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source: palm/trunk/SCRIPTS/subjob @ 1184

Last change on this file since 1184 was 1184, checked in by heinze, 11 years ago
adjustments for ibmh concerning explicit use of queues cluster and express
Property svn:keywords set to `Id Rev`
File size: 54.3 KB

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1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	# use of cluster/express queue enabled(ibmh)
26	# vinessa added (imuk)
27	#
28	# Former revisions:
29	# -----------------
30	# $Id: subjob 1184 2013-06-17 14:06:44Z heinze $
31	#
32	# 1103 2013-02-20 02:15:53Z raasch
33	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
34	# instead typeset -L/R),
35	# further adjustments for lckyuh
36	#
37	# 2013-02-10 01:47:43Z raasch
38	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
39	# and for Forwind cluster (lcflow)
40	#
41	# 1094 2013-02-03 01:52:12Z raasch
42	# new option -P for explicit setting of ssh/scp port,
43	# decalpha parts (yonsei) removed
44	#
45	# 2013-02-02 07:06:13Z raasch
46	# adjustments for Kyushu-University computing center (lckyut - tatara)
47	# old changelog messages removed
48	#
49	# 1046 2012-11-09 14:38:45Z maronga
50	# code put under GPL (PALM 3.9)
51	#
52	# 08/07/94 - Siggi - first version finished
53	# 29/06/94 - Siggi - script development started
54	#--------------------------------------------------------------------------------#
55	# subjob - script for automatic generation and submission of batch-job files
56	# for various batch queuing systems
57	#--------------------------------------------------------------------------------#
58
59
60	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
61	delete_dayfile=false
62	email_notification=none
63	group_number=none
64	locat=normal
65	no_default_queue=none
66	no_submit=false
67	job_catalog="~/job_queue"
68	job_name=none
69	local_user=$LOGNAME
70	node_usage=shared
71	numprocs=0
72	punkte="..........................................................."
73	submcom=qsub
74	queue=default
75	remote_host=none
76	remote_user=""
77	verify=true
78
79	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
80	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
81
82
83
84	# FEHLERBEHANDLUNG
85	# BEI EXIT:
86	trap 'if [[ $locat != normal ]]
87	then
88	case $locat in
89	(option) printf "\n --> available optios can be displayed"
90	printf " by typing:"
91	printf "\n \"subjob ?\" \n";;
92	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
93	(*) printf "\n +++ unknown error"
94	printf "\n please inform S. Raasch!\n"
95	esac
96	[[ -f $job_to_send ]] && rm $job_to_send
97	printf "\n\n+++ SUBJOB killed \n\n"
98	fi' exit
99
100
101	# BEI TERMINAL-BREAK:
102	trap '[[ -f $job_to_send ]] && rm $job_to_send
103	printf "\n\n+++ SUBJOB killed \n\n"
104	exit
105	' 2
106
107
108
109
110	# LOKALEN HOSTNAMEN FESTSTELLEN
111	local_host=$(hostname)
112
113
114
115	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
116	# UEBERHAUPT ZULAESSIG IST
117	# Note: One of the entries for "lck" or "lckordi" always has to be
118	# comment out, because the hostname (node*) is same for both machines
119	case $local_host in
120	(atmos) local_addres=172.20.25.35; local_host=lcide;;
121	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
122	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
123	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
124	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
125	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
126	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
127	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
128	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
129	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
130	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
131	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
132	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
133	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
134	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
135	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
136	(cs*) local_addres=136.172.44.131; local_host=nech;;
137	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
138	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
139	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
140	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
141	(node*) local_addres=165.132.26.61 local_host=lck;;
142	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
143	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
144	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
145	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
146	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
147	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
148	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
149	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
150	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
151	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
152	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
153	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
154	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
155	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
156	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
157	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
158	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
159	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
160	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
161	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
162	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
163	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
164	(meller) local_addres=134.106.74.155; local_host=lcfor;;
165	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
166	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
167	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
168	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
169	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
170	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
171	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
172	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
173	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
174	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
175	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
176	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
177	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
178	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
179	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
180	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
181	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
182	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
183	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
184	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
185	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
186	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
187	(*) printf "\n +++ \"$local_host\" unknown";
188	printf "\n please inform S. Raasch!";
189	locat=parameter; exit;;
190	esac
191
192
193
194	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
195	remote_host=$local_host
196
197
198
199
200	# PROZEDUROPTIONEN EINLESEN
201	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
202	do
203	case $option in
204	(c) job_catalog=$OPTARG;;
205	(d) delete_dayfile=true;;
206	(D) no_submit=true;;
207	(e) email_notification=$OPTARG;;
208	(g) group_number=$OPTARG;;
209	(h) remote_host=$OPTARG;;
210	(m) memory=$OPTARG;;
211	(n) job_name=$OPTARG;;
212	(N) node_usage=$OPTARG;;
213	(O) threads_per_task=$OPTARG;;
214	(P) scp_port=$OPTARG;;
215	(q) no_default_queue=$OPTARG;;
216	(t) cputime=$OPTARG;;
217	(T) tasks_per_node=$OPTARG;;
218	(u) remote_user=$OPTARG;;
219	(v) verify=false;;
220	(X) numprocs=$OPTARG;;
221	(\?) printf "\n +++ Option $OPTARG unknown \n";
222	locat=option; exit;;
223	esac
224	done
225
226
227	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
228	(( to_shift = $OPTIND - 1 ))
229	shift $to_shift; file_to_send=$1
230
231
232	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
233	if [ "$1" = "?" ]
234	then
235	(printf "\n *** subjob can be called as follows:\n"
236	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
237	printf "\n Description of available options:\n"
238	printf "\n Option Description Default-Value"
239	printf "\n -c job-input- and output-catalog ~/job_queue"
240	printf "\n -d no job-protocol will be created ---"
241	printf "\n -D only the job-file will be created ---"
242	printf "\n -h execution host, available hosts: $remote_host"
243	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
244	printf "\n lckiaps, lctit, nech, necriam, unics"
245	printf "\n -m memory demand per process in MByte ---"
246	printf "\n -n jobname <jobdatei>"
247	printf "\n -O threads per task (for OpenMP usage) 1"
248	printf "\n -P ssh/scp port default port"
249	printf "\n -q job-queue to be used default"
250	printf "\n -t allowed cpu-time in seconds ---"
251	printf "\n -T tasks per node (on parallel hosts) ---"
252	printf "\n -u username on execution host from .netrc"
253	printf "\n -v no prompt for confirmation ---"
254	printf "\n -X # of processors (on parallel hosts) 1"
255	printf "\n "
256	printf "\n The only possible positional parameter is <jobfile>:"
257	printf "\n The complete NQS-job must be provided here."
258	printf "\n <jobfile>=? creates this outline\n\n") \| more
259	exit
260	fi
261
262
263
264	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
265	if [[ "$file_to_send" = "" ]]
266	then
267	printf "\n +++ job-file missing"
268	locat=parameter; exit
269	else
270	if [[ -f $file_to_send ]]
271	then
272	true
273	else
274	printf "\n +++ job-file: "
275	printf "\n $file_to_send"
276	printf "\n does not exist"
277	locat=parameter; exit
278	fi
279	fi
280
281
282
283	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
284	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
285	if [[ $job_name = none ]]
286	then
287	job_name=$file_to_send
288	fi
289	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
290	then
291	printf "\n +++ job-file name: "
292	printf "\n $job_name"
293	printf "\n must not contain \"/\"-characters"
294	locat=parameter; exit
295	fi
296
297
298
299
300	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
301	# ODER WENN HOST NICHT ANGEGEBEN WURDE
302	if [[ $remote_host = none ]]
303	then
304	printf "\n +++ host missing"
305	locat=option; exit
306	else
307	case $remote_host in
308	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
309	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
310	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
311	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
312	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
313	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
314	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
315	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
316	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
317	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
318	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
319	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
320	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
321	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
322	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
323	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
324	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
325	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
326	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
327	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
328	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
329	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
330	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
331	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
332	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
333	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
334	locat=parameter; exit;;
335	esac
336	fi
337
338
339	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
340	if [[ $no_default_queue != none ]]
341	then
342	error=false
343	ndq=$no_default_queue
344	case $remote_host in
345	(ibm) case $ndq in
346	(p690_express\|p690_standard\|p690_long) error=false;;
347	(*) error=true;;
348	esac;;
349	(ibmh) case $ndq in
350	(cluster\|express) error=false;;
351	(*) error=true;;
352	esac;;
353	(ibmkisti) case $ndq in
354	(class.32plus\|class.1-2\|class.2-32) error=false;;
355	(*) error=true;;
356	esac;;
357	(ibmku) case $ndq in
358	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
359	(*) error=true;;
360	esac;;
361	(ibms) case $ndq in
362	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
363	(*) error=true;;
364	esac;;
365	(ibmy) case $ndq in
366	(parallel) error=false;;
367	(*) error=true;;
368	esac;;
369	(lcflow) case $ndq in
370	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
371	(*) error=true;;
372	esac;;
373	(lckiaps) case $ndq in
374	(express\|normal) error=false;;
375	(*) error=true;;
376	esac;;
377	(lckyoto) case $ndq in
378	(eh\|ph) error=false;;
379	(*) error=true;;
380	esac;;
381	(lckyuh) case $ndq in
382	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
383	(*) error=true;;
384	esac;;
385	(lckyut) case $ndq in
386	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
387	(*) error=true;;
388	esac;;
389	(lcsgib\|lcsgih) case $ndq in
390	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
391	(*) error=true;;
392	esac;;
393	(lctit) case $ndq in
394	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
395	(*) error=true;;
396	esac;;
397	(t3eb) case $ndq in
398	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
399	(*) error=true;;
400	esac;;
401	(necriam) case $ndq in
402	(SP\|SS\|P6) error=false;;
403	(*) error=true;;
404	esac;;
405	(t3eh) case $ndq in
406	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
407	(*) error=true;;
408	esac;;
409	(t3ej2\|t3ej5) case $ndq in
410	(low\|normal\|high) error=false;;
411	(*) error=true;;
412	esac;;
413	(t3es) case $ndq in
414	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
415	(*) error=true;;
416	esac;;
417	(unics) case $ndq in
418	(unics\|ht) error=false;;
419	(*) error=true;;
420	esac;;
421	esac
422	if [[ $error = true ]]
423	then
424	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
425	locat=parameter; exit
426	else
427	queue=$no_default_queue
428	fi
429	fi
430
431
432
433	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
434	# AUFTEILEN
435	done=false
436	while [[ $done = false ]]
437	do
438	if (( $cputime <= 0 ))
439	then
440	printf "\n +++ wrong cpu-time or cpu-time missing"
441	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
442	printf "\n >>> "
443	read cputime 1>/dev/null 2>&1
444	else
445	done=true
446	fi
447	done
448	if [[ $remote_host = nech ]]
449	then
450	if (( tasks_per_node != 0 ))
451	then
452	(( cputime = cputime * tasks_per_node ))
453	elif [[ $numprocs != 0 ]]
454	then
455	(( cputime = cputime * numprocs ))
456	fi
457	fi
458	(( stunden = cputime / 3600 ))
459	(( resttime = cputime - stunden * 3600 ))
460	(( minuten = resttime / 60 ))
461	(( sekunden = resttime - minuten * 60 ))
462	timestring=${stunden}:${minuten}:${sekunden}
463
464
465
466	# PRUEFEN DER KERNSPEICHERANFORDERUNG
467	done=false
468	while [[ $done = false ]]
469	do
470	if (( memory <= 0 ))
471	then
472	printf "\n +++ wrong memory demand or memory demand missing"
473	printf "\n >>> Please type memory in MByte per process as INTEGER:"
474	printf "\n >>> "
475	read memory 1>/dev/null 2>&1
476	else
477	done=true
478	fi
479	done
480
481	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
482	then
483	if (( tasks_per_node != 0 ))
484	then
485	(( Memory = memory * tasks_per_node / 1000 ))
486	elif [[ $numprocs != 0 ]]
487	then
488	(( Memory = memory * numprocs / 1000 ))
489	else
490	(( Memory = memory / 1000 ))
491	fi
492	elif [[ $remote_host = lctit ]]
493	then
494	(( Memory = memory * tasks_per_node / 1000 ))
495	fi
496
497
498	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
499	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
500	then
501	(( memory = memory * threads_per_task ))
502	fi
503
504
505	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
506	if (( tasks_per_node != 0 ))
507	then
508	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
509	fi
510
511
512	# Calculate number of processes per node
513	(( processes_per_node = tasks_per_node * threads_per_task ))
514
515
516	# Calculate number of MPI tasks
517	(( mpi_tasks = numprocs / threads_per_task ))
518
519
520	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
521	if [[ "$scp_port" != "" ]]
522	then
523	PORTOPT="-P $scp_port"
524	SSH_PORTOPT="-p $scp_port"
525	fi
526
527
528	# HEADER-AUSGABE
529	if [[ $verify = true ]]
530	then
531	printf "\n\n"
532	printf "#--------------------------------------------------------------# \n"
533	spalte1=SUBJOB;spalte2=$(date)
534	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
535	printf "\| \| \n"
536	printf "\| values of parameters/options: \| \n"
537	spalte1=$(echo local_host$punkte \| cut -c-20)
538	spalte2=$punkte$local_host
539	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
540	spalte1=$(echo remote_host$punkte \| cut -c-20)
541	spalte2=$punkte$remote_host
542	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
543	spalte1=$(echo queue$punkte \| cut -c-20)
544	spalte2=$punkte$queue
545	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
546	spalte1=$(echo memory$punkte \| cut -c-20)
547	spalte2="$punkte$memory mb"
548	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
549	spalte1=$(echo cputime$punkte \| cut -c-20)
550	spalte2="$punkte$cputime sec"
551	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
552	spalte1=$(echo job_name$punkte \| cut -c-20)
553	spalte2="$punkte$job_name"
554	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
555	printf "#--------------------------------------------------------------# \n\n"
556
557
558	# KONTROLLABFRAGE, OB ALLES O.K.
559	antwort="dummy"
560	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
561	do
562	read antwort?" >>> continue (y/n) ? "
563	done
564	if [[ $antwort = n \|\| $antwort = N ]]
565	then
566	locat=verify; exit
567	fi
568	printf "\n"
569	fi
570
571
572
573	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
574	kennung=$RANDOM
575	job_on_remhost=${job_name}_${kennung}_$local_host
576	job_to_send=job_to_send_$kennung
577	if [[ $delete_dayfile = false ]]
578	then
579	remote_dayfile=${local_host}_${job_name}_result_$kennung
580	local_dayfile=${remote_host}_${job_name}
581	else
582	remote_dayfile=/dev/null
583	fi
584
585
586
587	# Generate the batch job scripts (qsub/msub/LoadLeveler)
588	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
589	then
590
591	# General LoadLeveler settings
592	execute_in_shell="#!/bin/ksh"
593	use_shell="# @ shell = /bin/ksh"
594	consumable_memory="ConsumableMemory($memory mb)"
595	class="# @ class = $queue"
596	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
597	network_to_use="# @ network.mpi = sn_all,shared,us"
598	data_limit="# @ data_limit = 1.76gb"
599	image_size="# @ image_size = 50"
600	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
601
602	if [[ $email_notification = none ]]
603	then
604	notify_user=""
605	else
606	notify_user="# @ notify_user = $email_notification"
607	if [[ $delete_dayfile = true ]]
608	then
609	notification='# @ notification = never'
610	fi
611	fi
612
613	if [[ $remote_host = ibmh ]]
614	then
615	data_limit=""
616	network_to_use=""
617	class="# @ class = $queue"
618	environment=""
619	rset="# @ rset = RSET_MCM_AFFINITY"
620	task_affinity="# @ task_affinity = core(1)"
621	elif [[ $remote_host = ibmkisti ]]
622	then
623	network_to_use="# @ network.MPI = sn_all,shared,US"
624	wall_clock_limit="# @ wall_clock_limit = $timestring"
625	if [[ $threads_per_task = 1 ]]
626	then
627	rset="# @ rset = RSET_MCM_AFFINITY"
628	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
629	fi
630	environment=""
631	use_shell=""
632	data_limit=""
633	image_size=""
634	elif [[ $remote_host = ibmku ]]
635	then
636	execute_in_shell="#!/usr/bin/ksh"
637	use_shell="# @ shell = /usr/bin/ksh"
638	consumable_memory=""
639	environment=""
640	network_to_use="# @ network.mpi = sn_all,shared,us"
641	data_limit=""
642	image_size=""
643	elif [[ $remote_host = ibms ]]
644	then
645	network_to_use="# @ network.mpi = csss,shared,us"
646	elif [[ $remote_host = ibmy ]]
647	then
648	consumable_memory=""
649	network_to_use=""
650	fi
651
652	cat > $job_to_send << %%END%%
653	$execute_in_shell
654	$use_shell
655
656	# @ job_type = parallel
657	# @ job_name = $job_name
658	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
659	# @ output = $remote_dayfile
660	# @ error = $remote_dayfile
661	$wall_clock_limit
662	$image_size
663	$class
664	$environment
665	$network_to_use
666	$data_limit
667	$rset
668	$mcm_affinity_options
669	$task_affinity
670	$notification
671	$notify_user
672
673	%%END%%
674
675	if (( nodes > 0 ))
676	then
677
678	if [[ $remote_host != ibmkisti ]]
679	then
680
681	cat >> $job_to_send << %%END%%
682	# @ node = $nodes
683	# @ tasks_per_node = $processes_per_node
684	# @ node_usage = $node_usage
685	# @ queue
686
687	%%END%%
688
689	else
690
691	cat >> $job_to_send << %%END%%
692	# @ total_tasks = $mpi_tasks
693	# @ blocking = unlimited
694	# @ queue
695
696	%%END%%
697
698	fi
699
700	else
701
702	if [[ $remote_host != ibmy ]]
703	then
704
705	cat >> $job_to_send << %%END%%
706	# @ blocking = unlimited
707	# @ total_tasks = $numprocs
708	# @ node_usage = $node_usage
709	# @ queue
710
711	%%END%%
712
713	else
714
715	cat >> $job_to_send << %%END%%
716	# @ node = 1
717	# @ total_tasks = $numprocs
718	# @ queue
719
720	%%END%%
721
722	fi
723
724	fi
725
726	# workaround because of silly job filter on ibmkisti
727	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
728	then
729	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
730	fi
731
732	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
733	then
734
735	cat > $job_to_send << %%END%%
736	#!/bin/ksh
737
738	# @ job_type = serial
739	# @ node_usage = $node_usage
740	# @ job_name = palm
741	# @ wall_clock_limit = ${timestring},$timestring
742	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
743	# @ output = $remote_dayfile
744	# @ error = $remote_dayfile
745	$class
746	$notification
747
748	# @ queue
749
750	%%END%%
751
752	elif [[ $remote_host = lcfimm ]]
753	then
754
755	if [[ $numprocs != 0 ]]
756	then
757	cat > $job_to_send << %%END%%
758	#!/bin/ksh
759	#PBS -N $job_name
760	#PBS -A $project_account
761	#PBS -l walltime=$timestring
762	#PBS -l nodes=${nodes}:ppn=$processes_per_node
763	#PBS -l pmem=${memory}mb
764	#PBS -m abe
765	#PBS -o $remote_dayfile
766	#PBS -j oe
767	mpd &
768
769	%%END%%
770
771	else
772	cat > $job_to_send << %%END%%
773	#!/bin/ksh
774	#PBS -N $job_name
775	#PBS -A $project_account
776	#PBS -l walltime=$timestring
777	#PBS -l ncpus=1
778	#PBS -l pmem=${memory}mb
779	#PBS -m abe
780	#PBS -o $remote_dayfile
781	#PBS -j oe
782
783	%%END%%
784
785	fi
786
787	elif [[ $remote_host = lcflow ]]
788	then
789	if [ $memory -gt 1900 ]; then
790	use_himem=""
791	else
792	use_himem="#"
793	fi
794	if [[ $numprocs != 0 ]]
795	then
796	pe_set="#$ -pe impi $numprocs"
797	else
798	pe_set="#$ -pe impi 1"
799	fi
800	if [[ $queue = default ]]
801	then
802	queue_set=""
803	else
804	queue_set="#$ -q $queue"
805	fi
806	[[ "$disc_space" = "" ]] && disc_space=50
807
808	cat > $job_to_send << %%END%%
809	#!/bin/bash
810	#$ -S /bin/bash
811	#$ -N $job_name
812	#$ -cwd
813	#$ -l h_rt=$timestring
814	#$ -l h_vmem=${memory}M
815	#$ -o $remote_dayfile
816	#$ -j y
817	$pe_set
818	#$ -R y
819	${use_himem}#$ -l highmem=true
820	#$ -l h_fsize=${disc_space}G
821	$queue_set
822
823	%%END%%
824
825	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
826	then
827
828	if [[ $numprocs != 0 ]]
829	then
830	cat > $job_to_send << %%END%%
831	#!/bin/ksh
832	#PBS -N $job_name
833	#PBS -l walltime=$timestring
834	#PBS -l ncpus=$numprocs
835	#PBS -l pmem=${memory}mb
836	#PBS -o $remote_dayfile
837	#PBS -l nodes=$nodes:ppn=${processes_per_node}
838	#PBS -j oe
839
840	mpd &
841
842	%%END%%
843
844	else
845	cat > $job_to_send << %%END%%
846	#!/bin/ksh
847	#PBS -N $job_name
848	#PBS -l walltime=$timestring
849	#PBS -l ncpus=1
850	#PBS -l pmem=${memory}mb
851	#PBS -o $remote_dayfile
852	#PBS -j oe
853
854	%%END%%
855
856	fi
857
858	elif [[ $remote_host = lckiaps ]]
859	then
860
861	if [[ $numprocs != 0 ]]
862	then
863	cat > $job_to_send << %%END%%
864	#!/bin/ksh
865	#PBS -N $job_name
866	#PBS -l walltime=$timestring
867	#PBS -l select=1:ncpus=$numprocs
868	#PBS -l pmem=${memory}mb
869	#PBS -q $queue
870	#PBS -o $remote_dayfile
871	#PBS -j oe
872	#PBS -V
873
874	%%END%%
875
876	else
877	cat > $job_to_send << %%END%%
878	#!/bin/ksh
879	#PBS -N $job_name
880	#PBS -l walltime=$timestring
881	#PBS -l ncpus=1
882	#PBS -l pmem=${memory}mb
883	#PBS -o $remote_dayfile
884	#PBS -j oe
885
886	%%END%%
887
888	fi
889
890	elif [[ $remote_host = lcyon ]]
891	then
892
893	if [[ $numprocs != 0 ]]
894	then
895	cat > $job_to_send << %%END%%
896	#!/bin/ksh
897	#PBS -N $job_name
898	#PBS -l walltime=$timestring
899	#PBS -l ncpus=$numprocs
900	#PBS -l pmem=${memory}mb
901	#PBS -o $remote_dayfile
902	#PBS -j oe
903
904	%%END%%
905
906	else
907	cat > $job_to_send << %%END%%
908	#!/bin/ksh
909	#PBS -N $job_name
910	#PBS -l walltime=$timestring
911	#PBS -l ncpus=1
912	#PBS -l pmem=${memory}mb
913	#PBS -o $remote_dayfile
914	#PBS -j oe
915
916	%%END%%
917
918	fi
919
920	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
921	then
922
923	if [[ "$sgi_feature" != "" ]]
924	then
925	feature_directive="#PBS -l feature=$sgi_feature"
926	else
927	feature_directive=""
928	fi
929
930	if [[ $queue = dataq \|\| $queue = permq ]]
931	then
932	feature_directive="#PBS -l feature=data"
933	fi
934
935	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
936	then
937	queue_directive="#PBS -q $queue"
938	else
939	queue_directive=""
940	fi
941
942	if [[ $email_notification = none ]]
943	then
944	email_directive=""
945	else
946	email_directive="#PBS -M $email_notification"
947	fi
948
949	if [[ $numprocs != 0 ]]
950	then
951	cat > $job_to_send << %%END%%
952	#!/bin/bash
953	#PBS -N $job_name
954	#PBS -l walltime=$timestring
955	#PBS -l nodes=$nodes:ppn=${processes_per_node}
956	#PBS -l naccesspolicy=$node_usage
957	#PBS -o $remote_dayfile
958	#PBS -j oe
959	$feature_directive
960	$queue_directive
961	$email_directive
962
963	eval \`/sw/swdist/bin/modulesinit\`
964	#. /usr/share/modules/init/bash
965	$init_cmds
966	$module_calls
967
968	echo ld_library_path=\$LD_LIBRARY_PATH
969
970	%%END%%
971
972	else
973	cat > $job_to_send << %%END%%
974	#PBS -S /bin/bash
975	#PBS -N $job_name
976	#PBS -l walltime=$timestring
977	#PBS -l ncpus=1
978	#PBS -o $remote_dayfile
979	#PBS -j oe
980	$queue_directive
981	$email_directive
982
983	eval \`/sw/swdist/bin/modulesinit\`
984	#. /usr/share/modules/init/bash
985	$init_cmds
986	$module_calls
987
988	%%END%%
989
990	fi
991
992	elif [[ $remote_host = lcxe6 ]]
993	then
994
995	if [[ $numprocs != 0 ]]
996	then
997	cat > $job_to_send << %%END%%
998	#!/bin/ksh
999	#PBS -S /bin/ksh
1000	#PBS -N $job_name
1001	#PBS -A $project_account
1002	#PBS -j oe
1003	#PBS -l walltime=$timestring
1004	#PBS -l mppwidth=${numprocs}
1005	#PBS -l mppnppn=${processes_per_node}
1006	#PBS -m abe
1007	#PBS -o $remote_dayfile
1008	$email_directive
1009
1010	$init_cmds
1011	$module_calls
1012
1013	%%END%%
1014
1015	else
1016	cat > $job_to_send << %%END%%
1017	#!/bin/ksh
1018	#PBS -S /bin/ksh
1019	#PBS -N $job_name
1020	#PBS -A $project_account
1021	#PBS -j oe
1022	#PBS -l walltime=$timestring
1023	#PBS -l ncpus=1
1024	#PBS -l pmem=${memory}mb
1025	#PBS -m abe
1026	$email_directive
1027	#PBS -o $remote_dayfile
1028
1029	$init_cmds
1030	$module_calls
1031
1032	%%END%%
1033
1034	fi
1035
1036	elif [[ $remote_host = lckyoto ]]
1037	then
1038
1039	cat > $job_to_send << %%END%%
1040	#!/bin/ksh
1041	# @\$-o $remote_dayfile
1042	# @\$-eo -oi
1043	# @\$-lP 16
1044	# @\$-lp 1
1045	# @\$-lm 28gb -llm unlimited -ls unlimited
1046	# @\$-q $queue
1047	# @\$-Pvn abs_pack
1048	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1049	#. /thin/local/etc/setprofile/intel-11.0.sh
1050	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1051	. ~/.myprofile
1052	#. /home2/t/t51254/palm/current_version/myprofile
1053	#. /thin/apps/pgi/mpi.sh
1054	#
1055	env
1056	#
1057	set -x
1058
1059	%%END%%
1060
1061	elif [[ $remote_host = lcxt5m ]]
1062	then
1063
1064	if [[ $numprocs != 0 ]]
1065	then
1066	cat > $job_to_send << %%END%%
1067	#!/bin/ksh
1068	#PBS -S /bin/ksh
1069	#PBS -N $job_name
1070	#PBS -j oe
1071	#PBS -l walltime=$timestring
1072	#PBS -l mppwidth=${numprocs}
1073	#PBS -l mppnppn=${processes_per_node}
1074	#PBS -m abe
1075	#PBS -o $remote_dayfile
1076
1077	$init_cmds
1078	$module_calls
1079
1080	%%END%%
1081
1082	else
1083	cat > $job_to_send << %%END%%
1084	#!/bin/ksh
1085	#PBS -S /bin/ksh
1086	#PBS -N $job_name
1087	#PBS -j oe
1088	#PBS -l walltime=$timestring
1089	#PBS -l ncpus=1
1090	#PBS -l pmem=${memory}mb
1091	#PBS -m abe
1092	#PBS -o $remote_dayfile
1093
1094	$init_cmds
1095	$module_calls
1096
1097	%%END%%
1098
1099	fi
1100
1101	elif [[ $remote_host = lckyuh ]]
1102	then
1103	cat > $job_to_send << %%END%%
1104	#!/bin/bash
1105	#PJM -L "rscgrp=$queue"
1106	#PJM -L "node=$nodes"
1107	#PJM --mpi "proc=$numprocs"
1108	#PJM -L "elapse=$timestring"
1109	#PJM -o $remote_dayfile
1110	#PJM -j
1111	#PJM -X
1112	#PJM --no-stging
1113
1114	export LANG=en_US.UTF-8
1115	%%END%%
1116
1117	elif [[ $remote_host = lckyut ]]
1118	then
1119	cat > $job_to_send << %%END%%
1120	#!/bin/bash
1121	#PJM -L "rscgrp=$queue"
1122	#PJM -L "vnode=$numprocs"
1123	#PJM -L "vnode-core=1"
1124	#PJM -L "elapse=$timestring"
1125	#PJM --mpi proc=$numprocs
1126	#PJM -o $remote_dayfile
1127	#PJM -j
1128	#PJM -X
1129	#PJM --no-stging
1130
1131	export LANG=en_US.UTF-8
1132	%%END%%
1133
1134	elif [[ $remote_host = nech ]]
1135	then
1136
1137	if (( nodes > 1 ))
1138	then
1139	cat > $job_to_send << %%END%%
1140	#!/bin/ksh
1141	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1142	#PBS -l ${qsubmem}=${Memory}gb
1143	#PBS -b $nodes
1144	#PBS -o $remote_dayfile
1145	#PBS -N palm
1146	#PBS -j o
1147	#PBS -T mpisx
1148
1149	%%END%%
1150
1151	elif [[ $numprocs != 0 ]]
1152	then
1153	cat > $job_to_send << %%END%%
1154	#!/bin/ksh
1155	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1156	#PBS -l ${qsubmem}=${Memory}gb
1157	#PBS -o $remote_dayfile
1158	#PBS -N palm
1159	#PBS -j o
1160
1161	%%END%%
1162
1163	else
1164	cat > $job_to_send << %%END%%
1165	#!/bin/ksh
1166	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1167	#PBS -o $remote_dayfile
1168	#PBS -j o
1169
1170	%%END%%
1171
1172	fi
1173
1174	elif [[ $remote_host = necriam ]]
1175	then
1176
1177	if (( nodes > 1 ))
1178	then
1179	cat > $job_to_send << %%END%%
1180	#!/bin/ksh
1181	#PBS -b $nodes
1182	#PBS -o $remote_dayfile
1183	#PBS -N $job_name
1184	#PBS -j o
1185	#PBS -v MPIPROGINV=YES
1186
1187	%%END%%
1188
1189	elif [[ $numprocs != 0 ]]
1190	then
1191	cat > $job_to_send << %%END%%
1192	#!/bin/ksh
1193	#PBS -q ${queue}
1194	#PBS -o $remote_dayfile
1195	#PBS -N $job_name
1196	#PBS -j o
1197	#PBS -v MPIPROGINV=YES
1198
1199	%%END%%
1200
1201	else
1202	cat > $job_to_send << %%END%%
1203	#!/bin/ksh
1204	#PBS -o $remote_dayfile
1205	#PBS -j o
1206
1207	%%END%%
1208
1209	fi
1210
1211	elif [[ $remote_host = lctit ]]
1212	then
1213	cat > $job_to_send << %%END%%
1214	#!/bin/ksh
1215	$init_cmds
1216	$module_calls
1217
1218	%%END%%
1219
1220	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1221	if [[ $tasks_per_node != $processes_per_node ]]
1222	then
1223	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1224	else
1225	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1226	fi
1227
1228	else
1229
1230	cat > $job_to_send << %%END%%
1231	# @\$-q ${queue}
1232	# @\$-l${qsubtime} $timestring
1233	# @\$-l${qsubmem} ${memory}mb
1234	# @\$-o $remote_dayfile
1235	# @\$-eo
1236
1237	%%END%%
1238
1239	fi
1240
1241
1242	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1243	# BEI EXIT VERANLASSEN
1244	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1245	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1246	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1247	then
1248	echo "set +vx" >> $job_to_send
1249	echo "trap '" >> $job_to_send
1250	echo "set +vx" >> $job_to_send
1251	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1252	then
1253	if [[ $remote_host = ibmh ]]
1254	then
1255	return_queue=c1
1256	elif [[ $remote_host = ibmkisti ]]
1257	then
1258	return_queue=class.1-2
1259	elif [[ $remote_host = ibmku ]]
1260	then
1261	return_queue=sdbg2
1262	elif [[ $remote_host = ibms ]]
1263	then
1264	return_queue=p_normal
1265	elif [[ $remote_host = ibmy ]]
1266	then
1267	return_queue=serial
1268	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1269	then
1270	return_queue=serialq
1271	elif [[ $remote_host = necriam ]]
1272	then
1273	return_queue=SP
1274	elif [[ $remote_host = lckiaps ]]
1275	then
1276	return_queue=express
1277	elif [[ $remote_host = lckyuh ]]
1278	then
1279	return_queue=cx-single
1280	elif [[ $remote_host = lckyut ]]
1281	then
1282	return_queue=cx-single
1283	else
1284	return_queue=unknown
1285	fi
1286
1287	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1288	then
1289
1290	if [[ $remote_host = ibmku ]]
1291	then
1292	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1293	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1294	else
1295	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1296	fi
1297	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1298	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1299	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1300	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1301	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1302	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1303	if [[ $host != "ibmh" ]]
1304	then
1305	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1306	fi
1307	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1308	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1309
1310	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1311	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1312
1313	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1314	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1315	if [[ $remote_host = ibmku ]]
1316	then
1317	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
1318	fi
1319	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1320
1321	elif [[ $remote_host = nech ]]
1322	then
1323	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1324	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1325	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1326	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1327	echo "#PBS -j o" >> $job_to_send
1328	echo " " >> $job_to_send
1329	echo "set -x" >> $job_to_send
1330	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1331	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1332	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1333	echo "%%END%%" >> $job_to_send
1334
1335	elif [[ $remote_host = necriam ]]
1336	then
1337	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1338	echo "#PBS -q $return_queue" >> $job_to_send
1339	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1340	echo "#PBS -j o" >> $job_to_send
1341	echo " " >> $job_to_send
1342	echo "set -x" >> $job_to_send
1343	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1344	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1345	echo "%%END%%" >> $job_to_send
1346
1347	elif [[ $remote_host = lckyuh ]]
1348	then
1349	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1350	echo "#!/bin/bash" >> $job_to_send
1351	echo "#PJM -L \"node=1\"" >> $job_to_send
1352	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1353	echo "#PJM --no-stging" >> $job_to_send
1354	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1355	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1356	echo "#PJM -j" >> $job_to_send
1357	echo " " >> $job_to_send
1358	echo "export LANG=en_US.UTF-8" >> $job_to_send
1359	echo "set -x" >> $job_to_send
1360	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1361	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1362	echo "%%END%%" >> $job_to_send
1363
1364	elif [[ $remote_host = lckyut ]]
1365	then
1366	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1367	echo "#!/bin/bash" >> $job_to_send
1368	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1369	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1370	echo "#PJM --no-stging" >> $job_to_send
1371	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1372	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1373	echo "#PJM -j" >> $job_to_send
1374	echo " " >> $job_to_send
1375	echo "export LANG=en_US.UTF-8" >> $job_to_send
1376	echo "set -x" >> $job_to_send
1377	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1378	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1379	echo "%%END%%" >> $job_to_send
1380
1381	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1382	then
1383	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1384	echo "#!/bin/bash" >> $job_to_send
1385	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1386	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1387	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1388	echo "#PBS -l feature=data" >> $job_to_send
1389	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1390	echo "#PBS -j oe" >> $job_to_send
1391	echo " " >> $job_to_send
1392	echo ". /usr/share/modules/init/bash" >> $job_to_send
1393	echo "set -x" >> $job_to_send
1394	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1395	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1396	echo "%%END%%" >> $job_to_send
1397
1398	elif [[ $remote_host = lcflow ]]
1399	then
1400	echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send
1401	echo "#!/bin/bash" >> $job_to_send
1402	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1403	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1404	echo "SGEPREFIX -cwd" >> $job_to_send
1405	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1406	echo "SGEPREFIX -l h_vmem=100M" >> $job_to_send
1407	echo "SGEPREFIX -j y" >> $job_to_send
1408	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send
1409	echo " " >> $job_to_send
1410	echo "set -x" >> $job_to_send
1411	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1412	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1413	echo "" >> $job_to_send
1414	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1415	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1416	echo "rm -f scpjob.${kennung}" >> $job_to_send
1417	echo "%%END%%" >> $job_to_send
1418	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send
1419	echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send
1420
1421	else
1422
1423	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1424	echo "# @\\\$-q $return_queue" >> $job_to_send
1425	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1426	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1427	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1428	then
1429	echo "# @\$-l mpp_p=0" >> $job_to_send
1430	fi
1431	echo '# @\$-lF 10mb' >> $job_to_send
1432	# echo '# @\$-o /dev/null' >> $job_to_send
1433	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1434	echo '# @\\\$-eo' >> $job_to_send
1435	echo " " >> $job_to_send
1436	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1437	then
1438	echo "set +vx" >> $job_to_send
1439	echo ". .profile" >> $job_to_send
1440	fi
1441	echo "set -x" >> $job_to_send
1442	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1443	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1444	echo "%%END%%" >> $job_to_send
1445	fi
1446
1447	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1448	then
1449	echo "llsubmit scpjob.$kennung" >> $job_to_send
1450	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1451	then
1452	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1453	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1454	echo "msub scpjob.$kennung" >> $job_to_send
1455	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1456	then
1457	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1458	elif [[ $remote_host = t3es ]]
1459	then
1460	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1461	elif [[ $remote_host = lckiaps ]]
1462	then
1463	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1464	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
1465	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
1466	elif [[ $remote_host = lckyu* ]]
1467	then
1468	echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1469	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
1470	elif [[ $remote_host = lcflow ]]
1471	then
1472	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
1473	echo "ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send
1474	else
1475	echo "$submcom scpjob.$kennung" >> $job_to_send
1476	fi
1477	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1478	then
1479	echo "rm scpjob.$kennung" >> $job_to_send
1480	fi
1481	if [[ $remote_host = nech ]]
1482	then
1483	echo "cd -" >> $job_to_send
1484	fi
1485	else
1486	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1487	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1488	fi
1489	echo "set -x" >> $job_to_send
1490	echo " ' exit" >> $job_to_send
1491	echo "set -x" >> $job_to_send
1492	fi
1493
1494
1495
1496	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1497	cat $file_to_send >> $job_to_send
1498
1499	if [[ $remote_host = ibm ]]
1500	then
1501	echo " " >> $job_to_send
1502	echo "exit" >> $job_to_send
1503	fi
1504
1505	# remove job file
1506	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1507	then
1508	echo " " >> $job_to_send
1509	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1510	fi
1511
1512
1513
1514	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1515	if [[ -z $remote_user ]]
1516	then
1517	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1518	then
1519	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1520	fi
1521	fi
1522
1523
1524
1525	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1526	if [[ $no_submit = false ]]
1527	then
1528	if [[ $remote_host != $local_host ]]
1529	then
1530	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1531	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1532	then
1533	job_catalog_save=$job_catalog
1534	job_catalog=job_queue
1535	elif [[ $remote_host = nech ]]
1536	then
1537	job_catalog_save=$job_catalog
1538	job_catalog=/hpf/b/${remote_user}/job_queue
1539	fi
1540	if [[ $remote_host = nech ]]
1541	then
1542	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1543	# TRANSFERIERT WERDEN
1544	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1545	else
1546	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1547	fi
1548	if [[ $? = 1 ]]
1549	then
1550	locat=scp; exit
1551	fi
1552	if [[ $remote_host = ibms ]]
1553	then
1554	job_catalog=$job_catalog_save
1555	fi
1556	[[ $verify = true ]] && printf "\n >>> finished\n"
1557	else
1558	eval job_catalog=$job_catalog
1559	cp $job_to_send ${job_catalog}/$job_on_remhost
1560	fi
1561
1562
1563
1564	# NQS- BZW. LOADLEVELER-JOB STARTEN
1565	if [[ $remote_host != $local_host ]]
1566	then
1567	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1568
1569	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1570	then
1571	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1572	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1573	elif [[ $remote_host = ibmku ]]
1574	then
1575	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1576	elif [[ $remote_host = lcflow ]]
1577	then
1578	ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1579	else
1580	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1581	fi
1582
1583	[[ $verify = true ]] && printf " >>> o.k.\n"
1584	else
1585	cd $job_catalog
1586	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1587	then
1588	eval $submcom $job_on_remhost
1589	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1590	then
1591	chmod u+x $job_on_remhost
1592	eval $submcom $job_on_remhost
1593	elif [[ $local_host = nech ]]
1594	then
1595	if [[ $queue = default ]]
1596	then
1597	eval $submcom $job_on_remhost
1598	else
1599	eval $submcom -q $queue $job_on_remhost
1600	fi
1601	else
1602	qsub $job_on_remhost
1603	fi
1604
1605	# Jobfile must not be deleted on lctit/ibmku!! This will be done
1606	# only at the end of the job.
1607	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1608	then
1609	rm $job_on_remhost
1610	fi
1611	cd - > /dev/null
1612	fi
1613	fi
1614
1615
1616
1617	# ABSCHLUSSARBEITEN
1618
1619	if [[ $no_submit = false ]]
1620	then
1621	rm -f $job_to_send
1622	fi
1623	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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