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source: palm/trunk/SCRIPTS/subjob @ 1466

Last change on this file since 1466 was 1453, checked in by heinze, 10 years ago
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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2014 Leibniz Universitaet Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1453 2014-08-22 09:42:07Z witha $
30	#
31	# 1452 2014-08-22 09:41:06Z heinze
32	# local hosts for blizzard added
33	#
34	# 1450 2014-08-21 07:31:51Z heinze
35	# HLRN-III (lccrayb): testq queue adjusted to mpp1testq
36	#
37	# 1442 2014-07-28 07:09:10Z raasch
38	# HLRN-III (lccrayb/lccrayh) queues adjusted
39	#
40	# 1378 2014-04-28 06:04:58Z raasch
41	# -et option added for lctit
42	#
43	# 1350 2014-04-04 13:01:30Z maronga
44	# location of qsub updated for lcxe6
45	#
46	# 1289 2014-03-04 07:12:34Z raasch
47	# German comments translated to English
48	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
49	#
50	# 1279 2014-01-28 12:10:14Z raasch
51	# node calculation modified due to changes in mrun (tasks_per_node must not be
52	# an integral divisor of numprocs any more)
53	#
54	# 1274 2014-01-09 13:14:54Z heinze
55	# adjustments for lccrayh
56	#
57	# 1266 2013-12-11 12:07:34Z heinze
58	# further adjustments for lccrayb (use msub instead of qsub)
59	#
60	# 1264 2013-12-09 12:46:09Z fricke
61	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
62	#
63	# 1262 2013-12-09 10:57:20Z fricke
64	# further adjustments for lccrayb
65	#
66	# 1260 2013-12-04 12:48:04Z raasch
67	# jaboticaba admitted
68	#
69	# 1255 2013-11-07 14:43:35Z raasch
70	# further adjustments for lccrayb
71	#
72	# 1224 2013-09-16 07:27:23Z raasch
73	# first adjustments for lccrayb
74	#
75	# 1202 2013-07-10 16:22:07Z witha
76	# adjustments for Forwind cluster (lcflow)
77	#
78	# 1199 2013-07-05 14:52:22Z raasch
79	# adjustments for CSC Helsinki (lccrayf)
80	#
81	# use of cluster/express queue enabled (ibmh)
82	# vinessa added (imuk)
83	#
84	# 1103 2013-02-20 02:15:53Z raasch
85	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
86	# instead typeset -L/R),
87	# further adjustments for lckyuh
88	#
89	# 2013-02-10 01:47:43Z raasch
90	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
91	# and for Forwind cluster (lcflow)
92	#
93	# 1094 2013-02-03 01:52:12Z raasch
94	# new option -P for explicit setting of ssh/scp port,
95	# decalpha parts (yonsei) removed
96	#
97	# 2013-02-02 07:06:13Z raasch
98	# adjustments for Kyushu-University computing center (lckyut - tatara)
99	# old changelog messages removed
100	#
101	# 1046 2012-11-09 14:38:45Z maronga
102	# code put under GPL (PALM 3.9)
103	#
104	# 08/07/94 - Siggi - first version finished
105	# 29/06/94 - Siggi - script development started
106	#--------------------------------------------------------------------------------#
107	# subjob - script for automatic generation and submission of batch-job files
108	# for various batch queuing systems
109	#--------------------------------------------------------------------------------#
110
111
112	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
113	delete_dayfile=false
114	email_notification=none
115	group_number=none
116	locat=normal
117	no_default_queue=none
118	no_submit=false
119	job_catalog="~/job_queue"
120	job_name=none
121	local_user=$LOGNAME
122	node_usage=shared
123	numprocs=0
124	punkte="..........................................................."
125	submcom=qsub
126	queue=default
127	remote_host=none
128	remote_user=""
129	verify=true
130
131	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
132	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
133
134
135
136	# ERROR HANDLING
137	# IN CASE OF EXIT:
138	trap 'if [[ $locat != normal ]]
139	then
140	case $locat in
141	(option) printf "\n --> available optios can be displayed"
142	printf " by typing:"
143	printf "\n \"subjob ?\" \n";;
144	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
145	(*) printf "\n +++ unknown error"
146	printf "\n please inform S. Raasch!\n"
147	esac
148	[[ -f $job_to_send ]] && rm $job_to_send
149	printf "\n\n+++ SUBJOB killed \n\n"
150	fi' exit
151
152
153	# IN CASE OF TERMINAL-BREAK:
154	trap '[[ -f $job_to_send ]] && rm $job_to_send
155	printf "\n\n+++ SUBJOB killed \n\n"
156	exit
157	' 2
158
159
160
161
162	# DETERMINE NAME OF LOCAL HOST
163	local_host=$(hostname)
164
165
166
167	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
168	# IS ADMITTED AT ALL)
169	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
170	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
171	case $local_host in
172	(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
173	(atmos) local_addres=172.20.25.35; local_host=lcide;;
174	(austru) local_addres=130.75.105.128; local_host=lcmuk;;
175	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
176	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
177	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
178	(blizzard1\|p*) local_addres=136.172.40.15; local_host=ibmh;;
179	(blizzard2\|p*) local_addres=136.172.40.16; local_host=ibmh;;
180	(blogin\|bxc) local_addres=130.73.233.1; local_host=lccrayb;;
181	(hlogin\|hxc) local_addres=130.75.4.1; local_host=lccrayh;;
182	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
183	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
184	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
185	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
186	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
187	(cs*) local_addres=136.172.44.131; local_host=nech;;
188	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
189	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
190	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
191	(node*) local_addres=165.132.26.61 local_host=lck;;
192	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
193	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
194	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
195	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
196	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
197	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
198	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
199	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
200	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
201	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
202	(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
203	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
204	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
205	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
206	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
207	(meller) local_addres=134.106.74.155; local_host=lcfor;;
208	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
209	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
210	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
211	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
212	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
213	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
214	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
215	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
216	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
217	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
218	(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
219	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
220	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
221	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
222	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
223	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
224	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
225	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
226	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
227	(*) printf "\n +++ \"$local_host\" unknown";
228	printf "\n please contact the PALM group at IMUK";
229	locat=parameter; exit;;
230	esac
231
232
233
234	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
235	remote_host=$local_host
236
237
238
239
240	# READ THE SHELLSCRIPT-OPTIONS
241	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
242	do
243	case $option in
244	(c) job_catalog=$OPTARG;;
245	(d) delete_dayfile=true;;
246	(D) no_submit=true;;
247	(e) email_notification=$OPTARG;;
248	(g) group_number=$OPTARG;;
249	(h) remote_host=$OPTARG;;
250	(m) memory=$OPTARG;;
251	(n) job_name=$OPTARG;;
252	(N) node_usage=$OPTARG;;
253	(O) threads_per_task=$OPTARG;;
254	(P) scp_port=$OPTARG;;
255	(q) no_default_queue=$OPTARG;;
256	(t) cputime=$OPTARG;;
257	(T) tasks_per_node=$OPTARG;;
258	(u) remote_user=$OPTARG;;
259	(v) verify=false;;
260	(X) numprocs=$OPTARG;;
261	(\?) printf "\n +++ Option $OPTARG unknown \n";
262	locat=option; exit;;
263	esac
264	done
265
266
267	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
268	(( to_shift = $OPTIND - 1 ))
269	shift $to_shift; file_to_send=$1
270
271
272	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
273	if [ "$1" = "?" ]
274	then
275	(printf "\n *** subjob can be called as follows:\n"
276	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
277	printf "\n Description of available options:\n"
278	printf "\n Option Description Default-Value"
279	printf "\n -c job-input- and output-catalog ~/job_queue"
280	printf "\n -d no job-protocol will be created ---"
281	printf "\n -D only the job-file will be created ---"
282	printf "\n -h execution host, available hosts: $remote_host"
283	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
284	printf "\n lckiaps, lctit, nech"
285	printf "\n -m memory demand per process in MByte ---"
286	printf "\n -n jobname <jobdatei>"
287	printf "\n -O threads per task (for OpenMP usage) 1"
288	printf "\n -P ssh/scp port default port"
289	printf "\n -q job-queue to be used default"
290	printf "\n -t allowed cpu-time in seconds ---"
291	printf "\n -T tasks per node (on parallel hosts) ---"
292	printf "\n -u username on execution host from .netrc"
293	printf "\n -v no prompt for confirmation ---"
294	printf "\n -X # of processors (on parallel hosts) 1"
295	printf "\n "
296	printf "\n The only possible positional parameter is <jobfile>:"
297	printf "\n The complete NQS-job must be provided here."
298	printf "\n <jobfile>=? creates this outline\n\n") \| more
299	exit
300	fi
301
302
303
304	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
305	if [[ "$file_to_send" = "" ]]
306	then
307	printf "\n +++ job-file missing"
308	locat=parameter; exit
309	else
310	if [[ -f $file_to_send ]]
311	then
312	true
313	else
314	printf "\n +++ job-file: "
315	printf "\n $file_to_send"
316	printf "\n does not exist"
317	locat=parameter; exit
318	fi
319	fi
320
321
322
323	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
324	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
325	if [[ $job_name = none ]]
326	then
327	job_name=$file_to_send
328	fi
329	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
330	then
331	printf "\n +++ job-file name: "
332	printf "\n $job_name"
333	printf "\n must not contain \"/\"-characters"
334	locat=parameter; exit
335	fi
336
337
338
339
340	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
341	# OR IF NO HOST HAS BEEN GIVEN
342	if [[ $remote_host = none ]]
343	then
344	printf "\n +++ host missing"
345	locat=option; exit
346	else
347	case $remote_host in
348	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
349	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
350	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
351	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
352	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
353	(lccrayb) queue=mpp1testq; remote_addres=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
354	(lccrayh) queue=mpp1testq; remote_addres=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
355	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
356	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
357	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
358	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
359	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
360	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
361	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
362	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
363	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
364	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
365	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/default/bin/qsub;;
366	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
367	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
368	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
369	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
370	locat=parameter; exit;;
371	esac
372	fi
373
374
375	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
376	if [[ $no_default_queue != none ]]
377	then
378	error=false
379	ndq=$no_default_queue
380	case $remote_host in
381	(ibm) case $ndq in
382	(p690_express\|p690_standard\|p690_long) error=false;;
383	(*) error=true;;
384	esac;;
385	(ibmh) case $ndq in
386	(cluster\|express) error=false;;
387	(*) error=true;;
388	esac;;
389	(ibmkisti) case $ndq in
390	(class.32plus\|class.1-2\|class.2-32) error=false;;
391	(*) error=true;;
392	esac;;
393	(ibmku) case $ndq in
394	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
395	(*) error=true;;
396	esac;;
397	(ibms) case $ndq in
398	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
399	(*) error=true;;
400	esac;;
401	(lccrayb) case $ndq in
402	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
403	(*) error=true;;
404	esac;;
405	(lccrayh) case $ndq in
406	(dataq\|mpp1q\|mpp1testq\|smp1q\|smp1testq\|specialm1q) error=false;;
407	(*) error=true;;
408	esac;;
409	(lccrayf) case $ndq in
410	(usup\|test*\|small\|large) error=false;;
411	(*) error=true;;
412	esac;;
413	(lcflow) case $ndq in
414	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
415	(*) error=true;;
416	esac;;
417	(lckiaps) case $ndq in
418	(express\|normal) error=false;;
419	(*) error=true;;
420	esac;;
421	(lckyoto) case $ndq in
422	(eh\|ph) error=false;;
423	(*) error=true;;
424	esac;;
425	(lckyuh) case $ndq in
426	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
427	(*) error=true;;
428	esac;;
429	(lckyut) case $ndq in
430	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
431	(*) error=true;;
432	esac;;
433	(lctit) case $ndq in
434	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
435	(*) error=true;;
436	esac;;
437	(t3eb) case $ndq in
438	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
439	(*) error=true;;
440	esac;;
441	(t3eh) case $ndq in
442	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
443	(*) error=true;;
444	esac;;
445	(t3ej2\|t3ej5) case $ndq in
446	(low\|normal\|high) error=false;;
447	(*) error=true;;
448	esac;;
449	(t3es) case $ndq in
450	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
451	(*) error=true;;
452	esac;;
453	esac
454	if [[ $error = true ]]
455	then
456	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
457	locat=parameter; exit
458	else
459	queue=$no_default_queue
460	fi
461	fi
462
463
464
465	# CHECK THE CPU-TIME
466	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
467	done=false
468	while [[ $done = false ]]
469	do
470	if (( $cputime <= 0 ))
471	then
472	printf "\n +++ wrong cpu-time or cpu-time missing"
473	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
474	printf "\n >>> "
475	read cputime 1>/dev/null 2>&1
476	else
477	done=true
478	fi
479	done
480	if [[ $remote_host = nech ]]
481	then
482	if (( tasks_per_node != 0 ))
483	then
484	(( cputime = cputime * tasks_per_node ))
485	elif [[ $numprocs != 0 ]]
486	then
487	(( cputime = cputime * numprocs ))
488	fi
489	fi
490	(( stunden = cputime / 3600 ))
491	(( resttime = cputime - stunden * 3600 ))
492	(( minuten = resttime / 60 ))
493	(( sekunden = resttime - minuten * 60 ))
494	timestring=${stunden}:${minuten}:${sekunden}
495
496
497
498	# CHECK THE MEMORY DEMAND
499	done=false
500	while [[ $done = false ]]
501	do
502	if (( memory <= 0 ))
503	then
504	printf "\n +++ wrong memory demand or memory demand missing"
505	printf "\n >>> Please type memory in MByte per process as INTEGER:"
506	printf "\n >>> "
507	read memory 1>/dev/null 2>&1
508	else
509	done=true
510	fi
511	done
512
513	if [[ $remote_host = nech ]]
514	then
515	if (( tasks_per_node != 0 ))
516	then
517	(( Memory = memory * tasks_per_node / 1000 ))
518	elif [[ $numprocs != 0 ]]
519	then
520	(( Memory = memory * numprocs / 1000 ))
521	else
522	(( Memory = memory / 1000 ))
523	fi
524	elif [[ $remote_host = lctit ]]
525	then
526	(( Memory = memory * tasks_per_node / 1000 ))
527	fi
528
529
530	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
531	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
532	then
533	(( memory = memory * threads_per_task ))
534	fi
535
536
537	# CALCULATE NUMBER OF REQUIRED NODES
538	if (( tasks_per_node != 0 ))
539	then
540	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
541	fi
542
543
544	# CALCULATE NUMBER OF PROCESSES PER NODE
545	(( processes_per_node = tasks_per_node * threads_per_task ))
546
547
548	# CALCULATE NUMBER OF MPI TASKS
549	(( mpi_tasks = numprocs / threads_per_task ))
550
551
552	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
553	if [[ "$scp_port" != "" ]]
554	then
555	PORTOPT="-P $scp_port"
556	SSH_PORTOPT="-p $scp_port"
557	fi
558
559
560	# HEADER-OUTPUT
561	if [[ $verify = true ]]
562	then
563	printf "\n\n"
564	printf "#--------------------------------------------------------------# \n"
565	spalte1=SUBJOB;spalte2=$(date)
566	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
567	printf "\| \| \n"
568	printf "\| values of parameters/options: \| \n"
569	spalte1=$(echo local_host$punkte \| cut -c-20)
570	spalte2=$punkte$local_host
571	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
572	spalte1=$(echo remote_host$punkte \| cut -c-20)
573	spalte2=$punkte$remote_host
574	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
575	spalte1=$(echo queue$punkte \| cut -c-20)
576	spalte2=$punkte$queue
577	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
578	spalte1=$(echo memory$punkte \| cut -c-20)
579	spalte2="$punkte$memory mb"
580	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
581	spalte1=$(echo cputime$punkte \| cut -c-20)
582	spalte2="$punkte$cputime sec"
583	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
584	spalte1=$(echo job_name$punkte \| cut -c-20)
585	spalte2="$punkte$job_name"
586	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
587	printf "#--------------------------------------------------------------# \n\n"
588
589
590	# QUERY CHECK
591	antwort="dummy"
592	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
593	do
594	read antwort?" >>> continue (y/n) ? "
595	done
596	if [[ $antwort = n \|\| $antwort = N ]]
597	then
598	locat=verify; exit
599	fi
600	printf "\n"
601	fi
602
603
604
605	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
606	identifier=$RANDOM
607	job_on_remhost=${job_name}_${identifier}_$local_host
608	job_to_send=job_to_send_$identifier
609	if [[ $delete_dayfile = false ]]
610	then
611	remote_dayfile=${local_host}_${job_name}_result_$identifier
612	local_dayfile=${remote_host}_${job_name}
613	else
614	remote_dayfile=/dev/null
615	fi
616
617
618
619	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
620	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
621	then
622
623	# GENERAL LOADLEVELER SETTINGS
624	execute_in_shell="#!/bin/ksh"
625	use_shell="# @ shell = /bin/ksh"
626	consumable_memory="ConsumableMemory($memory mb)"
627	class="# @ class = $queue"
628	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
629	network_to_use="# @ network.mpi = sn_all,shared,us"
630	data_limit="# @ data_limit = 1.76gb"
631	image_size="# @ image_size = 50"
632	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
633
634	if [[ $email_notification = none ]]
635	then
636	notify_user=""
637	else
638	notify_user="# @ notify_user = $email_notification"
639	if [[ $delete_dayfile = true ]]
640	then
641	notification='# @ notification = never'
642	fi
643	fi
644
645	if [[ $remote_host = ibmh ]]
646	then
647	data_limit=""
648	network_to_use=""
649	class="# @ class = $queue"
650	environment=""
651	rset="# @ rset = RSET_MCM_AFFINITY"
652	task_affinity="# @ task_affinity = core(1)"
653	elif [[ $remote_host = ibmkisti ]]
654	then
655	network_to_use="# @ network.MPI = sn_all,shared,US"
656	wall_clock_limit="# @ wall_clock_limit = $timestring"
657	if [[ $threads_per_task = 1 ]]
658	then
659	rset="# @ rset = RSET_MCM_AFFINITY"
660	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
661	fi
662	environment=""
663	use_shell=""
664	data_limit=""
665	image_size=""
666	elif [[ $remote_host = ibmku ]]
667	then
668	execute_in_shell="#!/usr/bin/ksh"
669	use_shell="# @ shell = /usr/bin/ksh"
670	consumable_memory=""
671	environment=""
672	network_to_use="# @ network.mpi = sn_all,shared,us"
673	data_limit=""
674	image_size=""
675	elif [[ $remote_host = ibms ]]
676	then
677	network_to_use="# @ network.mpi = csss,shared,us"
678	fi
679
680	cat > $job_to_send << %%END%%
681	$execute_in_shell
682	$use_shell
683
684	# @ job_type = parallel
685	# @ job_name = $job_name
686	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
687	# @ output = $remote_dayfile
688	# @ error = $remote_dayfile
689	$wall_clock_limit
690	$image_size
691	$class
692	$environment
693	$network_to_use
694	$data_limit
695	$rset
696	$mcm_affinity_options
697	$task_affinity
698	$notification
699	$notify_user
700
701	%%END%%
702
703	if (( nodes > 0 ))
704	then
705
706	if [[ $remote_host != ibmkisti ]]
707	then
708
709	cat >> $job_to_send << %%END%%
710	# @ node = $nodes
711	# @ tasks_per_node = $processes_per_node
712	# @ node_usage = $node_usage
713	# @ queue
714
715	%%END%%
716
717	else
718
719	cat >> $job_to_send << %%END%%
720	# @ total_tasks = $mpi_tasks
721	# @ blocking = unlimited
722	# @ queue
723
724	%%END%%
725
726	fi
727
728	else
729
730	cat >> $job_to_send << %%END%%
731	# @ blocking = unlimited
732	# @ total_tasks = $numprocs
733	# @ node_usage = $node_usage
734	# @ queue
735
736	%%END%%
737
738	fi
739
740	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
741	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
742	then
743	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
744	fi
745
746	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
747	then
748
749	cat > $job_to_send << %%END%%
750	#!/bin/ksh
751
752	# @ job_type = serial
753	# @ node_usage = $node_usage
754	# @ job_name = palm
755	# @ wall_clock_limit = ${timestring},$timestring
756	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
757	# @ output = $remote_dayfile
758	# @ error = $remote_dayfile
759	$class
760	$notification
761
762	# @ queue
763
764	%%END%%
765
766	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
767	then
768
769	if [[ $numprocs != 0 ]]
770	then
771	cat > $job_to_send << %%END%%
772	#!/bin/bash
773	#PBS -N $job_name
774	#PBS -l walltime=$timestring
775	#PBS -l nodes=$nodes:ppn=$processes_per_node
776	#PBS -o $remote_dayfile
777	#PBS -j oe
778	#PBS -q $queue
779
780	$module_calls
781
782	%%END%%
783
784	else
785
786	continue
787
788	fi
789
790	elif [[ $remote_host = lccrayf ]]
791	then
792
793	if [[ $numprocs != 0 ]]
794	then
795	cat > $job_to_send << %%END%%
796	#!/bin/bash -l
797	#SBATCH -J $job_name
798	#SBATCH -t $timestring
799	#SBATCH -N $nodes
800	#SBATCH --ntasks-per-node=$processes_per_node
801	#SBATCH -p $queue
802	#SBATCH -o $remote_dayfile
803	#SBATCH -e $remote_dayfile
804
805	$init_cmds
806	$module_calls
807
808	%%END%%
809
810	else
811	cat > $job_to_send << %%END%%
812	#!/bin/bash -l
813	#SBATCH -J $job_name
814	#SBATCH -t $timestring
815	#SBATCH -l ncpus=1
816	#SBATCH -l pmem=${memory}mb
817	#SBATCH -m abe
818	#SBATCH -o $remote_dayfile
819	#SBATCH -e $remote_dayfile
820
821	$init_cmds
822	$module_calls
823
824	%%END%%
825
826	fi
827
828	elif [[ $remote_host = lcflow ]]
829	then
830	if [ $memory -gt 1800 ]; then
831	use_himem=""
832	else
833	use_himem="#"
834	fi
835	if [[ $numprocs != 0 ]]
836	then
837	pe_set="#$ -pe impi41 $numprocs"
838	else
839	pe_set="#$ -pe impi41 1"
840	fi
841	if [[ $queue = default ]]
842	then
843	queue_set=""
844	else
845	queue_set="#$ -q $queue"
846	fi
847	[[ "$disc_space" = "" ]] && disc_space=50
848
849	cat > $job_to_send << %%END%%
850	#!/bin/bash
851	#$ -S /bin/bash
852	#$ -N $job_name
853	#$ -cwd
854	#$ -l h_rt=$timestring
855	#$ -l h_vmem=${memory}M
856	#$ -o $remote_dayfile
857	#$ -j y
858	$pe_set
859	#$ -R y
860	${use_himem}#$ -l highmem=true
861	#$ -l h_fsize=${disc_space}G
862	$queue_set
863
864	%%END%%
865
866	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
867	then
868
869	if [[ $numprocs != 0 ]]
870	then
871	cat > $job_to_send << %%END%%
872	#!/bin/ksh
873	#PBS -N $job_name
874	#PBS -l walltime=$timestring
875	#PBS -l ncpus=$numprocs
876	#PBS -l pmem=${memory}mb
877	#PBS -o $remote_dayfile
878	#PBS -l nodes=$nodes:ppn=${processes_per_node}
879	#PBS -j oe
880
881	mpd &
882
883	%%END%%
884
885	else
886	cat > $job_to_send << %%END%%
887	#!/bin/ksh
888	#PBS -N $job_name
889	#PBS -l walltime=$timestring
890	#PBS -l ncpus=1
891	#PBS -l pmem=${memory}mb
892	#PBS -o $remote_dayfile
893	#PBS -j oe
894
895	%%END%%
896
897	fi
898
899	elif [[ $remote_host = lckiaps ]]
900	then
901
902	if [[ $numprocs != 0 ]]
903	then
904	cat > $job_to_send << %%END%%
905	#!/bin/ksh
906	#PBS -N $job_name
907	#PBS -l walltime=$timestring
908	#PBS -l select=1:ncpus=$numprocs
909	#PBS -l pmem=${memory}mb
910	#PBS -q $queue
911	#PBS -o $remote_dayfile
912	#PBS -j oe
913	#PBS -V
914
915	%%END%%
916
917	else
918	cat > $job_to_send << %%END%%
919	#!/bin/ksh
920	#PBS -N $job_name
921	#PBS -l walltime=$timestring
922	#PBS -l ncpus=1
923	#PBS -l pmem=${memory}mb
924	#PBS -o $remote_dayfile
925	#PBS -j oe
926
927	%%END%%
928
929	fi
930
931	elif [[ $remote_host = lcyon ]]
932	then
933
934	if [[ $numprocs != 0 ]]
935	then
936	cat > $job_to_send << %%END%%
937	#!/bin/ksh
938	#PBS -N $job_name
939	#PBS -l walltime=$timestring
940	#PBS -l ncpus=$numprocs
941	#PBS -l pmem=${memory}mb
942	#PBS -o $remote_dayfile
943	#PBS -j oe
944
945	%%END%%
946
947	else
948	cat > $job_to_send << %%END%%
949	#!/bin/ksh
950	#PBS -N $job_name
951	#PBS -l walltime=$timestring
952	#PBS -l ncpus=1
953	#PBS -l pmem=${memory}mb
954	#PBS -o $remote_dayfile
955	#PBS -j oe
956
957	%%END%%
958
959	fi
960
961	elif [[ $remote_host = lcxe6 ]]
962	then
963
964	if [[ $numprocs != 0 ]]
965	then
966	cat > $job_to_send << %%END%%
967	#!/bin/ksh
968	#PBS -S /bin/ksh
969	#PBS -N $job_name
970	#PBS -A $project_account
971	#PBS -j oe
972	#PBS -l walltime=$timestring
973	#PBS -l mppwidth=${numprocs}
974	#PBS -l mppnppn=${processes_per_node}
975	#PBS -m abe
976	#PBS -o $remote_dayfile
977	$email_directive
978
979	$init_cmds
980	$module_calls
981
982	%%END%%
983
984	else
985	cat > $job_to_send << %%END%%
986	#!/bin/ksh
987	#PBS -S /bin/ksh
988	#PBS -N $job_name
989	#PBS -A $project_account
990	#PBS -j oe
991	#PBS -l walltime=$timestring
992	#PBS -l ncpus=1
993	#PBS -l pmem=${memory}mb
994	#PBS -m abe
995	$email_directive
996	#PBS -o $remote_dayfile
997
998	$init_cmds
999	$module_calls
1000
1001	%%END%%
1002
1003	fi
1004
1005	elif [[ $remote_host = lckyoto ]]
1006	then
1007
1008	cat > $job_to_send << %%END%%
1009	#!/bin/ksh
1010	# @\$-o $remote_dayfile
1011	# @\$-eo -oi
1012	# @\$-lP 16
1013	# @\$-lp 1
1014	# @\$-lm 28gb -llm unlimited -ls unlimited
1015	# @\$-q $queue
1016	# @\$-Pvn abs_pack
1017	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1018	#. /thin/local/etc/setprofile/intel-11.0.sh
1019	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1020	. ~/.myprofile
1021	#. /home2/t/t51254/palm/current_version/myprofile
1022	#. /thin/apps/pgi/mpi.sh
1023	#
1024	env
1025	#
1026	set -x
1027
1028	%%END%%
1029
1030	elif [[ $remote_host = lcxt5m ]]
1031	then
1032
1033	if [[ $numprocs != 0 ]]
1034	then
1035	cat > $job_to_send << %%END%%
1036	#!/bin/ksh
1037	#PBS -S /bin/ksh
1038	#PBS -N $job_name
1039	#PBS -j oe
1040	#PBS -l walltime=$timestring
1041	#PBS -l mppwidth=${numprocs}
1042	#PBS -l mppnppn=${processes_per_node}
1043	#PBS -m abe
1044	#PBS -o $remote_dayfile
1045
1046	$init_cmds
1047	$module_calls
1048
1049	%%END%%
1050
1051	else
1052	cat > $job_to_send << %%END%%
1053	#!/bin/ksh
1054	#PBS -S /bin/ksh
1055	#PBS -N $job_name
1056	#PBS -j oe
1057	#PBS -l walltime=$timestring
1058	#PBS -l ncpus=1
1059	#PBS -l pmem=${memory}mb
1060	#PBS -m abe
1061	#PBS -o $remote_dayfile
1062
1063	$init_cmds
1064	$module_calls
1065
1066	%%END%%
1067
1068	fi
1069
1070	elif [[ $remote_host = lckyuh ]]
1071	then
1072	cat > $job_to_send << %%END%%
1073	#!/bin/bash
1074	#PJM -L "rscgrp=$queue"
1075	#PJM -L "node=$nodes"
1076	#PJM --mpi "proc=$numprocs"
1077	#PJM -L "elapse=$timestring"
1078	#PJM -o $remote_dayfile
1079	#PJM -j
1080	#PJM -X
1081	#PJM --no-stging
1082
1083	export LANG=en_US.UTF-8
1084	%%END%%
1085
1086	elif [[ $remote_host = lckyut ]]
1087	then
1088	cat > $job_to_send << %%END%%
1089	#!/bin/bash
1090	#PJM -L "rscgrp=$queue"
1091	#PJM -L "vnode=$numprocs"
1092	#PJM -L "vnode-core=1"
1093	#PJM -L "elapse=$timestring"
1094	#PJM --mpi proc=$numprocs
1095	#PJM -o $remote_dayfile
1096	#PJM -j
1097	#PJM -X
1098	#PJM --no-stging
1099
1100	export LANG=en_US.UTF-8
1101	%%END%%
1102
1103	elif [[ $remote_host = nech ]]
1104	then
1105
1106	if (( nodes > 1 ))
1107	then
1108	cat > $job_to_send << %%END%%
1109	#!/bin/ksh
1110	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1111	#PBS -l ${qsubmem}=${Memory}gb
1112	#PBS -b $nodes
1113	#PBS -o $remote_dayfile
1114	#PBS -N palm
1115	#PBS -j o
1116	#PBS -T mpisx
1117
1118	%%END%%
1119
1120	elif [[ $numprocs != 0 ]]
1121	then
1122	cat > $job_to_send << %%END%%
1123	#!/bin/ksh
1124	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1125	#PBS -l ${qsubmem}=${Memory}gb
1126	#PBS -o $remote_dayfile
1127	#PBS -N palm
1128	#PBS -j o
1129
1130	%%END%%
1131
1132	else
1133	cat > $job_to_send << %%END%%
1134	#!/bin/ksh
1135	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1136	#PBS -o $remote_dayfile
1137	#PBS -j o
1138
1139	%%END%%
1140
1141	fi
1142
1143	elif [[ $remote_host = lctit ]]
1144	then
1145	cat > $job_to_send << %%END%%
1146	#!/bin/ksh
1147	$init_cmds
1148	$module_calls
1149
1150	%%END%%
1151
1152	# SET OPTIONS FOR SUBMIT-COMMAND
1153	if [[ $tasks_per_node != $processes_per_node ]]
1154	then
1155	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -et 1 -q $queue "
1156	else
1157	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -et 1 -q $queue "
1158	fi
1159
1160	else
1161
1162	cat > $job_to_send << %%END%%
1163	# @\$-q ${queue}
1164	# @\$-l${qsubtime} $timestring
1165	# @\$-l${qsubmem} ${memory}mb
1166	# @\$-o $remote_dayfile
1167	# @\$-eo
1168
1169	%%END%%
1170
1171	fi
1172
1173
1174	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1175	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1176	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1177	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1178	then
1179	echo "set +vx" >> $job_to_send
1180	echo "trap '" >> $job_to_send
1181	echo "set +vx" >> $job_to_send
1182	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1183	then
1184	if [[ $remote_host = ibmh ]]
1185	then
1186	return_queue=c1
1187	elif [[ $remote_host = ibmkisti ]]
1188	then
1189	return_queue=class.1-2
1190	elif [[ $remote_host = ibmku ]]
1191	then
1192	return_queue=sdbg2
1193	elif [[ $remote_host = ibms ]]
1194	then
1195	return_queue=p_normal
1196	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1197	then
1198	return_queue=dataq
1199	elif [[ $remote_host = lckiaps ]]
1200	then
1201	return_queue=express
1202	elif [[ $remote_host = lckyuh ]]
1203	then
1204	return_queue=cx-single
1205	elif [[ $remote_host = lckyut ]]
1206	then
1207	return_queue=cx-single
1208	else
1209	return_queue=unknown
1210	fi
1211
1212	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1213	then
1214
1215	if [[ $remote_host = ibmku ]]
1216	then
1217	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1218	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1219	else
1220	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1221	fi
1222	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1223	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1224	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1225	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1226	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1227	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1228	if [[ $host != "ibmh" ]]
1229	then
1230	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1231	fi
1232	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1233	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1234
1235	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1236	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1237
1238	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1239	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1240	if [[ $remote_host = ibmku ]]
1241	then
1242	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1243	fi
1244	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1245
1246	elif [[ $remote_host = nech ]]
1247	then
1248	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1249	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1250	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1251	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1252	echo "#PBS -j o" >> $job_to_send
1253	echo " " >> $job_to_send
1254	echo "set -x" >> $job_to_send
1255	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1256	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1257	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1258	echo "%%END%%" >> $job_to_send
1259
1260	elif [[ $remote_host = lckyuh ]]
1261	then
1262	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1263	echo "#!/bin/bash" >> $job_to_send
1264	echo "#PJM -L \"node=1\"" >> $job_to_send
1265	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1266	echo "#PJM --no-stging" >> $job_to_send
1267	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1268	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1269	echo "#PJM -j" >> $job_to_send
1270	echo " " >> $job_to_send
1271	echo "export LANG=en_US.UTF-8" >> $job_to_send
1272	echo "set -x" >> $job_to_send
1273	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1274	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1275	echo "%%END%%" >> $job_to_send
1276
1277	elif [[ $remote_host = lckyut ]]
1278	then
1279	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1280	echo "#!/bin/bash" >> $job_to_send
1281	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1282	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1283	echo "#PJM --no-stging" >> $job_to_send
1284	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1285	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1286	echo "#PJM -j" >> $job_to_send
1287	echo " " >> $job_to_send
1288	echo "export LANG=en_US.UTF-8" >> $job_to_send
1289	echo "set -x" >> $job_to_send
1290	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1291	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1292	echo "%%END%%" >> $job_to_send
1293
1294	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1295	then
1296	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1297	echo "#!/bin/bash" >> $job_to_send
1298	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1299	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1300	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1301	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1302	echo "#PBS -j oe" >> $job_to_send
1303	echo " " >> $job_to_send
1304	echo "set -x" >> $job_to_send
1305	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1306	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1307	echo "%%END%%" >> $job_to_send
1308
1309	elif [[ $remote_host = lcflow ]]
1310	then
1311	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1312	echo "#!/bin/bash" >> $job_to_send
1313	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1314	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1315	echo "SGEPREFIX -cwd" >> $job_to_send
1316	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1317	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1318	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1319	echo "SGEPREFIX -j y" >> $job_to_send
1320	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1321	echo " " >> $job_to_send
1322	echo "set -x" >> $job_to_send
1323	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1324	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1325	echo "" >> $job_to_send
1326	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1327	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1328	echo "rm -f scpjob.${identifier}" >> $job_to_send
1329	echo "%%END%%" >> $job_to_send
1330	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1331	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1332
1333	else
1334
1335	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1336	echo "# @\\\$-q $return_queue" >> $job_to_send
1337	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1338	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1339	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1340	then
1341	echo "# @\$-l mpp_p=0" >> $job_to_send
1342	fi
1343	echo '# @\$-lF 10mb' >> $job_to_send
1344	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1345	echo '# @\\\$-eo' >> $job_to_send
1346	echo " " >> $job_to_send
1347	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1348	then
1349	echo "set +vx" >> $job_to_send
1350	echo ". .profile" >> $job_to_send
1351	fi
1352	echo "set -x" >> $job_to_send
1353	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1354	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1355	echo "%%END%%" >> $job_to_send
1356	fi
1357
1358	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1359	then
1360	echo "llsubmit scpjob.$identifier" >> $job_to_send
1361	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1362	then
1363	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1364	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1365	then
1366	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1367	elif [[ $remote_host = t3es ]]
1368	then
1369	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1370	elif [[ $remote_host = lckiaps ]]
1371	then
1372	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1373	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1374	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1375	elif [[ $remote_host = lckyu* ]]
1376	then
1377	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1378	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1379	elif [[ $remote_host = lcflow ]]
1380	then
1381	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1382	echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1383	else
1384	echo "$submcom scpjob.$identifier" >> $job_to_send
1385	fi
1386	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1387	then
1388	echo "rm scpjob.$identifier" >> $job_to_send
1389	fi
1390	if [[ $remote_host = nech ]]
1391	then
1392	echo "cd -" >> $job_to_send
1393	fi
1394	else
1395	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1396	# ??? funktioniert das ÃŒberhaupt noch ???
1397	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1398	fi
1399	echo "set -x" >> $job_to_send
1400	echo " ' exit" >> $job_to_send
1401	echo "set -x" >> $job_to_send
1402	fi
1403
1404
1405
1406	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1407	cat $file_to_send >> $job_to_send
1408
1409	if [[ $remote_host = ibm ]]
1410	then
1411	echo " " >> $job_to_send
1412	echo "exit" >> $job_to_send
1413	fi
1414
1415	# REMOVE JOB-FILE
1416	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1417	then
1418	echo " " >> $job_to_send
1419	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1420	fi
1421
1422
1423	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1424	if [[ $no_submit = false ]]
1425	then
1426	if [[ $remote_host != $local_host ]]
1427	then
1428	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1429	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1430	then
1431	job_catalog_save=$job_catalog
1432	job_catalog=job_queue
1433	elif [[ $remote_host = nech ]]
1434	then
1435	job_catalog_save=$job_catalog
1436	job_catalog=/hpf/b/${remote_user}/job_queue
1437	fi
1438	if [[ $remote_host = nech ]]
1439	then
1440	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1441	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1442	else
1443	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1444	fi
1445	if [[ $? = 1 ]]
1446	then
1447	locat=scp; exit
1448	fi
1449	if [[ $remote_host = ibms ]]
1450	then
1451	job_catalog=$job_catalog_save
1452	fi
1453	[[ $verify = true ]] && printf "\n >>> finished\n"
1454	else
1455	eval job_catalog=$job_catalog
1456	cp $job_to_send ${job_catalog}/$job_on_remhost
1457	fi
1458
1459
1460
1461	# START NQS- / LOADLEVELER-JOB
1462	if [[ $remote_host != $local_host ]]
1463	then
1464	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1465
1466	if [[ $remote_host = ibmku ]]
1467	then
1468	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1469	elif [[ $remote_host = lcflow ]]
1470	then
1471	/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1472	else
1473	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1474	fi
1475
1476	[[ $verify = true ]] && printf " >>> o.k.\n"
1477	else
1478	cd $job_catalog
1479	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1480	then
1481	eval $submcom $job_on_remhost
1482	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1483	then
1484	chmod u+x $job_on_remhost
1485	eval $submcom $job_on_remhost
1486	elif [[ $local_host = nech ]]
1487	then
1488	if [[ $queue = default ]]
1489	then
1490	eval $submcom $job_on_remhost
1491	else
1492	eval $submcom -q $queue $job_on_remhost
1493	fi
1494	else
1495	qsub $job_on_remhost
1496	fi
1497
1498	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1499	# AT THE END OF THE JOB
1500	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1501	then
1502	rm $job_on_remhost
1503	fi
1504	cd - > /dev/null
1505	fi
1506	fi
1507
1508
1509
1510	# FINAL ACTIONS
1511	if [[ $no_submit = false ]]
1512	then
1513	rm -f $job_to_send
1514	fi
1515	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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