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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2746

Last change on this file since 2746 was 2746, checked in by suehring, 7 years ago
Read information from statitic driver for resolved vegetation independently from land- or urban-surface model
Property svn:keywords set to `Id`
File size: 27.0 KB

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[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 2746 2018-01-15 12:06:04Z suehring $
[2746]	27	! Move flag plant canopy to modules
	28	!
	29	! 2718 2018-01-02 08:49:38Z maronga
[2716]	30	! Corrected "Former revisions" section
	31	!
	32	! 2696 2017-12-14 17:12:51Z kanani
	33	! Change in file header (GPL part)
[2696]	34	! Implementation of turbulence_closure_mod (TG)
	35	! Implementation of chemistry module (FK)
	36	! Set fill values at topography grid points or e.g. non-natural-type surface
	37	! in case of LSM output (MS)
	38	!
	39	! 2512 2017-10-04 08:26:59Z raasch
[2512]	40	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	41	! no output of ghost layer data
	42	!
	43	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	44	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	45	! includes two more prognostic equations for cloud drop concentration (nc)
	46	! and cloud water content (qc).
	47	!
	48	! 2233 2017-05-30 18:08:54Z suehring
[1552]	49	!
[2233]	50	! 2232 2017-05-30 17:47:52Z suehring
	51	! Adjustments to new topography concept
	52	!
[2210]	53	! 2209 2017-04-19 09:34:46Z kanani
	54	! Added plant canopy model output
	55	!
[2032]	56	! 2031 2016-10-21 15:11:58Z knoop
	57	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	58	!
[2012]	59	! 2011 2016-09-19 17:29:57Z kanani
	60	! Flag urban_surface is now defined in module control_parameters,
	61	! changed prefix for urban surface model output to "usm_",
	62	! introduced control parameter varnamelength for LEN of trimvar.
	63	!
[2008]	64	! 2007 2016-08-24 15:47:17Z kanani
	65	! Added support for new urban surface model (temporary modifications of
	66	! SELECT CASE ( ) necessary, see variable trimvar)
	67	!
[2001]	68	! 2000 2016-08-20 18:09:15Z knoop
	69	! Forced header and separation lines into 80 columns
	70	!
[1981]	71	! 1980 2016-07-29 15:51:57Z suehring
	72	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	73	! to .F.
	74	!
[1977]	75	! 1976 2016-07-27 13:28:04Z maronga
	76	! Output of radiation quantities is now done directly in the respective module
	77	!
[1973]	78	! 1972 2016-07-26 07:52:02Z maronga
	79	! Output of land surface quantities is now done directly in the respective module.
	80	! Unnecessary directive __parallel removed.
	81	!
[1961]	82	! 1960 2016-07-12 16:34:24Z suehring
	83	! Scalar surface flux added
	84	!
[1851]	85	! 1849 2016-04-08 11:33:18Z hoffmann
	86	! prr moved to arrays_3d
	87	!
[1823]	88	! 1822 2016-04-07 07:49:42Z hoffmann
	89	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	90	!
[1809]	91	! 1808 2016-04-05 19:44:00Z raasch
	92	! test output removed
	93	!
[1784]	94	! 1783 2016-03-06 18:36:17Z raasch
	95	! name change of netcdf routines and module + related changes
	96	!
[1746]	97	! 1745 2016-02-05 13:06:51Z gronemeier
	98	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	99	!
[1692]	100	! 1691 2015-10-26 16:17:44Z maronga
	101	! Added output of radiative heating rates for RRTMG
	102	!
[1683]	103	! 1682 2015-10-07 23:56:08Z knoop
	104	! Code annotations made doxygen readable
	105	!
[1586]	106	! 1585 2015-04-30 07:05:52Z maronga
	107	! Added support for RRTMG
	108	!
[1552]	109	! 1551 2015-03-03 14:18:16Z maronga
[1551]	110	! Added suppport for land surface model and radiation model output. In the course
	111	! of this action, the limits for vertical loops have been changed (from nzb and
	112	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	113	! Moreover, a new vertical grid zs was introduced.
[1329]	114	!
[1360]	115	! 1359 2014-04-11 17:15:14Z hoffmann
	116	! New particle structure integrated.
	117	!
[1354]	118	! 1353 2014-04-08 15:21:23Z heinze
	119	! REAL constants provided with KIND-attribute
	120	!
[1329]	121	! 1327 2014-03-21 11:00:16Z raasch
	122	! parts concerning avs output removed,
	123	! -netcdf output queries
	124	!
[1321]	125	! 1320 2014-03-20 08:40:49Z raasch
[1320]	126	! ONLY-attribute added to USE-statements,
	127	! kind-parameters added to all INTEGER and REAL declaration statements,
	128	! kinds are defined in new module kinds,
	129	! old module precision_kind is removed,
	130	! revision history before 2012 removed,
	131	! comment fields (!:) to be used for variable explanations added to
	132	! all variable declaration statements
[674]	133	!
[1319]	134	! 1318 2014-03-17 13:35:16Z raasch
	135	! barrier argument removed from cpu_log,
	136	! module interfaces removed
	137	!
[1309]	138	! 1308 2014-03-13 14:58:42Z fricke
	139	! Check, if the limit of the time dimension is exceeded for parallel output
	140	! To increase the performance for parallel output, the following is done:
	141	! - Update of time axis is only done by PE0
	142	!
[1245]	143	! 1244 2013-10-31 08:16:56Z raasch
	144	! Bugfix for index bounds in case of 3d-parallel output
	145	!
[1116]	146	! 1115 2013-03-26 18:16:16Z hoffmann
	147	! ql is calculated by calc_liquid_water_content
	148	!
[1107]	149	! 1106 2013-03-04 05:31:38Z raasch
	150	! array_kind renamed precision_kind
	151	!
[1077]	152	! 1076 2012-12-05 08:30:18Z hoffmann
	153	! Bugfix in output of ql
	154	!
[1054]	155	! 1053 2012-11-13 17:11:03Z hoffmann
	156	! +nr, qr, prr, qc and averaged quantities
	157	!
[1037]	158	! 1036 2012-10-22 13:43:42Z raasch
	159	! code put under GPL (PALM 3.9)
	160	!
[1035]	161	! 1031 2012-10-19 14:35:30Z raasch
	162	! netCDF4 without parallel file support implemented
	163	!
[1008]	164	! 1007 2012-09-19 14:30:36Z franke
	165	! Bugfix: missing calculation of ql_vp added
	166	!
[1]	167	! Revision 1.1 1997/09/03 06:29:36 raasch
	168	! Initial revision
	169	!
	170	!
	171	! Description:
	172	! ------------
[1682]	173	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	174	!------------------------------------------------------------------------------!
[1682]	175	SUBROUTINE data_output_3d( av )
	176
[1]	177
[1320]	178	USE arrays_3d, &
[2292]	179	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	180	sa, tend, u, v, vpt, w
[1320]	181
[1]	182	USE averaging
[1320]	183
[2696]	184	#if defined( __chem )
	185	USE chemistry_model_mod, &
	186	ONLY: chem_data_output_3d
	187	#endif
	188
[1320]	189	USE cloud_parameters, &
[1849]	190	ONLY: l_d_cp, pt_d_t
[1320]	191
	192	USE control_parameters, &
[2696]	193	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	194	io_blocks, io_group, land_surface, message_string, &
[2746]	195	ntdim_3d, nz_do3d, plant_canopy, &
[2232]	196	psolver, simulated_time, time_since_reference_point, &
	197	urban_surface, varnamelength
[1320]	198
	199	USE cpulog, &
	200	ONLY: log_point, cpu_log
	201
	202	USE indices, &
[2696]	203	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb, wall_flags_0
[1320]	204
	205	USE kinds
	206
[1551]	207	USE land_surface_model_mod, &
[2232]	208	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	209
[1783]	210	#if defined( __netcdf )
	211	USE NETCDF
	212	#endif
	213
	214	USE netcdf_interface, &
[2696]	215	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	216	netcdf_data_format, netcdf_handle_error
[1320]	217
	218	USE particle_attributes, &
[1359]	219	ONLY: grid_particles, number_of_particles, particles, &
	220	particle_advection_start, prt_count
[1320]	221
[1]	222	USE pegrid
	223
[2209]	224	USE plant_canopy_model_mod, &
[2746]	225	ONLY: pcm_data_output_3d
[2209]	226
[1585]	227	USE radiation_model_mod, &
[2696]	228	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	229
[2696]	230	USE turbulence_closure_mod, &
	231	ONLY: tcm_data_output_3d
	232
[2007]	233	USE urban_surface_mod, &
[2696]	234	ONLY: usm_data_output_3d
[1585]	235
[2007]	236
[1]	237	IMPLICIT NONE
	238
[1682]	239	INTEGER(iwp) :: av !<
[2696]	240	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	241	INTEGER(iwp) :: i !<
	242	INTEGER(iwp) :: if !<
	243	INTEGER(iwp) :: j !<
	244	INTEGER(iwp) :: k !<
	245	INTEGER(iwp) :: n !<
	246	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	247	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	248
[1682]	249	LOGICAL :: found !<
	250	LOGICAL :: resorted !<
[1]	251
[1682]	252	REAL(wp) :: mean_r !<
	253	REAL(wp) :: s_r2 !<
	254	REAL(wp) :: s_r3 !<
[1]	255
[1682]	256	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	257
[1682]	258	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	259
[2011]	260	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	261
[1]	262	!
	263	!-- Return, if nothing to output
	264	IF ( do3d_no(av) == 0 ) RETURN
	265
	266	CALL cpu_log (log_point(14),'data_output_3d','start')
	267
	268	!
	269	!-- Open output file.
[2512]	270	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	271	!-- own file and writes the data of its subdomain in binary format. After the
	272	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	273	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	274	IF ( netcdf_data_format < 5 ) THEN
	275	CALL check_open( 30 )
	276	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	277	ELSE
[1327]	278	CALL check_open( 106+av*10 )
[493]	279	ENDIF
[1]	280
	281	!
[1745]	282	!-- For parallel netcdf output the time axis must be limited. Return, if this
	283	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	284	!-- the given end time by the length of the given output interval.
	285	IF ( netcdf_data_format > 4 ) THEN
	286	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	287	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	288	simulated_time, '&because the maximum ', &
	289	'number of output time levels is ', &
	290	'exceeded.'
	291	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	292	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	293	RETURN
	294	ENDIF
	295	ENDIF
	296
	297	!
[1031]	298	!-- Update the netCDF time axis
[1308]	299	!-- In case of parallel output, this is only done by PE0 to increase the
	300	!-- performance.
[1]	301	#if defined( __netcdf )
[1308]	302	do3d_time_count(av) = do3d_time_count(av) + 1
	303	IF ( myid == 0 ) THEN
[1327]	304	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	305	(/ time_since_reference_point /), &
	306	start = (/ do3d_time_count(av) /), &
	307	count = (/ 1 /) )
[1783]	308	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	309	ENDIF
	310	#endif
	311
	312	!
	313	!-- Loop over all variables to be written.
	314	if = 1
	315
	316	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	317
[1]	318	!
[2007]	319	!-- Temporary solution to account for data output within the new urban
	320	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	321	!-- Store the array chosen on the temporary array.
[2007]	322	trimvar = TRIM( do3d(av,if) )
[2011]	323	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	324	trimvar = 'usm_output'
	325	resorted = .TRUE.
	326	nzb_do = nzub
	327	nzt_do = nzut
	328	ELSE
	329	resorted = .FALSE.
	330	nzb_do = nzb
	331	nzt_do = nz_do3d
	332	ENDIF
[1551]	333	!
[1980]	334	!-- Set flag to steer output of radiation, land-surface, or user-defined
	335	!-- quantities
	336	found = .FALSE.
	337	!
[1551]	338	!-- Allocate a temporary array with the desired output dimensions.
[2512]	339	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	340	!
	341	!-- Before each output, set array local_pf to fill value
	342	local_pf = fill_value
	343	!
	344	!-- Set masking flag for topography for not resorted arrays
	345	flag_nr = 0
[1551]	346
[2007]	347	SELECT CASE ( trimvar )
[1]	348
	349	CASE ( 'e' )
	350	IF ( av == 0 ) THEN
	351	to_be_resorted => e
	352	ELSE
	353	to_be_resorted => e_av
	354	ENDIF
	355
[771]	356	CASE ( 'lpt' )
	357	IF ( av == 0 ) THEN
	358	to_be_resorted => pt
	359	ELSE
	360	to_be_resorted => lpt_av
	361	ENDIF
	362
[2292]	363	CASE ( 'nc' )
	364	IF ( av == 0 ) THEN
	365	to_be_resorted => nc
	366	ELSE
	367	to_be_resorted => nc_av
	368	ENDIF
	369
[1053]	370	CASE ( 'nr' )
	371	IF ( av == 0 ) THEN
	372	to_be_resorted => nr
	373	ELSE
	374	to_be_resorted => nr_av
	375	ENDIF
	376
[1]	377	CASE ( 'p' )
	378	IF ( av == 0 ) THEN
[727]	379	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	380	to_be_resorted => p
	381	ELSE
[727]	382	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	383	to_be_resorted => p_av
	384	ENDIF
	385
	386	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	387	IF ( av == 0 ) THEN
[1359]	388	IF ( simulated_time >= particle_advection_start ) THEN
	389	tend = prt_count
	390	ELSE
	391	tend = 0.0_wp
	392	ENDIF
[2512]	393	DO i = nxl, nxr
	394	DO j = nys, nyn
[1551]	395	DO k = nzb_do, nzt_do
[1]	396	local_pf(i,j,k) = tend(k,j,i)
	397	ENDDO
	398	ENDDO
	399	ENDDO
	400	resorted = .TRUE.
	401	ELSE
	402	to_be_resorted => pc_av
	403	ENDIF
	404
[1359]	405	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	406	IF ( av == 0 ) THEN
[1359]	407	IF ( simulated_time >= particle_advection_start ) THEN
	408	DO i = nxl, nxr
	409	DO j = nys, nyn
[1551]	410	DO k = nzb_do, nzt_do
[1359]	411	number_of_particles = prt_count(k,j,i)
	412	IF (number_of_particles <= 0) CYCLE
	413	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	414	s_r2 = 0.0_wp
	415	s_r3 = 0.0_wp
	416	DO n = 1, number_of_particles
	417	IF ( particles(n)%particle_mask ) THEN
	418	s_r2 = s_r2 + particles(n)%radius*2 &
	419	particles(n)%weight_factor
	420	s_r3 = s_r3 + particles(n)%radius*3 &
	421	particles(n)%weight_factor
	422	ENDIF
	423	ENDDO
	424	IF ( s_r2 > 0.0_wp ) THEN
	425	mean_r = s_r3 / s_r2
	426	ELSE
	427	mean_r = 0.0_wp
	428	ENDIF
	429	tend(k,j,i) = mean_r
[1]	430	ENDDO
	431	ENDDO
	432	ENDDO
[1359]	433	ELSE
	434	tend = 0.0_wp
	435	ENDIF
[2512]	436	DO i = nxl, nxr
	437	DO j = nys, nyn
[1551]	438	DO k = nzb_do, nzt_do
[1]	439	local_pf(i,j,k) = tend(k,j,i)
	440	ENDDO
	441	ENDDO
	442	ENDDO
	443	resorted = .TRUE.
	444	ELSE
	445	to_be_resorted => pr_av
	446	ENDIF
	447
[1053]	448	CASE ( 'prr' )
	449	IF ( av == 0 ) THEN
[2512]	450	DO i = nxl, nxr
	451	DO j = nys, nyn
[1822]	452	DO k = nzb_do, nzt_do
[1053]	453	local_pf(i,j,k) = prr(k,j,i)
	454	ENDDO
	455	ENDDO
	456	ENDDO
	457	ELSE
[2512]	458	DO i = nxl, nxr
	459	DO j = nys, nyn
[1822]	460	DO k = nzb_do, nzt_do
[1053]	461	local_pf(i,j,k) = prr_av(k,j,i)
	462	ENDDO
	463	ENDDO
	464	ENDDO
	465	ENDIF
	466	resorted = .TRUE.
	467
[1]	468	CASE ( 'pt' )
	469	IF ( av == 0 ) THEN
	470	IF ( .NOT. cloud_physics ) THEN
	471	to_be_resorted => pt
	472	ELSE
[2512]	473	DO i = nxl, nxr
	474	DO j = nys, nyn
[1551]	475	DO k = nzb_do, nzt_do
[1320]	476	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	477	pt_d_t(k) * &
[1]	478	ql(k,j,i)
	479	ENDDO
	480	ENDDO
	481	ENDDO
	482	resorted = .TRUE.
	483	ENDIF
	484	ELSE
	485	to_be_resorted => pt_av
	486	ENDIF
	487
	488	CASE ( 'q' )
	489	IF ( av == 0 ) THEN
	490	to_be_resorted => q
	491	ELSE
	492	to_be_resorted => q_av
	493	ENDIF
[691]	494
[1053]	495	CASE ( 'qc' )
[1]	496	IF ( av == 0 ) THEN
[1115]	497	to_be_resorted => qc
[1]	498	ELSE
[1115]	499	to_be_resorted => qc_av
[1]	500	ENDIF
	501
[1053]	502	CASE ( 'ql' )
	503	IF ( av == 0 ) THEN
[1115]	504	to_be_resorted => ql
[1053]	505	ELSE
[1115]	506	to_be_resorted => ql_av
[1053]	507	ENDIF
	508
[1]	509	CASE ( 'ql_c' )
	510	IF ( av == 0 ) THEN
	511	to_be_resorted => ql_c
	512	ELSE
	513	to_be_resorted => ql_c_av
	514	ENDIF
	515
	516	CASE ( 'ql_v' )
	517	IF ( av == 0 ) THEN
	518	to_be_resorted => ql_v
	519	ELSE
	520	to_be_resorted => ql_v_av
	521	ENDIF
	522
	523	CASE ( 'ql_vp' )
	524	IF ( av == 0 ) THEN
[1359]	525	IF ( simulated_time >= particle_advection_start ) THEN
	526	DO i = nxl, nxr
	527	DO j = nys, nyn
[1551]	528	DO k = nzb_do, nzt_do
[1359]	529	number_of_particles = prt_count(k,j,i)
	530	IF (number_of_particles <= 0) CYCLE
	531	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	532	DO n = 1, number_of_particles
	533	IF ( particles(n)%particle_mask ) THEN
	534	tend(k,j,i) = tend(k,j,i) + &
	535	particles(n)%weight_factor / &
	536	prt_count(k,j,i)
	537	ENDIF
	538	ENDDO
[1007]	539	ENDDO
	540	ENDDO
	541	ENDDO
[1359]	542	ELSE
	543	tend = 0.0_wp
	544	ENDIF
[2512]	545	DO i = nxl, nxr
	546	DO j = nys, nyn
[1551]	547	DO k = nzb_do, nzt_do
[1007]	548	local_pf(i,j,k) = tend(k,j,i)
	549	ENDDO
	550	ENDDO
	551	ENDDO
	552	resorted = .TRUE.
[1]	553	ELSE
	554	to_be_resorted => ql_vp_av
	555	ENDIF
	556
[1053]	557	CASE ( 'qr' )
	558	IF ( av == 0 ) THEN
	559	to_be_resorted => qr
	560	ELSE
	561	to_be_resorted => qr_av
	562	ENDIF
	563
[1]	564	CASE ( 'qv' )
	565	IF ( av == 0 ) THEN
[2512]	566	DO i = nxl, nxr
	567	DO j = nys, nyn
[1551]	568	DO k = nzb_do, nzt_do
[1]	569	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	570	ENDDO
	571	ENDDO
	572	ENDDO
	573	resorted = .TRUE.
	574	ELSE
	575	to_be_resorted => qv_av
	576	ENDIF
	577
[2031]	578	CASE ( 'rho_ocean' )
[96]	579	IF ( av == 0 ) THEN
[2031]	580	to_be_resorted => rho_ocean
[96]	581	ELSE
[2031]	582	to_be_resorted => rho_ocean_av
[96]	583	ENDIF
[691]	584
[1]	585	CASE ( 's' )
	586	IF ( av == 0 ) THEN
[1960]	587	to_be_resorted => s
[1]	588	ELSE
[355]	589	to_be_resorted => s_av
[1]	590	ENDIF
[691]	591
[96]	592	CASE ( 'sa' )
	593	IF ( av == 0 ) THEN
	594	to_be_resorted => sa
	595	ELSE
	596	to_be_resorted => sa_av
	597	ENDIF
[691]	598
[1]	599	CASE ( 'u' )
[2696]	600	flag_nr = 1
[1]	601	IF ( av == 0 ) THEN
	602	to_be_resorted => u
	603	ELSE
	604	to_be_resorted => u_av
	605	ENDIF
	606
	607	CASE ( 'v' )
[2696]	608	flag_nr = 2
[1]	609	IF ( av == 0 ) THEN
	610	to_be_resorted => v
	611	ELSE
	612	to_be_resorted => v_av
	613	ENDIF
	614
	615	CASE ( 'vpt' )
	616	IF ( av == 0 ) THEN
	617	to_be_resorted => vpt
	618	ELSE
	619	to_be_resorted => vpt_av
	620	ENDIF
	621
	622	CASE ( 'w' )
[2696]	623	flag_nr = 3
[1]	624	IF ( av == 0 ) THEN
	625	to_be_resorted => w
	626	ELSE
	627	to_be_resorted => w_av
	628	ENDIF
[2007]	629	!
	630	!-- Block of urban surface model outputs
	631	CASE ( 'usm_output' )
	632	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	633	nzb_do, nzt_do )
[1]	634
	635	CASE DEFAULT
[1972]	636
[1]	637	!
[1972]	638	!-- Land surface quantity
	639	IF ( land_surface ) THEN
	640	!
	641	!-- For soil model quantities, it is required to re-allocate local_pf
	642	nzb_do = nzb_soil
	643	nzt_do = nzt_soil
	644
	645	DEALLOCATE ( local_pf )
[2512]	646	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	647	local_pf = fill_value
[1972]	648
	649	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	650	resorted = .TRUE.
[1976]	651
	652	!
	653	!-- If no soil model variable was found, re-allocate local_pf
	654	IF ( .NOT. found ) THEN
	655	nzb_do = nzb
	656	nzt_do = nz_do3d
	657
	658	DEALLOCATE ( local_pf )
[2512]	659	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	660	ENDIF
	661
[1972]	662	ENDIF
	663
[2696]	664	IF ( .NOT. found ) THEN
	665	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
	666	resorted = .TRUE.
	667	ENDIF
	668
[1972]	669	!
[1976]	670	!-- Radiation quantity
	671	IF ( .NOT. found .AND. radiation ) THEN
	672	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	673	local_pf )
	674	resorted = .TRUE.
	675	ENDIF
	676
	677	!
[2696]	678	!-- Chemistry model output
	679	#if defined( __chem )
	680	IF ( .NOT. found .AND. air_chemistry ) THEN
	681	CALL chem_data_output_3d( av, do3d(av,if), found, &
	682	local_pf )
	683	resorted = .TRUE.
	684	ENDIF
	685	#endif
	686
	687	!
[2209]	688	!-- Plant canopy model output
	689	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	690	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	691	fill_value )
[2209]	692	resorted = .TRUE.
	693	ENDIF
	694
	695	!
[1]	696	!-- User defined quantity
[1972]	697	IF ( .NOT. found ) THEN
	698	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	699	nzb_do, nzt_do )
	700	resorted = .TRUE.
	701	ENDIF
[1]	702
[254]	703	IF ( .NOT. found ) THEN
[1320]	704	message_string = 'no output available for: ' // &
[274]	705	TRIM( do3d(av,if) )
[254]	706	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	707	ENDIF
	708
	709	END SELECT
	710
	711	!
	712	!-- Resort the array to be output, if not done above
	713	IF ( .NOT. resorted ) THEN
[2512]	714	DO i = nxl, nxr
	715	DO j = nys, nyn
[1551]	716	DO k = nzb_do, nzt_do
[2696]	717	local_pf(i,j,k) = MERGE( &
	718	to_be_resorted(k,j,i), &
	719	REAL( fill_value, KIND = wp ), &
	720	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	721	ENDDO
	722	ENDDO
	723	ENDDO
	724	ENDIF
	725
	726	!
[1327]	727	!-- Output of the 3D-array
	728	#if defined( __parallel )
	729	IF ( netcdf_data_format < 5 ) THEN
[1]	730	!
[1327]	731	!-- Non-parallel netCDF output. Data is output in parallel in
	732	!-- FORTRAN binary format here, and later collected into one file by
	733	!-- combine_plot_fields
	734	IF ( myid == 0 ) THEN
	735	WRITE ( 30 ) time_since_reference_point, &
	736	do3d_time_count(av), av
[1]	737	ENDIF
[1327]	738	DO i = 0, io_blocks-1
	739	IF ( i == io_group ) THEN
[2512]	740	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	741	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	742	ENDIF
[1972]	743
[1327]	744	CALL MPI_BARRIER( comm2d, ierr )
[1972]	745
[1327]	746	ENDDO
[559]	747
[1327]	748	ELSE
[646]	749	#if defined( __netcdf )
[493]	750	!
[1327]	751	!-- Parallel output in netCDF4/HDF5 format.
[2512]	752	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	753	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	754	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	755	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	756	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	757	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	758	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	759	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	760	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	761	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	762	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	763	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	764	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	765	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	766	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	767	! ELSE
[1327]	768	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	769	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	770	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	771	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	772	! ENDIF
[1783]	773	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	774	#endif
[1327]	775	ENDIF
[1]	776	#else
	777	#if defined( __netcdf )
[1327]	778	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	779	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	780	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	781	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	782	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	783	#endif
	784	#endif
	785
	786	if = if + 1
	787
	788	!
[1551]	789	!-- Deallocate temporary array
	790	DEALLOCATE ( local_pf )
[1]	791
[1551]	792	ENDDO
[1]	793
[1318]	794	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	795
	796	!
	797	!-- Formats.
[1320]	798	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	799	'label = ',A,A)
	800
	801	END SUBROUTINE data_output_3d

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