Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 1196

Last change on this file since 1196 was 1185, checked in by heinze, 11 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 54.3 KB

Line
1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1185 2013-06-17 14:07:59Z heinze $
30	# use of cluster/express queue enabled (ibmh)
31	# vinessa added (imuk)
32	#
33	# 1103 2013-02-20 02:15:53Z raasch
34	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
35	# instead typeset -L/R),
36	# further adjustments for lckyuh
37	#
38	# 2013-02-10 01:47:43Z raasch
39	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
40	# and for Forwind cluster (lcflow)
41	#
42	# 1094 2013-02-03 01:52:12Z raasch
43	# new option -P for explicit setting of ssh/scp port,
44	# decalpha parts (yonsei) removed
45	#
46	# 2013-02-02 07:06:13Z raasch
47	# adjustments for Kyushu-University computing center (lckyut - tatara)
48	# old changelog messages removed
49	#
50	# 1046 2012-11-09 14:38:45Z maronga
51	# code put under GPL (PALM 3.9)
52	#
53	# 08/07/94 - Siggi - first version finished
54	# 29/06/94 - Siggi - script development started
55	#--------------------------------------------------------------------------------#
56	# subjob - script for automatic generation and submission of batch-job files
57	# for various batch queuing systems
58	#--------------------------------------------------------------------------------#
59
60
61	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
62	delete_dayfile=false
63	email_notification=none
64	group_number=none
65	locat=normal
66	no_default_queue=none
67	no_submit=false
68	job_catalog="~/job_queue"
69	job_name=none
70	local_user=$LOGNAME
71	node_usage=shared
72	numprocs=0
73	punkte="..........................................................."
74	submcom=qsub
75	queue=default
76	remote_host=none
77	remote_user=""
78	verify=true
79
80	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
81	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
82
83
84
85	# FEHLERBEHANDLUNG
86	# BEI EXIT:
87	trap 'if [[ $locat != normal ]]
88	then
89	case $locat in
90	(option) printf "\n --> available optios can be displayed"
91	printf " by typing:"
92	printf "\n \"subjob ?\" \n";;
93	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
94	(*) printf "\n +++ unknown error"
95	printf "\n please inform S. Raasch!\n"
96	esac
97	[[ -f $job_to_send ]] && rm $job_to_send
98	printf "\n\n+++ SUBJOB killed \n\n"
99	fi' exit
100
101
102	# BEI TERMINAL-BREAK:
103	trap '[[ -f $job_to_send ]] && rm $job_to_send
104	printf "\n\n+++ SUBJOB killed \n\n"
105	exit
106	' 2
107
108
109
110
111	# LOKALEN HOSTNAMEN FESTSTELLEN
112	local_host=$(hostname)
113
114
115
116	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
117	# UEBERHAUPT ZULAESSIG IST
118	# Note: One of the entries for "lck" or "lckordi" always has to be
119	# comment out, because the hostname (node*) is same for both machines
120	case $local_host in
121	(atmos) local_addres=172.20.25.35; local_host=lcide;;
122	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
123	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
124	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
125	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
126	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
127	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
128	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
129	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
130	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
131	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
132	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
133	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
134	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
135	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
136	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
137	(cs*) local_addres=136.172.44.131; local_host=nech;;
138	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
139	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
140	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
141	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
142	(node*) local_addres=165.132.26.61 local_host=lck;;
143	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
144	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
145	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
146	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
147	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
148	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
149	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
150	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
151	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
152	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
153	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
154	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
155	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
156	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
157	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
158	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
159	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
160	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
161	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
162	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
163	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
164	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
165	(meller) local_addres=134.106.74.155; local_host=lcfor;;
166	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
167	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
168	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
169	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
170	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
171	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
172	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
173	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
174	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
175	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
176	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
177	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
178	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
179	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
180	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
181	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
182	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
183	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
184	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
185	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
186	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
187	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
188	(*) printf "\n +++ \"$local_host\" unknown";
189	printf "\n please inform S. Raasch!";
190	locat=parameter; exit;;
191	esac
192
193
194
195	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
196	remote_host=$local_host
197
198
199
200
201	# PROZEDUROPTIONEN EINLESEN
202	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
203	do
204	case $option in
205	(c) job_catalog=$OPTARG;;
206	(d) delete_dayfile=true;;
207	(D) no_submit=true;;
208	(e) email_notification=$OPTARG;;
209	(g) group_number=$OPTARG;;
210	(h) remote_host=$OPTARG;;
211	(m) memory=$OPTARG;;
212	(n) job_name=$OPTARG;;
213	(N) node_usage=$OPTARG;;
214	(O) threads_per_task=$OPTARG;;
215	(P) scp_port=$OPTARG;;
216	(q) no_default_queue=$OPTARG;;
217	(t) cputime=$OPTARG;;
218	(T) tasks_per_node=$OPTARG;;
219	(u) remote_user=$OPTARG;;
220	(v) verify=false;;
221	(X) numprocs=$OPTARG;;
222	(\?) printf "\n +++ Option $OPTARG unknown \n";
223	locat=option; exit;;
224	esac
225	done
226
227
228	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
229	(( to_shift = $OPTIND - 1 ))
230	shift $to_shift; file_to_send=$1
231
232
233	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
234	if [ "$1" = "?" ]
235	then
236	(printf "\n *** subjob can be called as follows:\n"
237	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
238	printf "\n Description of available options:\n"
239	printf "\n Option Description Default-Value"
240	printf "\n -c job-input- and output-catalog ~/job_queue"
241	printf "\n -d no job-protocol will be created ---"
242	printf "\n -D only the job-file will be created ---"
243	printf "\n -h execution host, available hosts: $remote_host"
244	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
245	printf "\n lckiaps, lctit, nech, necriam, unics"
246	printf "\n -m memory demand per process in MByte ---"
247	printf "\n -n jobname <jobdatei>"
248	printf "\n -O threads per task (for OpenMP usage) 1"
249	printf "\n -P ssh/scp port default port"
250	printf "\n -q job-queue to be used default"
251	printf "\n -t allowed cpu-time in seconds ---"
252	printf "\n -T tasks per node (on parallel hosts) ---"
253	printf "\n -u username on execution host from .netrc"
254	printf "\n -v no prompt for confirmation ---"
255	printf "\n -X # of processors (on parallel hosts) 1"
256	printf "\n "
257	printf "\n The only possible positional parameter is <jobfile>:"
258	printf "\n The complete NQS-job must be provided here."
259	printf "\n <jobfile>=? creates this outline\n\n") \| more
260	exit
261	fi
262
263
264
265	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
266	if [[ "$file_to_send" = "" ]]
267	then
268	printf "\n +++ job-file missing"
269	locat=parameter; exit
270	else
271	if [[ -f $file_to_send ]]
272	then
273	true
274	else
275	printf "\n +++ job-file: "
276	printf "\n $file_to_send"
277	printf "\n does not exist"
278	locat=parameter; exit
279	fi
280	fi
281
282
283
284	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
285	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
286	if [[ $job_name = none ]]
287	then
288	job_name=$file_to_send
289	fi
290	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
291	then
292	printf "\n +++ job-file name: "
293	printf "\n $job_name"
294	printf "\n must not contain \"/\"-characters"
295	locat=parameter; exit
296	fi
297
298
299
300
301	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
302	# ODER WENN HOST NICHT ANGEGEBEN WURDE
303	if [[ $remote_host = none ]]
304	then
305	printf "\n +++ host missing"
306	locat=option; exit
307	else
308	case $remote_host in
309	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
310	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
311	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
312	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
313	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
314	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
315	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
316	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
317	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
318	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
319	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
320	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
321	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
322	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
323	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
324	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
325	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
326	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
327	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
328	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
329	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
330	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
331	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
332	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
333	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
334	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
335	locat=parameter; exit;;
336	esac
337	fi
338
339
340	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
341	if [[ $no_default_queue != none ]]
342	then
343	error=false
344	ndq=$no_default_queue
345	case $remote_host in
346	(ibm) case $ndq in
347	(p690_express\|p690_standard\|p690_long) error=false;;
348	(*) error=true;;
349	esac;;
350	(ibmh) case $ndq in
351	(cluster\|express) error=false;;
352	(*) error=true;;
353	esac;;
354	(ibmkisti) case $ndq in
355	(class.32plus\|class.1-2\|class.2-32) error=false;;
356	(*) error=true;;
357	esac;;
358	(ibmku) case $ndq in
359	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
360	(*) error=true;;
361	esac;;
362	(ibms) case $ndq in
363	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
364	(*) error=true;;
365	esac;;
366	(ibmy) case $ndq in
367	(parallel) error=false;;
368	(*) error=true;;
369	esac;;
370	(lcflow) case $ndq in
371	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
372	(*) error=true;;
373	esac;;
374	(lckiaps) case $ndq in
375	(express\|normal) error=false;;
376	(*) error=true;;
377	esac;;
378	(lckyoto) case $ndq in
379	(eh\|ph) error=false;;
380	(*) error=true;;
381	esac;;
382	(lckyuh) case $ndq in
383	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
384	(*) error=true;;
385	esac;;
386	(lckyut) case $ndq in
387	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
388	(*) error=true;;
389	esac;;
390	(lcsgib\|lcsgih) case $ndq in
391	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
392	(*) error=true;;
393	esac;;
394	(lctit) case $ndq in
395	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
396	(*) error=true;;
397	esac;;
398	(t3eb) case $ndq in
399	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
400	(*) error=true;;
401	esac;;
402	(necriam) case $ndq in
403	(SP\|SS\|P6) error=false;;
404	(*) error=true;;
405	esac;;
406	(t3eh) case $ndq in
407	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
408	(*) error=true;;
409	esac;;
410	(t3ej2\|t3ej5) case $ndq in
411	(low\|normal\|high) error=false;;
412	(*) error=true;;
413	esac;;
414	(t3es) case $ndq in
415	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
416	(*) error=true;;
417	esac;;
418	(unics) case $ndq in
419	(unics\|ht) error=false;;
420	(*) error=true;;
421	esac;;
422	esac
423	if [[ $error = true ]]
424	then
425	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
426	locat=parameter; exit
427	else
428	queue=$no_default_queue
429	fi
430	fi
431
432
433
434	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
435	# AUFTEILEN
436	done=false
437	while [[ $done = false ]]
438	do
439	if (( $cputime <= 0 ))
440	then
441	printf "\n +++ wrong cpu-time or cpu-time missing"
442	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
443	printf "\n >>> "
444	read cputime 1>/dev/null 2>&1
445	else
446	done=true
447	fi
448	done
449	if [[ $remote_host = nech ]]
450	then
451	if (( tasks_per_node != 0 ))
452	then
453	(( cputime = cputime * tasks_per_node ))
454	elif [[ $numprocs != 0 ]]
455	then
456	(( cputime = cputime * numprocs ))
457	fi
458	fi
459	(( stunden = cputime / 3600 ))
460	(( resttime = cputime - stunden * 3600 ))
461	(( minuten = resttime / 60 ))
462	(( sekunden = resttime - minuten * 60 ))
463	timestring=${stunden}:${minuten}:${sekunden}
464
465
466
467	# PRUEFEN DER KERNSPEICHERANFORDERUNG
468	done=false
469	while [[ $done = false ]]
470	do
471	if (( memory <= 0 ))
472	then
473	printf "\n +++ wrong memory demand or memory demand missing"
474	printf "\n >>> Please type memory in MByte per process as INTEGER:"
475	printf "\n >>> "
476	read memory 1>/dev/null 2>&1
477	else
478	done=true
479	fi
480	done
481
482	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
483	then
484	if (( tasks_per_node != 0 ))
485	then
486	(( Memory = memory * tasks_per_node / 1000 ))
487	elif [[ $numprocs != 0 ]]
488	then
489	(( Memory = memory * numprocs / 1000 ))
490	else
491	(( Memory = memory / 1000 ))
492	fi
493	elif [[ $remote_host = lctit ]]
494	then
495	(( Memory = memory * tasks_per_node / 1000 ))
496	fi
497
498
499	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
500	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
501	then
502	(( memory = memory * threads_per_task ))
503	fi
504
505
506	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
507	if (( tasks_per_node != 0 ))
508	then
509	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
510	fi
511
512
513	# Calculate number of processes per node
514	(( processes_per_node = tasks_per_node * threads_per_task ))
515
516
517	# Calculate number of MPI tasks
518	(( mpi_tasks = numprocs / threads_per_task ))
519
520
521	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
522	if [[ "$scp_port" != "" ]]
523	then
524	PORTOPT="-P $scp_port"
525	SSH_PORTOPT="-p $scp_port"
526	fi
527
528
529	# HEADER-AUSGABE
530	if [[ $verify = true ]]
531	then
532	printf "\n\n"
533	printf "#--------------------------------------------------------------# \n"
534	spalte1=SUBJOB;spalte2=$(date)
535	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
536	printf "\| \| \n"
537	printf "\| values of parameters/options: \| \n"
538	spalte1=$(echo local_host$punkte \| cut -c-20)
539	spalte2=$punkte$local_host
540	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
541	spalte1=$(echo remote_host$punkte \| cut -c-20)
542	spalte2=$punkte$remote_host
543	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
544	spalte1=$(echo queue$punkte \| cut -c-20)
545	spalte2=$punkte$queue
546	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
547	spalte1=$(echo memory$punkte \| cut -c-20)
548	spalte2="$punkte$memory mb"
549	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
550	spalte1=$(echo cputime$punkte \| cut -c-20)
551	spalte2="$punkte$cputime sec"
552	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
553	spalte1=$(echo job_name$punkte \| cut -c-20)
554	spalte2="$punkte$job_name"
555	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
556	printf "#--------------------------------------------------------------# \n\n"
557
558
559	# KONTROLLABFRAGE, OB ALLES O.K.
560	antwort="dummy"
561	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
562	do
563	read antwort?" >>> continue (y/n) ? "
564	done
565	if [[ $antwort = n \|\| $antwort = N ]]
566	then
567	locat=verify; exit
568	fi
569	printf "\n"
570	fi
571
572
573
574	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
575	kennung=$RANDOM
576	job_on_remhost=${job_name}_${kennung}_$local_host
577	job_to_send=job_to_send_$kennung
578	if [[ $delete_dayfile = false ]]
579	then
580	remote_dayfile=${local_host}_${job_name}_result_$kennung
581	local_dayfile=${remote_host}_${job_name}
582	else
583	remote_dayfile=/dev/null
584	fi
585
586
587
588	# Generate the batch job scripts (qsub/msub/LoadLeveler)
589	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
590	then
591
592	# General LoadLeveler settings
593	execute_in_shell="#!/bin/ksh"
594	use_shell="# @ shell = /bin/ksh"
595	consumable_memory="ConsumableMemory($memory mb)"
596	class="# @ class = $queue"
597	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
598	network_to_use="# @ network.mpi = sn_all,shared,us"
599	data_limit="# @ data_limit = 1.76gb"
600	image_size="# @ image_size = 50"
601	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
602
603	if [[ $email_notification = none ]]
604	then
605	notify_user=""
606	else
607	notify_user="# @ notify_user = $email_notification"
608	if [[ $delete_dayfile = true ]]
609	then
610	notification='# @ notification = never'
611	fi
612	fi
613
614	if [[ $remote_host = ibmh ]]
615	then
616	data_limit=""
617	network_to_use=""
618	class="# @ class = $queue"
619	environment=""
620	rset="# @ rset = RSET_MCM_AFFINITY"
621	task_affinity="# @ task_affinity = core(1)"
622	elif [[ $remote_host = ibmkisti ]]
623	then
624	network_to_use="# @ network.MPI = sn_all,shared,US"
625	wall_clock_limit="# @ wall_clock_limit = $timestring"
626	if [[ $threads_per_task = 1 ]]
627	then
628	rset="# @ rset = RSET_MCM_AFFINITY"
629	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
630	fi
631	environment=""
632	use_shell=""
633	data_limit=""
634	image_size=""
635	elif [[ $remote_host = ibmku ]]
636	then
637	execute_in_shell="#!/usr/bin/ksh"
638	use_shell="# @ shell = /usr/bin/ksh"
639	consumable_memory=""
640	environment=""
641	network_to_use="# @ network.mpi = sn_all,shared,us"
642	data_limit=""
643	image_size=""
644	elif [[ $remote_host = ibms ]]
645	then
646	network_to_use="# @ network.mpi = csss,shared,us"
647	elif [[ $remote_host = ibmy ]]
648	then
649	consumable_memory=""
650	network_to_use=""
651	fi
652
653	cat > $job_to_send << %%END%%
654	$execute_in_shell
655	$use_shell
656
657	# @ job_type = parallel
658	# @ job_name = $job_name
659	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
660	# @ output = $remote_dayfile
661	# @ error = $remote_dayfile
662	$wall_clock_limit
663	$image_size
664	$class
665	$environment
666	$network_to_use
667	$data_limit
668	$rset
669	$mcm_affinity_options
670	$task_affinity
671	$notification
672	$notify_user
673
674	%%END%%
675
676	if (( nodes > 0 ))
677	then
678
679	if [[ $remote_host != ibmkisti ]]
680	then
681
682	cat >> $job_to_send << %%END%%
683	# @ node = $nodes
684	# @ tasks_per_node = $processes_per_node
685	# @ node_usage = $node_usage
686	# @ queue
687
688	%%END%%
689
690	else
691
692	cat >> $job_to_send << %%END%%
693	# @ total_tasks = $mpi_tasks
694	# @ blocking = unlimited
695	# @ queue
696
697	%%END%%
698
699	fi
700
701	else
702
703	if [[ $remote_host != ibmy ]]
704	then
705
706	cat >> $job_to_send << %%END%%
707	# @ blocking = unlimited
708	# @ total_tasks = $numprocs
709	# @ node_usage = $node_usage
710	# @ queue
711
712	%%END%%
713
714	else
715
716	cat >> $job_to_send << %%END%%
717	# @ node = 1
718	# @ total_tasks = $numprocs
719	# @ queue
720
721	%%END%%
722
723	fi
724
725	fi
726
727	# workaround because of silly job filter on ibmkisti
728	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
729	then
730	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
731	fi
732
733	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
734	then
735
736	cat > $job_to_send << %%END%%
737	#!/bin/ksh
738
739	# @ job_type = serial
740	# @ node_usage = $node_usage
741	# @ job_name = palm
742	# @ wall_clock_limit = ${timestring},$timestring
743	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
744	# @ output = $remote_dayfile
745	# @ error = $remote_dayfile
746	$class
747	$notification
748
749	# @ queue
750
751	%%END%%
752
753	elif [[ $remote_host = lcfimm ]]
754	then
755
756	if [[ $numprocs != 0 ]]
757	then
758	cat > $job_to_send << %%END%%
759	#!/bin/ksh
760	#PBS -N $job_name
761	#PBS -A $project_account
762	#PBS -l walltime=$timestring
763	#PBS -l nodes=${nodes}:ppn=$processes_per_node
764	#PBS -l pmem=${memory}mb
765	#PBS -m abe
766	#PBS -o $remote_dayfile
767	#PBS -j oe
768	mpd &
769
770	%%END%%
771
772	else
773	cat > $job_to_send << %%END%%
774	#!/bin/ksh
775	#PBS -N $job_name
776	#PBS -A $project_account
777	#PBS -l walltime=$timestring
778	#PBS -l ncpus=1
779	#PBS -l pmem=${memory}mb
780	#PBS -m abe
781	#PBS -o $remote_dayfile
782	#PBS -j oe
783
784	%%END%%
785
786	fi
787
788	elif [[ $remote_host = lcflow ]]
789	then
790	if [ $memory -gt 1900 ]; then
791	use_himem=""
792	else
793	use_himem="#"
794	fi
795	if [[ $numprocs != 0 ]]
796	then
797	pe_set="#$ -pe impi $numprocs"
798	else
799	pe_set="#$ -pe impi 1"
800	fi
801	if [[ $queue = default ]]
802	then
803	queue_set=""
804	else
805	queue_set="#$ -q $queue"
806	fi
807	[[ "$disc_space" = "" ]] && disc_space=50
808
809	cat > $job_to_send << %%END%%
810	#!/bin/bash
811	#$ -S /bin/bash
812	#$ -N $job_name
813	#$ -cwd
814	#$ -l h_rt=$timestring
815	#$ -l h_vmem=${memory}M
816	#$ -o $remote_dayfile
817	#$ -j y
818	$pe_set
819	#$ -R y
820	${use_himem}#$ -l highmem=true
821	#$ -l h_fsize=${disc_space}G
822	$queue_set
823
824	%%END%%
825
826	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
827	then
828
829	if [[ $numprocs != 0 ]]
830	then
831	cat > $job_to_send << %%END%%
832	#!/bin/ksh
833	#PBS -N $job_name
834	#PBS -l walltime=$timestring
835	#PBS -l ncpus=$numprocs
836	#PBS -l pmem=${memory}mb
837	#PBS -o $remote_dayfile
838	#PBS -l nodes=$nodes:ppn=${processes_per_node}
839	#PBS -j oe
840
841	mpd &
842
843	%%END%%
844
845	else
846	cat > $job_to_send << %%END%%
847	#!/bin/ksh
848	#PBS -N $job_name
849	#PBS -l walltime=$timestring
850	#PBS -l ncpus=1
851	#PBS -l pmem=${memory}mb
852	#PBS -o $remote_dayfile
853	#PBS -j oe
854
855	%%END%%
856
857	fi
858
859	elif [[ $remote_host = lckiaps ]]
860	then
861
862	if [[ $numprocs != 0 ]]
863	then
864	cat > $job_to_send << %%END%%
865	#!/bin/ksh
866	#PBS -N $job_name
867	#PBS -l walltime=$timestring
868	#PBS -l select=1:ncpus=$numprocs
869	#PBS -l pmem=${memory}mb
870	#PBS -q $queue
871	#PBS -o $remote_dayfile
872	#PBS -j oe
873	#PBS -V
874
875	%%END%%
876
877	else
878	cat > $job_to_send << %%END%%
879	#!/bin/ksh
880	#PBS -N $job_name
881	#PBS -l walltime=$timestring
882	#PBS -l ncpus=1
883	#PBS -l pmem=${memory}mb
884	#PBS -o $remote_dayfile
885	#PBS -j oe
886
887	%%END%%
888
889	fi
890
891	elif [[ $remote_host = lcyon ]]
892	then
893
894	if [[ $numprocs != 0 ]]
895	then
896	cat > $job_to_send << %%END%%
897	#!/bin/ksh
898	#PBS -N $job_name
899	#PBS -l walltime=$timestring
900	#PBS -l ncpus=$numprocs
901	#PBS -l pmem=${memory}mb
902	#PBS -o $remote_dayfile
903	#PBS -j oe
904
905	%%END%%
906
907	else
908	cat > $job_to_send << %%END%%
909	#!/bin/ksh
910	#PBS -N $job_name
911	#PBS -l walltime=$timestring
912	#PBS -l ncpus=1
913	#PBS -l pmem=${memory}mb
914	#PBS -o $remote_dayfile
915	#PBS -j oe
916
917	%%END%%
918
919	fi
920
921	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
922	then
923
924	if [[ "$sgi_feature" != "" ]]
925	then
926	feature_directive="#PBS -l feature=$sgi_feature"
927	else
928	feature_directive=""
929	fi
930
931	if [[ $queue = dataq \|\| $queue = permq ]]
932	then
933	feature_directive="#PBS -l feature=data"
934	fi
935
936	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
937	then
938	queue_directive="#PBS -q $queue"
939	else
940	queue_directive=""
941	fi
942
943	if [[ $email_notification = none ]]
944	then
945	email_directive=""
946	else
947	email_directive="#PBS -M $email_notification"
948	fi
949
950	if [[ $numprocs != 0 ]]
951	then
952	cat > $job_to_send << %%END%%
953	#!/bin/bash
954	#PBS -N $job_name
955	#PBS -l walltime=$timestring
956	#PBS -l nodes=$nodes:ppn=${processes_per_node}
957	#PBS -l naccesspolicy=$node_usage
958	#PBS -o $remote_dayfile
959	#PBS -j oe
960	$feature_directive
961	$queue_directive
962	$email_directive
963
964	eval \`/sw/swdist/bin/modulesinit\`
965	#. /usr/share/modules/init/bash
966	$init_cmds
967	$module_calls
968
969	echo ld_library_path=\$LD_LIBRARY_PATH
970
971	%%END%%
972
973	else
974	cat > $job_to_send << %%END%%
975	#PBS -S /bin/bash
976	#PBS -N $job_name
977	#PBS -l walltime=$timestring
978	#PBS -l ncpus=1
979	#PBS -o $remote_dayfile
980	#PBS -j oe
981	$queue_directive
982	$email_directive
983
984	eval \`/sw/swdist/bin/modulesinit\`
985	#. /usr/share/modules/init/bash
986	$init_cmds
987	$module_calls
988
989	%%END%%
990
991	fi
992
993	elif [[ $remote_host = lcxe6 ]]
994	then
995
996	if [[ $numprocs != 0 ]]
997	then
998	cat > $job_to_send << %%END%%
999	#!/bin/ksh
1000	#PBS -S /bin/ksh
1001	#PBS -N $job_name
1002	#PBS -A $project_account
1003	#PBS -j oe
1004	#PBS -l walltime=$timestring
1005	#PBS -l mppwidth=${numprocs}
1006	#PBS -l mppnppn=${processes_per_node}
1007	#PBS -m abe
1008	#PBS -o $remote_dayfile
1009	$email_directive
1010
1011	$init_cmds
1012	$module_calls
1013
1014	%%END%%
1015
1016	else
1017	cat > $job_to_send << %%END%%
1018	#!/bin/ksh
1019	#PBS -S /bin/ksh
1020	#PBS -N $job_name
1021	#PBS -A $project_account
1022	#PBS -j oe
1023	#PBS -l walltime=$timestring
1024	#PBS -l ncpus=1
1025	#PBS -l pmem=${memory}mb
1026	#PBS -m abe
1027	$email_directive
1028	#PBS -o $remote_dayfile
1029
1030	$init_cmds
1031	$module_calls
1032
1033	%%END%%
1034
1035	fi
1036
1037	elif [[ $remote_host = lckyoto ]]
1038	then
1039
1040	cat > $job_to_send << %%END%%
1041	#!/bin/ksh
1042	# @\$-o $remote_dayfile
1043	# @\$-eo -oi
1044	# @\$-lP 16
1045	# @\$-lp 1
1046	# @\$-lm 28gb -llm unlimited -ls unlimited
1047	# @\$-q $queue
1048	# @\$-Pvn abs_pack
1049	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1050	#. /thin/local/etc/setprofile/intel-11.0.sh
1051	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1052	. ~/.myprofile
1053	#. /home2/t/t51254/palm/current_version/myprofile
1054	#. /thin/apps/pgi/mpi.sh
1055	#
1056	env
1057	#
1058	set -x
1059
1060	%%END%%
1061
1062	elif [[ $remote_host = lcxt5m ]]
1063	then
1064
1065	if [[ $numprocs != 0 ]]
1066	then
1067	cat > $job_to_send << %%END%%
1068	#!/bin/ksh
1069	#PBS -S /bin/ksh
1070	#PBS -N $job_name
1071	#PBS -j oe
1072	#PBS -l walltime=$timestring
1073	#PBS -l mppwidth=${numprocs}
1074	#PBS -l mppnppn=${processes_per_node}
1075	#PBS -m abe
1076	#PBS -o $remote_dayfile
1077
1078	$init_cmds
1079	$module_calls
1080
1081	%%END%%
1082
1083	else
1084	cat > $job_to_send << %%END%%
1085	#!/bin/ksh
1086	#PBS -S /bin/ksh
1087	#PBS -N $job_name
1088	#PBS -j oe
1089	#PBS -l walltime=$timestring
1090	#PBS -l ncpus=1
1091	#PBS -l pmem=${memory}mb
1092	#PBS -m abe
1093	#PBS -o $remote_dayfile
1094
1095	$init_cmds
1096	$module_calls
1097
1098	%%END%%
1099
1100	fi
1101
1102	elif [[ $remote_host = lckyuh ]]
1103	then
1104	cat > $job_to_send << %%END%%
1105	#!/bin/bash
1106	#PJM -L "rscgrp=$queue"
1107	#PJM -L "node=$nodes"
1108	#PJM --mpi "proc=$numprocs"
1109	#PJM -L "elapse=$timestring"
1110	#PJM -o $remote_dayfile
1111	#PJM -j
1112	#PJM -X
1113	#PJM --no-stging
1114
1115	export LANG=en_US.UTF-8
1116	%%END%%
1117
1118	elif [[ $remote_host = lckyut ]]
1119	then
1120	cat > $job_to_send << %%END%%
1121	#!/bin/bash
1122	#PJM -L "rscgrp=$queue"
1123	#PJM -L "vnode=$numprocs"
1124	#PJM -L "vnode-core=1"
1125	#PJM -L "elapse=$timestring"
1126	#PJM --mpi proc=$numprocs
1127	#PJM -o $remote_dayfile
1128	#PJM -j
1129	#PJM -X
1130	#PJM --no-stging
1131
1132	export LANG=en_US.UTF-8
1133	%%END%%
1134
1135	elif [[ $remote_host = nech ]]
1136	then
1137
1138	if (( nodes > 1 ))
1139	then
1140	cat > $job_to_send << %%END%%
1141	#!/bin/ksh
1142	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1143	#PBS -l ${qsubmem}=${Memory}gb
1144	#PBS -b $nodes
1145	#PBS -o $remote_dayfile
1146	#PBS -N palm
1147	#PBS -j o
1148	#PBS -T mpisx
1149
1150	%%END%%
1151
1152	elif [[ $numprocs != 0 ]]
1153	then
1154	cat > $job_to_send << %%END%%
1155	#!/bin/ksh
1156	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1157	#PBS -l ${qsubmem}=${Memory}gb
1158	#PBS -o $remote_dayfile
1159	#PBS -N palm
1160	#PBS -j o
1161
1162	%%END%%
1163
1164	else
1165	cat > $job_to_send << %%END%%
1166	#!/bin/ksh
1167	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1168	#PBS -o $remote_dayfile
1169	#PBS -j o
1170
1171	%%END%%
1172
1173	fi
1174
1175	elif [[ $remote_host = necriam ]]
1176	then
1177
1178	if (( nodes > 1 ))
1179	then
1180	cat > $job_to_send << %%END%%
1181	#!/bin/ksh
1182	#PBS -b $nodes
1183	#PBS -o $remote_dayfile
1184	#PBS -N $job_name
1185	#PBS -j o
1186	#PBS -v MPIPROGINV=YES
1187
1188	%%END%%
1189
1190	elif [[ $numprocs != 0 ]]
1191	then
1192	cat > $job_to_send << %%END%%
1193	#!/bin/ksh
1194	#PBS -q ${queue}
1195	#PBS -o $remote_dayfile
1196	#PBS -N $job_name
1197	#PBS -j o
1198	#PBS -v MPIPROGINV=YES
1199
1200	%%END%%
1201
1202	else
1203	cat > $job_to_send << %%END%%
1204	#!/bin/ksh
1205	#PBS -o $remote_dayfile
1206	#PBS -j o
1207
1208	%%END%%
1209
1210	fi
1211
1212	elif [[ $remote_host = lctit ]]
1213	then
1214	cat > $job_to_send << %%END%%
1215	#!/bin/ksh
1216	$init_cmds
1217	$module_calls
1218
1219	%%END%%
1220
1221	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1222	if [[ $tasks_per_node != $processes_per_node ]]
1223	then
1224	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1225	else
1226	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1227	fi
1228
1229	else
1230
1231	cat > $job_to_send << %%END%%
1232	# @\$-q ${queue}
1233	# @\$-l${qsubtime} $timestring
1234	# @\$-l${qsubmem} ${memory}mb
1235	# @\$-o $remote_dayfile
1236	# @\$-eo
1237
1238	%%END%%
1239
1240	fi
1241
1242
1243	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1244	# BEI EXIT VERANLASSEN
1245	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1246	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1247	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1248	then
1249	echo "set +vx" >> $job_to_send
1250	echo "trap '" >> $job_to_send
1251	echo "set +vx" >> $job_to_send
1252	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1253	then
1254	if [[ $remote_host = ibmh ]]
1255	then
1256	return_queue=c1
1257	elif [[ $remote_host = ibmkisti ]]
1258	then
1259	return_queue=class.1-2
1260	elif [[ $remote_host = ibmku ]]
1261	then
1262	return_queue=sdbg2
1263	elif [[ $remote_host = ibms ]]
1264	then
1265	return_queue=p_normal
1266	elif [[ $remote_host = ibmy ]]
1267	then
1268	return_queue=serial
1269	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1270	then
1271	return_queue=serialq
1272	elif [[ $remote_host = necriam ]]
1273	then
1274	return_queue=SP
1275	elif [[ $remote_host = lckiaps ]]
1276	then
1277	return_queue=express
1278	elif [[ $remote_host = lckyuh ]]
1279	then
1280	return_queue=cx-single
1281	elif [[ $remote_host = lckyut ]]
1282	then
1283	return_queue=cx-single
1284	else
1285	return_queue=unknown
1286	fi
1287
1288	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1289	then
1290
1291	if [[ $remote_host = ibmku ]]
1292	then
1293	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1294	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1295	else
1296	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1297	fi
1298	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1299	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1300	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1301	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1302	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1303	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1304	if [[ $host != "ibmh" ]]
1305	then
1306	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1307	fi
1308	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1309	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1310
1311	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1312	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1313
1314	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1315	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1316	if [[ $remote_host = ibmku ]]
1317	then
1318	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1319	fi
1320	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1321
1322	elif [[ $remote_host = nech ]]
1323	then
1324	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1325	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1326	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1327	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1328	echo "#PBS -j o" >> $job_to_send
1329	echo " " >> $job_to_send
1330	echo "set -x" >> $job_to_send
1331	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1332	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1333	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1334	echo "%%END%%" >> $job_to_send
1335
1336	elif [[ $remote_host = necriam ]]
1337	then
1338	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1339	echo "#PBS -q $return_queue" >> $job_to_send
1340	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1341	echo "#PBS -j o" >> $job_to_send
1342	echo " " >> $job_to_send
1343	echo "set -x" >> $job_to_send
1344	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1345	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1346	echo "%%END%%" >> $job_to_send
1347
1348	elif [[ $remote_host = lckyuh ]]
1349	then
1350	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1351	echo "#!/bin/bash" >> $job_to_send
1352	echo "#PJM -L \"node=1\"" >> $job_to_send
1353	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1354	echo "#PJM --no-stging" >> $job_to_send
1355	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1356	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1357	echo "#PJM -j" >> $job_to_send
1358	echo " " >> $job_to_send
1359	echo "export LANG=en_US.UTF-8" >> $job_to_send
1360	echo "set -x" >> $job_to_send
1361	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1362	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1363	echo "%%END%%" >> $job_to_send
1364
1365	elif [[ $remote_host = lckyut ]]
1366	then
1367	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1368	echo "#!/bin/bash" >> $job_to_send
1369	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1370	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1371	echo "#PJM --no-stging" >> $job_to_send
1372	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1373	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1374	echo "#PJM -j" >> $job_to_send
1375	echo " " >> $job_to_send
1376	echo "export LANG=en_US.UTF-8" >> $job_to_send
1377	echo "set -x" >> $job_to_send
1378	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1379	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1380	echo "%%END%%" >> $job_to_send
1381
1382	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1383	then
1384	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1385	echo "#!/bin/bash" >> $job_to_send
1386	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1387	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1388	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1389	echo "#PBS -l feature=data" >> $job_to_send
1390	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1391	echo "#PBS -j oe" >> $job_to_send
1392	echo " " >> $job_to_send
1393	echo ". /usr/share/modules/init/bash" >> $job_to_send
1394	echo "set -x" >> $job_to_send
1395	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1396	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1397	echo "%%END%%" >> $job_to_send
1398
1399	elif [[ $remote_host = lcflow ]]
1400	then
1401	echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send
1402	echo "#!/bin/bash" >> $job_to_send
1403	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1404	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1405	echo "SGEPREFIX -cwd" >> $job_to_send
1406	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1407	echo "SGEPREFIX -l h_vmem=100M" >> $job_to_send
1408	echo "SGEPREFIX -j y" >> $job_to_send
1409	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send
1410	echo " " >> $job_to_send
1411	echo "set -x" >> $job_to_send
1412	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1413	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1414	echo "" >> $job_to_send
1415	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1416	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1417	echo "rm -f scpjob.${kennung}" >> $job_to_send
1418	echo "%%END%%" >> $job_to_send
1419	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send
1420	echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send
1421
1422	else
1423
1424	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1425	echo "# @\\\$-q $return_queue" >> $job_to_send
1426	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1427	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1428	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1429	then
1430	echo "# @\$-l mpp_p=0" >> $job_to_send
1431	fi
1432	echo '# @\$-lF 10mb' >> $job_to_send
1433	# echo '# @\$-o /dev/null' >> $job_to_send
1434	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1435	echo '# @\\\$-eo' >> $job_to_send
1436	echo " " >> $job_to_send
1437	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1438	then
1439	echo "set +vx" >> $job_to_send
1440	echo ". .profile" >> $job_to_send
1441	fi
1442	echo "set -x" >> $job_to_send
1443	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1444	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1445	echo "%%END%%" >> $job_to_send
1446	fi
1447
1448	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1449	then
1450	echo "llsubmit scpjob.$kennung" >> $job_to_send
1451	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1452	then
1453	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1454	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1455	echo "msub scpjob.$kennung" >> $job_to_send
1456	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1457	then
1458	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1459	elif [[ $remote_host = t3es ]]
1460	then
1461	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1462	elif [[ $remote_host = lckiaps ]]
1463	then
1464	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1465	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
1466	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
1467	elif [[ $remote_host = lckyu* ]]
1468	then
1469	echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1470	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
1471	elif [[ $remote_host = lcflow ]]
1472	then
1473	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1474	echo "ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send
1475	else
1476	echo "$submcom scpjob.$kennung" >> $job_to_send
1477	fi
1478	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1479	then
1480	echo "rm scpjob.$kennung" >> $job_to_send
1481	fi
1482	if [[ $remote_host = nech ]]
1483	then
1484	echo "cd -" >> $job_to_send
1485	fi
1486	else
1487	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1488	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1489	fi
1490	echo "set -x" >> $job_to_send
1491	echo " ' exit" >> $job_to_send
1492	echo "set -x" >> $job_to_send
1493	fi
1494
1495
1496
1497	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1498	cat $file_to_send >> $job_to_send
1499
1500	if [[ $remote_host = ibm ]]
1501	then
1502	echo " " >> $job_to_send
1503	echo "exit" >> $job_to_send
1504	fi
1505
1506	# remove job file
1507	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1508	then
1509	echo " " >> $job_to_send
1510	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1511	fi
1512
1513
1514
1515	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1516	if [[ -z $remote_user ]]
1517	then
1518	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1519	then
1520	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1521	fi
1522	fi
1523
1524
1525
1526	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1527	if [[ $no_submit = false ]]
1528	then
1529	if [[ $remote_host != $local_host ]]
1530	then
1531	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1532	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1533	then
1534	job_catalog_save=$job_catalog
1535	job_catalog=job_queue
1536	elif [[ $remote_host = nech ]]
1537	then
1538	job_catalog_save=$job_catalog
1539	job_catalog=/hpf/b/${remote_user}/job_queue
1540	fi
1541	if [[ $remote_host = nech ]]
1542	then
1543	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1544	# TRANSFERIERT WERDEN
1545	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1546	else
1547	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1548	fi
1549	if [[ $? = 1 ]]
1550	then
1551	locat=scp; exit
1552	fi
1553	if [[ $remote_host = ibms ]]
1554	then
1555	job_catalog=$job_catalog_save
1556	fi
1557	[[ $verify = true ]] && printf "\n >>> finished\n"
1558	else
1559	eval job_catalog=$job_catalog
1560	cp $job_to_send ${job_catalog}/$job_on_remhost
1561	fi
1562
1563
1564
1565	# NQS- BZW. LOADLEVELER-JOB STARTEN
1566	if [[ $remote_host != $local_host ]]
1567	then
1568	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1569
1570	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1571	then
1572	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1573	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1574	elif [[ $remote_host = ibmku ]]
1575	then
1576	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1577	elif [[ $remote_host = lcflow ]]
1578	then
1579	ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1580	else
1581	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1582	fi
1583
1584	[[ $verify = true ]] && printf " >>> o.k.\n"
1585	else
1586	cd $job_catalog
1587	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1588	then
1589	eval $submcom $job_on_remhost
1590	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1591	then
1592	chmod u+x $job_on_remhost
1593	eval $submcom $job_on_remhost
1594	elif [[ $local_host = nech ]]
1595	then
1596	if [[ $queue = default ]]
1597	then
1598	eval $submcom $job_on_remhost
1599	else
1600	eval $submcom -q $queue $job_on_remhost
1601	fi
1602	else
1603	qsub $job_on_remhost
1604	fi
1605
1606	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1607	# only at the end of the job.
1608	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1609	then
1610	rm $job_on_remhost
1611	fi
1612	cd - > /dev/null
1613	fi
1614	fi
1615
1616
1617
1618	# ABSCHLUSSARBEITEN
1619
1620	if [[ $no_submit = false ]]
1621	then
1622	rm -f $job_to_send
1623	fi
1624	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |