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data_output_3d.f90 @ 1007

Last change on this file since 1007 was 1007, checked in by franke, 12 years ago

Bugfixes

Missing calculation of mean particle weighting factor for output added. (data_output_2d, data_output_3d, data_output_mask, sum_up_3d_data)
Calculation of mean particle radius for output now considers the weighting factor. (data_output_mask)
Calculation of sugrid-scale buoyancy flux for humidity and cloud droplets corrected. (flow_statistics)
Factor in calculation of enhancement factor for collision efficencies corrected. (lpm_collision_kernels)
Calculation of buoyancy production now considers the liquid water mixing ratio in case of cloud droplets. (production_e)

Changes

Calculation of buoyancy flux for humidity in case of WS-scheme is now using turbulent fluxes of WS-scheme. (flow_statistics)
Calculation of the collision kernels now in SI units. (lpm_collision_kernels)

Property svn:keywords set to Id

File size: 17.6 KB

Rev	Line
[1]	1	SUBROUTINE data_output_3d( av )
	2
	3	!------------------------------------------------------------------------------!
[254]	4	! Current revisions:
[1]	5	! -----------------
[1007]	6	! Bugfix: missing calculation of ql_vp added
[674]	7	!
[392]	8	! Former revisions:
	9	! -----------------
	10	! $Id: data_output_3d.f90 1007 2012-09-19 14:30:36Z franke $
	11	!
[791]	12	! 790 2011-11-29 03:11:20Z raasch
	13	! bugfix: calculation of 'pr' must depend on the particle weighting factor,
	14	! nzt+1 replaced by nz_do3d for 'pr'
	15	!
[772]	16	! 771 2011-10-27 10:56:21Z heinze
	17	! +lpt
	18	!
[760]	19	! 759 2011-09-15 13:58:31Z raasch
	20	! Splitting of parallel I/O
	21	!
[728]	22	! 727 2011-04-20 20:05:25Z suehring
	23	! Exchange ghost layers also for p_av.
	24	!
[726]	25	! 725 2011-04-11 09:37:01Z suehring
	26	! Exchange ghost layers for p regardless of used pressure solver (except SOR).
	27	!
[692]	28	! 691 2011-03-04 08:45:30Z maronga
	29	! Replaced simulated_time by time_since_reference_point
	30	!
[674]	31	! 673 2011-01-18 16:19:48Z suehring
	32	! When using Multigrid or SOR solver an additional CALL exchange_horiz is
	33	! is needed for pressure output.
	34	!
[668]	35	! 667 2010-12-23 12:06:00Z suehring/gryschka
	36	! nxl-1, nxr+1, nys-1, nyn+1 replaced by nxlg, nxrg, nysg, nyng in loops and
	37	! allocation of arrays. Calls of exchange_horiz are modified.
	38	! Skip-value skip_do_avs changed to a dynamic adaption of ghost points.
	39	!
[647]	40	! 646 2010-12-15 13:03:52Z raasch
	41	! bugfix: missing define statements for netcdf added
	42	!
[494]	43	! 493 2010-03-01 08:30:24Z raasch
	44	! NetCDF4 support (parallel output)
	45	!
[392]	46	! 355 2009-07-17 01:03:01Z letzel
[291]	47	! simulated_time in NetCDF output replaced by time_since_reference_point.
[263]	48	! Output of NetCDF messages with aid of message handling routine.
[254]	49	! Output of messages replaced by message handling routine.
[355]	50	! Bugfix: to_be_resorted => s_av for time-averaged scalars
[1]	51	!
[98]	52	! 96 2007-06-04 08:07:41Z raasch
	53	! Output of density and salinity
	54	!
[77]	55	! 75 2007-03-22 09:54:05Z raasch
	56	! 2nd+3rd argument removed from exchange horiz
	57	!
[3]	58	! RCS Log replace by Id keyword, revision history cleaned up
	59	!
[1]	60	! Revision 1.3 2006/06/02 15:18:59 raasch
	61	! +argument "found", -argument grid in call of routine user_data_output_3d
	62	!
	63	! Revision 1.2 2006/02/23 10:23:07 raasch
	64	! Former subroutine plot_3d renamed data_output_3d, pl.. renamed do..,
	65	! .._anz renamed .._n,
	66	! output extended to (almost) all quantities, output of user-defined quantities
	67	!
	68	! Revision 1.1 1997/09/03 06:29:36 raasch
	69	! Initial revision
	70	!
	71	!
	72	! Description:
	73	! ------------
	74	! Output of the 3D-arrays in NetCDF and/or AVS format.
	75	!------------------------------------------------------------------------------!
	76
	77	USE array_kind
	78	USE arrays_3d
	79	USE averaging
	80	USE cloud_parameters
	81	USE control_parameters
	82	USE cpulog
	83	USE indices
	84	USE interfaces
	85	USE netcdf_control
	86	USE particle_attributes
	87	USE pegrid
	88
	89	IMPLICIT NONE
	90
	91	CHARACTER (LEN=9) :: simulated_time_mod
	92
[559]	93	INTEGER :: av, i, if, j, k, n, pos, prec, psi
[1]	94
	95	LOGICAL :: found, resorted
	96
	97	REAL :: mean_r, s_r3, s_r4
	98
	99	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: local_pf
	100
	101	REAL, DIMENSION(:,:,:), POINTER :: to_be_resorted
	102
	103	!
	104	!-- Return, if nothing to output
	105	IF ( do3d_no(av) == 0 ) RETURN
	106
	107	CALL cpu_log (log_point(14),'data_output_3d','start')
	108
	109	!
	110	!-- Open output file.
	111	!-- Also creates coordinate and fld-file for AVS.
[493]	112	!-- For classic or 64bit NetCDF output or output of other (old) data formats,
	113	!-- for a run on more than one PE, each PE opens its own file and
[1]	114	!-- writes the data of its subdomain in binary format (regardless of the format
	115	!-- the user has requested). After the run, these files are combined to one
	116	!-- file by combine_plot_fields in the format requested by the user (netcdf
[493]	117	!-- and/or avs).
	118	!-- For NetCDF4/HDF5 output, data is written in parallel into one file.
	119	IF ( netcdf_output ) THEN
	120	IF ( netcdf_data_format < 3 ) THEN
	121	CALL check_open( 30 )
	122	IF ( myid == 0 ) CALL check_open( 106+av*10 )
	123	ELSE
	124	CALL check_open( 106+av*10 )
	125	ENDIF
	126	ELSE
	127	IF ( avs_output .OR. ( numprocs > 1 ) ) CALL check_open( 30 )
	128	ENDIF
[1]	129
	130	!
	131	!-- Allocate a temporary array with the desired output dimensions.
[667]	132	ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb:nz_do3d) )
[1]	133
	134	!
	135	!-- Update the NetCDF time axis
	136	#if defined( __netcdf )
[493]	137	IF ( myid == 0 .OR. netcdf_data_format > 2 ) THEN
	138	do3d_time_count(av) = do3d_time_count(av) + 1
	139	IF ( netcdf_output ) THEN
	140	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	141	(/ time_since_reference_point /), &
	142	start = (/ do3d_time_count(av) /), &
	143	count = (/ 1 /) )
	144	CALL handle_netcdf_error( 'data_output_3d', 376 )
	145	ENDIF
[1]	146	ENDIF
	147	#endif
	148
	149	!
	150	!-- Loop over all variables to be written.
	151	if = 1
	152
	153	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
	154	!
	155	!-- Set the precision for data compression.
	156	IF ( do3d_compress ) THEN
	157	DO i = 1, 100
	158	IF ( plot_3d_precision(i)%variable == do3d(av,if) ) THEN
	159	prec = plot_3d_precision(i)%precision
	160	EXIT
	161	ENDIF
	162	ENDDO
	163	ENDIF
	164
	165	!
	166	!-- Store the array chosen on the temporary array.
	167	resorted = .FALSE.
	168	SELECT CASE ( TRIM( do3d(av,if) ) )
	169
	170	CASE ( 'e' )
	171	IF ( av == 0 ) THEN
	172	to_be_resorted => e
	173	ELSE
	174	to_be_resorted => e_av
	175	ENDIF
	176
[771]	177	CASE ( 'lpt' )
	178	IF ( av == 0 ) THEN
	179	to_be_resorted => pt
	180	ELSE
	181	to_be_resorted => lpt_av
	182	ENDIF
	183
[1]	184	CASE ( 'p' )
	185	IF ( av == 0 ) THEN
[727]	186	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	187	to_be_resorted => p
	188	ELSE
[727]	189	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	190	to_be_resorted => p_av
	191	ENDIF
	192
	193	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	194	IF ( av == 0 ) THEN
	195	tend = prt_count
[667]	196	CALL exchange_horiz( tend, nbgp )
	197	DO i = nxlg, nxrg
	198	DO j = nysg, nyng
[1]	199	DO k = nzb, nz_do3d
	200	local_pf(i,j,k) = tend(k,j,i)
	201	ENDDO
	202	ENDDO
	203	ENDDO
	204	resorted = .TRUE.
	205	ELSE
[667]	206	CALL exchange_horiz( pc_av, nbgp )
[1]	207	to_be_resorted => pc_av
	208	ENDIF
	209
	210	CASE ( 'pr' ) ! mean particle radius
	211	IF ( av == 0 ) THEN
	212	DO i = nxl, nxr
	213	DO j = nys, nyn
[790]	214	DO k = nzb, nz_do3d
[1]	215	psi = prt_start_index(k,j,i)
	216	s_r3 = 0.0
	217	s_r4 = 0.0
	218	DO n = psi, psi+prt_count(k,j,i)-1
[790]	219	s_r3 = s_r3 + particles(n)%radius*3 &
	220	particles(n)%weight_factor
	221	s_r4 = s_r4 + particles(n)%radius*4 &
	222	particles(n)%weight_factor
[1]	223	ENDDO
	224	IF ( s_r3 /= 0.0 ) THEN
	225	mean_r = s_r4 / s_r3
	226	ELSE
	227	mean_r = 0.0
	228	ENDIF
	229	tend(k,j,i) = mean_r
	230	ENDDO
	231	ENDDO
	232	ENDDO
[667]	233	CALL exchange_horiz( tend, nbgp )
	234	DO i = nxlg, nxrg
	235	DO j = nysg, nyng
[790]	236	DO k = nzb, nz_do3d
[1]	237	local_pf(i,j,k) = tend(k,j,i)
	238	ENDDO
	239	ENDDO
	240	ENDDO
	241	resorted = .TRUE.
	242	ELSE
[667]	243	CALL exchange_horiz( pr_av, nbgp )
[1]	244	to_be_resorted => pr_av
	245	ENDIF
	246
	247	CASE ( 'pt' )
	248	IF ( av == 0 ) THEN
	249	IF ( .NOT. cloud_physics ) THEN
	250	to_be_resorted => pt
	251	ELSE
[667]	252	DO i = nxlg, nxrg
	253	DO j = nysg, nyng
[1]	254	DO k = nzb, nz_do3d
	255	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	256	pt_d_t(k) * &
	257	ql(k,j,i)
	258	ENDDO
	259	ENDDO
	260	ENDDO
	261	resorted = .TRUE.
	262	ENDIF
	263	ELSE
	264	to_be_resorted => pt_av
	265	ENDIF
	266
	267	CASE ( 'q' )
	268	IF ( av == 0 ) THEN
	269	to_be_resorted => q
	270	ELSE
	271	to_be_resorted => q_av
	272	ENDIF
[691]	273
[1]	274	CASE ( 'ql' )
	275	IF ( av == 0 ) THEN
	276	to_be_resorted => ql
	277	ELSE
	278	to_be_resorted => ql_av
	279	ENDIF
	280
	281	CASE ( 'ql_c' )
	282	IF ( av == 0 ) THEN
	283	to_be_resorted => ql_c
	284	ELSE
	285	to_be_resorted => ql_c_av
	286	ENDIF
	287
	288	CASE ( 'ql_v' )
	289	IF ( av == 0 ) THEN
	290	to_be_resorted => ql_v
	291	ELSE
	292	to_be_resorted => ql_v_av
	293	ENDIF
	294
	295	CASE ( 'ql_vp' )
	296	IF ( av == 0 ) THEN
[1007]	297	DO i = nxl, nxr
	298	DO j = nys, nyn
	299	DO k = nzb, nz_do3d
	300	psi = prt_start_index(k,j,i)
	301	DO n = psi, psi+prt_count(k,j,i)-1
	302	tend(k,j,i) = tend(k,j,i) + &
	303	particles(n)%weight_factor / &
	304	prt_count(k,j,i)
	305	ENDDO
	306	ENDDO
	307	ENDDO
	308	ENDDO
	309	CALL exchange_horiz( tend, nbgp )
	310	DO i = nxlg, nxrg
	311	DO j = nysg, nyng
	312	DO k = nzb, nz_do3d
	313	local_pf(i,j,k) = tend(k,j,i)
	314	ENDDO
	315	ENDDO
	316	ENDDO
	317	resorted = .TRUE.
[1]	318	ELSE
[1007]	319	CALL exchange_horiz( ql_vp_av, nbgp )
[1]	320	to_be_resorted => ql_vp_av
	321	ENDIF
	322
	323	CASE ( 'qv' )
	324	IF ( av == 0 ) THEN
[667]	325	DO i = nxlg, nxrg
	326	DO j = nysg, nyng
[1]	327	DO k = nzb, nz_do3d
	328	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	329	ENDDO
	330	ENDDO
	331	ENDDO
	332	resorted = .TRUE.
	333	ELSE
	334	to_be_resorted => qv_av
	335	ENDIF
	336
[96]	337	CASE ( 'rho' )
	338	IF ( av == 0 ) THEN
	339	to_be_resorted => rho
	340	ELSE
	341	to_be_resorted => rho_av
	342	ENDIF
[691]	343
[1]	344	CASE ( 's' )
	345	IF ( av == 0 ) THEN
	346	to_be_resorted => q
	347	ELSE
[355]	348	to_be_resorted => s_av
[1]	349	ENDIF
[691]	350
[96]	351	CASE ( 'sa' )
	352	IF ( av == 0 ) THEN
	353	to_be_resorted => sa
	354	ELSE
	355	to_be_resorted => sa_av
	356	ENDIF
[691]	357
[1]	358	CASE ( 'u' )
	359	IF ( av == 0 ) THEN
	360	to_be_resorted => u
	361	ELSE
	362	to_be_resorted => u_av
	363	ENDIF
	364
	365	CASE ( 'v' )
	366	IF ( av == 0 ) THEN
	367	to_be_resorted => v
	368	ELSE
	369	to_be_resorted => v_av
	370	ENDIF
	371
	372	CASE ( 'vpt' )
	373	IF ( av == 0 ) THEN
	374	to_be_resorted => vpt
	375	ELSE
	376	to_be_resorted => vpt_av
	377	ENDIF
	378
	379	CASE ( 'w' )
	380	IF ( av == 0 ) THEN
	381	to_be_resorted => w
	382	ELSE
	383	to_be_resorted => w_av
	384	ENDIF
	385
	386	CASE DEFAULT
	387	!
	388	!-- User defined quantity
	389	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	390	nz_do3d )
	391	resorted = .TRUE.
	392
[254]	393	IF ( .NOT. found ) THEN
[274]	394	message_string = 'no output available for: ' // &
	395	TRIM( do3d(av,if) )
[254]	396	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	397	ENDIF
	398
	399	END SELECT
	400
	401	!
	402	!-- Resort the array to be output, if not done above
	403	IF ( .NOT. resorted ) THEN
[667]	404	DO i = nxlg, nxrg
	405	DO j = nysg, nyng
[1]	406	DO k = nzb, nz_do3d
	407	local_pf(i,j,k) = to_be_resorted(k,j,i)
	408	ENDDO
	409	ENDDO
	410	ENDDO
	411	ENDIF
	412
	413	!
	414	!-- Output of the volume data information for the AVS-FLD-file.
	415	do3d_avs_n = do3d_avs_n + 1
	416	IF ( myid == 0 .AND. avs_output ) THEN
	417	!
	418	!-- AVS-labels must not contain any colons. Hence they must be removed
	419	!-- from the time character string.
	420	simulated_time_mod = simulated_time_chr
	421	DO WHILE ( SCAN( simulated_time_mod, ':' ) /= 0 )
	422	pos = SCAN( simulated_time_mod, ':' )
	423	simulated_time_mod(pos:pos) = '/'
	424	ENDDO
	425
	426	IF ( av == 0 ) THEN
	427	WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), &
	428	skip_do_avs, TRIM( do3d(av,if) ), &
	429	TRIM( simulated_time_mod )
	430	ELSE
	431	WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), &
	432	skip_do_avs, TRIM( do3d(av,if) ) // &
	433	' averaged', TRIM( simulated_time_mod )
	434	ENDIF
	435	!
	436	!-- Determine the Skip-value for the next array. Record end and start
	437	!-- require 4 byte each.
[759]	438	skip_do_avs = skip_do_avs + ( ( ( nx+2nbgp ) ( ny+2nbgp ) &
	439	( nz_do3d+1 ) ) * 4 + 8 )
[1]	440	ENDIF
	441
	442	!
	443	!-- Output of the 3D-array. (compressed/uncompressed)
	444	IF ( do3d_compress ) THEN
	445	!
	446	!-- Compression, output of compression information on FLD-file and output
	447	!-- of compressed data.
[559]	448	CALL write_compressed( local_pf, 30, 33, myid, nxl, nxr, nyn, nys, &
[667]	449	nzb, nz_do3d, prec, nbgp )
[1]	450	ELSE
	451	!
	452	!-- Uncompressed output.
	453	#if defined( __parallel )
[493]	454	IF ( netcdf_output ) THEN
	455	IF ( netcdf_data_format < 3 ) THEN
	456	!
	457	!-- Classic or 64bit format. Data is output in parallel in FORTRAN
	458	!-- binary format here, and later collected into one file by
	459	!-- combine_plot_fields
	460	IF ( myid == 0 ) THEN
[691]	461	WRITE ( 30 ) time_since_reference_point, &
	462	do3d_time_count(av), av
[493]	463	ENDIF
[759]	464	DO i = 0, io_blocks-1
	465	IF ( i == io_group ) THEN
	466	WRITE ( 30 ) nxlg, nxrg, nysg, nyng, nzb, nz_do3d
	467	WRITE ( 30 ) local_pf
	468	ENDIF
	469	#if defined( __parallel )
	470	CALL MPI_BARRIER( comm2d, ierr )
	471	#endif
	472	ENDDO
[559]	473
[493]	474	ELSE
[646]	475	#if defined( __netcdf )
[493]	476	!
	477	!-- Output in NetCDF4/HDF5 format.
	478	!-- Do not output redundant ghost point data except for the
	479	!-- boundaries of the total domain.
	480	IF ( nxr == nx .AND. nyn /= ny ) THEN
	481	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[667]	482	local_pf(nxl:nxrg,nys:nyn,nzb:nz_do3d), &
[493]	483	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
[667]	484	count = (/ nxr-nxl+1+nbgp, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
[493]	485	ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	486	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[667]	487	local_pf(nxl:nxr,nys:nyng,nzb:nz_do3d), &
[493]	488	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
[667]	489	count = (/ nxr-nxl+1, nyn-nys+1+nbgp, nz_do3d-nzb+1, 1 /) )
[493]	490	ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	491	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[667]	492	local_pf(nxl:nxrg,nys:nyng,nzb:nz_do3d), &
[493]	493	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
[667]	494	count = (/ nxr-nxl+1+nbgp, nyn-nys+1+nbgp, nz_do3d-nzb+1, 1 /) )
[493]	495	ELSE
	496	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	497	local_pf(nxl:nxr,nys:nyn,nzb:nz_do3d), &
	498	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
	499	count = (/ nxr-nxl+1, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
	500	ENDIF
	501	CALL handle_netcdf_error( 'data_output_3d', 386 )
[646]	502	#endif
[493]	503	ENDIF
[1]	504	ENDIF
	505	#else
	506	IF ( avs_output ) THEN
	507	WRITE ( 30 ) local_pf(nxl:nxr+1,nys:nyn+1,:)
	508	ENDIF
	509	#if defined( __netcdf )
	510	IF ( netcdf_output ) THEN
[493]	511
	512	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	513	local_pf(nxl:nxr+1,nys:nyn+1,nzb:nz_do3d), &
	514	start = (/ 1, 1, 1, do3d_time_count(av) /), &
	515	count = (/ nx+2, ny+2, nz_do3d-nzb+1, 1 /) )
	516	CALL handle_netcdf_error( 'data_output_3d', 446 )
	517
[1]	518	ENDIF
	519	#endif
	520	#endif
	521	ENDIF
	522
	523	if = if + 1
	524
	525	ENDDO
	526
	527	!
	528	!-- Deallocate temporary array.
	529	DEALLOCATE( local_pf )
	530
	531
	532	CALL cpu_log (log_point(14),'data_output_3d','stop','nobarrier')
	533
	534	!
	535	!-- Formats.
	536	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
	537	'label = ',A,A)
	538
	539	END SUBROUTINE data_output_3d

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