Home

Context Navigation

subjob @ 622

Last change on this file since 622 was 622, checked in by raasch, 13 years ago

New:
---

Optional barriers included in order to speed up collective operations
MPI_ALLTOALL and MPI_ALLREDUCE. This feature is controlled with new initial
parameter collective_wait. Default is .FALSE, but .TRUE. on SGI-type
systems. (advec_particles, advec_s_bc, buoyancy, check_for_restart,
cpu_statistics, data_output_2d, data_output_ptseries, flow_statistics,
global_min_max, inflow_turbulence, init_3d_model, init_particles, init_pegrid,
init_slope, parin, pres, poismg, set_particle_attributes, timestep,
read_var_list, user_statistics, write_compressed, write_var_list)

Adjustments for Kyushu Univ. (lcrte, ibmku). Concerning hybrid
(MPI/openMP) runs, the number of openMP threads per MPI tasks can now
be given as an argument to mrun-option -O. (mbuild, mrun, subjob)

Changed:

Initialization of the module command changed for SGI-ICE/lcsgi (mbuild, subjob)

Errors:

Property svn:keywords set to Id Rev

File size: 48.3 KB

Line
1	#!/bin/ksh
2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
3	# $Id: subjob 622 2010-12-10 08:08:13Z raasch $
4
5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
7	# Host zurueckgeschickt werden sollen
8
9
10	# letzte Aenderung:
11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
13	# 06/02/98 - Siggi - berte validiert
14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
15	# moeglich
16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
19	# allgemeine Anpassungen fuer ibm-Rechner
20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
21	# Ruecktransfer des Jobprotokolls fuer diese
22	# Maschine abgeschaltet
23	# 31/10/02 - Siggi - berni validiert
24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
25	# 08/11/02 - Siggi - quanero validiert
26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
27	# 23/01/03 - Siggi - hostname nobel changed to nobela
28	# 06/02/03 - Siggi - gregale validated
29	# 12/02/03 - Siggi - orkan and maestro validated
30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
31	# 12/03/03 - Siggi - nec at DKRZ validated
32	# 13/03/03 - Siggi - new nqs resource variable Memory
33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
34	# node
35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
37	# cxxl added to ibmh
38	# 29/08/03 - Siggi - changes in job queues and communication system on
39	# ibms
40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
41	# 30/10/03 - Siggi - nech is not supported any more
42	# 10/11/03 - Siggi - nech2 renamed to nech
43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
45	# 31/03/04 - Siggi - new option -N for node usage
46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
47	# due to error in ssh installation (otherwise a prompt
48	# for the password appears)
49	# 23/07/04 - Siggi - changes due to the new berni configuration
50	# (federation switch)
51	# 01/09/04 - Gerald new job-classes on hanni
52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
54	# 03/12/04 - Siggi - notification on ibm switched of in case of
55	# delete_dayfile = true, node usage in cdev set to
56	# shared
57	# 16/02/05 - Gerald hababai validated
58	# 29/03/05 - Micha - new job class channi on hanni
59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
60	# on ibms
61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
62	# p_normal
63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
65	# "sn_all", new job class cexp
66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
68	# hurricane (with -X0)
69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
70	# added
71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
72	# 09/02/06 - Siggi - ibmy admitted
73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
74	# 13/04/06 - Siggi - ostria admitted
75	# 18/04/06 - Siggi - new option -O for OpenMP usage
76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
80	# 28/11/06 - Siggi - levanto admitted
81	# 13/02/07 - Siggi - hpmuk releated code removed
82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
84	# 27/07/07 - Siggi - autan admitted
85	# 03/08/07 - Marcus- lcfimm admitted
86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
88	# suggestions
89	# 19/10/07 - Marcus- add new optional argument -g group_number
90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
91	# 30/10/07 - Marcus- further adjustments for queues on lctit
92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
93	# Science)
94	# 14/07/08 - Siggi - adjustments for lcsgih
95	# 23/09/08 - Gerald- paesano admitted
96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
104	# now run on the data nodes (feature=data)
105	# 25/08/09 - BjornM- adapted for lck
106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
108	# set in the config file by the user
109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
110	# adding special1q
111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
112	# 16/10/09 - Carolin-adding permq
113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
114	# 03/02/10 - Siggi - bug in serial jobs removed
115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
116	# notification)
117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
118	# module_calls
119	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
120	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
121	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
122	# lcxt4
123	# 08/12/10 - Siggi - initialization of the module command changed for
124	# SGI-ICE/lcsgi
125	# adjustments for Kyushu Univ. (lcrte, ibmku)
126
127
128
129	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
130	delete_dayfile=false
131	email_notification=none
132	group_number=none
133	locat=normal
134	no_default_queue=none
135	no_submit=false
136	job_catalog="~/job_queue"
137	job_name=none
138	local_user=$LOGNAME
139	node_usage=shared
140	numprocs=0
141	punkte="..........................................................."
142	submcom=qsub
143	queue=default
144	remote_host=none
145	remote_user=""
146	verify=true
147
148	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
149	typeset -i inumprocs nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
150	typeset -L20 spalte1
151	typeset -R40 spalte2
152	typeset -L60 spalte3
153
154
155
156	# FEHLERBEHANDLUNG
157	# BEI EXIT:
158	trap 'if [[ $locat != normal ]]
159	then
160	case $locat in
161	(option) printf "\n --> available optios can be displayed"
162	printf " by typing:"
163	printf "\n \"subjob ?\" \n";;
164	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
165	(*) printf "\n +++ unknown error"
166	printf "\n please inform S. Raasch!\n"
167	esac
168	[[ -f $job_to_send ]] && rm $job_to_send
169	printf "\n\n+++ SUBJOB killed \n\n"
170	fi' exit
171
172
173	# BEI TERMINAL-BREAK:
174	trap '[[ -f $job_to_send ]] && rm $job_to_send
175	printf "\n\n+++ SUBJOB killed \n\n"
176	exit
177	' 2
178
179
180
181
182	# LOKALEN HOSTNAMEN FESTSTELLEN
183	local_host=$(hostname)
184
185
186
187	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
188	# UEBERHAUPT ZULAESSIG IST
189	case $local_host in
190	(atmos) local_addres=172.20.25.35; local_host=lcide;;
191	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
192	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
193	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
194	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
195	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
196	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
197	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
198	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
199	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
200	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
201	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
202	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
203	(cs*) local_addres=136.172.44.131; local_host=nech;;
204	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
205	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
206	(node*) local_addres=165.132.26.61 local_host=lck;;
207	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
208	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
209	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
210	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
211	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
212	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
213	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
214	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
215	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
216	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
217	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
218	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
219	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
220	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
221	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
222	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
223	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
224	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
225	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
226	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
227	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
228	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
229	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
230	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
231	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
232	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
233	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
234	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
235	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
236	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
237	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
238	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
239	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
240	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
241	(*) printf "\n +++ \"$local_host\" unknown";
242	printf "\n please inform S. Raasch!";
243	locat=parameter; exit;;
244	esac
245
246
247
248	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
249	remote_host=$local_host
250
251
252
253
254	# PROZEDUROPTIONEN EINLESEN
255	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
256	do
257	case $option in
258	(c) job_catalog=$OPTARG;;
259	(d) delete_dayfile=true;;
260	(D) no_submit=true;;
261	(e) email_notification=$OPTARG;;
262	(g) group_number=$OPTARG;;
263	(h) remote_host=$OPTARG;;
264	(m) memory=$OPTARG;;
265	(n) job_name=$OPTARG;;
266	(N) node_usage=$OPTARG;;
267	(O) threads_per_task=$OPTARG;;
268	(q) no_default_queue=$OPTARG;;
269	(t) cputime=$OPTARG;;
270	(T) tasks_per_node=$OPTARG;;
271	(u) remote_user=$OPTARG;;
272	(v) verify=false;;
273	(X) numprocs=$OPTARG;;
274	(\?) printf "\n +++ Option $OPTARG unknown \n";
275	locat=option; exit;;
276	esac
277	done
278
279
280	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
281	shift OPTIND-1; file_to_send=$1
282
283
284	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
285	if [ "$1" = "?" ]
286	then
287	(printf "\n *** subjob can be called as follows:\n"
288	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
289	printf "\n Description of available options:\n"
290	printf "\n Option Description Default-Value"
291	printf "\n -c job-input- and output-catalog ~/job_queue"
292	printf "\n -d no job-protocol will be created ---"
293	printf "\n -D only the job-file will be created ---"
294	printf "\n -h execution host, available hosts: $remote_host"
295	printf "\n ibm, ibmh, ibmku, ibms, ibmy, lc...,"
296	printf "\n lctit, nech, necriam, unics"
297	printf "\n -m memory demand per process in MByte ---"
298	printf "\n -n jobname <jobdatei>"
299	printf "\n -O threads per task (for OpenMP usage) 1"
300	printf "\n -q job-queue to be used default"
301	printf "\n -t allowed cpu-time in seconds ---"
302	printf "\n -T tasks per node (on parallel hosts) ---"
303	printf "\n -u username on execution host from .netrc"
304	printf "\n -v no prompt for confirmation ---"
305	printf "\n -X # of processors (on parallel hosts) 1"
306	printf "\n "
307	printf "\n The only possible positional parameter is <jobfile>:"
308	printf "\n The complete NQS-job must be provided here."
309	printf "\n <jobfile>=? creates this outline\n\n") \| more
310	exit
311	fi
312
313
314
315	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
316	if [[ "$file_to_send" = "" ]]
317	then
318	printf "\n +++ job-file missing"
319	locat=parameter; exit
320	else
321	if [[ -f $file_to_send ]]
322	then
323	true
324	else
325	printf "\n +++ job-file: "
326	printf "\n $file_to_send"
327	printf "\n does not exist"
328	locat=parameter; exit
329	fi
330	fi
331
332
333
334	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
335	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
336	if [[ $job_name = none ]]
337	then
338	job_name=$file_to_send
339	fi
340	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
341	then
342	printf "\n +++ job-file name: "
343	printf "\n $job_name"
344	printf "\n must not contain \"/\"-characters"
345	locat=parameter; exit
346	fi
347
348
349
350
351	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
352	# ODER WENN HOST NICHT ANGEGEBEN WURDE
353	if [[ $remote_host = none ]]
354	then
355	printf "\n +++ host missing"
356	locat=option; exit
357	else
358	case $remote_host in
359	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
360	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
361	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
362	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
363	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
364	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
365	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
366	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
367	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
368	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
369	(lctit) queue=lctit; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
370	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.4.9-snap.201005191035/bin/qsub;;
371	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
372	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
373	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
374	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
375	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
376	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
377	locat=parameter; exit;;
378	esac
379	fi
380
381
382	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
383	if [[ $no_default_queue != none ]]
384	then
385	error=false
386	ndq=$no_default_queue
387	case $remote_host in
388	(ibm) case $ndq in
389	(p690_express\|p690_standard\|p690_long) error=false;;
390	(*) error=true;;
391	esac;;
392	(ibmh) case $ndq in
393	(no_class) error=false;;
394	(*) error=true;;
395	esac;;
396	(ibmku) case $ndq in
397	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
398	(*) error=true;;
399	esac;;
400	(ibms) case $ndq in
401	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
402	(*) error=true;;
403	esac;;
404	(ibmy) case $ndq in
405	(parallel) error=false;;
406	(*) error=true;;
407	esac;;
408	(lckyoto) case $ndq in
409	(eh\|ph) error=false;;
410	(*) error=true;;
411	esac;;
412	(lcsgib\|lcsgih) case $ndq in
413	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
414	(*) error=true;;
415	esac;;
416	(lctit) case $ndq in
417	(novice\|sla1\|sla2\|sla3\|RAM64GB\|RAM128GB) error=false;;
418	(*) error=true;;
419	esac;;
420	(t3eb) case $ndq in
421	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
422	(*) error=true;;
423	esac;;
424	(necriam) case $ndq in
425	(SP\|SS\|P6) error=false;;
426	(*) error=true;;
427	esac;;
428	(t3eh) case $ndq in
429	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
430	(*) error=true;;
431	esac;;
432	(t3ej2\|t3ej5) case $ndq in
433	(low\|normal\|high) error=false;;
434	(*) error=true;;
435	esac;;
436	(t3es) case $ndq in
437	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
438	(*) error=true;;
439	esac;;
440	(unics) case $ndq in
441	(unics\|ht) error=false;;
442	(*) error=true;;
443	esac;;
444	esac
445	if [[ $error = true ]]
446	then
447	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
448	locat=parameter; exit
449	else
450	queue=$no_default_queue
451	fi
452	fi
453
454
455
456	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
457	# AUFTEILEN
458	done=false
459	while [[ $done = false ]]
460	do
461	if (( $cputime <= 0 ))
462	then
463	printf "\n +++ wrong cpu-time or cpu-time missing"
464	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
465	printf "\n >>> "
466	read cputime 1>/dev/null 2>&1
467	else
468	done=true
469	fi
470	done
471	if [[ $remote_host = nech ]]
472	then
473	if (( tasks_per_node != 0 ))
474	then
475	(( cputime = cputime * tasks_per_node ))
476	elif [[ $numprocs != 0 ]]
477	then
478	(( cputime = cputime * numprocs ))
479	fi
480	fi
481	(( stunden = cputime / 3600 ))
482	(( resttime = cputime - stunden * 3600 ))
483	(( minuten = resttime / 60 ))
484	(( sekunden = resttime - minuten * 60 ))
485	timestring=${stunden}:${minuten}:${sekunden}
486
487
488
489	# PRUEFEN DER KERNSPEICHERANFORDERUNG
490	done=false
491	while [[ $done = false ]]
492	do
493	if (( memory <= 0 ))
494	then
495	printf "\n +++ wrong memory demand or memory demand missing"
496	printf "\n >>> Please type memory in MByte per process as INTEGER:"
497	printf "\n >>> "
498	read memory 1>/dev/null 2>&1
499	else
500	done=true
501	fi
502	done
503
504	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
505	then
506	if (( tasks_per_node != 0 ))
507	then
508	(( Memory = memory * tasks_per_node / 1000 ))
509	elif [[ $numprocs != 0 ]]
510	then
511	(( Memory = memory * numprocs / 1000 ))
512	else
513	(( Memory = memory / 1000 ))
514	fi
515	fi
516
517
518	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
519	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
520	then
521	(( memory = memory * threads_per_task ))
522	fi
523
524
525	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
526	if (( tasks_per_node != 0 ))
527	then
528	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
529	fi
530
531	# Calculate number of processes per node
532	(( processes_per_node = tasks_per_node * threads_per_task ))
533
534
535	# HEADER-AUSGABE
536	if [[ $verify = true ]]
537	then
538	printf "\n\n"
539	printf "#--------------------------------------------------------------# \n"
540	spalte1=SUBJOB;spalte2=$(date)
541	printf "\| $spalte1$spalte2 \| \n"
542	printf "\| \| \n"
543	printf "\| values of parameters/options: \| \n"
544	spalte1=local_host$punkte; spalte2=$punkte$local_host
545	printf "\| $spalte1$spalte2 \| \n"
546	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
547	printf "\| $spalte1$spalte2 \| \n"
548	spalte1=queue$punkte; spalte2=$punkte$queue
549	printf "\| $spalte1$spalte2 \| \n"
550	spalte1=memory$punkte; spalte2="$punkte$memory mb"
551	printf "\| $spalte1$spalte2 \| \n"
552	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
553	printf "\| $spalte1$spalte2 \| \n"
554	spalte1=job_name$punkte; spalte2="$punkte$job_name"
555	printf "\| $spalte1$spalte2 \| \n"
556	printf "#--------------------------------------------------------------# \n\n"
557
558
559	# KONTROLLABFRAGE, OB ALLES O.K.
560	antwort="dummy"
561	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
562	do
563	read antwort?" >>> continue (y/n) ? "
564	done
565	if [[ $antwort = n \|\| $antwort = N ]]
566	then
567	locat=verify; exit
568	fi
569	printf "\n"
570	fi
571
572
573
574	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
575	kennung=$RANDOM
576	job_on_remhost=${job_name}_${kennung}_$local_host
577	job_to_send=job_to_send_$kennung
578	if [[ $delete_dayfile = false ]]
579	then
580	remote_dayfile=${local_host}_${job_name}_result_$kennung
581	local_dayfile=${remote_host}_${job_name}
582	else
583	remote_dayfile=/dev/null
584	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
585	then
586	notification='# @ notification = never'
587	fi
588	fi
589
590
591
592	# Generate the batch job scripts (qsub/msub/LoadLeveler)
593	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
594	then
595
596	# General LoadLeveler settings
597	execute_in_shell="#!/bin/ksh"
598	use_shell="# @ shell = /bin/ksh"
599	consumable_memory="ConsumableMemory($memory mb)"
600	class="# @ class = $queue"
601	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
602	network_to_use="# @ network.mpi = sn_all,shared,us"
603	data_limit="# @ data_limit = 1.76gb"
604	image_size="# @ image_size = 50"
605
606
607	if [[ $remote_host = ibmh ]]
608	then
609	data_limit=""
610	network_to_use=""
611	class=""
612	environment=""
613	elif [[ $remote_host = ibmku ]]
614	then
615	execute_in_shell="#!/usr/bin/ksh"
616	use_shell="# @ shell = /usr/bin/ksh"
617	consumable_memory=""
618	environment=""
619	network_to_use="# @ network.mpi = sn_all,shared,us"
620	data_limit=""
621	image_size=""
622	elif [[ $remote_host = ibms ]]
623	then
624	network_to_use="# @ network.mpi = csss,shared,us"
625	elif [[ $remote_host = ibmy ]]
626	then
627	consumable_memory=""
628	network_to_use=""
629	fi
630
631	cat > $job_to_send << %%END%%
632	$execute_in_shell
633	$use_shell
634
635	# @ job_type = parallel
636	# @ job_name = palm
637	# @ wall_clock_limit = ${timestring},$timestring
638	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
639	# @ output = $remote_dayfile
640	# @ error = $remote_dayfile
641	$image_size
642	$class
643	$environment
644	$network_to_use
645	$data_limit
646	$notification
647
648	%%END%%
649
650	if (( nodes > 0 ))
651	then
652
653	cat >> $job_to_send << %%END%%
654	# @ node = $nodes
655	# @ tasks_per_node = $processes_per_node
656	# @ node_usage = $node_usage
657	# @ queue
658
659	%%END%%
660
661	else
662
663	if [[ $remote_host != ibmy ]]
664	then
665
666	cat >> $job_to_send << %%END%%
667	# @ blocking = unlimited
668	# @ total_tasks = $numprocs
669	# @ node_usage = $node_usage
670	# @ queue
671
672	%%END%%
673
674	else
675
676	cat >> $job_to_send << %%END%%
677	# @ node = 1
678	# @ total_tasks = $numprocs
679	# @ queue
680
681	%%END%%
682
683	fi
684
685	fi
686
687	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
688	then
689
690	cat > $job_to_send << %%END%%
691	#!/bin/ksh
692
693	# @ job_type = serial
694	# @ node_usage = $node_usage
695	# @ job_name = palm
696	# @ wall_clock_limit = ${timestring},$timestring
697	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
698	# @ output = $remote_dayfile
699	# @ error = $remote_dayfile
700	$class
701	$notification
702
703	# @ queue
704
705	%%END%%
706
707	elif [[ $remote_host = lcfimm ]]
708	then
709
710	if [[ $numprocs != 0 ]]
711	then
712	cat > $job_to_send << %%END%%
713	#!/bin/ksh
714	#PBS -N $job_name
715	#PBS -A $project_account
716	#PBS -l walltime=$timestring
717	#PBS -l nodes=${nodes}:ppn=$processes_per_node
718	#PBS -l pmem=${memory}mb
719	#PBS -m abe
720	#PBS -o $remote_dayfile
721	#PBS -j oe
722	mpd &
723
724	%%END%%
725
726	else
727	cat > $job_to_send << %%END%%
728	#!/bin/ksh
729	#PBS -N $job_name
730	#PBS -A $project_account
731	#PBS -l walltime=$timestring
732	#PBS -l ncpus=1
733	#PBS -l pmem=${memory}mb
734	#PBS -m abe
735	#PBS -o $remote_dayfile
736	#PBS -j oe
737
738	%%END%%
739
740	fi
741
742	elif [[ $remote_host = lck ]]
743	then
744
745	if [[ $numprocs != 0 ]]
746	then
747	cat > $job_to_send << %%END%%
748	#!/bin/ksh
749	#PBS -N $job_name
750	#PBS -l walltime=$timestring
751	#PBS -l ncpus=$numprocs
752	#PBS -l pmem=${memory}mb
753	#PBS -o $remote_dayfile
754	#PBS -j oe
755
756	mpd &
757
758	%%END%%
759
760	else
761	cat > $job_to_send << %%END%%
762	#!/bin/ksh
763	#PBS -N $job_name
764	#PBS -l walltime=$timestring
765	#PBS -l ncpus=1
766	#PBS -l pmem=${memory}mb
767	#PBS -o $remote_dayfile
768	#PBS -j oe
769
770	%%END%%
771
772	fi
773
774	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
775	then
776
777	if [[ "$sgi_feature" != "" ]]
778	then
779	feature_directive="#PBS -l feature=$sgi_feature"
780	else
781	feature_directive=""
782	fi
783
784	if [[ $queue = dataq \|\| $queue = permq ]]
785	then
786	feature_directive="#PBS -l feature=data"
787	fi
788
789	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
790	then
791	queue_directive="#PBS -q $queue"
792	else
793	queue_directive=""
794	fi
795
796	if [[ $email_notification = none ]]
797	then
798	email_directive=""
799	else
800	email_directive="#PBS -M $email_notification"
801	fi
802
803	if [[ $numprocs != 0 ]]
804	then
805	cat > $job_to_send << %%END%%
806	#!/bin/bash
807	#PBS -N $job_name
808	#PBS -l walltime=$timestring
809	#PBS -l nodes=$nodes:ppn=${processes_per_node}
810	#PBS -l naccesspolicy=$node_usage
811	#PBS -o $remote_dayfile
812	#PBS -j oe
813	$feature_directive
814	$queue_directive
815	$email_directive
816
817	eval \`/sw/swdist/bin/modulesinit\`
818	#. /usr/share/modules/init/bash
819	$module_calls
820
821	echo ld_library_path=\$LD_LIBRARY_PATH
822
823	%%END%%
824
825	else
826	cat > $job_to_send << %%END%%
827	#PBS -S /bin/bash
828	#PBS -N $job_name
829	#PBS -l walltime=$timestring
830	#PBS -l ncpus=1
831	#PBS -o $remote_dayfile
832	#PBS -j oe
833	$queue_directive
834	$email_directive
835
836	eval \`/sw/swdist/bin/modulesinit\`
837	#. /usr/share/modules/init/bash
838	$module_calls
839
840	%%END%%
841
842	fi
843
844	elif [[ $remote_host = lcxt4 ]]
845	then
846
847	if [[ $numprocs != 0 ]]
848	then
849	cat > $job_to_send << %%END%%
850	#!/bin/ksh
851	#PBS -S /bin/ksh
852	#PBS -N $job_name
853	#PBS -A $project_account
854	#PBS -j oe
855	#PBS -l walltime=$timestring
856	#PBS -l mppwidth=${numprocs}
857	#PBS -l mppnppn=${processes_per_node}
858	#PBS -m abe
859	#PBS -o $remote_dayfile
860	$email_directive
861
862	. /opt/modules/default/init/ksh
863	$module_calls
864
865	%%END%%
866
867	else
868	cat > $job_to_send << %%END%%
869	#!/bin/ksh
870	#PBS -S /bin/ksh
871	#PBS -N $job_name
872	#PBS -A $project_account
873	#PBS -j oe
874	#PBS -l walltime=$timestring
875	#PBS -l ncpus=1
876	#PBS -l pmem=${memory}mb
877	#PBS -m abe
878	$email_directive
879	#PBS -o $remote_dayfile
880
881	. /opt/modules/default/init/ksh
882	$module_calls
883
884	%%END%%
885
886	fi
887
888	elif [[ $remote_host = lckyoto ]]
889	then
890
891	cat > $job_to_send << %%END%%
892	#!/bin/ksh
893	# @\$-o $remote_dayfile
894	# @\$-eo -oi
895	# @\$-lP 16
896	# @\$-lp 1
897	# @\$-lm 28gb -llm unlimited -ls unlimited
898	# @\$-q $queue
899	# @\$-Pvn abs_pack
900	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
901	#. /thin/local/etc/setprofile/intel-11.0.sh
902	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
903	. ~/.myprofile
904	#. /home2/t/t51254/palm/current_version/myprofile
905	#. /thin/apps/pgi/mpi.sh
906	#
907	env
908	#
909	set -x
910
911	%%END%%
912
913	elif [[ $remote_host = lcxt5m ]]
914	then
915
916	if [[ $numprocs != 0 ]]
917	then
918	cat > $job_to_send << %%END%%
919	#!/bin/ksh
920	#PBS -S /bin/ksh
921	#PBS -N $job_name
922	#PBS -j oe
923	#PBS -l walltime=$timestring
924	#PBS -l mppwidth=${numprocs}
925	#PBS -l mppnppn=${processes_per_node}
926	#PBS -m abe
927	#PBS -o $remote_dayfile
928
929	. /opt/modules/default/init/ksh
930	$module_calls
931
932	%%END%%
933
934	else
935	cat > $job_to_send << %%END%%
936	#!/bin/ksh
937	#PBS -S /bin/ksh
938	#PBS -N $job_name
939	#PBS -j oe
940	#PBS -l walltime=$timestring
941	#PBS -l ncpus=1
942	#PBS -l pmem=${memory}mb
943	#PBS -m abe
944	#PBS -o $remote_dayfile
945
946	. /opt/modules/default/init/ksh
947	$module_calls
948
949	%%END%%
950
951	fi
952
953	elif [[ $remote_host = nech ]]
954	then
955
956	if (( nodes > 1 ))
957	then
958	cat > $job_to_send << %%END%%
959	#!/bin/ksh
960	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
961	#PBS -l ${qsubmem}=${Memory}gb
962	#PBS -b $nodes
963	#PBS -o $remote_dayfile
964	#PBS -N palm
965	#PBS -j o
966	#PBS -T mpisx
967
968	%%END%%
969
970	elif [[ $numprocs != 0 ]]
971	then
972	cat > $job_to_send << %%END%%
973	#!/bin/ksh
974	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
975	#PBS -l ${qsubmem}=${Memory}gb
976	#PBS -o $remote_dayfile
977	#PBS -N palm
978	#PBS -j o
979
980	%%END%%
981
982	else
983	cat > $job_to_send << %%END%%
984	#!/bin/ksh
985	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
986	#PBS -o $remote_dayfile
987	#PBS -j o
988
989	%%END%%
990
991	fi
992
993	elif [[ $remote_host = necriam ]]
994	then
995
996	if (( nodes > 1 ))
997	then
998	cat > $job_to_send << %%END%%
999	#!/bin/ksh
1000	#PBS -b $nodes
1001	#PBS -o $remote_dayfile
1002	#PBS -N $job_name
1003	#PBS -j o
1004	#PBS -v MPIPROGINV=YES
1005
1006	%%END%%
1007
1008	elif [[ $numprocs != 0 ]]
1009	then
1010	cat > $job_to_send << %%END%%
1011	#!/bin/ksh
1012	#PBS -q ${queue}
1013	#PBS -o $remote_dayfile
1014	#PBS -N $job_name
1015	#PBS -j o
1016	#PBS -v MPIPROGINV=YES
1017
1018	%%END%%
1019
1020	else
1021	cat > $job_to_send << %%END%%
1022	#!/bin/ksh
1023	#PBS -o $remote_dayfile
1024	#PBS -j o
1025
1026	%%END%%
1027
1028	fi
1029
1030	elif [[ $remote_host = lctit ]]
1031	then
1032	cat > $job_to_send << %%END%%
1033	#!/bin/bash
1034	#$ -S /bin/bash
1035	cd $job_catalog
1036	export PATH=$PALM_BIN:\$PATH
1037	echo \$PATH
1038
1039	%%END%%
1040
1041	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1042	# submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
1043	submcom="$submcom -g $group_number -N $job_name -rt 4320 -sgeout $remote_dayfile -q $node_usage "
1044
1045	else
1046
1047	cat > $job_to_send << %%END%%
1048	# @\$-q ${queue}
1049	# @\$-l${qsubtime} $timestring
1050	# @\$-l${qsubmem} ${memory}mb
1051	# @\$-o $remote_dayfile
1052	# @\$-eo
1053
1054	%%END%%
1055
1056	fi
1057
1058
1059	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1060	# BEI EXIT VERANLASSEN
1061	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1062	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1063	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1064	then
1065	echo "set +vx" >> $job_to_send
1066	echo "trap '" >> $job_to_send
1067	echo "set +vx" >> $job_to_send
1068	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
1069	then
1070	if [[ $remote_host = ibmh ]]
1071	then
1072	return_queue=c1
1073	elif [[ $remote_host = ibmku ]]
1074	then
1075	return_queue=sdbg2
1076	elif [[ $remote_host = ibms ]]
1077	then
1078	return_queue=p_normal
1079	elif [[ $remote_host = ibmy ]]
1080	then
1081	return_queue=serial
1082	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1083	then
1084	return_queue=serialq
1085	elif [[ $remote_host = lctit ]]
1086	then
1087	return_queue=sla3
1088	elif [[ $remote_host = necriam ]]
1089	then
1090	return_queue=SP
1091	else
1092	return_queue=unknown
1093	fi
1094
1095	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1096	then
1097
1098	if [[ $remote_host = ibmku ]]
1099	then
1100	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1101	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1102	else
1103	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1104	fi
1105	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1106	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1107	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1108	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1109	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1110	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1111	if [[ $host != "ibmh" ]]
1112	then
1113	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1114	fi
1115	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1116	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1117
1118	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1119	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1120
1121	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1122	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1123	if [[ $remote_host = ibmku ]]
1124	then
1125	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1126	fi
1127	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1128
1129	elif [[ $remote_host = nech ]]
1130	then
1131	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1132	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1133	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1134	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1135	echo "#PBS -j o" >> $job_to_send
1136	echo " " >> $job_to_send
1137	echo "set -x" >> $job_to_send
1138	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1139	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1140	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1141	echo "%%END%%" >> $job_to_send
1142
1143	elif [[ $remote_host = necriam ]]
1144	then
1145	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1146	echo "#PBS -q $return_queue" >> $job_to_send
1147	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1148	echo "#PBS -j o" >> $job_to_send
1149	echo " " >> $job_to_send
1150	echo "set -x" >> $job_to_send
1151	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1152	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1153	echo "%%END%%" >> $job_to_send
1154
1155	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1156	then
1157	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1158	echo "#!/bin/bash" >> $job_to_send
1159	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1160	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1161	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1162	echo "#PBS -l feature=data" >> $job_to_send
1163	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1164	echo "#PBS -j oe" >> $job_to_send
1165	echo " " >> $job_to_send
1166	echo ". /usr/share/modules/init/bash" >> $job_to_send
1167	echo "set -x" >> $job_to_send
1168	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1169	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1170	echo "%%END%%" >> $job_to_send
1171
1172	elif [[ $remote_host = lctit ]]
1173	then
1174	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1175	echo "set -x" >> $job_to_send
1176	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
1177	echo "cd $job_catalog" >> $job_to_send
1178	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1179	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1180	echo "%%END%%" >> $job_to_send
1181
1182	else
1183
1184	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1185	echo "# @\\\$-q $return_queue" >> $job_to_send
1186	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1187	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1188	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1189	then
1190	echo "# @\$-l mpp_p=0" >> $job_to_send
1191	fi
1192	echo '# @\$-lF 10mb' >> $job_to_send
1193	# echo '# @\$-o /dev/null' >> $job_to_send
1194	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1195	echo '# @\\\$-eo' >> $job_to_send
1196	echo " " >> $job_to_send
1197	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1198	then
1199	echo "set +vx" >> $job_to_send
1200	echo ". .profile" >> $job_to_send
1201	fi
1202	echo "set -x" >> $job_to_send
1203	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1204	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1205	echo "%%END%%" >> $job_to_send
1206	fi
1207
1208	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1209	then
1210	echo "llsubmit scpjob.$kennung" >> $job_to_send
1211	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1212	then
1213	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1214	echo "msub scpjob.$kennung" >> $job_to_send
1215	elif [[ $remote_host = lctit ]]
1216	then
1217	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1218	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
1219	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
1220	echo "sleep 10" >> $job_to_send
1221	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1222	then
1223	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1224	elif [[ $remote_host = t3es ]]
1225	then
1226	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1227	else
1228	echo "qsub scpjob.$kennung" >> $job_to_send
1229	fi
1230	if [[ $remote_host != ibmku ]]
1231	then
1232	echo "rm scpjob.$kennung" >> $job_to_send
1233	fi
1234	if [[ $remote_host = nech ]]
1235	then
1236	echo "cd -" >> $job_to_send
1237	fi
1238	else
1239	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1240	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1241	fi
1242	echo "set -x" >> $job_to_send
1243	echo " ' exit" >> $job_to_send
1244	echo "set -x" >> $job_to_send
1245	fi
1246
1247
1248
1249	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1250	cat $file_to_send >> $job_to_send
1251
1252	if [[ $remote_host = ibm ]]
1253	then
1254	echo " " >> $job_to_send
1255	echo "exit" >> $job_to_send
1256	fi
1257	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
1258	then
1259	echo " " >> $job_to_send
1260	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1261	fi
1262
1263
1264
1265	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1266	if [[ -z $remote_user ]]
1267	then
1268	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1269	then
1270	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1271	fi
1272	fi
1273
1274
1275
1276	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1277	if [[ $no_submit = false ]]
1278	then
1279	if [[ $remote_host != $local_host ]]
1280	then
1281	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1282	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1283	then
1284	job_catalog_save=$job_catalog
1285	job_catalog=job_queue
1286	elif [[ $remote_host = nech ]]
1287	then
1288	job_catalog_save=$job_catalog
1289	job_catalog=/hpf/b/${remote_user}/job_queue
1290	fi
1291	if [[ $local_host = decalpha ]]
1292	then
1293	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
1294	# PASSWORT AB
1295	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1296	elif [[ $remote_host = nech ]]
1297	then
1298	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1299	# TRANSFERIERT WERDEN
1300	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1301	else
1302	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1303	fi
1304	if [[ $? = 1 ]]
1305	then
1306	locat=scp; exit
1307	fi
1308	if [[ $remote_host = ibms ]]
1309	then
1310	job_catalog=$job_catalog_save
1311	fi
1312	[[ $verify = true ]] && printf "\n >>> finished\n"
1313	else
1314	eval job_catalog=$job_catalog
1315	cp $job_to_send ${job_catalog}/$job_on_remhost
1316	fi
1317
1318
1319
1320	# NQS- BZW. LOADLEVELER-JOB STARTEN
1321	if [[ $remote_host != $local_host ]]
1322	then
1323	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1324	if [[ $remote_host != lctit ]]
1325	then
1326	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1327	then
1328	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1329	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1330	elif [[ $remote_host = ibmku ]]
1331	then
1332	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1333	else
1334	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1335	fi
1336	else
1337	# TIT ERLAUBT NUR DIE AUSFUEHRUNG GANZ BESTIMMTER KOMMANDOS
1338	# MIT SSH, DESHALB AUFRUF PER PIPE
1339	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
1340	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
1341	echo "first try" > send_protocol
1342	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
1343	do
1344	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
1345	then
1346	printf "\n trying to submit job to TIT cluster..."
1347	else
1348	printf "\n +++ failed ... trying to submit again ..."
1349	fi
1350	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
1351	cat send_protocol
1352	done
1353	sleep 10
1354	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
1355	echo "$submcom $job_on_remhost"
1356	rm send_protocol
1357	fi
1358
1359	[[ $verify = true ]] && printf " >>> o.k.\n"
1360	else
1361	cd $job_catalog
1362	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1363	then
1364	eval $submcom $job_on_remhost
1365	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck ]]
1366	then
1367	eval $submcom $job_on_remhost
1368	echo "$submcom $job_on_remhost"
1369	chmod u+x $job_on_remhost
1370
1371	elif [[ $local_host = nech ]]
1372	then
1373	if [[ $queue = default ]]
1374	then
1375	eval $submcom $job_on_remhost
1376	else
1377	eval $submcom -q $queue $job_on_remhost
1378	fi
1379	else
1380	qsub $job_on_remhost
1381	fi
1382
1383	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1384	# only at the end of the job.
1385	if [[ $local_host != lctit && $local_host != ibmku ]]
1386	then
1387	rm $job_on_remhost
1388	fi
1389	cd - > /dev/null
1390	fi
1391	fi
1392
1393
1394
1395	# ABSCHLUSSARBEITEN
1396
1397	if [[ $no_submit = false ]]
1398	then
1399	rm $job_to_send
1400	fi
1401	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 622

Download in other formats: