source: palm/trunk/SOURCE/CURRENT_MODIFICATIONS @ 375

Last change on this file since 375 was 367, checked in by maronga, 15 years ago

adapted for machine lck

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[34]1New:
2---
[367]3
4Adapted for machine lck
5(mrun, mbuild, subjob)
6
[366]7bc_lr/bc_ns  in most subroutines replaced by LOGICAL variables bc_lr_cyc,
8bc_ns_cyc for speed optimization
9(check_parameters, diffusion_u, diffusion_v, diffusion_w, modules)
10
[318]11Additional timestep criterion in case of simulations with plant canopy (timestep)
[316]12
[308]13Check for illegal entries in section_xy|xz|yz that exceed nz+1|ny+1|nx+1
14(check_parameters)
15
[264]16Clipping of dvrp output implemented. Default colourtable for particles
17implemented, particle attributes (color, dvrp_size) can be set with new
18parameters particle_color, particle_dvrpsize, color_interval,
[278]19dvrpsize_interval (init_dvrp, data_output_dvrp, modules, user_data_output_dvrp).
20Slicer attributes (dvrp) are set with new routine set_slicer_attributes_dvrp
21and are controlled with existing parameters slicer_range_limits.
22(set_slicer_attributes_dvrp)
[158]23
[291]24Ocean atmosphere coupling allows to use independent precursor runs in order
25to account for different spin-up times. The time when coupling has to be
26started is given by new inipar parameter coupling_start_time. The precursor
27ocean run has to be started using new mrun option "-y" in order to add
28appendix "_O" to all output files.
29(check_for_restart, check_parameters, data_output_2d, data_output_3d,
30data_output_profiles, data_output_ptseries, data_output_spectra,
31data_output_tseries, header, init_coupling, modules, mrun,
32parin, read_var_list, surface_coupler, time_integration, write_var_list)
33
[237]34Polygon reduction for topography and ground plate isosurface. Reduction level
35for buildings can be chosen with parameter cluster_size. (init_dvrp)
[34]36
[240]37External pressure gradient (check_parameters, header, init_3d_model, modules,
38parin, prognostic_equations, read_var_list, write_var_list)
[237]39
[240]40New topography case 'single_street_canyon' (header, init_grid, modules, parin,
41read_var_list, user_check_parameters, user_header, user_init_grid, write_var_list)
[237]42
[241]43Option to predefine a target bulk velocity for conserve_volume_flow
44(check_parameters, header, init_3d_model, modules, parin, read_var_list,
45write_var_list)
46
[343]47Option for user defined 2D data output in xy cross sections at z=nzb+1
48(data_output_2d, user_data_output_2d)
[240]49
[354]50xy cross section output of surface heatfluxes (latent, sensible)
51(average_3d_data, check_parameters, data_output_2d, modules, read_3d_binary,
52sum_up_3d_data, write_3d_binary)
[343]53
[354]54
[367]55average_3d_data, check_for_restart, check_parameters, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, init_coupling, init_dvrp, init_grid, init_3d_model, header, mbuild, modules, mrun, package_parin, parin, prognostic_equations, read_3d_binary, read_var_list, subjob, surface_coupler, timestep, time_integration, user_check_parameters, user_data_output_2d, user_data_output_dvrp, user_header, user_init_grid, write_3d_binary, write_var_list
[354]56
[278]57New: set_particle_attributes, set_slicer_attributes_dvrp
[240]58
[34]59Changed:
60-------
[359]61For extended NetCDF files, the updated title attribute includes an update of
62time_average_text where appropriate. (netcdf)
63
[347]64In case of restart runs without extension, initial profiles are not written
65to NetCDF-file anymore. (data_output_profiles, modules, read_var_list, write_var_list)
66
[329]67Small change in formatting of the message handling routine concering the output in the
68job protocoll. (message)
69
[328]70initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
71independent of turbulent_inflow (check_parameters, header, init_3d_model)
72
[314]732 NetCDF error numbers changed. (data_output_3d)
74
[311]75A Link to the website appendix_a.html is printed for further information
[314]76about the possible errors. (message)
[311]77
[291]78Temperature gradient criterion for estimating the boundary layer height
79replaced by the gradient criterion of Sullivan et al. (1998). (flow_statistics)
80
[288]81NetCDF unit attribute in timeseries output in case of statistic regions added
[314]82(netcdf)
[288]83
[263]84Output of NetCDF messages with aid of message handling routine.
85(check_open, close_file, data_output_2d, data_output_3d,
86data_output_profiles, data_output_ptseries, data_output_spectra,
87data_output_tseries, netcdf, output_particles_netcdf)
[189]88
[231]89Output of messages replaced by message handling routine.
[257]90(advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart,
91check_open, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp,
92data_output_profiles, data_output_spectra, fft_xy, flow_statistics, header,
93init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid,
94netcdf, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary,
[258]95read_var_list, surface_coupler, temperton_fft, timestep, user_actions,
96user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy,
97user_parin, user_read_restart_data, user_spectra )
[257]98
[276]99Maximum number of tails is calculated from maximum number of particles and
100skip_particles_for_tail (init_particles)
101
[336]102Value of vertical_particle_advection may differ for each particle group
103(advec_particles, header, modules)
104
[231]105First constant in array den also defined as type double. (eqn_state_seawater)
[225]106
[266]107Parameter dvrp_psize moved from particles_par to dvrp_graphics_par. (package_parin)
108
[256]109topography_grid_convention moved from userpar to inipar (check_parameters,
110header, parin, read_var_list, user_check_parameters, user_header,
111user_init_grid, user_parin, write_var_list)
[230]112
[305]113Default value of grid_matching changed to strict.
114
[343]115Adjustments for runs on lcxt4 (necessary due to an software update on CRAY) and
116for coupled runs on ibmy (mrun, subjob)
[231]117
[343]118advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart, check_open, check_parameters, close_file, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, eqn_state_seawater, fft_xy, flow_statistics, header, init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid, message, mrun, netcdf, output_particles_netcdf, package_parin, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary, read_var_list, sort_particles, subjob, user_check_parameters, user_header, user_init_grid, user_parin, surface_coupler, temperton_fft, timestep, user_actions, user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy, user_parin, user_read_restart_data, user_spectra, write_var_list
[256]119
[343]120
[34]121Errors:
122------
[366]123Bugfix: Output on unit 14 only if requested by write_binary.
124(user_last_actions)
125
[364]126Bugfix to avoid zero division by km_neutral (production_e)
127
[359]128Bugfix for extended NetCDF files: In order to avoid 'data mode' errors if
129updated attributes are larger than their original size, NF90_PUT_ATT is called
130in 'define mode' enclosed by NF90_REDEF and NF90_ENDDEF calls. This implies a
131possible performance loss; an alternative strategy would be to ensure equal
132attribute size in a job chain. (netcdf)
133
134Bugfix: correction of initial volume flow for non-flat topography (init_3d_model)
135Bugfix: zero initialization of arrays within buildings for 'cyclic_fill' (init_3d_model)
136
[355]137Bugfix: to_be_resorted => s_av for time-averaged scalars (data_output_2d, data_output_3d)
[335]138
[355]139Bugfix: error in formatting the output (message)
140
[333]141Bugfix: avoid that ngp_2dh_s_inner becomes zero (init_3_model)
[192]142
[288]143Typographical error: unit of wpt in dots_unit (modules)
144
[262]145Bugfix: error in check, if particles moved further than one subdomain length.
146This check must not be applied for newly released particles. (advec_particles)
147
[229]148Bugfix: several tail counters are initialized, particle_tail_coordinates is
149only written to file if its third index is > 0, arrays for tails are allocated
150with a minimum size of 10 tails if there is no tail initially (init_particles,
151advec_particles)
[232]152
153Bugfix: pressure included for profile output (check_parameters)
154
[239]155Bugfix: Type of count and count_rate changed to default INTEGER on NEC machines
156(cpu_log)
157
[253]158Bugfix: output if particle time series only if particle advection is switched
159on. (time_integration)
160
[336]161Bugfix: qsws was calculated in case of constant heatflux = .FALSE. (prandtl_fluxes)
162
163Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and z0) (data_output_2d)
164
[292]165Typographical errors (netcdf)
166
167If the inversion height calculated by the prerun is zero, inflow_damping_height
168must be explicitly specified (init_3d_model)
169
170Small bugfix concerning 3d 64bit netcdf output format (header)
171
[336]172Bugfix: dt_fixed removed from the restart file, because otherwise, no change
173from a fixed to a variable timestep would be possible in restart runs.
174(read_var_list, write_var_list)
[292]175
[348]176Bugfix: initial setting of time_coupling in coupled restart runs (time_integration)
177
[366]178advec_particles, check_parameters, cpu_log, data_output_2d, data_output_3d, header, init_3d_model, init_particles, modules, netcdf, prandtl_fluxes, production_e, read_var_list, time_integration, user_last_actions, write_var_list
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