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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2714

Last change on this file since 2714 was 2696, checked in by kanani, 7 years ago
Merge of branch palm4u into trunk
Property svn:keywords set to `Id`
File size: 26.9 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2101]	17	! Copyright 1997-2017 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 2696 2017-12-14 17:12:51Z raasch $
[2696]	27	! Implementation of turbulence_closure_mod (TG)
	28	! Implementation of chemistry module (FK)
	29	! Set fill values at topography grid points or e.g. non-natural-type surface
	30	! in case of LSM output (MS)
	31	!
	32	! 2512 2017-10-04 08:26:59Z raasch
[2512]	33	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	34	! no output of ghost layer data
	35	!
	36	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	37	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	38	! includes two more prognostic equations for cloud drop concentration (nc)
	39	! and cloud water content (qc).
	40	!
	41	! 2233 2017-05-30 18:08:54Z suehring
[1552]	42	!
[2233]	43	! 2232 2017-05-30 17:47:52Z suehring
	44	! Adjustments to new topography concept
	45	!
[2210]	46	! 2209 2017-04-19 09:34:46Z kanani
	47	! Added plant canopy model output
	48	!
[2032]	49	! 2031 2016-10-21 15:11:58Z knoop
	50	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	51	!
[2012]	52	! 2011 2016-09-19 17:29:57Z kanani
	53	! Flag urban_surface is now defined in module control_parameters,
	54	! changed prefix for urban surface model output to "usm_",
	55	! introduced control parameter varnamelength for LEN of trimvar.
	56	!
[2008]	57	! 2007 2016-08-24 15:47:17Z kanani
	58	! Added support for new urban surface model (temporary modifications of
	59	! SELECT CASE ( ) necessary, see variable trimvar)
	60	!
[2001]	61	! 2000 2016-08-20 18:09:15Z knoop
	62	! Forced header and separation lines into 80 columns
	63	!
[1981]	64	! 1980 2016-07-29 15:51:57Z suehring
	65	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	66	! to .F.
	67	!
[1977]	68	! 1976 2016-07-27 13:28:04Z maronga
	69	! Output of radiation quantities is now done directly in the respective module
	70	!
[1973]	71	! 1972 2016-07-26 07:52:02Z maronga
	72	! Output of land surface quantities is now done directly in the respective module.
	73	! Unnecessary directive __parallel removed.
	74	!
[1961]	75	! 1960 2016-07-12 16:34:24Z suehring
	76	! Scalar surface flux added
	77	!
[1851]	78	! 1849 2016-04-08 11:33:18Z hoffmann
	79	! prr moved to arrays_3d
	80	!
[1823]	81	! 1822 2016-04-07 07:49:42Z hoffmann
	82	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	83	!
[1809]	84	! 1808 2016-04-05 19:44:00Z raasch
	85	! test output removed
	86	!
[1784]	87	! 1783 2016-03-06 18:36:17Z raasch
	88	! name change of netcdf routines and module + related changes
	89	!
[1746]	90	! 1745 2016-02-05 13:06:51Z gronemeier
	91	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	92	!
[1692]	93	! 1691 2015-10-26 16:17:44Z maronga
	94	! Added output of radiative heating rates for RRTMG
	95	!
[1683]	96	! 1682 2015-10-07 23:56:08Z knoop
	97	! Code annotations made doxygen readable
	98	!
[1586]	99	! 1585 2015-04-30 07:05:52Z maronga
	100	! Added support for RRTMG
	101	!
[1552]	102	! 1551 2015-03-03 14:18:16Z maronga
[1551]	103	! Added suppport for land surface model and radiation model output. In the course
	104	! of this action, the limits for vertical loops have been changed (from nzb and
	105	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	106	! Moreover, a new vertical grid zs was introduced.
[1329]	107	!
[1360]	108	! 1359 2014-04-11 17:15:14Z hoffmann
	109	! New particle structure integrated.
	110	!
[1354]	111	! 1353 2014-04-08 15:21:23Z heinze
	112	! REAL constants provided with KIND-attribute
	113	!
[1329]	114	! 1327 2014-03-21 11:00:16Z raasch
	115	! parts concerning avs output removed,
	116	! -netcdf output queries
	117	!
[1321]	118	! 1320 2014-03-20 08:40:49Z raasch
[1320]	119	! ONLY-attribute added to USE-statements,
	120	! kind-parameters added to all INTEGER and REAL declaration statements,
	121	! kinds are defined in new module kinds,
	122	! old module precision_kind is removed,
	123	! revision history before 2012 removed,
	124	! comment fields (!:) to be used for variable explanations added to
	125	! all variable declaration statements
[674]	126	!
[1319]	127	! 1318 2014-03-17 13:35:16Z raasch
	128	! barrier argument removed from cpu_log,
	129	! module interfaces removed
	130	!
[1309]	131	! 1308 2014-03-13 14:58:42Z fricke
	132	! Check, if the limit of the time dimension is exceeded for parallel output
	133	! To increase the performance for parallel output, the following is done:
	134	! - Update of time axis is only done by PE0
	135	!
[1245]	136	! 1244 2013-10-31 08:16:56Z raasch
	137	! Bugfix for index bounds in case of 3d-parallel output
	138	!
[1116]	139	! 1115 2013-03-26 18:16:16Z hoffmann
	140	! ql is calculated by calc_liquid_water_content
	141	!
[1107]	142	! 1106 2013-03-04 05:31:38Z raasch
	143	! array_kind renamed precision_kind
	144	!
[1077]	145	! 1076 2012-12-05 08:30:18Z hoffmann
	146	! Bugfix in output of ql
	147	!
[1054]	148	! 1053 2012-11-13 17:11:03Z hoffmann
	149	! +nr, qr, prr, qc and averaged quantities
	150	!
[1037]	151	! 1036 2012-10-22 13:43:42Z raasch
	152	! code put under GPL (PALM 3.9)
	153	!
[1035]	154	! 1031 2012-10-19 14:35:30Z raasch
	155	! netCDF4 without parallel file support implemented
	156	!
[1008]	157	! 1007 2012-09-19 14:30:36Z franke
	158	! Bugfix: missing calculation of ql_vp added
	159	!
[1]	160	! Revision 1.1 1997/09/03 06:29:36 raasch
	161	! Initial revision
	162	!
	163	!
	164	! Description:
	165	! ------------
[1682]	166	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	167	!------------------------------------------------------------------------------!
[1682]	168	SUBROUTINE data_output_3d( av )
	169
[1]	170
[1320]	171	USE arrays_3d, &
[2292]	172	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	173	sa, tend, u, v, vpt, w
[1320]	174
[1]	175	USE averaging
[1320]	176
[2696]	177	#if defined( __chem )
	178	USE chemistry_model_mod, &
	179	ONLY: chem_data_output_3d
	180	#endif
	181
[1320]	182	USE cloud_parameters, &
[1849]	183	ONLY: l_d_cp, pt_d_t
[1320]	184
	185	USE control_parameters, &
[2696]	186	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	187	io_blocks, io_group, land_surface, message_string, &
	188	ntdim_3d, nz_do3d, &
[2232]	189	psolver, simulated_time, time_since_reference_point, &
	190	urban_surface, varnamelength
[1320]	191
	192	USE cpulog, &
	193	ONLY: log_point, cpu_log
	194
	195	USE indices, &
[2696]	196	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb, wall_flags_0
[1320]	197
	198	USE kinds
	199
[1551]	200	USE land_surface_model_mod, &
[2232]	201	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	202
[1783]	203	#if defined( __netcdf )
	204	USE NETCDF
	205	#endif
	206
	207	USE netcdf_interface, &
[2696]	208	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	209	netcdf_data_format, netcdf_handle_error
[1320]	210
	211	USE particle_attributes, &
[1359]	212	ONLY: grid_particles, number_of_particles, particles, &
	213	particle_advection_start, prt_count
[1320]	214
[1]	215	USE pegrid
	216
[2209]	217	USE plant_canopy_model_mod, &
	218	ONLY: pcm_data_output_3d, plant_canopy
	219
[1585]	220	USE radiation_model_mod, &
[2696]	221	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	222
[2696]	223	USE turbulence_closure_mod, &
	224	ONLY: tcm_data_output_3d
	225
[2007]	226	USE urban_surface_mod, &
[2696]	227	ONLY: usm_data_output_3d
[1585]	228
[2007]	229
[1]	230	IMPLICIT NONE
	231
[1682]	232	INTEGER(iwp) :: av !<
[2696]	233	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	234	INTEGER(iwp) :: i !<
	235	INTEGER(iwp) :: if !<
	236	INTEGER(iwp) :: j !<
	237	INTEGER(iwp) :: k !<
	238	INTEGER(iwp) :: n !<
	239	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	240	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	241
[1682]	242	LOGICAL :: found !<
	243	LOGICAL :: resorted !<
[1]	244
[1682]	245	REAL(wp) :: mean_r !<
	246	REAL(wp) :: s_r2 !<
	247	REAL(wp) :: s_r3 !<
[1]	248
[1682]	249	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	250
[1682]	251	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	252
[2011]	253	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	254
[1]	255	!
	256	!-- Return, if nothing to output
	257	IF ( do3d_no(av) == 0 ) RETURN
	258
	259	CALL cpu_log (log_point(14),'data_output_3d','start')
	260
	261	!
	262	!-- Open output file.
[2512]	263	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	264	!-- own file and writes the data of its subdomain in binary format. After the
	265	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	266	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	267	IF ( netcdf_data_format < 5 ) THEN
	268	CALL check_open( 30 )
	269	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	270	ELSE
[1327]	271	CALL check_open( 106+av*10 )
[493]	272	ENDIF
[1]	273
	274	!
[1745]	275	!-- For parallel netcdf output the time axis must be limited. Return, if this
	276	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	277	!-- the given end time by the length of the given output interval.
	278	IF ( netcdf_data_format > 4 ) THEN
	279	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	280	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	281	simulated_time, '&because the maximum ', &
	282	'number of output time levels is ', &
	283	'exceeded.'
	284	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	285	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	286	RETURN
	287	ENDIF
	288	ENDIF
	289
	290	!
[1031]	291	!-- Update the netCDF time axis
[1308]	292	!-- In case of parallel output, this is only done by PE0 to increase the
	293	!-- performance.
[1]	294	#if defined( __netcdf )
[1308]	295	do3d_time_count(av) = do3d_time_count(av) + 1
	296	IF ( myid == 0 ) THEN
[1327]	297	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	298	(/ time_since_reference_point /), &
	299	start = (/ do3d_time_count(av) /), &
	300	count = (/ 1 /) )
[1783]	301	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	302	ENDIF
	303	#endif
	304
	305	!
	306	!-- Loop over all variables to be written.
	307	if = 1
	308
	309	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	310
[1]	311	!
[2007]	312	!-- Temporary solution to account for data output within the new urban
	313	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	314	!-- Store the array chosen on the temporary array.
[2007]	315	trimvar = TRIM( do3d(av,if) )
[2011]	316	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	317	trimvar = 'usm_output'
	318	resorted = .TRUE.
	319	nzb_do = nzub
	320	nzt_do = nzut
	321	ELSE
	322	resorted = .FALSE.
	323	nzb_do = nzb
	324	nzt_do = nz_do3d
	325	ENDIF
[1551]	326	!
[1980]	327	!-- Set flag to steer output of radiation, land-surface, or user-defined
	328	!-- quantities
	329	found = .FALSE.
	330	!
[1551]	331	!-- Allocate a temporary array with the desired output dimensions.
[2512]	332	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	333	!
	334	!-- Before each output, set array local_pf to fill value
	335	local_pf = fill_value
	336	!
	337	!-- Set masking flag for topography for not resorted arrays
	338	flag_nr = 0
[1551]	339
[2007]	340	SELECT CASE ( trimvar )
[1]	341
	342	CASE ( 'e' )
	343	IF ( av == 0 ) THEN
	344	to_be_resorted => e
	345	ELSE
	346	to_be_resorted => e_av
	347	ENDIF
	348
[771]	349	CASE ( 'lpt' )
	350	IF ( av == 0 ) THEN
	351	to_be_resorted => pt
	352	ELSE
	353	to_be_resorted => lpt_av
	354	ENDIF
	355
[2292]	356	CASE ( 'nc' )
	357	IF ( av == 0 ) THEN
	358	to_be_resorted => nc
	359	ELSE
	360	to_be_resorted => nc_av
	361	ENDIF
	362
[1053]	363	CASE ( 'nr' )
	364	IF ( av == 0 ) THEN
	365	to_be_resorted => nr
	366	ELSE
	367	to_be_resorted => nr_av
	368	ENDIF
	369
[1]	370	CASE ( 'p' )
	371	IF ( av == 0 ) THEN
[727]	372	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	373	to_be_resorted => p
	374	ELSE
[727]	375	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	376	to_be_resorted => p_av
	377	ENDIF
	378
	379	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	380	IF ( av == 0 ) THEN
[1359]	381	IF ( simulated_time >= particle_advection_start ) THEN
	382	tend = prt_count
	383	ELSE
	384	tend = 0.0_wp
	385	ENDIF
[2512]	386	DO i = nxl, nxr
	387	DO j = nys, nyn
[1551]	388	DO k = nzb_do, nzt_do
[1]	389	local_pf(i,j,k) = tend(k,j,i)
	390	ENDDO
	391	ENDDO
	392	ENDDO
	393	resorted = .TRUE.
	394	ELSE
	395	to_be_resorted => pc_av
	396	ENDIF
	397
[1359]	398	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	399	IF ( av == 0 ) THEN
[1359]	400	IF ( simulated_time >= particle_advection_start ) THEN
	401	DO i = nxl, nxr
	402	DO j = nys, nyn
[1551]	403	DO k = nzb_do, nzt_do
[1359]	404	number_of_particles = prt_count(k,j,i)
	405	IF (number_of_particles <= 0) CYCLE
	406	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	407	s_r2 = 0.0_wp
	408	s_r3 = 0.0_wp
	409	DO n = 1, number_of_particles
	410	IF ( particles(n)%particle_mask ) THEN
	411	s_r2 = s_r2 + particles(n)%radius*2 &
	412	particles(n)%weight_factor
	413	s_r3 = s_r3 + particles(n)%radius*3 &
	414	particles(n)%weight_factor
	415	ENDIF
	416	ENDDO
	417	IF ( s_r2 > 0.0_wp ) THEN
	418	mean_r = s_r3 / s_r2
	419	ELSE
	420	mean_r = 0.0_wp
	421	ENDIF
	422	tend(k,j,i) = mean_r
[1]	423	ENDDO
	424	ENDDO
	425	ENDDO
[1359]	426	ELSE
	427	tend = 0.0_wp
	428	ENDIF
[2512]	429	DO i = nxl, nxr
	430	DO j = nys, nyn
[1551]	431	DO k = nzb_do, nzt_do
[1]	432	local_pf(i,j,k) = tend(k,j,i)
	433	ENDDO
	434	ENDDO
	435	ENDDO
	436	resorted = .TRUE.
	437	ELSE
	438	to_be_resorted => pr_av
	439	ENDIF
	440
[1053]	441	CASE ( 'prr' )
	442	IF ( av == 0 ) THEN
[2512]	443	DO i = nxl, nxr
	444	DO j = nys, nyn
[1822]	445	DO k = nzb_do, nzt_do
[1053]	446	local_pf(i,j,k) = prr(k,j,i)
	447	ENDDO
	448	ENDDO
	449	ENDDO
	450	ELSE
[2512]	451	DO i = nxl, nxr
	452	DO j = nys, nyn
[1822]	453	DO k = nzb_do, nzt_do
[1053]	454	local_pf(i,j,k) = prr_av(k,j,i)
	455	ENDDO
	456	ENDDO
	457	ENDDO
	458	ENDIF
	459	resorted = .TRUE.
	460
[1]	461	CASE ( 'pt' )
	462	IF ( av == 0 ) THEN
	463	IF ( .NOT. cloud_physics ) THEN
	464	to_be_resorted => pt
	465	ELSE
[2512]	466	DO i = nxl, nxr
	467	DO j = nys, nyn
[1551]	468	DO k = nzb_do, nzt_do
[1320]	469	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	470	pt_d_t(k) * &
[1]	471	ql(k,j,i)
	472	ENDDO
	473	ENDDO
	474	ENDDO
	475	resorted = .TRUE.
	476	ENDIF
	477	ELSE
	478	to_be_resorted => pt_av
	479	ENDIF
	480
	481	CASE ( 'q' )
	482	IF ( av == 0 ) THEN
	483	to_be_resorted => q
	484	ELSE
	485	to_be_resorted => q_av
	486	ENDIF
[691]	487
[1053]	488	CASE ( 'qc' )
[1]	489	IF ( av == 0 ) THEN
[1115]	490	to_be_resorted => qc
[1]	491	ELSE
[1115]	492	to_be_resorted => qc_av
[1]	493	ENDIF
	494
[1053]	495	CASE ( 'ql' )
	496	IF ( av == 0 ) THEN
[1115]	497	to_be_resorted => ql
[1053]	498	ELSE
[1115]	499	to_be_resorted => ql_av
[1053]	500	ENDIF
	501
[1]	502	CASE ( 'ql_c' )
	503	IF ( av == 0 ) THEN
	504	to_be_resorted => ql_c
	505	ELSE
	506	to_be_resorted => ql_c_av
	507	ENDIF
	508
	509	CASE ( 'ql_v' )
	510	IF ( av == 0 ) THEN
	511	to_be_resorted => ql_v
	512	ELSE
	513	to_be_resorted => ql_v_av
	514	ENDIF
	515
	516	CASE ( 'ql_vp' )
	517	IF ( av == 0 ) THEN
[1359]	518	IF ( simulated_time >= particle_advection_start ) THEN
	519	DO i = nxl, nxr
	520	DO j = nys, nyn
[1551]	521	DO k = nzb_do, nzt_do
[1359]	522	number_of_particles = prt_count(k,j,i)
	523	IF (number_of_particles <= 0) CYCLE
	524	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	525	DO n = 1, number_of_particles
	526	IF ( particles(n)%particle_mask ) THEN
	527	tend(k,j,i) = tend(k,j,i) + &
	528	particles(n)%weight_factor / &
	529	prt_count(k,j,i)
	530	ENDIF
	531	ENDDO
[1007]	532	ENDDO
	533	ENDDO
	534	ENDDO
[1359]	535	ELSE
	536	tend = 0.0_wp
	537	ENDIF
[2512]	538	DO i = nxl, nxr
	539	DO j = nys, nyn
[1551]	540	DO k = nzb_do, nzt_do
[1007]	541	local_pf(i,j,k) = tend(k,j,i)
	542	ENDDO
	543	ENDDO
	544	ENDDO
	545	resorted = .TRUE.
[1]	546	ELSE
	547	to_be_resorted => ql_vp_av
	548	ENDIF
	549
[1053]	550	CASE ( 'qr' )
	551	IF ( av == 0 ) THEN
	552	to_be_resorted => qr
	553	ELSE
	554	to_be_resorted => qr_av
	555	ENDIF
	556
[1]	557	CASE ( 'qv' )
	558	IF ( av == 0 ) THEN
[2512]	559	DO i = nxl, nxr
	560	DO j = nys, nyn
[1551]	561	DO k = nzb_do, nzt_do
[1]	562	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	563	ENDDO
	564	ENDDO
	565	ENDDO
	566	resorted = .TRUE.
	567	ELSE
	568	to_be_resorted => qv_av
	569	ENDIF
	570
[2031]	571	CASE ( 'rho_ocean' )
[96]	572	IF ( av == 0 ) THEN
[2031]	573	to_be_resorted => rho_ocean
[96]	574	ELSE
[2031]	575	to_be_resorted => rho_ocean_av
[96]	576	ENDIF
[691]	577
[1]	578	CASE ( 's' )
	579	IF ( av == 0 ) THEN
[1960]	580	to_be_resorted => s
[1]	581	ELSE
[355]	582	to_be_resorted => s_av
[1]	583	ENDIF
[691]	584
[96]	585	CASE ( 'sa' )
	586	IF ( av == 0 ) THEN
	587	to_be_resorted => sa
	588	ELSE
	589	to_be_resorted => sa_av
	590	ENDIF
[691]	591
[1]	592	CASE ( 'u' )
[2696]	593	flag_nr = 1
[1]	594	IF ( av == 0 ) THEN
	595	to_be_resorted => u
	596	ELSE
	597	to_be_resorted => u_av
	598	ENDIF
	599
	600	CASE ( 'v' )
[2696]	601	flag_nr = 2
[1]	602	IF ( av == 0 ) THEN
	603	to_be_resorted => v
	604	ELSE
	605	to_be_resorted => v_av
	606	ENDIF
	607
	608	CASE ( 'vpt' )
	609	IF ( av == 0 ) THEN
	610	to_be_resorted => vpt
	611	ELSE
	612	to_be_resorted => vpt_av
	613	ENDIF
	614
	615	CASE ( 'w' )
[2696]	616	flag_nr = 3
[1]	617	IF ( av == 0 ) THEN
	618	to_be_resorted => w
	619	ELSE
	620	to_be_resorted => w_av
	621	ENDIF
[2007]	622	!
	623	!-- Block of urban surface model outputs
	624	CASE ( 'usm_output' )
	625	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	626	nzb_do, nzt_do )
[1]	627
	628	CASE DEFAULT
[1972]	629
[1]	630	!
[1972]	631	!-- Land surface quantity
	632	IF ( land_surface ) THEN
	633	!
	634	!-- For soil model quantities, it is required to re-allocate local_pf
	635	nzb_do = nzb_soil
	636	nzt_do = nzt_soil
	637
	638	DEALLOCATE ( local_pf )
[2512]	639	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	640	local_pf = fill_value
[1972]	641
	642	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	643	resorted = .TRUE.
[1976]	644
	645	!
	646	!-- If no soil model variable was found, re-allocate local_pf
	647	IF ( .NOT. found ) THEN
	648	nzb_do = nzb
	649	nzt_do = nz_do3d
	650
	651	DEALLOCATE ( local_pf )
[2512]	652	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	653	ENDIF
	654
[1972]	655	ENDIF
	656
[2696]	657	IF ( .NOT. found ) THEN
	658	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
	659	resorted = .TRUE.
	660	ENDIF
	661
[1972]	662	!
[1976]	663	!-- Radiation quantity
	664	IF ( .NOT. found .AND. radiation ) THEN
	665	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	666	local_pf )
	667	resorted = .TRUE.
	668	ENDIF
	669
	670	!
[2696]	671	!-- Chemistry model output
	672	#if defined( __chem )
	673	IF ( .NOT. found .AND. air_chemistry ) THEN
	674	CALL chem_data_output_3d( av, do3d(av,if), found, &
	675	local_pf )
	676	resorted = .TRUE.
	677	ENDIF
	678	#endif
	679
	680	!
[2209]	681	!-- Plant canopy model output
	682	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	683	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	684	fill_value )
[2209]	685	resorted = .TRUE.
	686	ENDIF
	687
	688	!
[1]	689	!-- User defined quantity
[1972]	690	IF ( .NOT. found ) THEN
	691	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	692	nzb_do, nzt_do )
	693	resorted = .TRUE.
	694	ENDIF
[1]	695
[254]	696	IF ( .NOT. found ) THEN
[1320]	697	message_string = 'no output available for: ' // &
[274]	698	TRIM( do3d(av,if) )
[254]	699	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	700	ENDIF
	701
	702	END SELECT
	703
	704	!
	705	!-- Resort the array to be output, if not done above
	706	IF ( .NOT. resorted ) THEN
[2512]	707	DO i = nxl, nxr
	708	DO j = nys, nyn
[1551]	709	DO k = nzb_do, nzt_do
[2696]	710	local_pf(i,j,k) = MERGE( &
	711	to_be_resorted(k,j,i), &
	712	REAL( fill_value, KIND = wp ), &
	713	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	714	ENDDO
	715	ENDDO
	716	ENDDO
	717	ENDIF
	718
	719	!
[1327]	720	!-- Output of the 3D-array
	721	#if defined( __parallel )
	722	IF ( netcdf_data_format < 5 ) THEN
[1]	723	!
[1327]	724	!-- Non-parallel netCDF output. Data is output in parallel in
	725	!-- FORTRAN binary format here, and later collected into one file by
	726	!-- combine_plot_fields
	727	IF ( myid == 0 ) THEN
	728	WRITE ( 30 ) time_since_reference_point, &
	729	do3d_time_count(av), av
[1]	730	ENDIF
[1327]	731	DO i = 0, io_blocks-1
	732	IF ( i == io_group ) THEN
[2512]	733	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	734	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	735	ENDIF
[1972]	736
[1327]	737	CALL MPI_BARRIER( comm2d, ierr )
[1972]	738
[1327]	739	ENDDO
[559]	740
[1327]	741	ELSE
[646]	742	#if defined( __netcdf )
[493]	743	!
[1327]	744	!-- Parallel output in netCDF4/HDF5 format.
[2512]	745	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	746	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	747	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	748	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	749	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	750	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	751	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	752	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	753	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	754	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	755	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	756	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	757	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	758	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	759	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	760	! ELSE
[1327]	761	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	762	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	763	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	764	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	765	! ENDIF
[1783]	766	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	767	#endif
[1327]	768	ENDIF
[1]	769	#else
	770	#if defined( __netcdf )
[1327]	771	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	772	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	773	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	774	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	775	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	776	#endif
	777	#endif
	778
	779	if = if + 1
	780
	781	!
[1551]	782	!-- Deallocate temporary array
	783	DEALLOCATE ( local_pf )
[1]	784
[1551]	785	ENDDO
[1]	786
[1318]	787	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	788
	789	!
	790	!-- Formats.
[1320]	791	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	792	'label = ',A,A)
	793
	794	END SUBROUTINE data_output_3d

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