[3274]	219
[1]	220	USE averaging
[3274]	221
	222	USE basic_constants_and_equations_mod, &
	223	ONLY: lv_d_cp
	224
	225	USE bulk_cloud_model_mod, &
	226	ONLY: bulk_cloud_model, bcm_data_output_3d
	227
[2696]	228	USE chemistry_model_mod, &
	229	ONLY: chem_data_output_3d
	230
[1320]	231	USE control_parameters, &
[3274]	232	ONLY: air_chemistry, do3d, do3d_no, do3d_time_count, &
[2696]	233	io_blocks, io_group, land_surface, message_string, &
[3294]	234	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[2232]	235	psolver, simulated_time, time_since_reference_point, &
	236	urban_surface, varnamelength
[3274]	237
[1320]	238	USE cpulog, &
	239	ONLY: log_point, cpu_log
[2817]	240
	241	USE gust_mod, &
	242	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	243
[1320]	244	USE indices, &
[3241]	245	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	246	wall_flags_0
[3274]	247
[1320]	248	USE kinds
[3274]	249
[1551]	250	USE land_surface_model_mod, &
[2232]	251	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	252
[1783]	253	#if defined( __netcdf )
	254	USE NETCDF
	255	#endif
	256
	257	USE netcdf_interface, &
[2696]	258	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	259	netcdf_data_format, netcdf_handle_error
[1320]	260
[3294]	261	USE ocean_mod, &
	262	ONLY: ocean_data_output_3d
	263
[1320]	264	USE particle_attributes, &
[1359]	265	ONLY: grid_particles, number_of_particles, particles, &
	266	particle_advection_start, prt_count
[1320]	267
[1]	268	USE pegrid
	269
[2209]	270	USE plant_canopy_model_mod, &
[2746]	271	ONLY: pcm_data_output_3d
[2209]	272
[1585]	273	USE radiation_model_mod, &
[2696]	274	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	275
[3337]	276	USE biometeorology_mod, &
	277	ONLY: biometeorology_data_output_3d
	278
[2696]	279	USE turbulence_closure_mod, &
	280	ONLY: tcm_data_output_3d
	281
[2007]	282	USE urban_surface_mod, &
[2696]	283	ONLY: usm_data_output_3d
[1585]	284
[2007]	285
[1]	286	IMPLICIT NONE
	287
[1682]	288	INTEGER(iwp) :: av !<
[2696]	289	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	290	INTEGER(iwp) :: i !<
	291	INTEGER(iwp) :: if !<
	292	INTEGER(iwp) :: j !<
	293	INTEGER(iwp) :: k !<
	294	INTEGER(iwp) :: n !<
	295	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	296	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	297
[1682]	298	LOGICAL :: found !<
	299	LOGICAL :: resorted !<
[1]	300
[1682]	301	REAL(wp) :: mean_r !<
	302	REAL(wp) :: s_r2 !<
	303	REAL(wp) :: s_r3 !<
[1]	304
[1682]	305	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	306
[1682]	307	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	308
[2011]	309	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	310
[1]	311	!
	312	!-- Return, if nothing to output
	313	IF ( do3d_no(av) == 0 ) RETURN
	314
	315	CALL cpu_log (log_point(14),'data_output_3d','start')
	316
	317	!
	318	!-- Open output file.
[2512]	319	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	320	!-- own file and writes the data of its subdomain in binary format. After the
	321	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	322	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	323	IF ( netcdf_data_format < 5 ) THEN
[2967]	324	#if defined( __parallel )
[1327]	325	CALL check_open( 30 )
[2967]	326	#endif
[1327]	327	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	328	ELSE
[1327]	329	CALL check_open( 106+av*10 )
[493]	330	ENDIF
[1]	331
	332	!
[1745]	333	!-- For parallel netcdf output the time axis must be limited. Return, if this
	334	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	335	!-- the given end time by the length of the given output interval.
	336	IF ( netcdf_data_format > 4 ) THEN
	337	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	338	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	339	simulated_time, '&because the maximum ', &
[1745]	340	'number of output time levels is ', &
	341	'exceeded.'
	342	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	343	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	344	RETURN
	345	ENDIF
	346	ENDIF
	347
	348	!
[1031]	349	!-- Update the netCDF time axis
[1308]	350	!-- In case of parallel output, this is only done by PE0 to increase the
	351	!-- performance.
[1]	352	#if defined( __netcdf )
[1308]	353	do3d_time_count(av) = do3d_time_count(av) + 1
	354	IF ( myid == 0 ) THEN
[1327]	355	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	356	(/ time_since_reference_point /), &
	357	start = (/ do3d_time_count(av) /), &
	358	count = (/ 1 /) )
[1783]	359	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	360	ENDIF
	361	#endif
	362
	363	!
	364	!-- Loop over all variables to be written.
	365	if = 1
	366
	367	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	368
[1]	369	!
[2007]	370	!-- Temporary solution to account for data output within the new urban
	371	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	372	!-- Store the array chosen on the temporary array.
[2007]	373	trimvar = TRIM( do3d(av,if) )
[2011]	374	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	375	trimvar = 'usm_output'
	376	resorted = .TRUE.
	377	nzb_do = nzub
	378	nzt_do = nzut
	379	ELSE
	380	resorted = .FALSE.
	381	nzb_do = nzb
	382	nzt_do = nz_do3d
	383	ENDIF
[1551]	384	!
[1980]	385	!-- Set flag to steer output of radiation, land-surface, or user-defined
	386	!-- quantities
	387	found = .FALSE.
	388	!
[1551]	389	!-- Allocate a temporary array with the desired output dimensions.
[2512]	390	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	391	!
	392	!-- Before each output, set array local_pf to fill value
	393	local_pf = fill_value
	394	!
	395	!-- Set masking flag for topography for not resorted arrays
	396	flag_nr = 0
[1551]	397
[2007]	398	SELECT CASE ( trimvar )
[1]	399
	400	CASE ( 'e' )
	401	IF ( av == 0 ) THEN
	402	to_be_resorted => e
	403	ELSE
[3004]	404	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	405	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	406	e_av = REAL( fill_value, KIND = wp )
	407	ENDIF
[1]	408	to_be_resorted => e_av
	409	ENDIF
	410
[771]	411	CASE ( 'lpt' )
	412	IF ( av == 0 ) THEN
	413	to_be_resorted => pt
	414	ELSE
[3004]	415	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	416	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	417	lpt_av = REAL( fill_value, KIND = wp )
	418	ENDIF
[771]	419	to_be_resorted => lpt_av
	420	ENDIF
	421
[1]	422	CASE ( 'p' )
	423	IF ( av == 0 ) THEN
[727]	424	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	425	to_be_resorted => p
	426	ELSE
[3004]	427	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	428	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	429	p_av = REAL( fill_value, KIND = wp )
	430	ENDIF
[727]	431	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	432	to_be_resorted => p_av
	433	ENDIF
	434
	435	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	436	IF ( av == 0 ) THEN
[1359]	437	IF ( simulated_time >= particle_advection_start ) THEN
	438	tend = prt_count
	439	ELSE
	440	tend = 0.0_wp
	441	ENDIF
[2512]	442	DO i = nxl, nxr
	443	DO j = nys, nyn
[1551]	444	DO k = nzb_do, nzt_do
[1]	445	local_pf(i,j,k) = tend(k,j,i)
	446	ENDDO
	447	ENDDO
	448	ENDDO
	449	resorted = .TRUE.
	450	ELSE
[3004]	451	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	452	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	453	pc_av = REAL( fill_value, KIND = wp )
	454	ENDIF
[1]	455	to_be_resorted => pc_av
	456	ENDIF
	457
[1359]	458	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	459	IF ( av == 0 ) THEN
[1359]	460	IF ( simulated_time >= particle_advection_start ) THEN
	461	DO i = nxl, nxr
	462	DO j = nys, nyn
[1551]	463	DO k = nzb_do, nzt_do
[1359]	464	number_of_particles = prt_count(k,j,i)
	465	IF (number_of_particles <= 0) CYCLE
	466	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	467	s_r2 = 0.0_wp
	468	s_r3 = 0.0_wp
	469	DO n = 1, number_of_particles
	470	IF ( particles(n)%particle_mask ) THEN
	471	s_r2 = s_r2 + particles(n)%radius*2 &
	472	particles(n)%weight_factor
	473	s_r3 = s_r3 + particles(n)%radius*3 &
	474	particles(n)%weight_factor
	475	ENDIF
	476	ENDDO
	477	IF ( s_r2 > 0.0_wp ) THEN
	478	mean_r = s_r3 / s_r2
	479	ELSE
	480	mean_r = 0.0_wp
	481	ENDIF
	482	tend(k,j,i) = mean_r
[1]	483	ENDDO
	484	ENDDO
	485	ENDDO
[1359]	486	ELSE
	487	tend = 0.0_wp
	488	ENDIF
[2512]	489	DO i = nxl, nxr
	490	DO j = nys, nyn
[1551]	491	DO k = nzb_do, nzt_do
[1]	492	local_pf(i,j,k) = tend(k,j,i)
	493	ENDDO
	494	ENDDO
	495	ENDDO
	496	resorted = .TRUE.
	497	ELSE
[3004]	498	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	499	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	500	pr_av = REAL( fill_value, KIND = wp )
	501	ENDIF
[1]	502	to_be_resorted => pr_av
	503	ENDIF
	504
	505	CASE ( 'pt' )
	506	IF ( av == 0 ) THEN
[3274]	507	IF ( .NOT. bulk_cloud_model ) THEN
[1]	508	to_be_resorted => pt
	509	ELSE
[2512]	510	DO i = nxl, nxr
	511	DO j = nys, nyn
[1551]	512	DO k = nzb_do, nzt_do
[3274]	513	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	514	d_exner(k) * &
[1]	515	ql(k,j,i)
	516	ENDDO
	517	ENDDO
	518	ENDDO
	519	resorted = .TRUE.
	520	ENDIF
	521	ELSE
[3004]	522	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	523	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	524	pt_av = REAL( fill_value, KIND = wp )
	525	ENDIF
[1]	526	to_be_resorted => pt_av
	527	ENDIF
	528
	529	CASE ( 'q' )
	530	IF ( av == 0 ) THEN
	531	to_be_resorted => q
	532	ELSE
[3004]	533	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	534	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	535	q_av = REAL( fill_value, KIND = wp )
	536	ENDIF
[1]	537	to_be_resorted => q_av
	538	ENDIF
[691]	539
[1053]	540	CASE ( 'ql' )
	541	IF ( av == 0 ) THEN
[1115]	542	to_be_resorted => ql
[1053]	543	ELSE
[3004]	544	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	545	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	546	ql_av = REAL( fill_value, KIND = wp )
	547	ENDIF
[1115]	548	to_be_resorted => ql_av
[1053]	549	ENDIF
	550
[1]	551	CASE ( 'ql_c' )
	552	IF ( av == 0 ) THEN
	553	to_be_resorted => ql_c
	554	ELSE
[3004]	555	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	556	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	557	ql_c_av = REAL( fill_value, KIND = wp )
	558	ENDIF
[1]	559	to_be_resorted => ql_c_av
	560	ENDIF
	561
	562	CASE ( 'ql_v' )
	563	IF ( av == 0 ) THEN
	564	to_be_resorted => ql_v
	565	ELSE
[3004]	566	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	567	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	568	ql_v_av = REAL( fill_value, KIND = wp )
	569	ENDIF
[1]	570	to_be_resorted => ql_v_av
	571	ENDIF
	572
	573	CASE ( 'ql_vp' )
	574	IF ( av == 0 ) THEN
[1359]	575	IF ( simulated_time >= particle_advection_start ) THEN
	576	DO i = nxl, nxr
	577	DO j = nys, nyn
[1551]	578	DO k = nzb_do, nzt_do
[1359]	579	number_of_particles = prt_count(k,j,i)
	580	IF (number_of_particles <= 0) CYCLE
	581	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	582	DO n = 1, number_of_particles
	583	IF ( particles(n)%particle_mask ) THEN
	584	tend(k,j,i) = tend(k,j,i) + &
	585	particles(n)%weight_factor / &
	586	prt_count(k,j,i)
	587	ENDIF
	588	ENDDO
[1007]	589	ENDDO
	590	ENDDO
	591	ENDDO
[1359]	592	ELSE
	593	tend = 0.0_wp
	594	ENDIF
[2512]	595	DO i = nxl, nxr
	596	DO j = nys, nyn
[1551]	597	DO k = nzb_do, nzt_do
[1007]	598	local_pf(i,j,k) = tend(k,j,i)
	599	ENDDO
	600	ENDDO
	601	ENDDO
	602	resorted = .TRUE.
[1]	603	ELSE
[3004]	604	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	605	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	606	ql_vp_av = REAL( fill_value, KIND = wp )
	607	ENDIF
[1]	608	to_be_resorted => ql_vp_av
	609	ENDIF
	610
	611	CASE ( 'qv' )
	612	IF ( av == 0 ) THEN
[2512]	613	DO i = nxl, nxr
	614	DO j = nys, nyn
[1551]	615	DO k = nzb_do, nzt_do
[1]	616	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	617	ENDDO
	618	ENDDO
	619	ENDDO
	620	resorted = .TRUE.
	621	ELSE
[3004]	622	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	623	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	624	qv_av = REAL( fill_value, KIND = wp )
	625	ENDIF
[1]	626	to_be_resorted => qv_av
	627	ENDIF
	628
	629	CASE ( 's' )
	630	IF ( av == 0 ) THEN
[1960]	631	to_be_resorted => s
[1]	632	ELSE
[3004]	633	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	634	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	635	s_av = REAL( fill_value, KIND = wp )
	636	ENDIF
[355]	637	to_be_resorted => s_av
[1]	638	ENDIF
[691]	639
[1]	640	CASE ( 'u' )
[2696]	641	flag_nr = 1
[1]	642	IF ( av == 0 ) THEN
	643	to_be_resorted => u
	644	ELSE
[3004]	645	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	646	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	647	u_av = REAL( fill_value, KIND = wp )
	648	ENDIF
[1]	649	to_be_resorted => u_av
	650	ENDIF
	651
	652	CASE ( 'v' )
[2696]	653	flag_nr = 2
[1]	654	IF ( av == 0 ) THEN
	655	to_be_resorted => v
	656	ELSE
[3004]	657	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	658	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	659	v_av = REAL( fill_value, KIND = wp )
	660	ENDIF
[1]	661	to_be_resorted => v_av
	662	ENDIF
	663
	664	CASE ( 'vpt' )
	665	IF ( av == 0 ) THEN
	666	to_be_resorted => vpt
	667	ELSE
[3004]	668	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	669	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	670	vpt_av = REAL( fill_value, KIND = wp )
	671	ENDIF
[1]	672	to_be_resorted => vpt_av
	673	ENDIF
	674
	675	CASE ( 'w' )
[2696]	676	flag_nr = 3
[1]	677	IF ( av == 0 ) THEN
	678	to_be_resorted => w
	679	ELSE
[3004]	680	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	681	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	682	w_av = REAL( fill_value, KIND = wp )
	683	ENDIF
[1]	684	to_be_resorted => w_av
	685	ENDIF
[2007]	686	!
	687	!-- Block of urban surface model outputs
	688	CASE ( 'usm_output' )
[3274]	689	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
[2007]	690	nzb_do, nzt_do )
[1]	691
	692	CASE DEFAULT
[1972]	693
[1]	694	!
[3294]	695	!-- Quantities of other modules
[3274]	696	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
	697	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	698	nzb_do, nzt_do )
	699	resorted = .TRUE.
	700	ENDIF
	701
[3294]	702	IF ( .NOT. found .AND. air_chemistry ) THEN
	703	CALL chem_data_output_3d( av, do3d(av,if), found, &
	704	local_pf, fill_value, nzb_do, nzt_do )
	705	resorted = .TRUE.
	706	ENDIF
	707
	708	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	709	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	710	nzb_do, nzt_do )
	711	resorted = .TRUE.
	712	ENDIF
	713
[3274]	714	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	715	!
	716	!-- For soil model quantities, it is required to re-allocate local_pf
	717	nzb_do = nzb_soil
	718	nzt_do = nzt_soil
	719
	720	DEALLOCATE ( local_pf )
[2512]	721	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	722	local_pf = fill_value
[1972]	723
	724	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	725	resorted = .TRUE.
[1976]	726
	727	!
	728	!-- If no soil model variable was found, re-allocate local_pf
	729	IF ( .NOT. found ) THEN
	730	nzb_do = nzb
	731	nzt_do = nz_do3d
	732
	733	DEALLOCATE ( local_pf )
[2512]	734	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	735	ENDIF
	736
[1972]	737	ENDIF
	738
[3294]	739	IF ( .NOT. found .AND. ocean_mode ) THEN
	740	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
	741	nzb_do, nzt_do )
[1976]	742	resorted = .TRUE.
	743	ENDIF
	744
[3294]	745	IF ( .NOT. found .AND. plant_canopy ) THEN
	746	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	747	fill_value, nzb_do, nzt_do )
[2817]	748	resorted = .TRUE.
	749	ENDIF
	750
[3294]	751	IF ( .NOT. found .AND. radiation ) THEN
	752	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	753	local_pf, nzb_do, nzt_do )
[2696]	754	resorted = .TRUE.
	755	ENDIF
	756
[3337]	757	!
	758	!-- Biometeorology quantity
	759	IF ( .NOT. found .AND. radiation ) THEN
	760	CALL biometeorology_data_output_3d( av, do3d(av,if), found, &
	761	local_pf, nzb_do, nzt_do )
	762	resorted = .TRUE.
	763	ENDIF
	764
[3294]	765	IF ( .NOT. found ) THEN
	766	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	767	nzb_do, nzt_do )
[2209]	768	resorted = .TRUE.
	769	ENDIF
	770
	771	!
[3294]	772	!-- User defined quantities
[1972]	773	IF ( .NOT. found ) THEN
	774	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	775	nzb_do, nzt_do )
	776	resorted = .TRUE.
	777	ENDIF
[1]	778
[254]	779	IF ( .NOT. found ) THEN
[1320]	780	message_string = 'no output available for: ' // &
[274]	781	TRIM( do3d(av,if) )
[254]	782	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	783	ENDIF
	784
	785	END SELECT
	786
	787	!
	788	!-- Resort the array to be output, if not done above
	789	IF ( .NOT. resorted ) THEN
[2512]	790	DO i = nxl, nxr
	791	DO j = nys, nyn
[1551]	792	DO k = nzb_do, nzt_do
[2696]	793	local_pf(i,j,k) = MERGE( &
	794	to_be_resorted(k,j,i), &
	795	REAL( fill_value, KIND = wp ), &
	796	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	797	ENDDO
	798	ENDDO
	799	ENDDO
	800	ENDIF
	801
	802	!
[1327]	803	!-- Output of the 3D-array
	804	#if defined( __parallel )
	805	IF ( netcdf_data_format < 5 ) THEN
[1]	806	!
[1327]	807	!-- Non-parallel netCDF output. Data is output in parallel in
	808	!-- FORTRAN binary format here, and later collected into one file by
	809	!-- combine_plot_fields
	810	IF ( myid == 0 ) THEN
	811	WRITE ( 30 ) time_since_reference_point, &
	812	do3d_time_count(av), av
[1]	813	ENDIF
[1327]	814	DO i = 0, io_blocks-1
	815	IF ( i == io_group ) THEN
[2512]	816	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	817	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	818	ENDIF
[1972]	819
[1327]	820	CALL MPI_BARRIER( comm2d, ierr )
[1972]	821
[1327]	822	ENDDO
[559]	823
[1327]	824	ELSE
[646]	825	#if defined( __netcdf )
[493]	826	!
[1327]	827	!-- Parallel output in netCDF4/HDF5 format.
[2512]	828	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	829	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	830	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	831	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	832	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	833	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	834	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	835	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	836	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	837	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	838	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	839	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	840	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	841	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	842	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	843	! ELSE
[1327]	844	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	845	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	846	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	847	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	848	! ENDIF
[1783]	849	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	850	#endif
[1327]	851	ENDIF
[1]	852	#else
	853	#if defined( __netcdf )
[1327]	854	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	855	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	856	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	857	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	858	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	859	#endif
	860	#endif
	861
	862	if = if + 1
	863
	864	!
[1551]	865	!-- Deallocate temporary array
	866	DEALLOCATE ( local_pf )
[1]	867
[1551]	868	ENDDO
[1]	869
[1318]	870	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	871
	872	END SUBROUTINE data_output_3d

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