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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3121

Last change on this file since 3121 was 3049, checked in by Giersch, 7 years ago
Revision history corrected
Property svn:keywords set to `Id`
File size: 33.0 KB

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[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[3049]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3049 2018-05-29 13:52:36Z gronemeier $
[3049]	27	! Error messages revised
	28	!
	29	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	30	! Error message revised
	31	!
	32	! 3014 2018-05-09 08:42:38Z maronga
[3014]	33	! Added nzb_do and nzt_do for some modules for 3d output
	34	!
	35	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	36	! Allocation checks implemented (averaged data will be assigned to fill values
	37	! if no allocation happened so far)
	38	!
	39	! 2967 2018-04-13 11:22:08Z raasch
[2967]	40	! bugfix: missing parallel cpp-directives added
	41	!
	42	! 2817 2018-02-19 16:32:21Z knoop
[2817]	43	! Preliminary gust module interface implemented
	44	!
	45	! 2766 2018-01-22 17:17:47Z kanani
[2766]	46	! Removed preprocessor directive __chem
	47	!
	48	! 2756 2018-01-16 18:11:14Z suehring
[2756]	49	! Fill values for 3D output of chemical species introduced.
	50	!
	51	! 2746 2018-01-15 12:06:04Z suehring
[2746]	52	! Move flag plant canopy to modules
	53	!
	54	! 2718 2018-01-02 08:49:38Z maronga
[2716]	55	! Corrected "Former revisions" section
	56	!
	57	! 2696 2017-12-14 17:12:51Z kanani
	58	! Change in file header (GPL part)
[2696]	59	! Implementation of turbulence_closure_mod (TG)
	60	! Implementation of chemistry module (FK)
	61	! Set fill values at topography grid points or e.g. non-natural-type surface
	62	! in case of LSM output (MS)
	63	!
	64	! 2512 2017-10-04 08:26:59Z raasch
[2512]	65	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	66	! no output of ghost layer data
	67	!
	68	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	69	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	70	! includes two more prognostic equations for cloud drop concentration (nc)
	71	! and cloud water content (qc).
	72	!
	73	! 2233 2017-05-30 18:08:54Z suehring
[1552]	74	!
[2233]	75	! 2232 2017-05-30 17:47:52Z suehring
	76	! Adjustments to new topography concept
	77	!
[2210]	78	! 2209 2017-04-19 09:34:46Z kanani
	79	! Added plant canopy model output
	80	!
[2032]	81	! 2031 2016-10-21 15:11:58Z knoop
	82	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	83	!
[2012]	84	! 2011 2016-09-19 17:29:57Z kanani
	85	! Flag urban_surface is now defined in module control_parameters,
	86	! changed prefix for urban surface model output to "usm_",
	87	! introduced control parameter varnamelength for LEN of trimvar.
	88	!
[2008]	89	! 2007 2016-08-24 15:47:17Z kanani
	90	! Added support for new urban surface model (temporary modifications of
	91	! SELECT CASE ( ) necessary, see variable trimvar)
	92	!
[2001]	93	! 2000 2016-08-20 18:09:15Z knoop
	94	! Forced header and separation lines into 80 columns
	95	!
[1981]	96	! 1980 2016-07-29 15:51:57Z suehring
	97	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	98	! to .F.
	99	!
[1977]	100	! 1976 2016-07-27 13:28:04Z maronga
	101	! Output of radiation quantities is now done directly in the respective module
	102	!
[1973]	103	! 1972 2016-07-26 07:52:02Z maronga
	104	! Output of land surface quantities is now done directly in the respective module.
	105	! Unnecessary directive __parallel removed.
	106	!
[1961]	107	! 1960 2016-07-12 16:34:24Z suehring
	108	! Scalar surface flux added
	109	!
[1851]	110	! 1849 2016-04-08 11:33:18Z hoffmann
	111	! prr moved to arrays_3d
	112	!
[1823]	113	! 1822 2016-04-07 07:49:42Z hoffmann
	114	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	115	!
[1809]	116	! 1808 2016-04-05 19:44:00Z raasch
	117	! test output removed
	118	!
[1784]	119	! 1783 2016-03-06 18:36:17Z raasch
	120	! name change of netcdf routines and module + related changes
	121	!
[1746]	122	! 1745 2016-02-05 13:06:51Z gronemeier
	123	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	124	!
[1692]	125	! 1691 2015-10-26 16:17:44Z maronga
	126	! Added output of radiative heating rates for RRTMG
	127	!
[1683]	128	! 1682 2015-10-07 23:56:08Z knoop
	129	! Code annotations made doxygen readable
	130	!
[1586]	131	! 1585 2015-04-30 07:05:52Z maronga
	132	! Added support for RRTMG
	133	!
[1552]	134	! 1551 2015-03-03 14:18:16Z maronga
[1551]	135	! Added suppport for land surface model and radiation model output. In the course
	136	! of this action, the limits for vertical loops have been changed (from nzb and
	137	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	138	! Moreover, a new vertical grid zs was introduced.
[1329]	139	!
[1360]	140	! 1359 2014-04-11 17:15:14Z hoffmann
	141	! New particle structure integrated.
	142	!
[1354]	143	! 1353 2014-04-08 15:21:23Z heinze
	144	! REAL constants provided with KIND-attribute
	145	!
[1329]	146	! 1327 2014-03-21 11:00:16Z raasch
	147	! parts concerning avs output removed,
	148	! -netcdf output queries
	149	!
[1321]	150	! 1320 2014-03-20 08:40:49Z raasch
[1320]	151	! ONLY-attribute added to USE-statements,
	152	! kind-parameters added to all INTEGER and REAL declaration statements,
	153	! kinds are defined in new module kinds,
	154	! old module precision_kind is removed,
	155	! revision history before 2012 removed,
	156	! comment fields (!:) to be used for variable explanations added to
	157	! all variable declaration statements
[674]	158	!
[1319]	159	! 1318 2014-03-17 13:35:16Z raasch
	160	! barrier argument removed from cpu_log,
	161	! module interfaces removed
	162	!
[1309]	163	! 1308 2014-03-13 14:58:42Z fricke
	164	! Check, if the limit of the time dimension is exceeded for parallel output
	165	! To increase the performance for parallel output, the following is done:
	166	! - Update of time axis is only done by PE0
	167	!
[1245]	168	! 1244 2013-10-31 08:16:56Z raasch
	169	! Bugfix for index bounds in case of 3d-parallel output
	170	!
[1116]	171	! 1115 2013-03-26 18:16:16Z hoffmann
	172	! ql is calculated by calc_liquid_water_content
	173	!
[1107]	174	! 1106 2013-03-04 05:31:38Z raasch
	175	! array_kind renamed precision_kind
	176	!
[1077]	177	! 1076 2012-12-05 08:30:18Z hoffmann
	178	! Bugfix in output of ql
	179	!
[1054]	180	! 1053 2012-11-13 17:11:03Z hoffmann
	181	! +nr, qr, prr, qc and averaged quantities
	182	!
[1037]	183	! 1036 2012-10-22 13:43:42Z raasch
	184	! code put under GPL (PALM 3.9)
	185	!
[1035]	186	! 1031 2012-10-19 14:35:30Z raasch
	187	! netCDF4 without parallel file support implemented
	188	!
[1008]	189	! 1007 2012-09-19 14:30:36Z franke
	190	! Bugfix: missing calculation of ql_vp added
	191	!
[1]	192	! Revision 1.1 1997/09/03 06:29:36 raasch
	193	! Initial revision
	194	!
	195	!
	196	! Description:
	197	! ------------
[1682]	198	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	199	!------------------------------------------------------------------------------!
[1682]	200	SUBROUTINE data_output_3d( av )
	201
[1]	202
[1320]	203	USE arrays_3d, &
[2292]	204	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	205	sa, tend, u, v, vpt, w
[1320]	206
[1]	207	USE averaging
[1320]	208
[2696]	209	USE chemistry_model_mod, &
	210	ONLY: chem_data_output_3d
	211
[1320]	212	USE cloud_parameters, &
[1849]	213	ONLY: l_d_cp, pt_d_t
[1320]	214
	215	USE control_parameters, &
[2696]	216	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	217	io_blocks, io_group, land_surface, message_string, &
[2746]	218	ntdim_3d, nz_do3d, plant_canopy, &
[2232]	219	psolver, simulated_time, time_since_reference_point, &
	220	urban_surface, varnamelength
[1320]	221
	222	USE cpulog, &
	223	ONLY: log_point, cpu_log
[2817]	224
	225	USE gust_mod, &
	226	ONLY: gust_data_output_3d, gust_module_enabled
[1320]	227
	228	USE indices, &
[3004]	229	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	230	nzt, wall_flags_0
[1320]	231
	232	USE kinds
	233
[1551]	234	USE land_surface_model_mod, &
[2232]	235	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	236
[1783]	237	#if defined( __netcdf )
	238	USE NETCDF
	239	#endif
	240
	241	USE netcdf_interface, &
[2696]	242	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	243	netcdf_data_format, netcdf_handle_error
[1320]	244
	245	USE particle_attributes, &
[1359]	246	ONLY: grid_particles, number_of_particles, particles, &
	247	particle_advection_start, prt_count
[1320]	248
[1]	249	USE pegrid
	250
[2209]	251	USE plant_canopy_model_mod, &
[2746]	252	ONLY: pcm_data_output_3d
[2209]	253
[1585]	254	USE radiation_model_mod, &
[2696]	255	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	256
[2696]	257	USE turbulence_closure_mod, &
	258	ONLY: tcm_data_output_3d
	259
[2007]	260	USE urban_surface_mod, &
[2696]	261	ONLY: usm_data_output_3d
[1585]	262
[2007]	263
[1]	264	IMPLICIT NONE
	265
[1682]	266	INTEGER(iwp) :: av !<
[2696]	267	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	268	INTEGER(iwp) :: i !<
	269	INTEGER(iwp) :: if !<
	270	INTEGER(iwp) :: j !<
	271	INTEGER(iwp) :: k !<
	272	INTEGER(iwp) :: n !<
	273	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	274	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	275
[1682]	276	LOGICAL :: found !<
	277	LOGICAL :: resorted !<
[1]	278
[1682]	279	REAL(wp) :: mean_r !<
	280	REAL(wp) :: s_r2 !<
	281	REAL(wp) :: s_r3 !<
[1]	282
[1682]	283	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	284
[1682]	285	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	286
[2011]	287	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	288
[1]	289	!
	290	!-- Return, if nothing to output
	291	IF ( do3d_no(av) == 0 ) RETURN
	292
	293	CALL cpu_log (log_point(14),'data_output_3d','start')
	294
	295	!
	296	!-- Open output file.
[2512]	297	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	298	!-- own file and writes the data of its subdomain in binary format. After the
	299	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	300	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	301	IF ( netcdf_data_format < 5 ) THEN
[2967]	302	#if defined( __parallel )
[1327]	303	CALL check_open( 30 )
[2967]	304	#endif
[1327]	305	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	306	ELSE
[1327]	307	CALL check_open( 106+av*10 )
[493]	308	ENDIF
[1]	309
	310	!
[1745]	311	!-- For parallel netcdf output the time axis must be limited. Return, if this
	312	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	313	!-- the given end time by the length of the given output interval.
	314	IF ( netcdf_data_format > 4 ) THEN
	315	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	316	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	317	simulated_time, '&because the maximum ', &
[1745]	318	'number of output time levels is ', &
	319	'exceeded.'
	320	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	321	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	322	RETURN
	323	ENDIF
	324	ENDIF
	325
	326	!
[1031]	327	!-- Update the netCDF time axis
[1308]	328	!-- In case of parallel output, this is only done by PE0 to increase the
	329	!-- performance.
[1]	330	#if defined( __netcdf )
[1308]	331	do3d_time_count(av) = do3d_time_count(av) + 1
	332	IF ( myid == 0 ) THEN
[1327]	333	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	334	(/ time_since_reference_point /), &
	335	start = (/ do3d_time_count(av) /), &
	336	count = (/ 1 /) )
[1783]	337	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	338	ENDIF
	339	#endif
	340
	341	!
	342	!-- Loop over all variables to be written.
	343	if = 1
	344
	345	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	346
[1]	347	!
[2007]	348	!-- Temporary solution to account for data output within the new urban
	349	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	350	!-- Store the array chosen on the temporary array.
[2007]	351	trimvar = TRIM( do3d(av,if) )
[2011]	352	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	353	trimvar = 'usm_output'
	354	resorted = .TRUE.
	355	nzb_do = nzub
	356	nzt_do = nzut
	357	ELSE
	358	resorted = .FALSE.
	359	nzb_do = nzb
	360	nzt_do = nz_do3d
	361	ENDIF
[1551]	362	!
[1980]	363	!-- Set flag to steer output of radiation, land-surface, or user-defined
	364	!-- quantities
	365	found = .FALSE.
	366	!
[1551]	367	!-- Allocate a temporary array with the desired output dimensions.
[2512]	368	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	369	!
	370	!-- Before each output, set array local_pf to fill value
	371	local_pf = fill_value
	372	!
	373	!-- Set masking flag for topography for not resorted arrays
	374	flag_nr = 0
[1551]	375
[2007]	376	SELECT CASE ( trimvar )
[1]	377
	378	CASE ( 'e' )
	379	IF ( av == 0 ) THEN
	380	to_be_resorted => e
	381	ELSE
[3004]	382	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	383	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	384	e_av = REAL( fill_value, KIND = wp )
	385	ENDIF
[1]	386	to_be_resorted => e_av
	387	ENDIF
	388
[771]	389	CASE ( 'lpt' )
	390	IF ( av == 0 ) THEN
	391	to_be_resorted => pt
	392	ELSE
[3004]	393	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	394	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	395	lpt_av = REAL( fill_value, KIND = wp )
	396	ENDIF
[771]	397	to_be_resorted => lpt_av
	398	ENDIF
	399
[2292]	400	CASE ( 'nc' )
	401	IF ( av == 0 ) THEN
	402	to_be_resorted => nc
	403	ELSE
[3004]	404	IF ( .NOT. ALLOCATED( nc_av ) ) THEN
	405	ALLOCATE( nc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	406	nc_av = REAL( fill_value, KIND = wp )
	407	ENDIF
[2292]	408	to_be_resorted => nc_av
	409	ENDIF
	410
[1053]	411	CASE ( 'nr' )
	412	IF ( av == 0 ) THEN
	413	to_be_resorted => nr
	414	ELSE
[3004]	415	IF ( .NOT. ALLOCATED( nr_av ) ) THEN
	416	ALLOCATE( nr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	417	nr_av = REAL( fill_value, KIND = wp )
	418	ENDIF
[1053]	419	to_be_resorted => nr_av
	420	ENDIF
	421
[1]	422	CASE ( 'p' )
	423	IF ( av == 0 ) THEN
[727]	424	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	425	to_be_resorted => p
	426	ELSE
[3004]	427	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	428	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	429	p_av = REAL( fill_value, KIND = wp )
	430	ENDIF
[727]	431	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	432	to_be_resorted => p_av
	433	ENDIF
	434
	435	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	436	IF ( av == 0 ) THEN
[1359]	437	IF ( simulated_time >= particle_advection_start ) THEN
	438	tend = prt_count
	439	ELSE
	440	tend = 0.0_wp
	441	ENDIF
[2512]	442	DO i = nxl, nxr
	443	DO j = nys, nyn
[1551]	444	DO k = nzb_do, nzt_do
[1]	445	local_pf(i,j,k) = tend(k,j,i)
	446	ENDDO
	447	ENDDO
	448	ENDDO
	449	resorted = .TRUE.
	450	ELSE
[3004]	451	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	452	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	453	pc_av = REAL( fill_value, KIND = wp )
	454	ENDIF
[1]	455	to_be_resorted => pc_av
	456	ENDIF
	457
[1359]	458	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	459	IF ( av == 0 ) THEN
[1359]	460	IF ( simulated_time >= particle_advection_start ) THEN
	461	DO i = nxl, nxr
	462	DO j = nys, nyn
[1551]	463	DO k = nzb_do, nzt_do
[1359]	464	number_of_particles = prt_count(k,j,i)
	465	IF (number_of_particles <= 0) CYCLE
	466	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	467	s_r2 = 0.0_wp
	468	s_r3 = 0.0_wp
	469	DO n = 1, number_of_particles
	470	IF ( particles(n)%particle_mask ) THEN
	471	s_r2 = s_r2 + particles(n)%radius*2 &
	472	particles(n)%weight_factor
	473	s_r3 = s_r3 + particles(n)%radius*3 &
	474	particles(n)%weight_factor
	475	ENDIF
	476	ENDDO
	477	IF ( s_r2 > 0.0_wp ) THEN
	478	mean_r = s_r3 / s_r2
	479	ELSE
	480	mean_r = 0.0_wp
	481	ENDIF
	482	tend(k,j,i) = mean_r
[1]	483	ENDDO
	484	ENDDO
	485	ENDDO
[1359]	486	ELSE
	487	tend = 0.0_wp
	488	ENDIF
[2512]	489	DO i = nxl, nxr
	490	DO j = nys, nyn
[1551]	491	DO k = nzb_do, nzt_do
[1]	492	local_pf(i,j,k) = tend(k,j,i)
	493	ENDDO
	494	ENDDO
	495	ENDDO
	496	resorted = .TRUE.
	497	ELSE
[3004]	498	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	499	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	500	pr_av = REAL( fill_value, KIND = wp )
	501	ENDIF
[1]	502	to_be_resorted => pr_av
	503	ENDIF
	504
[1053]	505	CASE ( 'prr' )
	506	IF ( av == 0 ) THEN
[2512]	507	DO i = nxl, nxr
	508	DO j = nys, nyn
[1822]	509	DO k = nzb_do, nzt_do
[1053]	510	local_pf(i,j,k) = prr(k,j,i)
	511	ENDDO
	512	ENDDO
	513	ENDDO
	514	ELSE
[3004]	515	IF ( .NOT. ALLOCATED( prr_av ) ) THEN
	516	ALLOCATE( prr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	517	prr_av = REAL( fill_value, KIND = wp )
	518	ENDIF
[2512]	519	DO i = nxl, nxr
	520	DO j = nys, nyn
[1822]	521	DO k = nzb_do, nzt_do
[1053]	522	local_pf(i,j,k) = prr_av(k,j,i)
	523	ENDDO
	524	ENDDO
	525	ENDDO
	526	ENDIF
	527	resorted = .TRUE.
	528
[1]	529	CASE ( 'pt' )
	530	IF ( av == 0 ) THEN
	531	IF ( .NOT. cloud_physics ) THEN
	532	to_be_resorted => pt
	533	ELSE
[2512]	534	DO i = nxl, nxr
	535	DO j = nys, nyn
[1551]	536	DO k = nzb_do, nzt_do
[1320]	537	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	538	pt_d_t(k) * &
[1]	539	ql(k,j,i)
	540	ENDDO
	541	ENDDO
	542	ENDDO
	543	resorted = .TRUE.
	544	ENDIF
	545	ELSE
[3004]	546	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	547	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	548	pt_av = REAL( fill_value, KIND = wp )
	549	ENDIF
[1]	550	to_be_resorted => pt_av
	551	ENDIF
	552
	553	CASE ( 'q' )
	554	IF ( av == 0 ) THEN
	555	to_be_resorted => q
	556	ELSE
[3004]	557	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	558	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	559	q_av = REAL( fill_value, KIND = wp )
	560	ENDIF
[1]	561	to_be_resorted => q_av
	562	ENDIF
[691]	563
[1053]	564	CASE ( 'qc' )
[1]	565	IF ( av == 0 ) THEN
[1115]	566	to_be_resorted => qc
[1]	567	ELSE
[3004]	568	IF ( .NOT. ALLOCATED( qc_av ) ) THEN
	569	ALLOCATE( qc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	570	qc_av = REAL( fill_value, KIND = wp )
	571	ENDIF
[1115]	572	to_be_resorted => qc_av
[1]	573	ENDIF
	574
[1053]	575	CASE ( 'ql' )
	576	IF ( av == 0 ) THEN
[1115]	577	to_be_resorted => ql
[1053]	578	ELSE
[3004]	579	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	580	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	581	ql_av = REAL( fill_value, KIND = wp )
	582	ENDIF
[1115]	583	to_be_resorted => ql_av
[1053]	584	ENDIF
	585
[1]	586	CASE ( 'ql_c' )
	587	IF ( av == 0 ) THEN
	588	to_be_resorted => ql_c
	589	ELSE
[3004]	590	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	591	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	592	ql_c_av = REAL( fill_value, KIND = wp )
	593	ENDIF
[1]	594	to_be_resorted => ql_c_av
	595	ENDIF
	596
	597	CASE ( 'ql_v' )
	598	IF ( av == 0 ) THEN
	599	to_be_resorted => ql_v
	600	ELSE
[3004]	601	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	602	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	603	ql_v_av = REAL( fill_value, KIND = wp )
	604	ENDIF
[1]	605	to_be_resorted => ql_v_av
	606	ENDIF
	607
	608	CASE ( 'ql_vp' )
	609	IF ( av == 0 ) THEN
[1359]	610	IF ( simulated_time >= particle_advection_start ) THEN
	611	DO i = nxl, nxr
	612	DO j = nys, nyn
[1551]	613	DO k = nzb_do, nzt_do
[1359]	614	number_of_particles = prt_count(k,j,i)
	615	IF (number_of_particles <= 0) CYCLE
	616	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	617	DO n = 1, number_of_particles
	618	IF ( particles(n)%particle_mask ) THEN
	619	tend(k,j,i) = tend(k,j,i) + &
	620	particles(n)%weight_factor / &
	621	prt_count(k,j,i)
	622	ENDIF
	623	ENDDO
[1007]	624	ENDDO
	625	ENDDO
	626	ENDDO
[1359]	627	ELSE
	628	tend = 0.0_wp
	629	ENDIF
[2512]	630	DO i = nxl, nxr
	631	DO j = nys, nyn
[1551]	632	DO k = nzb_do, nzt_do
[1007]	633	local_pf(i,j,k) = tend(k,j,i)
	634	ENDDO
	635	ENDDO
	636	ENDDO
	637	resorted = .TRUE.
[1]	638	ELSE
[3004]	639	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	640	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	641	ql_vp_av = REAL( fill_value, KIND = wp )
	642	ENDIF
[1]	643	to_be_resorted => ql_vp_av
	644	ENDIF
	645
[1053]	646	CASE ( 'qr' )
	647	IF ( av == 0 ) THEN
	648	to_be_resorted => qr
	649	ELSE
[3004]	650	IF ( .NOT. ALLOCATED( qr_av ) ) THEN
	651	ALLOCATE( qr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	652	qr_av = REAL( fill_value, KIND = wp )
	653	ENDIF
[1053]	654	to_be_resorted => qr_av
	655	ENDIF
	656
[1]	657	CASE ( 'qv' )
	658	IF ( av == 0 ) THEN
[2512]	659	DO i = nxl, nxr
	660	DO j = nys, nyn
[1551]	661	DO k = nzb_do, nzt_do
[1]	662	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	663	ENDDO
	664	ENDDO
	665	ENDDO
	666	resorted = .TRUE.
	667	ELSE
[3004]	668	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	669	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	670	qv_av = REAL( fill_value, KIND = wp )
	671	ENDIF
[1]	672	to_be_resorted => qv_av
	673	ENDIF
	674
[2031]	675	CASE ( 'rho_ocean' )
[96]	676	IF ( av == 0 ) THEN
[2031]	677	to_be_resorted => rho_ocean
[96]	678	ELSE
[3004]	679	IF ( .NOT. ALLOCATED( rho_ocean_av ) ) THEN
	680	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	681	u_av = REAL( fill_value, KIND = wp )
	682	ENDIF
[2031]	683	to_be_resorted => rho_ocean_av
[96]	684	ENDIF
[691]	685
[1]	686	CASE ( 's' )
	687	IF ( av == 0 ) THEN
[1960]	688	to_be_resorted => s
[1]	689	ELSE
[3004]	690	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	691	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	692	s_av = REAL( fill_value, KIND = wp )
	693	ENDIF
[355]	694	to_be_resorted => s_av
[1]	695	ENDIF
[691]	696
[96]	697	CASE ( 'sa' )
	698	IF ( av == 0 ) THEN
	699	to_be_resorted => sa
	700	ELSE
[3004]	701	IF ( .NOT. ALLOCATED( sa_av ) ) THEN
	702	ALLOCATE( sa_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	703	sa_av = REAL( fill_value, KIND = wp )
	704	ENDIF
[96]	705	to_be_resorted => sa_av
	706	ENDIF
[691]	707
[1]	708	CASE ( 'u' )
[2696]	709	flag_nr = 1
[1]	710	IF ( av == 0 ) THEN
	711	to_be_resorted => u
	712	ELSE
[3004]	713	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	714	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	715	u_av = REAL( fill_value, KIND = wp )
	716	ENDIF
[1]	717	to_be_resorted => u_av
	718	ENDIF
	719
	720	CASE ( 'v' )
[2696]	721	flag_nr = 2
[1]	722	IF ( av == 0 ) THEN
	723	to_be_resorted => v
	724	ELSE
[3004]	725	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	726	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	727	v_av = REAL( fill_value, KIND = wp )
	728	ENDIF
[1]	729	to_be_resorted => v_av
	730	ENDIF
	731
	732	CASE ( 'vpt' )
	733	IF ( av == 0 ) THEN
	734	to_be_resorted => vpt
	735	ELSE
[3004]	736	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	737	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	738	vpt_av = REAL( fill_value, KIND = wp )
	739	ENDIF
[1]	740	to_be_resorted => vpt_av
	741	ENDIF
	742
	743	CASE ( 'w' )
[2696]	744	flag_nr = 3
[1]	745	IF ( av == 0 ) THEN
	746	to_be_resorted => w
	747	ELSE
[3004]	748	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	749	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	750	w_av = REAL( fill_value, KIND = wp )
	751	ENDIF
[1]	752	to_be_resorted => w_av
	753	ENDIF
[2007]	754	!
	755	!-- Block of urban surface model outputs
	756	CASE ( 'usm_output' )
	757	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	758	nzb_do, nzt_do )
[1]	759
	760	CASE DEFAULT
[1972]	761
[1]	762	!
[1972]	763	!-- Land surface quantity
	764	IF ( land_surface ) THEN
	765	!
	766	!-- For soil model quantities, it is required to re-allocate local_pf
	767	nzb_do = nzb_soil
	768	nzt_do = nzt_soil
	769
	770	DEALLOCATE ( local_pf )
[2512]	771	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	772	local_pf = fill_value
[1972]	773
	774	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	775	resorted = .TRUE.
[1976]	776
	777	!
	778	!-- If no soil model variable was found, re-allocate local_pf
	779	IF ( .NOT. found ) THEN
	780	nzb_do = nzb
	781	nzt_do = nz_do3d
	782
	783	DEALLOCATE ( local_pf )
[2512]	784	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	785	ENDIF
	786
[1972]	787	ENDIF
	788
[2696]	789	IF ( .NOT. found ) THEN
[3014]	790	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	791	nzb_do, nzt_do )
[2696]	792	resorted = .TRUE.
	793	ENDIF
	794
[1972]	795	!
[1976]	796	!-- Radiation quantity
	797	IF ( .NOT. found .AND. radiation ) THEN
	798	CALL radiation_data_output_3d( av, do3d(av,if), found, &
[3014]	799	local_pf, nzb_do, nzt_do )
[1976]	800	resorted = .TRUE.
	801	ENDIF
	802
	803	!
[2817]	804	!-- Gust module quantities
	805	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	806	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	807	nzb_do, nzt_do )
	808	resorted = .TRUE.
	809	ENDIF
	810
	811	!
[2696]	812	!-- Chemistry model output
	813	IF ( .NOT. found .AND. air_chemistry ) THEN
	814	CALL chem_data_output_3d( av, do3d(av,if), found, &
[3014]	815	local_pf, fill_value, nzb_do, nzt_do )
[2696]	816	resorted = .TRUE.
	817	ENDIF
	818
	819	!
[2209]	820	!-- Plant canopy model output
	821	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	822	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
[3014]	823	fill_value, nzb_do, nzt_do )
[2209]	824	resorted = .TRUE.
	825	ENDIF
	826
	827	!
[1]	828	!-- User defined quantity
[1972]	829	IF ( .NOT. found ) THEN
	830	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	831	nzb_do, nzt_do )
	832	resorted = .TRUE.
	833	ENDIF
[1]	834
[254]	835	IF ( .NOT. found ) THEN
[1320]	836	message_string = 'no output available for: ' // &
[274]	837	TRIM( do3d(av,if) )
[254]	838	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	839	ENDIF
	840
	841	END SELECT
	842
	843	!
	844	!-- Resort the array to be output, if not done above
	845	IF ( .NOT. resorted ) THEN
[2512]	846	DO i = nxl, nxr
	847	DO j = nys, nyn
[1551]	848	DO k = nzb_do, nzt_do
[2696]	849	local_pf(i,j,k) = MERGE( &
	850	to_be_resorted(k,j,i), &
	851	REAL( fill_value, KIND = wp ), &
	852	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	853	ENDDO
	854	ENDDO
	855	ENDDO
	856	ENDIF
	857
	858	!
[1327]	859	!-- Output of the 3D-array
	860	#if defined( __parallel )
	861	IF ( netcdf_data_format < 5 ) THEN
[1]	862	!
[1327]	863	!-- Non-parallel netCDF output. Data is output in parallel in
	864	!-- FORTRAN binary format here, and later collected into one file by
	865	!-- combine_plot_fields
	866	IF ( myid == 0 ) THEN
	867	WRITE ( 30 ) time_since_reference_point, &
	868	do3d_time_count(av), av
[1]	869	ENDIF
[1327]	870	DO i = 0, io_blocks-1
	871	IF ( i == io_group ) THEN
[2512]	872	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	873	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	874	ENDIF
[1972]	875
[1327]	876	CALL MPI_BARRIER( comm2d, ierr )
[1972]	877
[1327]	878	ENDDO
[559]	879
[1327]	880	ELSE
[646]	881	#if defined( __netcdf )
[493]	882	!
[1327]	883	!-- Parallel output in netCDF4/HDF5 format.
[2512]	884	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	885	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	886	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	887	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	888	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	889	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	890	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	891	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	892	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	893	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	894	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	895	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	896	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	897	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	898	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	899	! ELSE
[1327]	900	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	901	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	902	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	903	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	904	! ENDIF
[1783]	905	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	906	#endif
[1327]	907	ENDIF
[1]	908	#else
	909	#if defined( __netcdf )
[1327]	910	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	911	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	912	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	913	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	914	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	915	#endif
	916	#endif
	917
	918	if = if + 1
	919
	920	!
[1551]	921	!-- Deallocate temporary array
	922	DEALLOCATE ( local_pf )
[1]	923
[1551]	924	ENDDO
[1]	925
[1318]	926	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	927
	928	!
	929	!-- Formats.
[1320]	930	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	931	'label = ',A,A)
	932
	933	END SUBROUTINE data_output_3d

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