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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2255

Last change on this file since 2255 was 2233, checked in by suehring, 8 years ago
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[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[1036]	3	! This file is part of PALM.
	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2101]	17	! Copyright 1997-2017 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 2233 2017-05-30 18:08:54Z knoop $
	27	!
[2233]	28	! 2232 2017-05-30 17:47:52Z suehring
	29	! Adjustments to new topography concept
	30	!
[2210]	31	! 2209 2017-04-19 09:34:46Z kanani
	32	! Added plant canopy model output
	33	!
[2032]	34	! 2031 2016-10-21 15:11:58Z knoop
	35	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	36	!
[2012]	37	! 2011 2016-09-19 17:29:57Z kanani
	38	! Flag urban_surface is now defined in module control_parameters,
	39	! changed prefix for urban surface model output to "usm_",
	40	! introduced control parameter varnamelength for LEN of trimvar.
	41	!
[2008]	42	! 2007 2016-08-24 15:47:17Z kanani
	43	! Added support for new urban surface model (temporary modifications of
	44	! SELECT CASE ( ) necessary, see variable trimvar)
	45	!
[2001]	46	! 2000 2016-08-20 18:09:15Z knoop
	47	! Forced header and separation lines into 80 columns
	48	!
[1981]	49	! 1980 2016-07-29 15:51:57Z suehring
	50	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	51	! to .F.
	52	!
[1977]	53	! 1976 2016-07-27 13:28:04Z maronga
	54	! Output of radiation quantities is now done directly in the respective module
	55	!
[1973]	56	! 1972 2016-07-26 07:52:02Z maronga
	57	! Output of land surface quantities is now done directly in the respective module.
	58	! Unnecessary directive __parallel removed.
	59	!
[1961]	60	! 1960 2016-07-12 16:34:24Z suehring
	61	! Scalar surface flux added
	62	!
[1851]	63	! 1849 2016-04-08 11:33:18Z hoffmann
	64	! prr moved to arrays_3d
	65	!
[1823]	66	! 1822 2016-04-07 07:49:42Z hoffmann
	67	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	68	!
[1809]	69	! 1808 2016-04-05 19:44:00Z raasch
	70	! test output removed
	71	!
[1784]	72	! 1783 2016-03-06 18:36:17Z raasch
	73	! name change of netcdf routines and module + related changes
	74	!
[1746]	75	! 1745 2016-02-05 13:06:51Z gronemeier
	76	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	77	!
[1692]	78	! 1691 2015-10-26 16:17:44Z maronga
	79	! Added output of radiative heating rates for RRTMG
	80	!
[1683]	81	! 1682 2015-10-07 23:56:08Z knoop
	82	! Code annotations made doxygen readable
	83	!
[1586]	84	! 1585 2015-04-30 07:05:52Z maronga
	85	! Added support for RRTMG
	86	!
[1552]	87	! 1551 2015-03-03 14:18:16Z maronga
[1551]	88	! Added suppport for land surface model and radiation model output. In the course
	89	! of this action, the limits for vertical loops have been changed (from nzb and
	90	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	91	! Moreover, a new vertical grid zs was introduced.
[1329]	92	!
[1360]	93	! 1359 2014-04-11 17:15:14Z hoffmann
	94	! New particle structure integrated.
	95	!
[1354]	96	! 1353 2014-04-08 15:21:23Z heinze
	97	! REAL constants provided with KIND-attribute
	98	!
[1329]	99	! 1327 2014-03-21 11:00:16Z raasch
	100	! parts concerning avs output removed,
	101	! -netcdf output queries
	102	!
[1321]	103	! 1320 2014-03-20 08:40:49Z raasch
[1320]	104	! ONLY-attribute added to USE-statements,
	105	! kind-parameters added to all INTEGER and REAL declaration statements,
	106	! kinds are defined in new module kinds,
	107	! old module precision_kind is removed,
	108	! revision history before 2012 removed,
	109	! comment fields (!:) to be used for variable explanations added to
	110	! all variable declaration statements
[674]	111	!
[1319]	112	! 1318 2014-03-17 13:35:16Z raasch
	113	! barrier argument removed from cpu_log,
	114	! module interfaces removed
	115	!
[1309]	116	! 1308 2014-03-13 14:58:42Z fricke
	117	! Check, if the limit of the time dimension is exceeded for parallel output
	118	! To increase the performance for parallel output, the following is done:
	119	! - Update of time axis is only done by PE0
	120	!
[1245]	121	! 1244 2013-10-31 08:16:56Z raasch
	122	! Bugfix for index bounds in case of 3d-parallel output
	123	!
[1116]	124	! 1115 2013-03-26 18:16:16Z hoffmann
	125	! ql is calculated by calc_liquid_water_content
	126	!
[1107]	127	! 1106 2013-03-04 05:31:38Z raasch
	128	! array_kind renamed precision_kind
	129	!
[1077]	130	! 1076 2012-12-05 08:30:18Z hoffmann
	131	! Bugfix in output of ql
	132	!
[1054]	133	! 1053 2012-11-13 17:11:03Z hoffmann
	134	! +nr, qr, prr, qc and averaged quantities
	135	!
[1037]	136	! 1036 2012-10-22 13:43:42Z raasch
	137	! code put under GPL (PALM 3.9)
	138	!
[1035]	139	! 1031 2012-10-19 14:35:30Z raasch
	140	! netCDF4 without parallel file support implemented
	141	!
[1008]	142	! 1007 2012-09-19 14:30:36Z franke
	143	! Bugfix: missing calculation of ql_vp added
	144	!
[1]	145	! Revision 1.1 1997/09/03 06:29:36 raasch
	146	! Initial revision
	147	!
	148	!
	149	! Description:
	150	! ------------
[1682]	151	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	152	!------------------------------------------------------------------------------!
[1682]	153	SUBROUTINE data_output_3d( av )
	154
[1]	155
[1320]	156	USE arrays_3d, &
[2232]	157	ONLY: e, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, sa, &
	158	tend, u, v, vpt, w
[1320]	159
[1]	160	USE averaging
[1320]	161
	162	USE cloud_parameters, &
[1849]	163	ONLY: l_d_cp, pt_d_t
[1320]	164
	165	USE control_parameters, &
[1822]	166	ONLY: cloud_physics, do3d, do3d_no, do3d_time_count, io_blocks, &
[2232]	167	io_group, land_surface, message_string, ntdim_3d, nz_do3d, &
	168	psolver, simulated_time, time_since_reference_point, &
	169	urban_surface, varnamelength
[1320]	170
	171	USE cpulog, &
	172	ONLY: log_point, cpu_log
	173
	174	USE indices, &
[1822]	175	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb
[1320]	176
	177	USE kinds
	178
[1551]	179	USE land_surface_model_mod, &
[2232]	180	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	181
[1783]	182	#if defined( __netcdf )
	183	USE NETCDF
	184	#endif
	185
	186	USE netcdf_interface, &
	187	ONLY: id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
	188	netcdf_data_format, netcdf_handle_error
[1320]	189
	190	USE particle_attributes, &
[1359]	191	ONLY: grid_particles, number_of_particles, particles, &
	192	particle_advection_start, prt_count
[1320]	193
[1]	194	USE pegrid
	195
[2209]	196	USE plant_canopy_model_mod, &
	197	ONLY: pcm_data_output_3d, plant_canopy
	198
[1585]	199	USE radiation_model_mod, &
[1976]	200	ONLY: radiation, radiation_data_output_3d
[1585]	201
[2007]	202	USE urban_surface_mod, &
[2011]	203	ONLY: nzub, nzut, usm_data_output_3d
[1585]	204
[2007]	205
[1]	206	IMPLICIT NONE
	207
[1682]	208	INTEGER(iwp) :: av !<
	209	INTEGER(iwp) :: i !<
	210	INTEGER(iwp) :: if !<
	211	INTEGER(iwp) :: j !<
	212	INTEGER(iwp) :: k !<
	213	INTEGER(iwp) :: n !<
	214	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	215	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	216
[1682]	217	LOGICAL :: found !<
	218	LOGICAL :: resorted !<
[1]	219
[1682]	220	REAL(wp) :: mean_r !<
	221	REAL(wp) :: s_r2 !<
	222	REAL(wp) :: s_r3 !<
[1]	223
[1682]	224	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	225
[1682]	226	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	227
[2011]	228	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	229
[1]	230	!
	231	!-- Return, if nothing to output
	232	IF ( do3d_no(av) == 0 ) RETURN
	233
	234	CALL cpu_log (log_point(14),'data_output_3d','start')
	235
	236	!
	237	!-- Open output file.
	238	!-- Also creates coordinate and fld-file for AVS.
[1031]	239	!-- For classic or 64bit netCDF output or output of other (old) data formats,
[493]	240	!-- for a run on more than one PE, each PE opens its own file and
[1]	241	!-- writes the data of its subdomain in binary format (regardless of the format
	242	!-- the user has requested). After the run, these files are combined to one
	243	!-- file by combine_plot_fields in the format requested by the user (netcdf
[493]	244	!-- and/or avs).
[1031]	245	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	246	IF ( netcdf_data_format < 5 ) THEN
	247	CALL check_open( 30 )
	248	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	249	ELSE
[1327]	250	CALL check_open( 106+av*10 )
[493]	251	ENDIF
[1]	252
	253	!
[1745]	254	!-- For parallel netcdf output the time axis must be limited. Return, if this
	255	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	256	!-- the given end time by the length of the given output interval.
	257	IF ( netcdf_data_format > 4 ) THEN
	258	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	259	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	260	simulated_time, '&because the maximum ', &
	261	'number of output time levels is ', &
	262	'exceeded.'
	263	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	264	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	265	RETURN
	266	ENDIF
	267	ENDIF
	268
	269	!
[1031]	270	!-- Update the netCDF time axis
[1308]	271	!-- In case of parallel output, this is only done by PE0 to increase the
	272	!-- performance.
[1]	273	#if defined( __netcdf )
[1308]	274	do3d_time_count(av) = do3d_time_count(av) + 1
	275	IF ( myid == 0 ) THEN
[1327]	276	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	277	(/ time_since_reference_point /), &
	278	start = (/ do3d_time_count(av) /), &
	279	count = (/ 1 /) )
[1783]	280	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	281	ENDIF
	282	#endif
	283
	284	!
	285	!-- Loop over all variables to be written.
	286	if = 1
	287
	288	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	289
[1]	290	!
[2007]	291	!-- Temporary solution to account for data output within the new urban
	292	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	293	!-- Store the array chosen on the temporary array.
[2007]	294	trimvar = TRIM( do3d(av,if) )
[2011]	295	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	296	trimvar = 'usm_output'
	297	resorted = .TRUE.
	298	nzb_do = nzub
	299	nzt_do = nzut
	300	ELSE
	301	resorted = .FALSE.
	302	nzb_do = nzb
	303	nzt_do = nz_do3d
	304	ENDIF
[1551]	305	!
[1980]	306	!-- Set flag to steer output of radiation, land-surface, or user-defined
	307	!-- quantities
	308	found = .FALSE.
	309	!
[1551]	310	!-- Allocate a temporary array with the desired output dimensions.
	311	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) )
	312
[2007]	313	SELECT CASE ( trimvar )
[1]	314
	315	CASE ( 'e' )
	316	IF ( av == 0 ) THEN
	317	to_be_resorted => e
	318	ELSE
	319	to_be_resorted => e_av
	320	ENDIF
	321
[771]	322	CASE ( 'lpt' )
	323	IF ( av == 0 ) THEN
	324	to_be_resorted => pt
	325	ELSE
	326	to_be_resorted => lpt_av
	327	ENDIF
	328
[1053]	329	CASE ( 'nr' )
	330	IF ( av == 0 ) THEN
	331	to_be_resorted => nr
	332	ELSE
	333	to_be_resorted => nr_av
	334	ENDIF
	335
[1]	336	CASE ( 'p' )
	337	IF ( av == 0 ) THEN
[727]	338	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	339	to_be_resorted => p
	340	ELSE
[727]	341	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	342	to_be_resorted => p_av
	343	ENDIF
	344
	345	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	346	IF ( av == 0 ) THEN
[1359]	347	IF ( simulated_time >= particle_advection_start ) THEN
	348	tend = prt_count
	349	CALL exchange_horiz( tend, nbgp )
	350	ELSE
	351	tend = 0.0_wp
	352	ENDIF
[667]	353	DO i = nxlg, nxrg
	354	DO j = nysg, nyng
[1551]	355	DO k = nzb_do, nzt_do
[1]	356	local_pf(i,j,k) = tend(k,j,i)
	357	ENDDO
	358	ENDDO
	359	ENDDO
	360	resorted = .TRUE.
	361	ELSE
[667]	362	CALL exchange_horiz( pc_av, nbgp )
[1]	363	to_be_resorted => pc_av
	364	ENDIF
	365
[1359]	366	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	367	IF ( av == 0 ) THEN
[1359]	368	IF ( simulated_time >= particle_advection_start ) THEN
	369	DO i = nxl, nxr
	370	DO j = nys, nyn
[1551]	371	DO k = nzb_do, nzt_do
[1359]	372	number_of_particles = prt_count(k,j,i)
	373	IF (number_of_particles <= 0) CYCLE
	374	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	375	s_r2 = 0.0_wp
	376	s_r3 = 0.0_wp
	377	DO n = 1, number_of_particles
	378	IF ( particles(n)%particle_mask ) THEN
	379	s_r2 = s_r2 + particles(n)%radius*2 &
	380	particles(n)%weight_factor
	381	s_r3 = s_r3 + particles(n)%radius*3 &
	382	particles(n)%weight_factor
	383	ENDIF
	384	ENDDO
	385	IF ( s_r2 > 0.0_wp ) THEN
	386	mean_r = s_r3 / s_r2
	387	ELSE
	388	mean_r = 0.0_wp
	389	ENDIF
	390	tend(k,j,i) = mean_r
[1]	391	ENDDO
	392	ENDDO
	393	ENDDO
[1359]	394	CALL exchange_horiz( tend, nbgp )
	395	ELSE
	396	tend = 0.0_wp
	397	ENDIF
[667]	398	DO i = nxlg, nxrg
	399	DO j = nysg, nyng
[1551]	400	DO k = nzb_do, nzt_do
[1]	401	local_pf(i,j,k) = tend(k,j,i)
	402	ENDDO
	403	ENDDO
	404	ENDDO
	405	resorted = .TRUE.
	406	ELSE
[667]	407	CALL exchange_horiz( pr_av, nbgp )
[1]	408	to_be_resorted => pr_av
	409	ENDIF
	410
[1053]	411	CASE ( 'prr' )
	412	IF ( av == 0 ) THEN
	413	CALL exchange_horiz( prr, nbgp )
	414	DO i = nxlg, nxrg
	415	DO j = nysg, nyng
[1822]	416	DO k = nzb_do, nzt_do
[1053]	417	local_pf(i,j,k) = prr(k,j,i)
	418	ENDDO
	419	ENDDO
	420	ENDDO
	421	ELSE
	422	CALL exchange_horiz( prr_av, nbgp )
	423	DO i = nxlg, nxrg
	424	DO j = nysg, nyng
[1822]	425	DO k = nzb_do, nzt_do
[1053]	426	local_pf(i,j,k) = prr_av(k,j,i)
	427	ENDDO
	428	ENDDO
	429	ENDDO
	430	ENDIF
	431	resorted = .TRUE.
	432
[1]	433	CASE ( 'pt' )
	434	IF ( av == 0 ) THEN
	435	IF ( .NOT. cloud_physics ) THEN
	436	to_be_resorted => pt
	437	ELSE
[667]	438	DO i = nxlg, nxrg
	439	DO j = nysg, nyng
[1551]	440	DO k = nzb_do, nzt_do
[1320]	441	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	442	pt_d_t(k) * &
[1]	443	ql(k,j,i)
	444	ENDDO
	445	ENDDO
	446	ENDDO
	447	resorted = .TRUE.
	448	ENDIF
	449	ELSE
	450	to_be_resorted => pt_av
	451	ENDIF
	452
	453	CASE ( 'q' )
	454	IF ( av == 0 ) THEN
	455	to_be_resorted => q
	456	ELSE
	457	to_be_resorted => q_av
	458	ENDIF
[691]	459
[1053]	460	CASE ( 'qc' )
[1]	461	IF ( av == 0 ) THEN
[1115]	462	to_be_resorted => qc
[1]	463	ELSE
[1115]	464	to_be_resorted => qc_av
[1]	465	ENDIF
	466
[1053]	467	CASE ( 'ql' )
	468	IF ( av == 0 ) THEN
[1115]	469	to_be_resorted => ql
[1053]	470	ELSE
[1115]	471	to_be_resorted => ql_av
[1053]	472	ENDIF
	473
[1]	474	CASE ( 'ql_c' )
	475	IF ( av == 0 ) THEN
	476	to_be_resorted => ql_c
	477	ELSE
	478	to_be_resorted => ql_c_av
	479	ENDIF
	480
	481	CASE ( 'ql_v' )
	482	IF ( av == 0 ) THEN
	483	to_be_resorted => ql_v
	484	ELSE
	485	to_be_resorted => ql_v_av
	486	ENDIF
	487
	488	CASE ( 'ql_vp' )
	489	IF ( av == 0 ) THEN
[1359]	490	IF ( simulated_time >= particle_advection_start ) THEN
	491	DO i = nxl, nxr
	492	DO j = nys, nyn
[1551]	493	DO k = nzb_do, nzt_do
[1359]	494	number_of_particles = prt_count(k,j,i)
	495	IF (number_of_particles <= 0) CYCLE
	496	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	497	DO n = 1, number_of_particles
	498	IF ( particles(n)%particle_mask ) THEN
	499	tend(k,j,i) = tend(k,j,i) + &
	500	particles(n)%weight_factor / &
	501	prt_count(k,j,i)
	502	ENDIF
	503	ENDDO
[1007]	504	ENDDO
	505	ENDDO
	506	ENDDO
[1359]	507	CALL exchange_horiz( tend, nbgp )
	508	ELSE
	509	tend = 0.0_wp
	510	ENDIF
[1007]	511	DO i = nxlg, nxrg
	512	DO j = nysg, nyng
[1551]	513	DO k = nzb_do, nzt_do
[1007]	514	local_pf(i,j,k) = tend(k,j,i)
	515	ENDDO
	516	ENDDO
	517	ENDDO
	518	resorted = .TRUE.
[1]	519	ELSE
[1007]	520	CALL exchange_horiz( ql_vp_av, nbgp )
[1]	521	to_be_resorted => ql_vp_av
	522	ENDIF
	523
[1053]	524	CASE ( 'qr' )
	525	IF ( av == 0 ) THEN
	526	to_be_resorted => qr
	527	ELSE
	528	to_be_resorted => qr_av
	529	ENDIF
	530
[1]	531	CASE ( 'qv' )
	532	IF ( av == 0 ) THEN
[667]	533	DO i = nxlg, nxrg
	534	DO j = nysg, nyng
[1551]	535	DO k = nzb_do, nzt_do
[1]	536	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	537	ENDDO
	538	ENDDO
	539	ENDDO
	540	resorted = .TRUE.
	541	ELSE
	542	to_be_resorted => qv_av
	543	ENDIF
	544
[2031]	545	CASE ( 'rho_ocean' )
[96]	546	IF ( av == 0 ) THEN
[2031]	547	to_be_resorted => rho_ocean
[96]	548	ELSE
[2031]	549	to_be_resorted => rho_ocean_av
[96]	550	ENDIF
[691]	551
[1]	552	CASE ( 's' )
	553	IF ( av == 0 ) THEN
[1960]	554	to_be_resorted => s
[1]	555	ELSE
[355]	556	to_be_resorted => s_av
[1]	557	ENDIF
[691]	558
[96]	559	CASE ( 'sa' )
	560	IF ( av == 0 ) THEN
	561	to_be_resorted => sa
	562	ELSE
	563	to_be_resorted => sa_av
	564	ENDIF
[691]	565
[1]	566	CASE ( 'u' )
	567	IF ( av == 0 ) THEN
	568	to_be_resorted => u
	569	ELSE
	570	to_be_resorted => u_av
	571	ENDIF
	572
	573	CASE ( 'v' )
	574	IF ( av == 0 ) THEN
	575	to_be_resorted => v
	576	ELSE
	577	to_be_resorted => v_av
	578	ENDIF
	579
	580	CASE ( 'vpt' )
	581	IF ( av == 0 ) THEN
	582	to_be_resorted => vpt
	583	ELSE
	584	to_be_resorted => vpt_av
	585	ENDIF
	586
	587	CASE ( 'w' )
	588	IF ( av == 0 ) THEN
	589	to_be_resorted => w
	590	ELSE
	591	to_be_resorted => w_av
	592	ENDIF
[2007]	593	!
	594	!-- Block of urban surface model outputs
	595	CASE ( 'usm_output' )
	596	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	597	nzb_do, nzt_do )
[1]	598
	599	CASE DEFAULT
[1972]	600
[1]	601	!
[1972]	602	!-- Land surface quantity
	603	IF ( land_surface ) THEN
	604	!
	605	!-- For soil model quantities, it is required to re-allocate local_pf
	606	nzb_do = nzb_soil
	607	nzt_do = nzt_soil
	608
	609	DEALLOCATE ( local_pf )
	610	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) )
	611
	612	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	613	resorted = .TRUE.
[1976]	614
	615	!
	616	!-- If no soil model variable was found, re-allocate local_pf
	617	IF ( .NOT. found ) THEN
	618	nzb_do = nzb
	619	nzt_do = nz_do3d
	620
	621	DEALLOCATE ( local_pf )
	622	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) )
	623	ENDIF
	624
[1972]	625	ENDIF
	626
	627	!
[1976]	628	!-- Radiation quantity
	629	IF ( .NOT. found .AND. radiation ) THEN
	630	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	631	local_pf )
	632	resorted = .TRUE.
	633	ENDIF
	634
	635	!
[2209]	636	!-- Plant canopy model output
	637	IF ( .NOT. found .AND. plant_canopy ) THEN
	638	CALL pcm_data_output_3d( av, do3d(av,if), found, &
	639	local_pf )
	640	resorted = .TRUE.
	641	ENDIF
	642
	643	!
[1]	644	!-- User defined quantity
[1972]	645	IF ( .NOT. found ) THEN
	646	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	647	nzb_do, nzt_do )
	648	resorted = .TRUE.
	649	ENDIF
[1]	650
[254]	651	IF ( .NOT. found ) THEN
[1320]	652	message_string = 'no output available for: ' // &
[274]	653	TRIM( do3d(av,if) )
[254]	654	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	655	ENDIF
	656
	657	END SELECT
	658
	659	!
	660	!-- Resort the array to be output, if not done above
	661	IF ( .NOT. resorted ) THEN
[667]	662	DO i = nxlg, nxrg
	663	DO j = nysg, nyng
[1551]	664	DO k = nzb_do, nzt_do
[1]	665	local_pf(i,j,k) = to_be_resorted(k,j,i)
	666	ENDDO
	667	ENDDO
	668	ENDDO
	669	ENDIF
	670
	671	!
[1327]	672	!-- Output of the 3D-array
	673	#if defined( __parallel )
	674	IF ( netcdf_data_format < 5 ) THEN
[1]	675	!
[1327]	676	!-- Non-parallel netCDF output. Data is output in parallel in
	677	!-- FORTRAN binary format here, and later collected into one file by
	678	!-- combine_plot_fields
	679	IF ( myid == 0 ) THEN
	680	WRITE ( 30 ) time_since_reference_point, &
	681	do3d_time_count(av), av
[1]	682	ENDIF
[1327]	683	DO i = 0, io_blocks-1
	684	IF ( i == io_group ) THEN
[1551]	685	WRITE ( 30 ) nxlg, nxrg, nysg, nyng, nzb_do, nzt_do
	686	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	687	ENDIF
[1972]	688
[1327]	689	CALL MPI_BARRIER( comm2d, ierr )
[1972]	690
[1327]	691	ENDDO
[559]	692
[1327]	693	ELSE
[646]	694	#if defined( __netcdf )
[493]	695	!
[1327]	696	!-- Parallel output in netCDF4/HDF5 format.
	697	!-- Do not output redundant ghost point data except for the
	698	!-- boundaries of the total domain.
	699	IF ( nxr == nx .AND. nyn /= ny ) THEN
	700	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	701	local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	702	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	703	count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[1327]	704	ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	705	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	706	local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	707	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	708	count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
[1327]	709	ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	710	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	711	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	712	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	713	count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
[1327]	714	ELSE
	715	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	716	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	717	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	718	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[1327]	719	ENDIF
[1783]	720	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	721	#endif
[1327]	722	ENDIF
[1]	723	#else
	724	#if defined( __netcdf )
[1327]	725	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	726	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	727	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[1551]	728	count = (/ nx+2, ny+2, nzt_do-nzb_do+1, 1 /) )
[1783]	729	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	730	#endif
	731	#endif
	732
	733	if = if + 1
	734
	735	!
[1551]	736	!-- Deallocate temporary array
	737	DEALLOCATE ( local_pf )
[1]	738
[1551]	739	ENDDO
[1]	740
[1318]	741	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	742
	743	!
	744	!-- Formats.
[1320]	745	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	746	'label = ',A,A)
	747
	748	END SUBROUTINE data_output_3d

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