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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2182

Last change on this file since 2182 was 2101, checked in by suehring, 8 years ago
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[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[1036]	3	! This file is part of PALM.
	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2101]	17	! Copyright 1997-2017 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2032]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 2101 2017-01-05 16:42:31Z schwenkel $
	27	!
[2032]	28	! 2031 2016-10-21 15:11:58Z knoop
	29	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	30	!
[2012]	31	! 2011 2016-09-19 17:29:57Z kanani
	32	! Flag urban_surface is now defined in module control_parameters,
	33	! changed prefix for urban surface model output to "usm_",
	34	! introduced control parameter varnamelength for LEN of trimvar.
	35	!
[2008]	36	! 2007 2016-08-24 15:47:17Z kanani
	37	! Added support for new urban surface model (temporary modifications of
	38	! SELECT CASE ( ) necessary, see variable trimvar)
	39	!
[2001]	40	! 2000 2016-08-20 18:09:15Z knoop
	41	! Forced header and separation lines into 80 columns
	42	!
[1981]	43	! 1980 2016-07-29 15:51:57Z suehring
	44	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	45	! to .F.
	46	!
[1977]	47	! 1976 2016-07-27 13:28:04Z maronga
	48	! Output of radiation quantities is now done directly in the respective module
	49	!
[1973]	50	! 1972 2016-07-26 07:52:02Z maronga
	51	! Output of land surface quantities is now done directly in the respective module.
	52	! Unnecessary directive __parallel removed.
	53	!
[1961]	54	! 1960 2016-07-12 16:34:24Z suehring
	55	! Scalar surface flux added
	56	!
[1851]	57	! 1849 2016-04-08 11:33:18Z hoffmann
	58	! prr moved to arrays_3d
	59	!
[1823]	60	! 1822 2016-04-07 07:49:42Z hoffmann
	61	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	62	!
[1809]	63	! 1808 2016-04-05 19:44:00Z raasch
	64	! test output removed
	65	!
[1784]	66	! 1783 2016-03-06 18:36:17Z raasch
	67	! name change of netcdf routines and module + related changes
	68	!
[1746]	69	! 1745 2016-02-05 13:06:51Z gronemeier
	70	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	71	!
[1692]	72	! 1691 2015-10-26 16:17:44Z maronga
	73	! Added output of radiative heating rates for RRTMG
	74	!
[1683]	75	! 1682 2015-10-07 23:56:08Z knoop
	76	! Code annotations made doxygen readable
	77	!
[1586]	78	! 1585 2015-04-30 07:05:52Z maronga
	79	! Added support for RRTMG
	80	!
[1552]	81	! 1551 2015-03-03 14:18:16Z maronga
[1551]	82	! Added suppport for land surface model and radiation model output. In the course
	83	! of this action, the limits for vertical loops have been changed (from nzb and
	84	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	85	! Moreover, a new vertical grid zs was introduced.
[1329]	86	!
[1360]	87	! 1359 2014-04-11 17:15:14Z hoffmann
	88	! New particle structure integrated.
	89	!
[1354]	90	! 1353 2014-04-08 15:21:23Z heinze
	91	! REAL constants provided with KIND-attribute
	92	!
[1329]	93	! 1327 2014-03-21 11:00:16Z raasch
	94	! parts concerning avs output removed,
	95	! -netcdf output queries
	96	!
[1321]	97	! 1320 2014-03-20 08:40:49Z raasch
[1320]	98	! ONLY-attribute added to USE-statements,
	99	! kind-parameters added to all INTEGER and REAL declaration statements,
	100	! kinds are defined in new module kinds,
	101	! old module precision_kind is removed,
	102	! revision history before 2012 removed,
	103	! comment fields (!:) to be used for variable explanations added to
	104	! all variable declaration statements
[674]	105	!
[1319]	106	! 1318 2014-03-17 13:35:16Z raasch
	107	! barrier argument removed from cpu_log,
	108	! module interfaces removed
	109	!
[1309]	110	! 1308 2014-03-13 14:58:42Z fricke
	111	! Check, if the limit of the time dimension is exceeded for parallel output
	112	! To increase the performance for parallel output, the following is done:
	113	! - Update of time axis is only done by PE0
	114	!
[1245]	115	! 1244 2013-10-31 08:16:56Z raasch
	116	! Bugfix for index bounds in case of 3d-parallel output
	117	!
[1116]	118	! 1115 2013-03-26 18:16:16Z hoffmann
	119	! ql is calculated by calc_liquid_water_content
	120	!
[1107]	121	! 1106 2013-03-04 05:31:38Z raasch
	122	! array_kind renamed precision_kind
	123	!
[1077]	124	! 1076 2012-12-05 08:30:18Z hoffmann
	125	! Bugfix in output of ql
	126	!
[1054]	127	! 1053 2012-11-13 17:11:03Z hoffmann
	128	! +nr, qr, prr, qc and averaged quantities
	129	!
[1037]	130	! 1036 2012-10-22 13:43:42Z raasch
	131	! code put under GPL (PALM 3.9)
	132	!
[1035]	133	! 1031 2012-10-19 14:35:30Z raasch
	134	! netCDF4 without parallel file support implemented
	135	!
[1008]	136	! 1007 2012-09-19 14:30:36Z franke
	137	! Bugfix: missing calculation of ql_vp added
	138	!
[1]	139	! Revision 1.1 1997/09/03 06:29:36 raasch
	140	! Initial revision
	141	!
	142	!
	143	! Description:
	144	! ------------
[1682]	145	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	146	!------------------------------------------------------------------------------!
[1682]	147	SUBROUTINE data_output_3d( av )
	148
[1]	149
[1320]	150	USE arrays_3d, &
[2031]	151	ONLY: e, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, sa, tend, &
[1960]	152	u, v, vpt, w
[1320]	153
[1]	154	USE averaging
[1320]	155
	156	USE cloud_parameters, &
[1849]	157	ONLY: l_d_cp, pt_d_t
[1320]	158
	159	USE control_parameters, &
[1822]	160	ONLY: cloud_physics, do3d, do3d_no, do3d_time_count, io_blocks, &
	161	io_group, message_string, ntdim_3d, nz_do3d, psolver, &
[2011]	162	simulated_time, time_since_reference_point, urban_surface, &
	163	varnamelength
[1320]	164
	165	USE cpulog, &
	166	ONLY: log_point, cpu_log
	167
	168	USE indices, &
[1822]	169	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb
[1320]	170
	171	USE kinds
	172
[1551]	173	USE land_surface_model_mod, &
[1972]	174	ONLY: land_surface, lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	175
[1783]	176	#if defined( __netcdf )
	177	USE NETCDF
	178	#endif
	179
	180	USE netcdf_interface, &
	181	ONLY: id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
	182	netcdf_data_format, netcdf_handle_error
[1320]	183
	184	USE particle_attributes, &
[1359]	185	ONLY: grid_particles, number_of_particles, particles, &
	186	particle_advection_start, prt_count
[1320]	187
[1]	188	USE pegrid
	189
[1585]	190	USE radiation_model_mod, &
[1976]	191	ONLY: radiation, radiation_data_output_3d
[1585]	192
[2007]	193	USE urban_surface_mod, &
[2011]	194	ONLY: nzub, nzut, usm_data_output_3d
[1585]	195
[2007]	196
[1]	197	IMPLICIT NONE
	198
[1682]	199	INTEGER(iwp) :: av !<
	200	INTEGER(iwp) :: i !<
	201	INTEGER(iwp) :: if !<
	202	INTEGER(iwp) :: j !<
	203	INTEGER(iwp) :: k !<
	204	INTEGER(iwp) :: n !<
	205	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	206	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	207
[1682]	208	LOGICAL :: found !<
	209	LOGICAL :: resorted !<
[1]	210
[1682]	211	REAL(wp) :: mean_r !<
	212	REAL(wp) :: s_r2 !<
	213	REAL(wp) :: s_r3 !<
[1]	214
[1682]	215	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	216
[1682]	217	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	218
[2011]	219	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	220
[1]	221	!
	222	!-- Return, if nothing to output
	223	IF ( do3d_no(av) == 0 ) RETURN
	224
	225	CALL cpu_log (log_point(14),'data_output_3d','start')
	226
	227	!
	228	!-- Open output file.
	229	!-- Also creates coordinate and fld-file for AVS.
[1031]	230	!-- For classic or 64bit netCDF output or output of other (old) data formats,
[493]	231	!-- for a run on more than one PE, each PE opens its own file and
[1]	232	!-- writes the data of its subdomain in binary format (regardless of the format
	233	!-- the user has requested). After the run, these files are combined to one
	234	!-- file by combine_plot_fields in the format requested by the user (netcdf
[493]	235	!-- and/or avs).
[1031]	236	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	237	IF ( netcdf_data_format < 5 ) THEN
	238	CALL check_open( 30 )
	239	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	240	ELSE
[1327]	241	CALL check_open( 106+av*10 )
[493]	242	ENDIF
[1]	243
	244	!
[1745]	245	!-- For parallel netcdf output the time axis must be limited. Return, if this
	246	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	247	!-- the given end time by the length of the given output interval.
	248	IF ( netcdf_data_format > 4 ) THEN
	249	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	250	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	251	simulated_time, '&because the maximum ', &
	252	'number of output time levels is ', &
	253	'exceeded.'
	254	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	255	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	256	RETURN
	257	ENDIF
	258	ENDIF
	259
	260	!
[1031]	261	!-- Update the netCDF time axis
[1308]	262	!-- In case of parallel output, this is only done by PE0 to increase the
	263	!-- performance.
[1]	264	#if defined( __netcdf )
[1308]	265	do3d_time_count(av) = do3d_time_count(av) + 1
	266	IF ( myid == 0 ) THEN
[1327]	267	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	268	(/ time_since_reference_point /), &
	269	start = (/ do3d_time_count(av) /), &
	270	count = (/ 1 /) )
[1783]	271	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	272	ENDIF
	273	#endif
	274
	275	!
	276	!-- Loop over all variables to be written.
	277	if = 1
	278
	279	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	280
[1]	281	!
[2007]	282	!-- Temporary solution to account for data output within the new urban
	283	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	284	!-- Store the array chosen on the temporary array.
[2007]	285	trimvar = TRIM( do3d(av,if) )
[2011]	286	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	287	trimvar = 'usm_output'
	288	resorted = .TRUE.
	289	nzb_do = nzub
	290	nzt_do = nzut
	291	ELSE
	292	resorted = .FALSE.
	293	nzb_do = nzb
	294	nzt_do = nz_do3d
	295	ENDIF
[1551]	296	!
[1980]	297	!-- Set flag to steer output of radiation, land-surface, or user-defined
	298	!-- quantities
	299	found = .FALSE.
	300	!
[1551]	301	!-- Allocate a temporary array with the desired output dimensions.
	302	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) )
	303
[2007]	304	SELECT CASE ( trimvar )
[1]	305
	306	CASE ( 'e' )
	307	IF ( av == 0 ) THEN
	308	to_be_resorted => e
	309	ELSE
	310	to_be_resorted => e_av
	311	ENDIF
	312
[771]	313	CASE ( 'lpt' )
	314	IF ( av == 0 ) THEN
	315	to_be_resorted => pt
	316	ELSE
	317	to_be_resorted => lpt_av
	318	ENDIF
	319
[1053]	320	CASE ( 'nr' )
	321	IF ( av == 0 ) THEN
	322	to_be_resorted => nr
	323	ELSE
	324	to_be_resorted => nr_av
	325	ENDIF
	326
[1]	327	CASE ( 'p' )
	328	IF ( av == 0 ) THEN
[727]	329	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	330	to_be_resorted => p
	331	ELSE
[727]	332	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	333	to_be_resorted => p_av
	334	ENDIF
	335
	336	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	337	IF ( av == 0 ) THEN
[1359]	338	IF ( simulated_time >= particle_advection_start ) THEN
	339	tend = prt_count
	340	CALL exchange_horiz( tend, nbgp )
	341	ELSE
	342	tend = 0.0_wp
	343	ENDIF
[667]	344	DO i = nxlg, nxrg
	345	DO j = nysg, nyng
[1551]	346	DO k = nzb_do, nzt_do
[1]	347	local_pf(i,j,k) = tend(k,j,i)
	348	ENDDO
	349	ENDDO
	350	ENDDO
	351	resorted = .TRUE.
	352	ELSE
[667]	353	CALL exchange_horiz( pc_av, nbgp )
[1]	354	to_be_resorted => pc_av
	355	ENDIF
	356
[1359]	357	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	358	IF ( av == 0 ) THEN
[1359]	359	IF ( simulated_time >= particle_advection_start ) THEN
	360	DO i = nxl, nxr
	361	DO j = nys, nyn
[1551]	362	DO k = nzb_do, nzt_do
[1359]	363	number_of_particles = prt_count(k,j,i)
	364	IF (number_of_particles <= 0) CYCLE
	365	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	366	s_r2 = 0.0_wp
	367	s_r3 = 0.0_wp
	368	DO n = 1, number_of_particles
	369	IF ( particles(n)%particle_mask ) THEN
	370	s_r2 = s_r2 + particles(n)%radius*2 &
	371	particles(n)%weight_factor
	372	s_r3 = s_r3 + particles(n)%radius*3 &
	373	particles(n)%weight_factor
	374	ENDIF
	375	ENDDO
	376	IF ( s_r2 > 0.0_wp ) THEN
	377	mean_r = s_r3 / s_r2
	378	ELSE
	379	mean_r = 0.0_wp
	380	ENDIF
	381	tend(k,j,i) = mean_r
[1]	382	ENDDO
	383	ENDDO
	384	ENDDO
[1359]	385	CALL exchange_horiz( tend, nbgp )
	386	ELSE
	387	tend = 0.0_wp
	388	ENDIF
[667]	389	DO i = nxlg, nxrg
	390	DO j = nysg, nyng
[1551]	391	DO k = nzb_do, nzt_do
[1]	392	local_pf(i,j,k) = tend(k,j,i)
	393	ENDDO
	394	ENDDO
	395	ENDDO
	396	resorted = .TRUE.
	397	ELSE
[667]	398	CALL exchange_horiz( pr_av, nbgp )
[1]	399	to_be_resorted => pr_av
	400	ENDIF
	401
[1053]	402	CASE ( 'prr' )
	403	IF ( av == 0 ) THEN
	404	CALL exchange_horiz( prr, nbgp )
	405	DO i = nxlg, nxrg
	406	DO j = nysg, nyng
[1822]	407	DO k = nzb_do, nzt_do
[1053]	408	local_pf(i,j,k) = prr(k,j,i)
	409	ENDDO
	410	ENDDO
	411	ENDDO
	412	ELSE
	413	CALL exchange_horiz( prr_av, nbgp )
	414	DO i = nxlg, nxrg
	415	DO j = nysg, nyng
[1822]	416	DO k = nzb_do, nzt_do
[1053]	417	local_pf(i,j,k) = prr_av(k,j,i)
	418	ENDDO
	419	ENDDO
	420	ENDDO
	421	ENDIF
	422	resorted = .TRUE.
	423
[1]	424	CASE ( 'pt' )
	425	IF ( av == 0 ) THEN
	426	IF ( .NOT. cloud_physics ) THEN
	427	to_be_resorted => pt
	428	ELSE
[667]	429	DO i = nxlg, nxrg
	430	DO j = nysg, nyng
[1551]	431	DO k = nzb_do, nzt_do
[1320]	432	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	433	pt_d_t(k) * &
[1]	434	ql(k,j,i)
	435	ENDDO
	436	ENDDO
	437	ENDDO
	438	resorted = .TRUE.
	439	ENDIF
	440	ELSE
	441	to_be_resorted => pt_av
	442	ENDIF
	443
	444	CASE ( 'q' )
	445	IF ( av == 0 ) THEN
	446	to_be_resorted => q
	447	ELSE
	448	to_be_resorted => q_av
	449	ENDIF
[691]	450
[1053]	451	CASE ( 'qc' )
[1]	452	IF ( av == 0 ) THEN
[1115]	453	to_be_resorted => qc
[1]	454	ELSE
[1115]	455	to_be_resorted => qc_av
[1]	456	ENDIF
	457
[1053]	458	CASE ( 'ql' )
	459	IF ( av == 0 ) THEN
[1115]	460	to_be_resorted => ql
[1053]	461	ELSE
[1115]	462	to_be_resorted => ql_av
[1053]	463	ENDIF
	464
[1]	465	CASE ( 'ql_c' )
	466	IF ( av == 0 ) THEN
	467	to_be_resorted => ql_c
	468	ELSE
	469	to_be_resorted => ql_c_av
	470	ENDIF
	471
	472	CASE ( 'ql_v' )
	473	IF ( av == 0 ) THEN
	474	to_be_resorted => ql_v
	475	ELSE
	476	to_be_resorted => ql_v_av
	477	ENDIF
	478
	479	CASE ( 'ql_vp' )
	480	IF ( av == 0 ) THEN
[1359]	481	IF ( simulated_time >= particle_advection_start ) THEN
	482	DO i = nxl, nxr
	483	DO j = nys, nyn
[1551]	484	DO k = nzb_do, nzt_do
[1359]	485	number_of_particles = prt_count(k,j,i)
	486	IF (number_of_particles <= 0) CYCLE
	487	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	488	DO n = 1, number_of_particles
	489	IF ( particles(n)%particle_mask ) THEN
	490	tend(k,j,i) = tend(k,j,i) + &
	491	particles(n)%weight_factor / &
	492	prt_count(k,j,i)
	493	ENDIF
	494	ENDDO
[1007]	495	ENDDO
	496	ENDDO
	497	ENDDO
[1359]	498	CALL exchange_horiz( tend, nbgp )
	499	ELSE
	500	tend = 0.0_wp
	501	ENDIF
[1007]	502	DO i = nxlg, nxrg
	503	DO j = nysg, nyng
[1551]	504	DO k = nzb_do, nzt_do
[1007]	505	local_pf(i,j,k) = tend(k,j,i)
	506	ENDDO
	507	ENDDO
	508	ENDDO
	509	resorted = .TRUE.
[1]	510	ELSE
[1007]	511	CALL exchange_horiz( ql_vp_av, nbgp )
[1]	512	to_be_resorted => ql_vp_av
	513	ENDIF
	514
[1053]	515	CASE ( 'qr' )
	516	IF ( av == 0 ) THEN
	517	to_be_resorted => qr
	518	ELSE
	519	to_be_resorted => qr_av
	520	ENDIF
	521
[1]	522	CASE ( 'qv' )
	523	IF ( av == 0 ) THEN
[667]	524	DO i = nxlg, nxrg
	525	DO j = nysg, nyng
[1551]	526	DO k = nzb_do, nzt_do
[1]	527	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	528	ENDDO
	529	ENDDO
	530	ENDDO
	531	resorted = .TRUE.
	532	ELSE
	533	to_be_resorted => qv_av
	534	ENDIF
	535
[2031]	536	CASE ( 'rho_ocean' )
[96]	537	IF ( av == 0 ) THEN
[2031]	538	to_be_resorted => rho_ocean
[96]	539	ELSE
[2031]	540	to_be_resorted => rho_ocean_av
[96]	541	ENDIF
[691]	542
[1]	543	CASE ( 's' )
	544	IF ( av == 0 ) THEN
[1960]	545	to_be_resorted => s
[1]	546	ELSE
[355]	547	to_be_resorted => s_av
[1]	548	ENDIF
[691]	549
[96]	550	CASE ( 'sa' )
	551	IF ( av == 0 ) THEN
	552	to_be_resorted => sa
	553	ELSE
	554	to_be_resorted => sa_av
	555	ENDIF
[691]	556
[1]	557	CASE ( 'u' )
	558	IF ( av == 0 ) THEN
	559	to_be_resorted => u
	560	ELSE
	561	to_be_resorted => u_av
	562	ENDIF
	563
	564	CASE ( 'v' )
	565	IF ( av == 0 ) THEN
	566	to_be_resorted => v
	567	ELSE
	568	to_be_resorted => v_av
	569	ENDIF
	570
	571	CASE ( 'vpt' )
	572	IF ( av == 0 ) THEN
	573	to_be_resorted => vpt
	574	ELSE
	575	to_be_resorted => vpt_av
	576	ENDIF
	577
	578	CASE ( 'w' )
	579	IF ( av == 0 ) THEN
	580	to_be_resorted => w
	581	ELSE
	582	to_be_resorted => w_av
	583	ENDIF
[2007]	584	!
	585	!-- Block of urban surface model outputs
	586	CASE ( 'usm_output' )
	587	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	588	nzb_do, nzt_do )
[1]	589
	590	CASE DEFAULT
[1972]	591
[1]	592	!
[1972]	593	!-- Land surface quantity
	594	IF ( land_surface ) THEN
	595	!
	596	!-- For soil model quantities, it is required to re-allocate local_pf
	597	nzb_do = nzb_soil
	598	nzt_do = nzt_soil
	599
	600	DEALLOCATE ( local_pf )
	601	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) )
	602
	603	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	604	resorted = .TRUE.
[1976]	605
	606	!
	607	!-- If no soil model variable was found, re-allocate local_pf
	608	IF ( .NOT. found ) THEN
	609	nzb_do = nzb
	610	nzt_do = nz_do3d
	611
	612	DEALLOCATE ( local_pf )
	613	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) )
	614	ENDIF
	615
[1972]	616	ENDIF
	617
	618	!
[1976]	619	!-- Radiation quantity
	620	IF ( .NOT. found .AND. radiation ) THEN
	621	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	622	local_pf )
	623	resorted = .TRUE.
	624	ENDIF
	625
	626	!
[1]	627	!-- User defined quantity
[1972]	628	IF ( .NOT. found ) THEN
	629	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	630	nzb_do, nzt_do )
	631	resorted = .TRUE.
	632	ENDIF
[1]	633
[254]	634	IF ( .NOT. found ) THEN
[1320]	635	message_string = 'no output available for: ' // &
[274]	636	TRIM( do3d(av,if) )
[254]	637	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	638	ENDIF
	639
	640	END SELECT
	641
	642	!
	643	!-- Resort the array to be output, if not done above
	644	IF ( .NOT. resorted ) THEN
[667]	645	DO i = nxlg, nxrg
	646	DO j = nysg, nyng
[1551]	647	DO k = nzb_do, nzt_do
[1]	648	local_pf(i,j,k) = to_be_resorted(k,j,i)
	649	ENDDO
	650	ENDDO
	651	ENDDO
	652	ENDIF
	653
	654	!
[1327]	655	!-- Output of the 3D-array
	656	#if defined( __parallel )
	657	IF ( netcdf_data_format < 5 ) THEN
[1]	658	!
[1327]	659	!-- Non-parallel netCDF output. Data is output in parallel in
	660	!-- FORTRAN binary format here, and later collected into one file by
	661	!-- combine_plot_fields
	662	IF ( myid == 0 ) THEN
	663	WRITE ( 30 ) time_since_reference_point, &
	664	do3d_time_count(av), av
[1]	665	ENDIF
[1327]	666	DO i = 0, io_blocks-1
	667	IF ( i == io_group ) THEN
[1551]	668	WRITE ( 30 ) nxlg, nxrg, nysg, nyng, nzb_do, nzt_do
	669	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	670	ENDIF
[1972]	671
[1327]	672	CALL MPI_BARRIER( comm2d, ierr )
[1972]	673
[1327]	674	ENDDO
[559]	675
[1327]	676	ELSE
[646]	677	#if defined( __netcdf )
[493]	678	!
[1327]	679	!-- Parallel output in netCDF4/HDF5 format.
	680	!-- Do not output redundant ghost point data except for the
	681	!-- boundaries of the total domain.
	682	IF ( nxr == nx .AND. nyn /= ny ) THEN
	683	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	684	local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	685	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	686	count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[1327]	687	ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	688	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	689	local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	690	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	691	count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
[1327]	692	ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	693	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	694	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	695	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	696	count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
[1327]	697	ELSE
	698	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	699	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	700	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	701	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[1327]	702	ENDIF
[1783]	703	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	704	#endif
[1327]	705	ENDIF
[1]	706	#else
	707	#if defined( __netcdf )
[1327]	708	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	709	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	710	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[1551]	711	count = (/ nx+2, ny+2, nzt_do-nzb_do+1, 1 /) )
[1783]	712	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	713	#endif
	714	#endif
	715
	716	if = if + 1
	717
	718	!
[1551]	719	!-- Deallocate temporary array
	720	DEALLOCATE ( local_pf )
[1]	721
[1551]	722	ENDDO
[1]	723
[1318]	724	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	725
	726	!
	727	!-- Formats.
[1320]	728	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	729	'label = ',A,A)
	730
	731	END SUBROUTINE data_output_3d

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