source: palm/trunk/SOURCE/CURRENT_MODIFICATIONS @ 375

Last change on this file since 375 was 367, checked in by maronga, 15 years ago

adapted for machine lck

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1New:
2---
3
4Adapted for machine lck
5(mrun, mbuild, subjob)
6
7bc_lr/bc_ns  in most subroutines replaced by LOGICAL variables bc_lr_cyc,
8bc_ns_cyc for speed optimization
9(check_parameters, diffusion_u, diffusion_v, diffusion_w, modules)
10
11Additional timestep criterion in case of simulations with plant canopy (timestep)
12
13Check for illegal entries in section_xy|xz|yz that exceed nz+1|ny+1|nx+1
14(check_parameters)
15
16Clipping of dvrp output implemented. Default colourtable for particles
17implemented, particle attributes (color, dvrp_size) can be set with new
18parameters particle_color, particle_dvrpsize, color_interval,
19dvrpsize_interval (init_dvrp, data_output_dvrp, modules, user_data_output_dvrp).
20Slicer attributes (dvrp) are set with new routine set_slicer_attributes_dvrp
21and are controlled with existing parameters slicer_range_limits.
22(set_slicer_attributes_dvrp)
23
24Ocean atmosphere coupling allows to use independent precursor runs in order
25to account for different spin-up times. The time when coupling has to be
26started is given by new inipar parameter coupling_start_time. The precursor
27ocean run has to be started using new mrun option "-y" in order to add
28appendix "_O" to all output files.
29(check_for_restart, check_parameters, data_output_2d, data_output_3d,
30data_output_profiles, data_output_ptseries, data_output_spectra,
31data_output_tseries, header, init_coupling, modules, mrun,
32parin, read_var_list, surface_coupler, time_integration, write_var_list)
33
34Polygon reduction for topography and ground plate isosurface. Reduction level
35for buildings can be chosen with parameter cluster_size. (init_dvrp)
36
37External pressure gradient (check_parameters, header, init_3d_model, modules,
38parin, prognostic_equations, read_var_list, write_var_list)
39
40New topography case 'single_street_canyon' (header, init_grid, modules, parin,
41read_var_list, user_check_parameters, user_header, user_init_grid, write_var_list)
42
43Option to predefine a target bulk velocity for conserve_volume_flow
44(check_parameters, header, init_3d_model, modules, parin, read_var_list,
45write_var_list)
46
47Option for user defined 2D data output in xy cross sections at z=nzb+1
48(data_output_2d, user_data_output_2d)
49
50xy cross section output of surface heatfluxes (latent, sensible)
51(average_3d_data, check_parameters, data_output_2d, modules, read_3d_binary,
52sum_up_3d_data, write_3d_binary)
53
54
55average_3d_data, check_for_restart, check_parameters, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, init_coupling, init_dvrp, init_grid, init_3d_model, header, mbuild, modules, mrun, package_parin, parin, prognostic_equations, read_3d_binary, read_var_list, subjob, surface_coupler, timestep, time_integration, user_check_parameters, user_data_output_2d, user_data_output_dvrp, user_header, user_init_grid, write_3d_binary, write_var_list
56
57New: set_particle_attributes, set_slicer_attributes_dvrp
58
59Changed:
60-------
61For extended NetCDF files, the updated title attribute includes an update of
62time_average_text where appropriate. (netcdf)
63
64In case of restart runs without extension, initial profiles are not written
65to NetCDF-file anymore. (data_output_profiles, modules, read_var_list, write_var_list)
66
67Small change in formatting of the message handling routine concering the output in the
68job protocoll. (message)
69
70initializing_actions='read_data_for_recycling' renamed to 'cyclic_fill', now
71independent of turbulent_inflow (check_parameters, header, init_3d_model)
72
732 NetCDF error numbers changed. (data_output_3d)
74
75A Link to the website appendix_a.html is printed for further information
76about the possible errors. (message)
77
78Temperature gradient criterion for estimating the boundary layer height
79replaced by the gradient criterion of Sullivan et al. (1998). (flow_statistics)
80
81NetCDF unit attribute in timeseries output in case of statistic regions added
82(netcdf)
83
84Output of NetCDF messages with aid of message handling routine.
85(check_open, close_file, data_output_2d, data_output_3d,
86data_output_profiles, data_output_ptseries, data_output_spectra,
87data_output_tseries, netcdf, output_particles_netcdf)
88
89Output of messages replaced by message handling routine.
90(advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart,
91check_open, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp,
92data_output_profiles, data_output_spectra, fft_xy, flow_statistics, header,
93init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid,
94netcdf, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary,
95read_var_list, surface_coupler, temperton_fft, timestep, user_actions,
96user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy,
97user_parin, user_read_restart_data, user_spectra )
98
99Maximum number of tails is calculated from maximum number of particles and
100skip_particles_for_tail (init_particles)
101
102Value of vertical_particle_advection may differ for each particle group
103(advec_particles, header, modules)
104
105First constant in array den also defined as type double. (eqn_state_seawater)
106
107Parameter dvrp_psize moved from particles_par to dvrp_graphics_par. (package_parin)
108
109topography_grid_convention moved from userpar to inipar (check_parameters,
110header, parin, read_var_list, user_check_parameters, user_header,
111user_init_grid, user_parin, write_var_list)
112
113Default value of grid_matching changed to strict.
114
115Adjustments for runs on lcxt4 (necessary due to an software update on CRAY) and
116for coupled runs on ibmy (mrun, subjob)
117
118advec_particles, advec_s_bc, buoyancy, calc_spectra, check_for_restart, check_open, check_parameters, close_file, coriolis, cpu_log, data_output_2d, data_output_3d, data_output_dvrp, data_output_profiles, data_output_ptseries, data_output_spectra, data_output_tseries, eqn_state_seawater, fft_xy, flow_statistics, header, init_1d_model, init_3d_model, init_dvrp, init_grid, init_particles, init_pegrid, message, mrun, netcdf, output_particles_netcdf, package_parin, parin, plant_canopy_model, poisfft_hybrid, poismg, read_3d_binary, read_var_list, sort_particles, subjob, user_check_parameters, user_header, user_init_grid, user_parin, surface_coupler, temperton_fft, timestep, user_actions, user_data_output_dvrp, user_dvrp_coltab, user_init_grid, user_init_plant_canopy, user_parin, user_read_restart_data, user_spectra, write_var_list
119
120
121Errors:
122------
123Bugfix: Output on unit 14 only if requested by write_binary.
124(user_last_actions)
125
126Bugfix to avoid zero division by km_neutral (production_e)
127
128Bugfix for extended NetCDF files: In order to avoid 'data mode' errors if
129updated attributes are larger than their original size, NF90_PUT_ATT is called
130in 'define mode' enclosed by NF90_REDEF and NF90_ENDDEF calls. This implies a
131possible performance loss; an alternative strategy would be to ensure equal
132attribute size in a job chain. (netcdf)
133
134Bugfix: correction of initial volume flow for non-flat topography (init_3d_model)
135Bugfix: zero initialization of arrays within buildings for 'cyclic_fill' (init_3d_model)
136
137Bugfix: to_be_resorted => s_av for time-averaged scalars (data_output_2d, data_output_3d)
138
139Bugfix: error in formatting the output (message)
140
141Bugfix: avoid that ngp_2dh_s_inner becomes zero (init_3_model)
142
143Typographical error: unit of wpt in dots_unit (modules)
144
145Bugfix: error in check, if particles moved further than one subdomain length.
146This check must not be applied for newly released particles. (advec_particles)
147
148Bugfix: several tail counters are initialized, particle_tail_coordinates is
149only written to file if its third index is > 0, arrays for tails are allocated
150with a minimum size of 10 tails if there is no tail initially (init_particles,
151advec_particles)
152
153Bugfix: pressure included for profile output (check_parameters)
154
155Bugfix: Type of count and count_rate changed to default INTEGER on NEC machines
156(cpu_log)
157
158Bugfix: output if particle time series only if particle advection is switched
159on. (time_integration)
160
161Bugfix: qsws was calculated in case of constant heatflux = .FALSE. (prandtl_fluxes)
162
163Bugfix: averaging along z is not allowed for 2d quantities (e.g. u* and z0) (data_output_2d)
164
165Typographical errors (netcdf)
166
167If the inversion height calculated by the prerun is zero, inflow_damping_height
168must be explicitly specified (init_3d_model)
169
170Small bugfix concerning 3d 64bit netcdf output format (header)
171
172Bugfix: dt_fixed removed from the restart file, because otherwise, no change
173from a fixed to a variable timestep would be possible in restart runs.
174(read_var_list, write_var_list)
175
176Bugfix: initial setting of time_coupling in coupled restart runs (time_integration)
177
178advec_particles, check_parameters, cpu_log, data_output_2d, data_output_3d, header, init_3d_model, init_particles, modules, netcdf, prandtl_fluxes, production_e, read_var_list, time_integration, user_last_actions, write_var_list
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