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subjob @ 693

Last change on this file since 693 was 693, checked in by raasch, 14 years ago

New:
---
adjustments for ibmkisti (pres, batch_scp, mbuild, mrun, subjob)

new default configuration files .mrun.config.yonsei2011 and .config_block_for_ibmkisti

Changed:

Errors:

bugfix: weighting coefficient added to ibm branch (pres)

Property svn:keywords set to Id Rev

File size: 48.5 KB

Line
1	#!/bin/ksh
2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
3	# $Id: subjob 693 2011-03-08 08:27:49Z raasch $
4
5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
7	# Host zurueckgeschickt werden sollen
8
9
10	# letzte Aenderung:
11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
13	# 06/02/98 - Siggi - berte validiert
14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
15	# moeglich
16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
19	# allgemeine Anpassungen fuer ibm-Rechner
20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
21	# Ruecktransfer des Jobprotokolls fuer diese
22	# Maschine abgeschaltet
23	# 31/10/02 - Siggi - berni validiert
24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
25	# 08/11/02 - Siggi - quanero validiert
26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
27	# 23/01/03 - Siggi - hostname nobel changed to nobela
28	# 06/02/03 - Siggi - gregale validated
29	# 12/02/03 - Siggi - orkan and maestro validated
30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
31	# 12/03/03 - Siggi - nec at DKRZ validated
32	# 13/03/03 - Siggi - new nqs resource variable Memory
33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
34	# node
35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
37	# cxxl added to ibmh
38	# 29/08/03 - Siggi - changes in job queues and communication system on
39	# ibms
40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
41	# 30/10/03 - Siggi - nech is not supported any more
42	# 10/11/03 - Siggi - nech2 renamed to nech
43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
45	# 31/03/04 - Siggi - new option -N for node usage
46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
47	# due to error in ssh installation (otherwise a prompt
48	# for the password appears)
49	# 23/07/04 - Siggi - changes due to the new berni configuration
50	# (federation switch)
51	# 01/09/04 - Gerald new job-classes on hanni
52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
54	# 03/12/04 - Siggi - notification on ibm switched of in case of
55	# delete_dayfile = true, node usage in cdev set to
56	# shared
57	# 16/02/05 - Gerald hababai validated
58	# 29/03/05 - Micha - new job class channi on hanni
59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
60	# on ibms
61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
62	# p_normal
63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
65	# "sn_all", new job class cexp
66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
68	# hurricane (with -X0)
69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
70	# added
71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
72	# 09/02/06 - Siggi - ibmy admitted
73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
74	# 13/04/06 - Siggi - ostria admitted
75	# 18/04/06 - Siggi - new option -O for OpenMP usage
76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
80	# 28/11/06 - Siggi - levanto admitted
81	# 13/02/07 - Siggi - hpmuk releated code removed
82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
84	# 27/07/07 - Siggi - autan admitted
85	# 03/08/07 - Marcus- lcfimm admitted
86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
88	# suggestions
89	# 19/10/07 - Marcus- add new optional argument -g group_number
90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
91	# 30/10/07 - Marcus- further adjustments for queues on lctit
92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
93	# Science)
94	# 14/07/08 - Siggi - adjustments for lcsgih
95	# 23/09/08 - Gerald- paesano admitted
96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
104	# now run on the data nodes (feature=data)
105	# 25/08/09 - BjornM- adapted for lck
106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
108	# set in the config file by the user
109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
110	# adding special1q
111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
112	# 16/10/09 - Carolin-adding permq
113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
114	# 03/02/10 - Siggi - bug in serial jobs removed
115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
116	# notification)
117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
118	# module_calls
119	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
120	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
121	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
122	# lcxt4
123	# 08/12/10 - Siggi - initialization of the module command changed for
124	# SGI-ICE/lcsgi
125	# adjustments for Kyushu Univ. (lcrte, ibmku)
126	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
127	# institute of technology (lctit)
128	# 02/02/11 - Siggi - further asjustments for Tsubame concerning openMP
129	# 06/03/11 - Siggi - adjustments for ibmkisti
130
131
132
133
134	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
135	delete_dayfile=false
136	email_notification=none
137	group_number=none
138	locat=normal
139	no_default_queue=none
140	no_submit=false
141	job_catalog="~/job_queue"
142	job_name=none
143	local_user=$LOGNAME
144	node_usage=shared
145	numprocs=0
146	punkte="..........................................................."
147	submcom=qsub
148	queue=default
149	remote_host=none
150	remote_user=""
151	verify=true
152
153	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
154	typeset -i inumprocs nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
155	typeset -L20 spalte1
156	typeset -R40 spalte2
157	typeset -L60 spalte3
158
159
160
161	# FEHLERBEHANDLUNG
162	# BEI EXIT:
163	trap 'if [[ $locat != normal ]]
164	then
165	case $locat in
166	(option) printf "\n --> available optios can be displayed"
167	printf " by typing:"
168	printf "\n \"subjob ?\" \n";;
169	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
170	(*) printf "\n +++ unknown error"
171	printf "\n please inform S. Raasch!\n"
172	esac
173	[[ -f $job_to_send ]] && rm $job_to_send
174	printf "\n\n+++ SUBJOB killed \n\n"
175	fi' exit
176
177
178	# BEI TERMINAL-BREAK:
179	trap '[[ -f $job_to_send ]] && rm $job_to_send
180	printf "\n\n+++ SUBJOB killed \n\n"
181	exit
182	' 2
183
184
185
186
187	# LOKALEN HOSTNAMEN FESTSTELLEN
188	local_host=$(hostname)
189
190
191
192	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
193	# UEBERHAUPT ZULAESSIG IST
194	case $local_host in
195	(atmos) local_addres=172.20.25.35; local_host=lcide;;
196	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
197	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
198	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
199	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
200	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
201	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
202	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
203	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
204	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
205	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
206	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
207	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
208	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
209	(cs*) local_addres=136.172.44.131; local_host=nech;;
210	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
211	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
212	(node*) local_addres=165.132.26.61 local_host=lck;;
213	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
214	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
215	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
216	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
217	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
218	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
219	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
220	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
221	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
222	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
223	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
224	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
225	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
226	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
227	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
228	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
229	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
230	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
231	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
232	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
233	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
234	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
235	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
236	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
237	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
238	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
239	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
240	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
241	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
242	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
243	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
244	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
245	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
246	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
247	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
248	(*) printf "\n +++ \"$local_host\" unknown";
249	printf "\n please inform S. Raasch!";
250	locat=parameter; exit;;
251	esac
252
253
254
255	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
256	remote_host=$local_host
257
258
259
260
261	# PROZEDUROPTIONEN EINLESEN
262	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
263	do
264	case $option in
265	(c) job_catalog=$OPTARG;;
266	(d) delete_dayfile=true;;
267	(D) no_submit=true;;
268	(e) email_notification=$OPTARG;;
269	(g) group_number=$OPTARG;;
270	(h) remote_host=$OPTARG;;
271	(m) memory=$OPTARG;;
272	(n) job_name=$OPTARG;;
273	(N) node_usage=$OPTARG;;
274	(O) threads_per_task=$OPTARG;;
275	(q) no_default_queue=$OPTARG;;
276	(t) cputime=$OPTARG;;
277	(T) tasks_per_node=$OPTARG;;
278	(u) remote_user=$OPTARG;;
279	(v) verify=false;;
280	(X) numprocs=$OPTARG;;
281	(\?) printf "\n +++ Option $OPTARG unknown \n";
282	locat=option; exit;;
283	esac
284	done
285
286
287	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
288	shift OPTIND-1; file_to_send=$1
289
290
291	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
292	if [ "$1" = "?" ]
293	then
294	(printf "\n *** subjob can be called as follows:\n"
295	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
296	printf "\n Description of available options:\n"
297	printf "\n Option Description Default-Value"
298	printf "\n -c job-input- and output-catalog ~/job_queue"
299	printf "\n -d no job-protocol will be created ---"
300	printf "\n -D only the job-file will be created ---"
301	printf "\n -h execution host, available hosts: $remote_host"
302	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
303	printf "\n lctit, nech, necriam, unics"
304	printf "\n -m memory demand per process in MByte ---"
305	printf "\n -n jobname <jobdatei>"
306	printf "\n -O threads per task (for OpenMP usage) 1"
307	printf "\n -q job-queue to be used default"
308	printf "\n -t allowed cpu-time in seconds ---"
309	printf "\n -T tasks per node (on parallel hosts) ---"
310	printf "\n -u username on execution host from .netrc"
311	printf "\n -v no prompt for confirmation ---"
312	printf "\n -X # of processors (on parallel hosts) 1"
313	printf "\n "
314	printf "\n The only possible positional parameter is <jobfile>:"
315	printf "\n The complete NQS-job must be provided here."
316	printf "\n <jobfile>=? creates this outline\n\n") \| more
317	exit
318	fi
319
320
321
322	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
323	if [[ "$file_to_send" = "" ]]
324	then
325	printf "\n +++ job-file missing"
326	locat=parameter; exit
327	else
328	if [[ -f $file_to_send ]]
329	then
330	true
331	else
332	printf "\n +++ job-file: "
333	printf "\n $file_to_send"
334	printf "\n does not exist"
335	locat=parameter; exit
336	fi
337	fi
338
339
340
341	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
342	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
343	if [[ $job_name = none ]]
344	then
345	job_name=$file_to_send
346	fi
347	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
348	then
349	printf "\n +++ job-file name: "
350	printf "\n $job_name"
351	printf "\n must not contain \"/\"-characters"
352	locat=parameter; exit
353	fi
354
355
356
357
358	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
359	# ODER WENN HOST NICHT ANGEGEBEN WURDE
360	if [[ $remote_host = none ]]
361	then
362	printf "\n +++ host missing"
363	locat=option; exit
364	else
365	case $remote_host in
366	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
367	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
368	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
369	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
370	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
371	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
372	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
373	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
374	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
375	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
376	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
377	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
378	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.4.9-snap.201005191035/bin/qsub;;
379	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
380	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
381	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
382	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
383	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
384	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
385	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
386	locat=parameter; exit;;
387	esac
388	fi
389
390
391	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
392	if [[ $no_default_queue != none ]]
393	then
394	error=false
395	ndq=$no_default_queue
396	case $remote_host in
397	(ibm) case $ndq in
398	(p690_express\|p690_standard\|p690_long) error=false;;
399	(*) error=true;;
400	esac;;
401	(ibmh) case $ndq in
402	(no_class) error=false;;
403	(*) error=true;;
404	esac;;
405	(ibmkisti) case $ndq in
406	(class.32plus\|class.1-2\|class.2-32) error=false;;
407	(*) error=true;;
408	esac;;
409	(ibmku) case $ndq in
410	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
411	(*) error=true;;
412	esac;;
413	(ibms) case $ndq in
414	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
415	(*) error=true;;
416	esac;;
417	(ibmy) case $ndq in
418	(parallel) error=false;;
419	(*) error=true;;
420	esac;;
421	(lckyoto) case $ndq in
422	(eh\|ph) error=false;;
423	(*) error=true;;
424	esac;;
425	(lcsgib\|lcsgih) case $ndq in
426	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
427	(*) error=true;;
428	esac;;
429	(lctit) case $ndq in
430	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
431	(*) error=true;;
432	esac;;
433	(t3eb) case $ndq in
434	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
435	(*) error=true;;
436	esac;;
437	(necriam) case $ndq in
438	(SP\|SS\|P6) error=false;;
439	(*) error=true;;
440	esac;;
441	(t3eh) case $ndq in
442	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
443	(*) error=true;;
444	esac;;
445	(t3ej2\|t3ej5) case $ndq in
446	(low\|normal\|high) error=false;;
447	(*) error=true;;
448	esac;;
449	(t3es) case $ndq in
450	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
451	(*) error=true;;
452	esac;;
453	(unics) case $ndq in
454	(unics\|ht) error=false;;
455	(*) error=true;;
456	esac;;
457	esac
458	if [[ $error = true ]]
459	then
460	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
461	locat=parameter; exit
462	else
463	queue=$no_default_queue
464	fi
465	fi
466
467
468
469	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
470	# AUFTEILEN
471	done=false
472	while [[ $done = false ]]
473	do
474	if (( $cputime <= 0 ))
475	then
476	printf "\n +++ wrong cpu-time or cpu-time missing"
477	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
478	printf "\n >>> "
479	read cputime 1>/dev/null 2>&1
480	else
481	done=true
482	fi
483	done
484	if [[ $remote_host = nech ]]
485	then
486	if (( tasks_per_node != 0 ))
487	then
488	(( cputime = cputime * tasks_per_node ))
489	elif [[ $numprocs != 0 ]]
490	then
491	(( cputime = cputime * numprocs ))
492	fi
493	fi
494	(( stunden = cputime / 3600 ))
495	(( resttime = cputime - stunden * 3600 ))
496	(( minuten = resttime / 60 ))
497	(( sekunden = resttime - minuten * 60 ))
498	timestring=${stunden}:${minuten}:${sekunden}
499
500
501
502	# PRUEFEN DER KERNSPEICHERANFORDERUNG
503	done=false
504	while [[ $done = false ]]
505	do
506	if (( memory <= 0 ))
507	then
508	printf "\n +++ wrong memory demand or memory demand missing"
509	printf "\n >>> Please type memory in MByte per process as INTEGER:"
510	printf "\n >>> "
511	read memory 1>/dev/null 2>&1
512	else
513	done=true
514	fi
515	done
516
517	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
518	then
519	if (( tasks_per_node != 0 ))
520	then
521	(( Memory = memory * tasks_per_node / 1000 ))
522	elif [[ $numprocs != 0 ]]
523	then
524	(( Memory = memory * numprocs / 1000 ))
525	else
526	(( Memory = memory / 1000 ))
527	fi
528	elif [[ $remote_host = lctit ]]
529	then
530	(( Memory = memory * tasks_per_node / 1000 ))
531	fi
532
533
534	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
535	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
536	then
537	(( memory = memory * threads_per_task ))
538	fi
539
540
541	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
542	if (( tasks_per_node != 0 ))
543	then
544	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
545	fi
546
547	# Calculate number of processes per node
548	(( processes_per_node = tasks_per_node * threads_per_task ))
549
550
551	# HEADER-AUSGABE
552	if [[ $verify = true ]]
553	then
554	printf "\n\n"
555	printf "#--------------------------------------------------------------# \n"
556	spalte1=SUBJOB;spalte2=$(date)
557	printf "\| $spalte1$spalte2 \| \n"
558	printf "\| \| \n"
559	printf "\| values of parameters/options: \| \n"
560	spalte1=local_host$punkte; spalte2=$punkte$local_host
561	printf "\| $spalte1$spalte2 \| \n"
562	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
563	printf "\| $spalte1$spalte2 \| \n"
564	spalte1=queue$punkte; spalte2=$punkte$queue
565	printf "\| $spalte1$spalte2 \| \n"
566	spalte1=memory$punkte; spalte2="$punkte$memory mb"
567	printf "\| $spalte1$spalte2 \| \n"
568	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
569	printf "\| $spalte1$spalte2 \| \n"
570	spalte1=job_name$punkte; spalte2="$punkte$job_name"
571	printf "\| $spalte1$spalte2 \| \n"
572	printf "#--------------------------------------------------------------# \n\n"
573
574
575	# KONTROLLABFRAGE, OB ALLES O.K.
576	antwort="dummy"
577	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
578	do
579	read antwort?" >>> continue (y/n) ? "
580	done
581	if [[ $antwort = n \|\| $antwort = N ]]
582	then
583	locat=verify; exit
584	fi
585	printf "\n"
586	fi
587
588
589
590	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
591	kennung=$RANDOM
592	job_on_remhost=${job_name}_${kennung}_$local_host
593	job_to_send=job_to_send_$kennung
594	if [[ $delete_dayfile = false ]]
595	then
596	remote_dayfile=${local_host}_${job_name}_result_$kennung
597	local_dayfile=${remote_host}_${job_name}
598	else
599	remote_dayfile=/dev/null
600	fi
601
602
603
604	# Generate the batch job scripts (qsub/msub/LoadLeveler)
605	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
606	then
607
608	# General LoadLeveler settings
609	execute_in_shell="#!/bin/ksh"
610	use_shell="# @ shell = /bin/ksh"
611	consumable_memory="ConsumableMemory($memory mb)"
612	class="# @ class = $queue"
613	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
614	network_to_use="# @ network.mpi = sn_all,shared,us"
615	data_limit="# @ data_limit = 1.76gb"
616	image_size="# @ image_size = 50"
617	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
618
619	if [[ $email_notification = none ]]
620	then
621	notify_user=""
622	else
623	notify_user="# @ notify_user = $email_notification"
624	if [[ $delete_dayfile = true ]]
625	then
626	notification='# @ notification = never'
627	fi
628	fi
629
630	if [[ $remote_host = ibmh ]]
631	then
632	data_limit=""
633	network_to_use=""
634	class=""
635	environment=""
636	elif [[ $remote_host = ibmkisti ]]
637	then
638	network_to_use="# @ network.MPI = sn_all,shared,US"
639	wall_clock_limit="# @ wall_clock_limit = $timestring"
640	rset="# @ rset = RSET_MCM_AFFINITY"
641	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
642	environment=""
643	use_shell=""
644	data_limit=""
645	image_size=""
646	elif [[ $remote_host = ibmku ]]
647	then
648	execute_in_shell="#!/usr/bin/ksh"
649	use_shell="# @ shell = /usr/bin/ksh"
650	consumable_memory=""
651	environment=""
652	network_to_use="# @ network.mpi = sn_all,shared,us"
653	data_limit=""
654	image_size=""
655	elif [[ $remote_host = ibms ]]
656	then
657	network_to_use="# @ network.mpi = csss,shared,us"
658	elif [[ $remote_host = ibmy ]]
659	then
660	consumable_memory=""
661	network_to_use=""
662	fi
663
664	cat > $job_to_send << %%END%%
665	$execute_in_shell
666	$use_shell
667
668	# @ job_type = parallel
669	# @ job_name = $job_name
670	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
671	# @ output = $remote_dayfile
672	# @ error = $remote_dayfile
673	$wall_clock_limit
674	$image_size
675	$class
676	$environment
677	$network_to_use
678	$data_limit
679	$rset
680	$mcm_affinity_options
681	$notification
682	$notify_user
683
684	%%END%%
685
686	if (( nodes > 0 ))
687	then
688
689	if [[ $remote_host != ibmkisti ]]
690	then
691
692	cat >> $job_to_send << %%END%%
693	# @ node = $nodes
694	# @ tasks_per_node = $processes_per_node
695	# @ node_usage = $node_usage
696	# @ queue
697
698	%%END%%
699
700	else
701
702	cat >> $job_to_send << %%END%%
703	# @ total_tasks = $numprocs
704	# @ blocking = unlimited
705	# @ queue
706
707	%%END%%
708
709	fi
710
711	else
712
713	if [[ $remote_host != ibmy ]]
714	then
715
716	cat >> $job_to_send << %%END%%
717	# @ blocking = unlimited
718	# @ total_tasks = $numprocs
719	# @ node_usage = $node_usage
720	# @ queue
721
722	%%END%%
723
724	else
725
726	cat >> $job_to_send << %%END%%
727	# @ node = 1
728	# @ total_tasks = $numprocs
729	# @ queue
730
731	%%END%%
732
733	fi
734
735	fi
736
737	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
738	then
739
740	cat > $job_to_send << %%END%%
741	#!/bin/ksh
742
743	# @ job_type = serial
744	# @ node_usage = $node_usage
745	# @ job_name = palm
746	# @ wall_clock_limit = ${timestring},$timestring
747	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
748	# @ output = $remote_dayfile
749	# @ error = $remote_dayfile
750	$class
751	$notification
752
753	# @ queue
754
755	%%END%%
756
757	elif [[ $remote_host = lcfimm ]]
758	then
759
760	if [[ $numprocs != 0 ]]
761	then
762	cat > $job_to_send << %%END%%
763	#!/bin/ksh
764	#PBS -N $job_name
765	#PBS -A $project_account
766	#PBS -l walltime=$timestring
767	#PBS -l nodes=${nodes}:ppn=$processes_per_node
768	#PBS -l pmem=${memory}mb
769	#PBS -m abe
770	#PBS -o $remote_dayfile
771	#PBS -j oe
772	mpd &
773
774	%%END%%
775
776	else
777	cat > $job_to_send << %%END%%
778	#!/bin/ksh
779	#PBS -N $job_name
780	#PBS -A $project_account
781	#PBS -l walltime=$timestring
782	#PBS -l ncpus=1
783	#PBS -l pmem=${memory}mb
784	#PBS -m abe
785	#PBS -o $remote_dayfile
786	#PBS -j oe
787
788	%%END%%
789
790	fi
791
792	elif [[ $remote_host = lck ]]
793	then
794
795	if [[ $numprocs != 0 ]]
796	then
797	cat > $job_to_send << %%END%%
798	#!/bin/ksh
799	#PBS -N $job_name
800	#PBS -l walltime=$timestring
801	#PBS -l ncpus=$numprocs
802	#PBS -l pmem=${memory}mb
803	#PBS -o $remote_dayfile
804	#PBS -j oe
805
806	mpd &
807
808	%%END%%
809
810	else
811	cat > $job_to_send << %%END%%
812	#!/bin/ksh
813	#PBS -N $job_name
814	#PBS -l walltime=$timestring
815	#PBS -l ncpus=1
816	#PBS -l pmem=${memory}mb
817	#PBS -o $remote_dayfile
818	#PBS -j oe
819
820	%%END%%
821
822	fi
823
824	elif [[ $remote_host = lcyon ]]
825	then
826
827	if [[ $numprocs != 0 ]]
828	then
829	cat > $job_to_send << %%END%%
830	#!/bin/ksh
831	#PBS -N $job_name
832	#PBS -l walltime=$timestring
833	#PBS -l ncpus=$numprocs
834	#PBS -l pmem=${memory}mb
835	#PBS -o $remote_dayfile
836	#PBS -j oe
837
838	%%END%%
839
840	else
841	cat > $job_to_send << %%END%%
842	#!/bin/ksh
843	#PBS -N $job_name
844	#PBS -l walltime=$timestring
845	#PBS -l ncpus=1
846	#PBS -l pmem=${memory}mb
847	#PBS -o $remote_dayfile
848	#PBS -j oe
849
850	%%END%%
851
852	fi
853
854	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
855	then
856
857	if [[ "$sgi_feature" != "" ]]
858	then
859	feature_directive="#PBS -l feature=$sgi_feature"
860	else
861	feature_directive=""
862	fi
863
864	if [[ $queue = dataq \|\| $queue = permq ]]
865	then
866	feature_directive="#PBS -l feature=data"
867	fi
868
869	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
870	then
871	queue_directive="#PBS -q $queue"
872	else
873	queue_directive=""
874	fi
875
876	if [[ $email_notification = none ]]
877	then
878	email_directive=""
879	else
880	email_directive="#PBS -M $email_notification"
881	fi
882
883	if [[ $numprocs != 0 ]]
884	then
885	cat > $job_to_send << %%END%%
886	#!/bin/bash
887	#PBS -N $job_name
888	#PBS -l walltime=$timestring
889	#PBS -l nodes=$nodes:ppn=${processes_per_node}
890	#PBS -l naccesspolicy=$node_usage
891	#PBS -o $remote_dayfile
892	#PBS -j oe
893	$feature_directive
894	$queue_directive
895	$email_directive
896
897	eval \`/sw/swdist/bin/modulesinit\`
898	#. /usr/share/modules/init/bash
899	$module_calls
900
901	echo ld_library_path=\$LD_LIBRARY_PATH
902
903	%%END%%
904
905	else
906	cat > $job_to_send << %%END%%
907	#PBS -S /bin/bash
908	#PBS -N $job_name
909	#PBS -l walltime=$timestring
910	#PBS -l ncpus=1
911	#PBS -o $remote_dayfile
912	#PBS -j oe
913	$queue_directive
914	$email_directive
915
916	eval \`/sw/swdist/bin/modulesinit\`
917	#. /usr/share/modules/init/bash
918	$module_calls
919
920	%%END%%
921
922	fi
923
924	elif [[ $remote_host = lcxt4 ]]
925	then
926
927	if [[ $numprocs != 0 ]]
928	then
929	cat > $job_to_send << %%END%%
930	#!/bin/ksh
931	#PBS -S /bin/ksh
932	#PBS -N $job_name
933	#PBS -A $project_account
934	#PBS -j oe
935	#PBS -l walltime=$timestring
936	#PBS -l mppwidth=${numprocs}
937	#PBS -l mppnppn=${processes_per_node}
938	#PBS -m abe
939	#PBS -o $remote_dayfile
940	$email_directive
941
942	. /opt/modules/default/init/ksh
943	$module_calls
944
945	%%END%%
946
947	else
948	cat > $job_to_send << %%END%%
949	#!/bin/ksh
950	#PBS -S /bin/ksh
951	#PBS -N $job_name
952	#PBS -A $project_account
953	#PBS -j oe
954	#PBS -l walltime=$timestring
955	#PBS -l ncpus=1
956	#PBS -l pmem=${memory}mb
957	#PBS -m abe
958	$email_directive
959	#PBS -o $remote_dayfile
960
961	. /opt/modules/default/init/ksh
962	$module_calls
963
964	%%END%%
965
966	fi
967
968	elif [[ $remote_host = lckyoto ]]
969	then
970
971	cat > $job_to_send << %%END%%
972	#!/bin/ksh
973	# @\$-o $remote_dayfile
974	# @\$-eo -oi
975	# @\$-lP 16
976	# @\$-lp 1
977	# @\$-lm 28gb -llm unlimited -ls unlimited
978	# @\$-q $queue
979	# @\$-Pvn abs_pack
980	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
981	#. /thin/local/etc/setprofile/intel-11.0.sh
982	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
983	. ~/.myprofile
984	#. /home2/t/t51254/palm/current_version/myprofile
985	#. /thin/apps/pgi/mpi.sh
986	#
987	env
988	#
989	set -x
990
991	%%END%%
992
993	elif [[ $remote_host = lcxt5m ]]
994	then
995
996	if [[ $numprocs != 0 ]]
997	then
998	cat > $job_to_send << %%END%%
999	#!/bin/ksh
1000	#PBS -S /bin/ksh
1001	#PBS -N $job_name
1002	#PBS -j oe
1003	#PBS -l walltime=$timestring
1004	#PBS -l mppwidth=${numprocs}
1005	#PBS -l mppnppn=${processes_per_node}
1006	#PBS -m abe
1007	#PBS -o $remote_dayfile
1008
1009	. /opt/modules/default/init/ksh
1010	$module_calls
1011
1012	%%END%%
1013
1014	else
1015	cat > $job_to_send << %%END%%
1016	#!/bin/ksh
1017	#PBS -S /bin/ksh
1018	#PBS -N $job_name
1019	#PBS -j oe
1020	#PBS -l walltime=$timestring
1021	#PBS -l ncpus=1
1022	#PBS -l pmem=${memory}mb
1023	#PBS -m abe
1024	#PBS -o $remote_dayfile
1025
1026	. /opt/modules/default/init/ksh
1027	$module_calls
1028
1029	%%END%%
1030
1031	fi
1032
1033	elif [[ $remote_host = nech ]]
1034	then
1035
1036	if (( nodes > 1 ))
1037	then
1038	cat > $job_to_send << %%END%%
1039	#!/bin/ksh
1040	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1041	#PBS -l ${qsubmem}=${Memory}gb
1042	#PBS -b $nodes
1043	#PBS -o $remote_dayfile
1044	#PBS -N palm
1045	#PBS -j o
1046	#PBS -T mpisx
1047
1048	%%END%%
1049
1050	elif [[ $numprocs != 0 ]]
1051	then
1052	cat > $job_to_send << %%END%%
1053	#!/bin/ksh
1054	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1055	#PBS -l ${qsubmem}=${Memory}gb
1056	#PBS -o $remote_dayfile
1057	#PBS -N palm
1058	#PBS -j o
1059
1060	%%END%%
1061
1062	else
1063	cat > $job_to_send << %%END%%
1064	#!/bin/ksh
1065	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1066	#PBS -o $remote_dayfile
1067	#PBS -j o
1068
1069	%%END%%
1070
1071	fi
1072
1073	elif [[ $remote_host = necriam ]]
1074	then
1075
1076	if (( nodes > 1 ))
1077	then
1078	cat > $job_to_send << %%END%%
1079	#!/bin/ksh
1080	#PBS -b $nodes
1081	#PBS -o $remote_dayfile
1082	#PBS -N $job_name
1083	#PBS -j o
1084	#PBS -v MPIPROGINV=YES
1085
1086	%%END%%
1087
1088	elif [[ $numprocs != 0 ]]
1089	then
1090	cat > $job_to_send << %%END%%
1091	#!/bin/ksh
1092	#PBS -q ${queue}
1093	#PBS -o $remote_dayfile
1094	#PBS -N $job_name
1095	#PBS -j o
1096	#PBS -v MPIPROGINV=YES
1097
1098	%%END%%
1099
1100	else
1101	cat > $job_to_send << %%END%%
1102	#!/bin/ksh
1103	#PBS -o $remote_dayfile
1104	#PBS -j o
1105
1106	%%END%%
1107
1108	fi
1109
1110	elif [[ $remote_host = lctit ]]
1111	then
1112	cat > $job_to_send << %%END%%
1113	#!/bin/ksh
1114
1115	$module_calls
1116
1117	%%END%%
1118
1119	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1120	if [[ $tasks_per_node != $processes_per_node ]]
1121	then
1122	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1123	else
1124	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1125	fi
1126
1127	else
1128
1129	cat > $job_to_send << %%END%%
1130	# @\$-q ${queue}
1131	# @\$-l${qsubtime} $timestring
1132	# @\$-l${qsubmem} ${memory}mb
1133	# @\$-o $remote_dayfile
1134	# @\$-eo
1135
1136	%%END%%
1137
1138	fi
1139
1140
1141	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1142	# BEI EXIT VERANLASSEN
1143	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1144	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1145	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1146	then
1147	echo "set +vx" >> $job_to_send
1148	echo "trap '" >> $job_to_send
1149	echo "set +vx" >> $job_to_send
1150	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec ]]
1151	then
1152	if [[ $remote_host = ibmh ]]
1153	then
1154	return_queue=c1
1155	elif [[ $remote_host = ibmkisti ]]
1156	then
1157	return_queue=class.1-2
1158	elif [[ $remote_host = ibmku ]]
1159	then
1160	return_queue=sdbg2
1161	elif [[ $remote_host = ibms ]]
1162	then
1163	return_queue=p_normal
1164	elif [[ $remote_host = ibmy ]]
1165	then
1166	return_queue=serial
1167	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1168	then
1169	return_queue=serialq
1170	elif [[ $remote_host = necriam ]]
1171	then
1172	return_queue=SP
1173	else
1174	return_queue=unknown
1175	fi
1176
1177	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1178	then
1179
1180	if [[ $remote_host = ibmku ]]
1181	then
1182	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1183	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1184	else
1185	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1186	fi
1187	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1188	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1189	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1190	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1191	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1192	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1193	if [[ $host != "ibmh" ]]
1194	then
1195	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1196	fi
1197	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1198	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1199
1200	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1201	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1202
1203	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1204	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1205	if [[ $remote_host = ibmku ]]
1206	then
1207	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1208	fi
1209	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1210
1211	elif [[ $remote_host = nech ]]
1212	then
1213	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1214	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1215	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1216	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1217	echo "#PBS -j o" >> $job_to_send
1218	echo " " >> $job_to_send
1219	echo "set -x" >> $job_to_send
1220	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1221	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1222	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1223	echo "%%END%%" >> $job_to_send
1224
1225	elif [[ $remote_host = necriam ]]
1226	then
1227	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1228	echo "#PBS -q $return_queue" >> $job_to_send
1229	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1230	echo "#PBS -j o" >> $job_to_send
1231	echo " " >> $job_to_send
1232	echo "set -x" >> $job_to_send
1233	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1234	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1235	echo "%%END%%" >> $job_to_send
1236
1237	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1238	then
1239	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1240	echo "#!/bin/bash" >> $job_to_send
1241	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1242	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1243	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1244	echo "#PBS -l feature=data" >> $job_to_send
1245	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1246	echo "#PBS -j oe" >> $job_to_send
1247	echo " " >> $job_to_send
1248	echo ". /usr/share/modules/init/bash" >> $job_to_send
1249	echo "set -x" >> $job_to_send
1250	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1251	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1252	echo "%%END%%" >> $job_to_send
1253
1254	else
1255
1256	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1257	echo "# @\\\$-q $return_queue" >> $job_to_send
1258	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1259	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1260	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1261	then
1262	echo "# @\$-l mpp_p=0" >> $job_to_send
1263	fi
1264	echo '# @\$-lF 10mb' >> $job_to_send
1265	# echo '# @\$-o /dev/null' >> $job_to_send
1266	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1267	echo '# @\\\$-eo' >> $job_to_send
1268	echo " " >> $job_to_send
1269	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1270	then
1271	echo "set +vx" >> $job_to_send
1272	echo ". .profile" >> $job_to_send
1273	fi
1274	echo "set -x" >> $job_to_send
1275	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1276	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1277	echo "%%END%%" >> $job_to_send
1278	fi
1279
1280	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1281	then
1282	echo "llsubmit scpjob.$kennung" >> $job_to_send
1283	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1284	then
1285	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1286	echo "msub scpjob.$kennung" >> $job_to_send
1287	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1288	then
1289	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1290	elif [[ $remote_host = t3es ]]
1291	then
1292	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1293	else
1294	echo "qsub scpjob.$kennung" >> $job_to_send
1295	fi
1296	if [[ $remote_host != ibmku ]]
1297	then
1298	echo "rm scpjob.$kennung" >> $job_to_send
1299	fi
1300	if [[ $remote_host = nech ]]
1301	then
1302	echo "cd -" >> $job_to_send
1303	fi
1304	else
1305	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1306	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1307	fi
1308	echo "set -x" >> $job_to_send
1309	echo " ' exit" >> $job_to_send
1310	echo "set -x" >> $job_to_send
1311	fi
1312
1313
1314
1315	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1316	cat $file_to_send >> $job_to_send
1317
1318	if [[ $remote_host = ibm ]]
1319	then
1320	echo " " >> $job_to_send
1321	echo "exit" >> $job_to_send
1322	fi
1323
1324	# remove job file
1325	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
1326	then
1327	echo " " >> $job_to_send
1328	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1329	fi
1330
1331
1332
1333	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1334	if [[ -z $remote_user ]]
1335	then
1336	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1337	then
1338	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1339	fi
1340	fi
1341
1342
1343
1344	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1345	if [[ $no_submit = false ]]
1346	then
1347	if [[ $remote_host != $local_host ]]
1348	then
1349	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1350	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1351	then
1352	job_catalog_save=$job_catalog
1353	job_catalog=job_queue
1354	elif [[ $remote_host = nech ]]
1355	then
1356	job_catalog_save=$job_catalog
1357	job_catalog=/hpf/b/${remote_user}/job_queue
1358	fi
1359	if [[ $local_host = decalpha ]]
1360	then
1361	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
1362	# PASSWORT AB
1363	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1364	elif [[ $remote_host = nech ]]
1365	then
1366	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1367	# TRANSFERIERT WERDEN
1368	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1369	else
1370	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1371	fi
1372	if [[ $? = 1 ]]
1373	then
1374	locat=scp; exit
1375	fi
1376	if [[ $remote_host = ibms ]]
1377	then
1378	job_catalog=$job_catalog_save
1379	fi
1380	[[ $verify = true ]] && printf "\n >>> finished\n"
1381	else
1382	eval job_catalog=$job_catalog
1383	cp $job_to_send ${job_catalog}/$job_on_remhost
1384	fi
1385
1386
1387
1388	# NQS- BZW. LOADLEVELER-JOB STARTEN
1389	if [[ $remote_host != $local_host ]]
1390	then
1391	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1392
1393	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1394	then
1395	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1396	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1397	elif [[ $remote_host = ibmku ]]
1398	then
1399	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1400	else
1401	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1402	fi
1403
1404	[[ $verify = true ]] && printf " >>> o.k.\n"
1405	else
1406	cd $job_catalog
1407	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1408	then
1409	eval $submcom $job_on_remhost
1410	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck \|\| $localhost = lcyon ]]
1411	then
1412	chmod u+x $job_on_remhost
1413	echo "$submcom $job_on_remhost"
1414	eval $submcom $job_on_remhost
1415	elif [[ $local_host = nech ]]
1416	then
1417	if [[ $queue = default ]]
1418	then
1419	eval $submcom $job_on_remhost
1420	else
1421	eval $submcom -q $queue $job_on_remhost
1422	fi
1423	else
1424	qsub $job_on_remhost
1425	fi
1426
1427	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1428	# only at the end of the job.
1429	if [[ $local_host != lctit && $local_host != ibmku ]]
1430	then
1431	rm $job_on_remhost
1432	fi
1433	cd - > /dev/null
1434	fi
1435	fi
1436
1437
1438
1439	# ABSCHLUSSARBEITEN
1440
1441	if [[ $no_submit = false ]]
1442	then
1443	rm $job_to_send
1444	fi
1445	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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source: palm/trunk/SCRIPTS/subjob @ 693

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