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source: palm/trunk/SCRIPTS/subjob @ 710

Last change on this file since 710 was 696, checked in by raasch, 14 years ago
adjustments for openmp usage on ibmkisti (mrun, subjob); OpenMP-bugfixes: work_fftx removed from PRIVATE clauses in fftx_tr_xy and tr_yx_fftx (poisfft); Bugfix: Summation of Wicker-Skamarock scheme fluxes and variances for all threads (flow_statistics)
Property svn:keywords set to `Id Rev`
File size: 48.9 KB

Line
1	#!/bin/ksh
2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
3	# $Id: subjob 696 2011-03-18 07:03:49Z raasch $
4
5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
7	# Host zurueckgeschickt werden sollen
8
9
10	# letzte Aenderung:
11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
13	# 06/02/98 - Siggi - berte validiert
14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
15	# moeglich
16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
19	# allgemeine Anpassungen fuer ibm-Rechner
20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
21	# Ruecktransfer des Jobprotokolls fuer diese
22	# Maschine abgeschaltet
23	# 31/10/02 - Siggi - berni validiert
24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
25	# 08/11/02 - Siggi - quanero validiert
26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
27	# 23/01/03 - Siggi - hostname nobel changed to nobela
28	# 06/02/03 - Siggi - gregale validated
29	# 12/02/03 - Siggi - orkan and maestro validated
30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
31	# 12/03/03 - Siggi - nec at DKRZ validated
32	# 13/03/03 - Siggi - new nqs resource variable Memory
33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
34	# node
35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
37	# cxxl added to ibmh
38	# 29/08/03 - Siggi - changes in job queues and communication system on
39	# ibms
40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
41	# 30/10/03 - Siggi - nech is not supported any more
42	# 10/11/03 - Siggi - nech2 renamed to nech
43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
45	# 31/03/04 - Siggi - new option -N for node usage
46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
47	# due to error in ssh installation (otherwise a prompt
48	# for the password appears)
49	# 23/07/04 - Siggi - changes due to the new berni configuration
50	# (federation switch)
51	# 01/09/04 - Gerald new job-classes on hanni
52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
54	# 03/12/04 - Siggi - notification on ibm switched of in case of
55	# delete_dayfile = true, node usage in cdev set to
56	# shared
57	# 16/02/05 - Gerald hababai validated
58	# 29/03/05 - Micha - new job class channi on hanni
59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
60	# on ibms
61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
62	# p_normal
63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
65	# "sn_all", new job class cexp
66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
68	# hurricane (with -X0)
69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
70	# added
71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
72	# 09/02/06 - Siggi - ibmy admitted
73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
74	# 13/04/06 - Siggi - ostria admitted
75	# 18/04/06 - Siggi - new option -O for OpenMP usage
76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
80	# 28/11/06 - Siggi - levanto admitted
81	# 13/02/07 - Siggi - hpmuk releated code removed
82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
84	# 27/07/07 - Siggi - autan admitted
85	# 03/08/07 - Marcus- lcfimm admitted
86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
88	# suggestions
89	# 19/10/07 - Marcus- add new optional argument -g group_number
90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
91	# 30/10/07 - Marcus- further adjustments for queues on lctit
92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
93	# Science)
94	# 14/07/08 - Siggi - adjustments for lcsgih
95	# 23/09/08 - Gerald- paesano admitted
96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
104	# now run on the data nodes (feature=data)
105	# 25/08/09 - BjornM- adapted for lck
106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
108	# set in the config file by the user
109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
110	# adding special1q
111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
112	# 16/10/09 - Carolin-adding permq
113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
114	# 03/02/10 - Siggi - bug in serial jobs removed
115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
116	# notification)
117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
118	# module_calls
119	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
120	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
121	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
122	# lcxt4
123	# 08/12/10 - Siggi - initialization of the module command changed for
124	# SGI-ICE/lcsgi
125	# adjustments for Kyushu Univ. (lcrte, ibmku)
126	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
127	# institute of technology (lctit)
128	# 02/02/11 - Siggi - further asjustments for Tsubame concerning openMP
129	# 06/03/11 - Siggi - adjustments for ibmkisti
130	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
131
132
133
134
135	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
136	delete_dayfile=false
137	email_notification=none
138	group_number=none
139	locat=normal
140	no_default_queue=none
141	no_submit=false
142	job_catalog="~/job_queue"
143	job_name=none
144	local_user=$LOGNAME
145	node_usage=shared
146	numprocs=0
147	punkte="..........................................................."
148	submcom=qsub
149	queue=default
150	remote_host=none
151	remote_user=""
152	verify=true
153
154	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
155	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
156	typeset -L20 spalte1
157	typeset -R40 spalte2
158	typeset -L60 spalte3
159
160
161
162	# FEHLERBEHANDLUNG
163	# BEI EXIT:
164	trap 'if [[ $locat != normal ]]
165	then
166	case $locat in
167	(option) printf "\n --> available optios can be displayed"
168	printf " by typing:"
169	printf "\n \"subjob ?\" \n";;
170	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
171	(*) printf "\n +++ unknown error"
172	printf "\n please inform S. Raasch!\n"
173	esac
174	[[ -f $job_to_send ]] && rm $job_to_send
175	printf "\n\n+++ SUBJOB killed \n\n"
176	fi' exit
177
178
179	# BEI TERMINAL-BREAK:
180	trap '[[ -f $job_to_send ]] && rm $job_to_send
181	printf "\n\n+++ SUBJOB killed \n\n"
182	exit
183	' 2
184
185
186
187
188	# LOKALEN HOSTNAMEN FESTSTELLEN
189	local_host=$(hostname)
190
191
192
193	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
194	# UEBERHAUPT ZULAESSIG IST
195	case $local_host in
196	(atmos) local_addres=172.20.25.35; local_host=lcide;;
197	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
198	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
199	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
200	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
201	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
202	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
203	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
204	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
205	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
206	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
207	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
208	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
209	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
210	(cs*) local_addres=136.172.44.131; local_host=nech;;
211	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
212	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
213	(node*) local_addres=165.132.26.61 local_host=lck;;
214	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
215	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
216	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
217	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
218	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
219	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
220	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
221	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
222	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
223	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
224	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
225	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
226	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
227	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
228	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
229	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
230	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
231	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
232	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
233	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
234	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
235	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
236	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
237	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
238	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
239	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
240	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
241	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
242	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
243	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
244	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
245	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
246	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
247	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
248	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
249	(*) printf "\n +++ \"$local_host\" unknown";
250	printf "\n please inform S. Raasch!";
251	locat=parameter; exit;;
252	esac
253
254
255
256	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
257	remote_host=$local_host
258
259
260
261
262	# PROZEDUROPTIONEN EINLESEN
263	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
264	do
265	case $option in
266	(c) job_catalog=$OPTARG;;
267	(d) delete_dayfile=true;;
268	(D) no_submit=true;;
269	(e) email_notification=$OPTARG;;
270	(g) group_number=$OPTARG;;
271	(h) remote_host=$OPTARG;;
272	(m) memory=$OPTARG;;
273	(n) job_name=$OPTARG;;
274	(N) node_usage=$OPTARG;;
275	(O) threads_per_task=$OPTARG;;
276	(q) no_default_queue=$OPTARG;;
277	(t) cputime=$OPTARG;;
278	(T) tasks_per_node=$OPTARG;;
279	(u) remote_user=$OPTARG;;
280	(v) verify=false;;
281	(X) numprocs=$OPTARG;;
282	(\?) printf "\n +++ Option $OPTARG unknown \n";
283	locat=option; exit;;
284	esac
285	done
286
287
288	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
289	shift OPTIND-1; file_to_send=$1
290
291
292	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
293	if [ "$1" = "?" ]
294	then
295	(printf "\n *** subjob can be called as follows:\n"
296	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
297	printf "\n Description of available options:\n"
298	printf "\n Option Description Default-Value"
299	printf "\n -c job-input- and output-catalog ~/job_queue"
300	printf "\n -d no job-protocol will be created ---"
301	printf "\n -D only the job-file will be created ---"
302	printf "\n -h execution host, available hosts: $remote_host"
303	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
304	printf "\n lctit, nech, necriam, unics"
305	printf "\n -m memory demand per process in MByte ---"
306	printf "\n -n jobname <jobdatei>"
307	printf "\n -O threads per task (for OpenMP usage) 1"
308	printf "\n -q job-queue to be used default"
309	printf "\n -t allowed cpu-time in seconds ---"
310	printf "\n -T tasks per node (on parallel hosts) ---"
311	printf "\n -u username on execution host from .netrc"
312	printf "\n -v no prompt for confirmation ---"
313	printf "\n -X # of processors (on parallel hosts) 1"
314	printf "\n "
315	printf "\n The only possible positional parameter is <jobfile>:"
316	printf "\n The complete NQS-job must be provided here."
317	printf "\n <jobfile>=? creates this outline\n\n") \| more
318	exit
319	fi
320
321
322
323	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
324	if [[ "$file_to_send" = "" ]]
325	then
326	printf "\n +++ job-file missing"
327	locat=parameter; exit
328	else
329	if [[ -f $file_to_send ]]
330	then
331	true
332	else
333	printf "\n +++ job-file: "
334	printf "\n $file_to_send"
335	printf "\n does not exist"
336	locat=parameter; exit
337	fi
338	fi
339
340
341
342	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
343	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
344	if [[ $job_name = none ]]
345	then
346	job_name=$file_to_send
347	fi
348	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
349	then
350	printf "\n +++ job-file name: "
351	printf "\n $job_name"
352	printf "\n must not contain \"/\"-characters"
353	locat=parameter; exit
354	fi
355
356
357
358
359	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
360	# ODER WENN HOST NICHT ANGEGEBEN WURDE
361	if [[ $remote_host = none ]]
362	then
363	printf "\n +++ host missing"
364	locat=option; exit
365	else
366	case $remote_host in
367	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
368	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
369	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
370	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
371	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
372	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
373	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
374	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
375	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
376	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
377	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
378	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
379	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.4.9-snap.201005191035/bin/qsub;;
380	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
381	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
382	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
383	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
384	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
385	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
386	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
387	locat=parameter; exit;;
388	esac
389	fi
390
391
392	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
393	if [[ $no_default_queue != none ]]
394	then
395	error=false
396	ndq=$no_default_queue
397	case $remote_host in
398	(ibm) case $ndq in
399	(p690_express\|p690_standard\|p690_long) error=false;;
400	(*) error=true;;
401	esac;;
402	(ibmh) case $ndq in
403	(no_class) error=false;;
404	(*) error=true;;
405	esac;;
406	(ibmkisti) case $ndq in
407	(class.32plus\|class.1-2\|class.2-32) error=false;;
408	(*) error=true;;
409	esac;;
410	(ibmku) case $ndq in
411	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
412	(*) error=true;;
413	esac;;
414	(ibms) case $ndq in
415	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
416	(*) error=true;;
417	esac;;
418	(ibmy) case $ndq in
419	(parallel) error=false;;
420	(*) error=true;;
421	esac;;
422	(lckyoto) case $ndq in
423	(eh\|ph) error=false;;
424	(*) error=true;;
425	esac;;
426	(lcsgib\|lcsgih) case $ndq in
427	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
428	(*) error=true;;
429	esac;;
430	(lctit) case $ndq in
431	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
432	(*) error=true;;
433	esac;;
434	(t3eb) case $ndq in
435	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
436	(*) error=true;;
437	esac;;
438	(necriam) case $ndq in
439	(SP\|SS\|P6) error=false;;
440	(*) error=true;;
441	esac;;
442	(t3eh) case $ndq in
443	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
444	(*) error=true;;
445	esac;;
446	(t3ej2\|t3ej5) case $ndq in
447	(low\|normal\|high) error=false;;
448	(*) error=true;;
449	esac;;
450	(t3es) case $ndq in
451	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
452	(*) error=true;;
453	esac;;
454	(unics) case $ndq in
455	(unics\|ht) error=false;;
456	(*) error=true;;
457	esac;;
458	esac
459	if [[ $error = true ]]
460	then
461	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
462	locat=parameter; exit
463	else
464	queue=$no_default_queue
465	fi
466	fi
467
468
469
470	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
471	# AUFTEILEN
472	done=false
473	while [[ $done = false ]]
474	do
475	if (( $cputime <= 0 ))
476	then
477	printf "\n +++ wrong cpu-time or cpu-time missing"
478	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
479	printf "\n >>> "
480	read cputime 1>/dev/null 2>&1
481	else
482	done=true
483	fi
484	done
485	if [[ $remote_host = nech ]]
486	then
487	if (( tasks_per_node != 0 ))
488	then
489	(( cputime = cputime * tasks_per_node ))
490	elif [[ $numprocs != 0 ]]
491	then
492	(( cputime = cputime * numprocs ))
493	fi
494	fi
495	(( stunden = cputime / 3600 ))
496	(( resttime = cputime - stunden * 3600 ))
497	(( minuten = resttime / 60 ))
498	(( sekunden = resttime - minuten * 60 ))
499	timestring=${stunden}:${minuten}:${sekunden}
500
501
502
503	# PRUEFEN DER KERNSPEICHERANFORDERUNG
504	done=false
505	while [[ $done = false ]]
506	do
507	if (( memory <= 0 ))
508	then
509	printf "\n +++ wrong memory demand or memory demand missing"
510	printf "\n >>> Please type memory in MByte per process as INTEGER:"
511	printf "\n >>> "
512	read memory 1>/dev/null 2>&1
513	else
514	done=true
515	fi
516	done
517
518	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
519	then
520	if (( tasks_per_node != 0 ))
521	then
522	(( Memory = memory * tasks_per_node / 1000 ))
523	elif [[ $numprocs != 0 ]]
524	then
525	(( Memory = memory * numprocs / 1000 ))
526	else
527	(( Memory = memory / 1000 ))
528	fi
529	elif [[ $remote_host = lctit ]]
530	then
531	(( Memory = memory * tasks_per_node / 1000 ))
532	fi
533
534
535	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
536	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
537	then
538	(( memory = memory * threads_per_task ))
539	fi
540
541
542	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
543	if (( tasks_per_node != 0 ))
544	then
545	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
546	fi
547
548	# Calculate number of processes per node
549	(( processes_per_node = tasks_per_node * threads_per_task ))
550
551	# Calculate number of MPI tasks
552	(( mpi_tasks = numprocs / threads_per_task ))
553
554
555	# HEADER-AUSGABE
556	if [[ $verify = true ]]
557	then
558	printf "\n\n"
559	printf "#--------------------------------------------------------------# \n"
560	spalte1=SUBJOB;spalte2=$(date)
561	printf "\| $spalte1$spalte2 \| \n"
562	printf "\| \| \n"
563	printf "\| values of parameters/options: \| \n"
564	spalte1=local_host$punkte; spalte2=$punkte$local_host
565	printf "\| $spalte1$spalte2 \| \n"
566	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
567	printf "\| $spalte1$spalte2 \| \n"
568	spalte1=queue$punkte; spalte2=$punkte$queue
569	printf "\| $spalte1$spalte2 \| \n"
570	spalte1=memory$punkte; spalte2="$punkte$memory mb"
571	printf "\| $spalte1$spalte2 \| \n"
572	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
573	printf "\| $spalte1$spalte2 \| \n"
574	spalte1=job_name$punkte; spalte2="$punkte$job_name"
575	printf "\| $spalte1$spalte2 \| \n"
576	printf "#--------------------------------------------------------------# \n\n"
577
578
579	# KONTROLLABFRAGE, OB ALLES O.K.
580	antwort="dummy"
581	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
582	do
583	read antwort?" >>> continue (y/n) ? "
584	done
585	if [[ $antwort = n \|\| $antwort = N ]]
586	then
587	locat=verify; exit
588	fi
589	printf "\n"
590	fi
591
592
593
594	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
595	kennung=$RANDOM
596	job_on_remhost=${job_name}_${kennung}_$local_host
597	job_to_send=job_to_send_$kennung
598	if [[ $delete_dayfile = false ]]
599	then
600	remote_dayfile=${local_host}_${job_name}_result_$kennung
601	local_dayfile=${remote_host}_${job_name}
602	else
603	remote_dayfile=/dev/null
604	fi
605
606
607
608	# Generate the batch job scripts (qsub/msub/LoadLeveler)
609	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
610	then
611
612	# General LoadLeveler settings
613	execute_in_shell="#!/bin/ksh"
614	use_shell="# @ shell = /bin/ksh"
615	consumable_memory="ConsumableMemory($memory mb)"
616	class="# @ class = $queue"
617	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
618	network_to_use="# @ network.mpi = sn_all,shared,us"
619	data_limit="# @ data_limit = 1.76gb"
620	image_size="# @ image_size = 50"
621	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
622
623	if [[ $email_notification = none ]]
624	then
625	notify_user=""
626	else
627	notify_user="# @ notify_user = $email_notification"
628	if [[ $delete_dayfile = true ]]
629	then
630	notification='# @ notification = never'
631	fi
632	fi
633
634	if [[ $remote_host = ibmh ]]
635	then
636	data_limit=""
637	network_to_use=""
638	class=""
639	environment=""
640	elif [[ $remote_host = ibmkisti ]]
641	then
642	network_to_use="# @ network.MPI = sn_all,shared,US"
643	wall_clock_limit="# @ wall_clock_limit = $timestring"
644	if [[ $threads_per_task = 1 ]]
645	then
646	rset="# @ rset = RSET_MCM_AFFINITY"
647	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
648	fi
649	environment=""
650	use_shell=""
651	data_limit=""
652	image_size=""
653	elif [[ $remote_host = ibmku ]]
654	then
655	execute_in_shell="#!/usr/bin/ksh"
656	use_shell="# @ shell = /usr/bin/ksh"
657	consumable_memory=""
658	environment=""
659	network_to_use="# @ network.mpi = sn_all,shared,us"
660	data_limit=""
661	image_size=""
662	elif [[ $remote_host = ibms ]]
663	then
664	network_to_use="# @ network.mpi = csss,shared,us"
665	elif [[ $remote_host = ibmy ]]
666	then
667	consumable_memory=""
668	network_to_use=""
669	fi
670
671	cat > $job_to_send << %%END%%
672	$execute_in_shell
673	$use_shell
674
675	# @ job_type = parallel
676	# @ job_name = $job_name
677	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
678	# @ output = $remote_dayfile
679	# @ error = $remote_dayfile
680	$wall_clock_limit
681	$image_size
682	$class
683	$environment
684	$network_to_use
685	$data_limit
686	$rset
687	$mcm_affinity_options
688	$notification
689	$notify_user
690
691	%%END%%
692
693	if (( nodes > 0 ))
694	then
695
696	if [[ $remote_host != ibmkisti ]]
697	then
698
699	cat >> $job_to_send << %%END%%
700	# @ node = $nodes
701	# @ tasks_per_node = $processes_per_node
702	# @ node_usage = $node_usage
703	# @ queue
704
705	%%END%%
706
707	else
708
709	cat >> $job_to_send << %%END%%
710	# @ total_tasks = $mpi_tasks
711	# @ blocking = unlimited
712	# @ queue
713
714	%%END%%
715
716	fi
717
718	else
719
720	if [[ $remote_host != ibmy ]]
721	then
722
723	cat >> $job_to_send << %%END%%
724	# @ blocking = unlimited
725	# @ total_tasks = $numprocs
726	# @ node_usage = $node_usage
727	# @ queue
728
729	%%END%%
730
731	else
732
733	cat >> $job_to_send << %%END%%
734	# @ node = 1
735	# @ total_tasks = $numprocs
736	# @ queue
737
738	%%END%%
739
740	fi
741
742	fi
743
744	# workaround because of silly job filter on ibmkisti
745	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
746	then
747	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
748	fi
749
750	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
751	then
752
753	cat > $job_to_send << %%END%%
754	#!/bin/ksh
755
756	# @ job_type = serial
757	# @ node_usage = $node_usage
758	# @ job_name = palm
759	# @ wall_clock_limit = ${timestring},$timestring
760	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
761	# @ output = $remote_dayfile
762	# @ error = $remote_dayfile
763	$class
764	$notification
765
766	# @ queue
767
768	%%END%%
769
770	elif [[ $remote_host = lcfimm ]]
771	then
772
773	if [[ $numprocs != 0 ]]
774	then
775	cat > $job_to_send << %%END%%
776	#!/bin/ksh
777	#PBS -N $job_name
778	#PBS -A $project_account
779	#PBS -l walltime=$timestring
780	#PBS -l nodes=${nodes}:ppn=$processes_per_node
781	#PBS -l pmem=${memory}mb
782	#PBS -m abe
783	#PBS -o $remote_dayfile
784	#PBS -j oe
785	mpd &
786
787	%%END%%
788
789	else
790	cat > $job_to_send << %%END%%
791	#!/bin/ksh
792	#PBS -N $job_name
793	#PBS -A $project_account
794	#PBS -l walltime=$timestring
795	#PBS -l ncpus=1
796	#PBS -l pmem=${memory}mb
797	#PBS -m abe
798	#PBS -o $remote_dayfile
799	#PBS -j oe
800
801	%%END%%
802
803	fi
804
805	elif [[ $remote_host = lck ]]
806	then
807
808	if [[ $numprocs != 0 ]]
809	then
810	cat > $job_to_send << %%END%%
811	#!/bin/ksh
812	#PBS -N $job_name
813	#PBS -l walltime=$timestring
814	#PBS -l ncpus=$numprocs
815	#PBS -l pmem=${memory}mb
816	#PBS -o $remote_dayfile
817	#PBS -j oe
818
819	mpd &
820
821	%%END%%
822
823	else
824	cat > $job_to_send << %%END%%
825	#!/bin/ksh
826	#PBS -N $job_name
827	#PBS -l walltime=$timestring
828	#PBS -l ncpus=1
829	#PBS -l pmem=${memory}mb
830	#PBS -o $remote_dayfile
831	#PBS -j oe
832
833	%%END%%
834
835	fi
836
837	elif [[ $remote_host = lcyon ]]
838	then
839
840	if [[ $numprocs != 0 ]]
841	then
842	cat > $job_to_send << %%END%%
843	#!/bin/ksh
844	#PBS -N $job_name
845	#PBS -l walltime=$timestring
846	#PBS -l ncpus=$numprocs
847	#PBS -l pmem=${memory}mb
848	#PBS -o $remote_dayfile
849	#PBS -j oe
850
851	%%END%%
852
853	else
854	cat > $job_to_send << %%END%%
855	#!/bin/ksh
856	#PBS -N $job_name
857	#PBS -l walltime=$timestring
858	#PBS -l ncpus=1
859	#PBS -l pmem=${memory}mb
860	#PBS -o $remote_dayfile
861	#PBS -j oe
862
863	%%END%%
864
865	fi
866
867	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
868	then
869
870	if [[ "$sgi_feature" != "" ]]
871	then
872	feature_directive="#PBS -l feature=$sgi_feature"
873	else
874	feature_directive=""
875	fi
876
877	if [[ $queue = dataq \|\| $queue = permq ]]
878	then
879	feature_directive="#PBS -l feature=data"
880	fi
881
882	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
883	then
884	queue_directive="#PBS -q $queue"
885	else
886	queue_directive=""
887	fi
888
889	if [[ $email_notification = none ]]
890	then
891	email_directive=""
892	else
893	email_directive="#PBS -M $email_notification"
894	fi
895
896	if [[ $numprocs != 0 ]]
897	then
898	cat > $job_to_send << %%END%%
899	#!/bin/bash
900	#PBS -N $job_name
901	#PBS -l walltime=$timestring
902	#PBS -l nodes=$nodes:ppn=${processes_per_node}
903	#PBS -l naccesspolicy=$node_usage
904	#PBS -o $remote_dayfile
905	#PBS -j oe
906	$feature_directive
907	$queue_directive
908	$email_directive
909
910	eval \`/sw/swdist/bin/modulesinit\`
911	#. /usr/share/modules/init/bash
912	$module_calls
913
914	echo ld_library_path=\$LD_LIBRARY_PATH
915
916	%%END%%
917
918	else
919	cat > $job_to_send << %%END%%
920	#PBS -S /bin/bash
921	#PBS -N $job_name
922	#PBS -l walltime=$timestring
923	#PBS -l ncpus=1
924	#PBS -o $remote_dayfile
925	#PBS -j oe
926	$queue_directive
927	$email_directive
928
929	eval \`/sw/swdist/bin/modulesinit\`
930	#. /usr/share/modules/init/bash
931	$module_calls
932
933	%%END%%
934
935	fi
936
937	elif [[ $remote_host = lcxt4 ]]
938	then
939
940	if [[ $numprocs != 0 ]]
941	then
942	cat > $job_to_send << %%END%%
943	#!/bin/ksh
944	#PBS -S /bin/ksh
945	#PBS -N $job_name
946	#PBS -A $project_account
947	#PBS -j oe
948	#PBS -l walltime=$timestring
949	#PBS -l mppwidth=${numprocs}
950	#PBS -l mppnppn=${processes_per_node}
951	#PBS -m abe
952	#PBS -o $remote_dayfile
953	$email_directive
954
955	. /opt/modules/default/init/ksh
956	$module_calls
957
958	%%END%%
959
960	else
961	cat > $job_to_send << %%END%%
962	#!/bin/ksh
963	#PBS -S /bin/ksh
964	#PBS -N $job_name
965	#PBS -A $project_account
966	#PBS -j oe
967	#PBS -l walltime=$timestring
968	#PBS -l ncpus=1
969	#PBS -l pmem=${memory}mb
970	#PBS -m abe
971	$email_directive
972	#PBS -o $remote_dayfile
973
974	. /opt/modules/default/init/ksh
975	$module_calls
976
977	%%END%%
978
979	fi
980
981	elif [[ $remote_host = lckyoto ]]
982	then
983
984	cat > $job_to_send << %%END%%
985	#!/bin/ksh
986	# @\$-o $remote_dayfile
987	# @\$-eo -oi
988	# @\$-lP 16
989	# @\$-lp 1
990	# @\$-lm 28gb -llm unlimited -ls unlimited
991	# @\$-q $queue
992	# @\$-Pvn abs_pack
993	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
994	#. /thin/local/etc/setprofile/intel-11.0.sh
995	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
996	. ~/.myprofile
997	#. /home2/t/t51254/palm/current_version/myprofile
998	#. /thin/apps/pgi/mpi.sh
999	#
1000	env
1001	#
1002	set -x
1003
1004	%%END%%
1005
1006	elif [[ $remote_host = lcxt5m ]]
1007	then
1008
1009	if [[ $numprocs != 0 ]]
1010	then
1011	cat > $job_to_send << %%END%%
1012	#!/bin/ksh
1013	#PBS -S /bin/ksh
1014	#PBS -N $job_name
1015	#PBS -j oe
1016	#PBS -l walltime=$timestring
1017	#PBS -l mppwidth=${numprocs}
1018	#PBS -l mppnppn=${processes_per_node}
1019	#PBS -m abe
1020	#PBS -o $remote_dayfile
1021
1022	. /opt/modules/default/init/ksh
1023	$module_calls
1024
1025	%%END%%
1026
1027	else
1028	cat > $job_to_send << %%END%%
1029	#!/bin/ksh
1030	#PBS -S /bin/ksh
1031	#PBS -N $job_name
1032	#PBS -j oe
1033	#PBS -l walltime=$timestring
1034	#PBS -l ncpus=1
1035	#PBS -l pmem=${memory}mb
1036	#PBS -m abe
1037	#PBS -o $remote_dayfile
1038
1039	. /opt/modules/default/init/ksh
1040	$module_calls
1041
1042	%%END%%
1043
1044	fi
1045
1046	elif [[ $remote_host = nech ]]
1047	then
1048
1049	if (( nodes > 1 ))
1050	then
1051	cat > $job_to_send << %%END%%
1052	#!/bin/ksh
1053	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1054	#PBS -l ${qsubmem}=${Memory}gb
1055	#PBS -b $nodes
1056	#PBS -o $remote_dayfile
1057	#PBS -N palm
1058	#PBS -j o
1059	#PBS -T mpisx
1060
1061	%%END%%
1062
1063	elif [[ $numprocs != 0 ]]
1064	then
1065	cat > $job_to_send << %%END%%
1066	#!/bin/ksh
1067	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1068	#PBS -l ${qsubmem}=${Memory}gb
1069	#PBS -o $remote_dayfile
1070	#PBS -N palm
1071	#PBS -j o
1072
1073	%%END%%
1074
1075	else
1076	cat > $job_to_send << %%END%%
1077	#!/bin/ksh
1078	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1079	#PBS -o $remote_dayfile
1080	#PBS -j o
1081
1082	%%END%%
1083
1084	fi
1085
1086	elif [[ $remote_host = necriam ]]
1087	then
1088
1089	if (( nodes > 1 ))
1090	then
1091	cat > $job_to_send << %%END%%
1092	#!/bin/ksh
1093	#PBS -b $nodes
1094	#PBS -o $remote_dayfile
1095	#PBS -N $job_name
1096	#PBS -j o
1097	#PBS -v MPIPROGINV=YES
1098
1099	%%END%%
1100
1101	elif [[ $numprocs != 0 ]]
1102	then
1103	cat > $job_to_send << %%END%%
1104	#!/bin/ksh
1105	#PBS -q ${queue}
1106	#PBS -o $remote_dayfile
1107	#PBS -N $job_name
1108	#PBS -j o
1109	#PBS -v MPIPROGINV=YES
1110
1111	%%END%%
1112
1113	else
1114	cat > $job_to_send << %%END%%
1115	#!/bin/ksh
1116	#PBS -o $remote_dayfile
1117	#PBS -j o
1118
1119	%%END%%
1120
1121	fi
1122
1123	elif [[ $remote_host = lctit ]]
1124	then
1125	cat > $job_to_send << %%END%%
1126	#!/bin/ksh
1127
1128	$module_calls
1129
1130	%%END%%
1131
1132	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1133	if [[ $tasks_per_node != $processes_per_node ]]
1134	then
1135	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1136	else
1137	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1138	fi
1139
1140	else
1141
1142	cat > $job_to_send << %%END%%
1143	# @\$-q ${queue}
1144	# @\$-l${qsubtime} $timestring
1145	# @\$-l${qsubmem} ${memory}mb
1146	# @\$-o $remote_dayfile
1147	# @\$-eo
1148
1149	%%END%%
1150
1151	fi
1152
1153
1154	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1155	# BEI EXIT VERANLASSEN
1156	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1157	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1158	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1159	then
1160	echo "set +vx" >> $job_to_send
1161	echo "trap '" >> $job_to_send
1162	echo "set +vx" >> $job_to_send
1163	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec ]]
1164	then
1165	if [[ $remote_host = ibmh ]]
1166	then
1167	return_queue=c1
1168	elif [[ $remote_host = ibmkisti ]]
1169	then
1170	return_queue=class.1-2
1171	elif [[ $remote_host = ibmku ]]
1172	then
1173	return_queue=sdbg2
1174	elif [[ $remote_host = ibms ]]
1175	then
1176	return_queue=p_normal
1177	elif [[ $remote_host = ibmy ]]
1178	then
1179	return_queue=serial
1180	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1181	then
1182	return_queue=serialq
1183	elif [[ $remote_host = necriam ]]
1184	then
1185	return_queue=SP
1186	else
1187	return_queue=unknown
1188	fi
1189
1190	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1191	then
1192
1193	if [[ $remote_host = ibmku ]]
1194	then
1195	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1196	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1197	else
1198	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1199	fi
1200	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1201	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1202	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1203	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1204	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1205	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1206	if [[ $host != "ibmh" ]]
1207	then
1208	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1209	fi
1210	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1211	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1212
1213	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1214	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1215
1216	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1217	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1218	if [[ $remote_host = ibmku ]]
1219	then
1220	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1221	fi
1222	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1223
1224	elif [[ $remote_host = nech ]]
1225	then
1226	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1227	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1228	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1229	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1230	echo "#PBS -j o" >> $job_to_send
1231	echo " " >> $job_to_send
1232	echo "set -x" >> $job_to_send
1233	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1234	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1235	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1236	echo "%%END%%" >> $job_to_send
1237
1238	elif [[ $remote_host = necriam ]]
1239	then
1240	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1241	echo "#PBS -q $return_queue" >> $job_to_send
1242	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1243	echo "#PBS -j o" >> $job_to_send
1244	echo " " >> $job_to_send
1245	echo "set -x" >> $job_to_send
1246	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1247	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1248	echo "%%END%%" >> $job_to_send
1249
1250	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1251	then
1252	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1253	echo "#!/bin/bash" >> $job_to_send
1254	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1255	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1256	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1257	echo "#PBS -l feature=data" >> $job_to_send
1258	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1259	echo "#PBS -j oe" >> $job_to_send
1260	echo " " >> $job_to_send
1261	echo ". /usr/share/modules/init/bash" >> $job_to_send
1262	echo "set -x" >> $job_to_send
1263	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1264	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1265	echo "%%END%%" >> $job_to_send
1266
1267	else
1268
1269	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1270	echo "# @\\\$-q $return_queue" >> $job_to_send
1271	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1272	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1273	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1274	then
1275	echo "# @\$-l mpp_p=0" >> $job_to_send
1276	fi
1277	echo '# @\$-lF 10mb' >> $job_to_send
1278	# echo '# @\$-o /dev/null' >> $job_to_send
1279	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1280	echo '# @\\\$-eo' >> $job_to_send
1281	echo " " >> $job_to_send
1282	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1283	then
1284	echo "set +vx" >> $job_to_send
1285	echo ". .profile" >> $job_to_send
1286	fi
1287	echo "set -x" >> $job_to_send
1288	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1289	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1290	echo "%%END%%" >> $job_to_send
1291	fi
1292
1293	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1294	then
1295	echo "llsubmit scpjob.$kennung" >> $job_to_send
1296	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1297	then
1298	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1299	echo "msub scpjob.$kennung" >> $job_to_send
1300	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1301	then
1302	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1303	elif [[ $remote_host = t3es ]]
1304	then
1305	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1306	else
1307	echo "qsub scpjob.$kennung" >> $job_to_send
1308	fi
1309	if [[ $remote_host != ibmku ]]
1310	then
1311	echo "rm scpjob.$kennung" >> $job_to_send
1312	fi
1313	if [[ $remote_host = nech ]]
1314	then
1315	echo "cd -" >> $job_to_send
1316	fi
1317	else
1318	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1319	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1320	fi
1321	echo "set -x" >> $job_to_send
1322	echo " ' exit" >> $job_to_send
1323	echo "set -x" >> $job_to_send
1324	fi
1325
1326
1327
1328	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1329	cat $file_to_send >> $job_to_send
1330
1331	if [[ $remote_host = ibm ]]
1332	then
1333	echo " " >> $job_to_send
1334	echo "exit" >> $job_to_send
1335	fi
1336
1337	# remove job file
1338	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
1339	then
1340	echo " " >> $job_to_send
1341	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1342	fi
1343
1344
1345
1346	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1347	if [[ -z $remote_user ]]
1348	then
1349	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1350	then
1351	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1352	fi
1353	fi
1354
1355
1356
1357	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1358	if [[ $no_submit = false ]]
1359	then
1360	if [[ $remote_host != $local_host ]]
1361	then
1362	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1363	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1364	then
1365	job_catalog_save=$job_catalog
1366	job_catalog=job_queue
1367	elif [[ $remote_host = nech ]]
1368	then
1369	job_catalog_save=$job_catalog
1370	job_catalog=/hpf/b/${remote_user}/job_queue
1371	fi
1372	if [[ $local_host = decalpha ]]
1373	then
1374	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
1375	# PASSWORT AB
1376	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1377	elif [[ $remote_host = nech ]]
1378	then
1379	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1380	# TRANSFERIERT WERDEN
1381	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1382	else
1383	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1384	fi
1385	if [[ $? = 1 ]]
1386	then
1387	locat=scp; exit
1388	fi
1389	if [[ $remote_host = ibms ]]
1390	then
1391	job_catalog=$job_catalog_save
1392	fi
1393	[[ $verify = true ]] && printf "\n >>> finished\n"
1394	else
1395	eval job_catalog=$job_catalog
1396	cp $job_to_send ${job_catalog}/$job_on_remhost
1397	fi
1398
1399
1400
1401	# NQS- BZW. LOADLEVELER-JOB STARTEN
1402	if [[ $remote_host != $local_host ]]
1403	then
1404	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1405
1406	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1407	then
1408	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1409	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1410	elif [[ $remote_host = ibmku ]]
1411	then
1412	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1413	else
1414	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1415	fi
1416
1417	[[ $verify = true ]] && printf " >>> o.k.\n"
1418	else
1419	cd $job_catalog
1420	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1421	then
1422	eval $submcom $job_on_remhost
1423	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck \|\| $localhost = lcyon ]]
1424	then
1425	chmod u+x $job_on_remhost
1426	echo "$submcom $job_on_remhost"
1427	eval $submcom $job_on_remhost
1428	elif [[ $local_host = nech ]]
1429	then
1430	if [[ $queue = default ]]
1431	then
1432	eval $submcom $job_on_remhost
1433	else
1434	eval $submcom -q $queue $job_on_remhost
1435	fi
1436	else
1437	qsub $job_on_remhost
1438	fi
1439
1440	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1441	# only at the end of the job.
1442	if [[ $local_host != lctit && $local_host != ibmku ]]
1443	then
1444	rm $job_on_remhost
1445	fi
1446	cd - > /dev/null
1447	fi
1448	fi
1449
1450
1451
1452	# ABSCHLUSSARBEITEN
1453
1454	if [[ $no_submit = false ]]
1455	then
1456	rm $job_to_send
1457	fi
1458	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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