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subjob @ 624

Last change on this file since 624 was 622, checked in by raasch, 14 years ago

New:
---

Optional barriers included in order to speed up collective operations
MPI_ALLTOALL and MPI_ALLREDUCE. This feature is controlled with new initial
parameter collective_wait. Default is .FALSE, but .TRUE. on SGI-type
systems. (advec_particles, advec_s_bc, buoyancy, check_for_restart,
cpu_statistics, data_output_2d, data_output_ptseries, flow_statistics,
global_min_max, inflow_turbulence, init_3d_model, init_particles, init_pegrid,
init_slope, parin, pres, poismg, set_particle_attributes, timestep,
read_var_list, user_statistics, write_compressed, write_var_list)

Adjustments for Kyushu Univ. (lcrte, ibmku). Concerning hybrid
(MPI/openMP) runs, the number of openMP threads per MPI tasks can now
be given as an argument to mrun-option -O. (mbuild, mrun, subjob)

Changed:

Initialization of the module command changed for SGI-ICE/lcsgi (mbuild, subjob)

Errors:

Property svn:keywords set to Id Rev

File size: 48.3 KB

Rev	Line
[1]	1	#!/bin/ksh
[82]	2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
[169]	3	# $Id: subjob 622 2010-12-10 08:08:13Z heinze $
[1]	4
	5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
	6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
	7	# Host zurueckgeschickt werden sollen
	8
	9
	10	# letzte Aenderung:
	11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
	12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
	13	# 06/02/98 - Siggi - berte validiert
	14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
	15	# moeglich
	16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
	17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
	18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
	19	# allgemeine Anpassungen fuer ibm-Rechner
	20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
	21	# Ruecktransfer des Jobprotokolls fuer diese
	22	# Maschine abgeschaltet
	23	# 31/10/02 - Siggi - berni validiert
	24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
	25	# 08/11/02 - Siggi - quanero validiert
	26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
	27	# 23/01/03 - Siggi - hostname nobel changed to nobela
	28	# 06/02/03 - Siggi - gregale validated
	29	# 12/02/03 - Siggi - orkan and maestro validated
	30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
	31	# 12/03/03 - Siggi - nec at DKRZ validated
	32	# 13/03/03 - Siggi - new nqs resource variable Memory
	33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
	34	# node
	35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
	36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
	37	# cxxl added to ibmh
	38	# 29/08/03 - Siggi - changes in job queues and communication system on
	39	# ibms
	40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
	41	# 30/10/03 - Siggi - nech is not supported any more
	42	# 10/11/03 - Siggi - nech2 renamed to nech
	43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
	44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
	45	# 31/03/04 - Siggi - new option -N for node usage
	46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
	47	# due to error in ssh installation (otherwise a prompt
	48	# for the password appears)
	49	# 23/07/04 - Siggi - changes due to the new berni configuration
	50	# (federation switch)
	51	# 01/09/04 - Gerald new job-classes on hanni
	52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
	53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
	54	# 03/12/04 - Siggi - notification on ibm switched of in case of
	55	# delete_dayfile = true, node usage in cdev set to
	56	# shared
	57	# 16/02/05 - Gerald hababai validated
	58	# 29/03/05 - Micha - new job class channi on hanni
	59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
	60	# on ibms
	61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
	62	# p_normal
	63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
	64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
	65	# "sn_all", new job class cexp
	66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
	67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
	68	# hurricane (with -X0)
	69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
	70	# added
	71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
	72	# 09/02/06 - Siggi - ibmy admitted
	73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
	74	# 13/04/06 - Siggi - ostria admitted
	75	# 18/04/06 - Siggi - new option -O for OpenMP usage
	76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
	77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
	78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
	79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
	80	# 28/11/06 - Siggi - levanto admitted
[5]	81	# 13/02/07 - Siggi - hpmuk releated code removed
[35]	82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
[82]	83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
[102]	84	# 27/07/07 - Siggi - autan admitted
[108]	85	# 03/08/07 - Marcus- lcfimm admitted
[113]	86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
[118]	87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
	88	# suggestions
[122]	89	# 19/10/07 - Marcus- add new optional argument -g group_number
[125]	90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
[129]	91	# 30/10/07 - Marcus- further adjustments for queues on lctit
[164]	92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
	93	# Science)
[179]	94	# 14/07/08 - Siggi - adjustments for lcsgih
[205]	95	# 23/09/08 - Gerald- paesano admitted
[206]	96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
[251]	97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
[292]	98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
[312]	99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
[325]	100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
[343]	101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
[352]	102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
[366]	103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
	104	# now run on the data nodes (feature=data)
[367]	105	# 25/08/09 - BjornM- adapted for lck
[372]	106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
[376]	107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
	108	# set in the config file by the user
[416]	109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
	110	# adding special1q
[407]	111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
[416]	112	# 16/10/09 - Carolin-adding permq
[440]	113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	114	# 03/02/10 - Siggi - bug in serial jobs removed
[492]	115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
	116	# notification)
[493]	117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
	118	# module_calls
[551]	119	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
	120	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
[552]	121	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
	122	# lcxt4
[622]	123	# 08/12/10 - Siggi - initialization of the module command changed for
	124	# SGI-ICE/lcsgi
	125	# adjustments for Kyushu Univ. (lcrte, ibmku)
[1]	126
[437]	127
[552]	128
[1]	129	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
[352]	130	delete_dayfile=false
	131	email_notification=none
[122]	132	group_number=none
[1]	133	locat=normal
	134	no_default_queue=none
	135	no_submit=false
	136	job_catalog="~/job_queue"
	137	job_name=none
	138	local_user=$LOGNAME
	139	node_usage=shared
[475]	140	numprocs=0
[1]	141	punkte="..........................................................."
	142	submcom=qsub
	143	queue=default
	144	remote_host=none
	145	remote_user=""
	146	verify=true
	147
	148	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[622]	149	typeset -i inumprocs nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	150	typeset -L20 spalte1
	151	typeset -R40 spalte2
	152	typeset -L60 spalte3
	153
	154
	155
	156	# FEHLERBEHANDLUNG
	157	# BEI EXIT:
	158	trap 'if [[ $locat != normal ]]
	159	then
	160	case $locat in
	161	(option) printf "\n --> available optios can be displayed"
	162	printf " by typing:"
	163	printf "\n \"subjob ?\" \n";;
	164	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	165	(*) printf "\n +++ unknown error"
	166	printf "\n please inform S. Raasch!\n"
	167	esac
	168	[[ -f $job_to_send ]] && rm $job_to_send
	169	printf "\n\n+++ SUBJOB killed \n\n"
	170	fi' exit
	171
	172
	173	# BEI TERMINAL-BREAK:
	174	trap '[[ -f $job_to_send ]] && rm $job_to_send
	175	printf "\n\n+++ SUBJOB killed \n\n"
	176	exit
	177	' 2
	178
	179
	180
	181
	182	# LOKALEN HOSTNAMEN FESTSTELLEN
	183	local_host=$(hostname)
	184
	185
	186
	187	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	188	# UEBERHAUPT ZULAESSIG IST
	189	case $local_host in
	190	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	191	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	192	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[400]	193	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
	194	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
	195	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
	196	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
	197	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
[291]	198	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[12]	199	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[292]	200	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[372]	201	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
[108]	202	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
[1]	203	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	204	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[108]	205	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
[367]	206	(node*) local_addres=165.132.26.61 local_host=lck;;
[101]	207	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[1]	208	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
	209	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
[5]	210	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	211	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[164]	212	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
[400]	213	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
	214	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
	215	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
	216	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
[292]	217	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
[210]	218	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
[440]	219	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
[312]	220	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
[5]	221	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
[407]	222	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
[5]	223	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
	224	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[437]	225	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
[164]	226	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
[1]	227	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	228	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	229	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
[205]	230	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
[5]	231	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[622]	232	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
[1]	233	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
	234	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
[259]	235	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
[181]	236	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
[196]	237	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
[1]	238	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
	239	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
[622]	240	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
[1]	241	(*) printf "\n +++ \"$local_host\" unknown";
	242	printf "\n please inform S. Raasch!";
	243	locat=parameter; exit;;
	244	esac
	245
	246
	247
	248	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	249	remote_host=$local_host
	250
	251
	252
	253
	254	# PROZEDUROPTIONEN EINLESEN
[352]	255	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
[1]	256	do
	257	case $option in
	258	(c) job_catalog=$OPTARG;;
	259	(d) delete_dayfile=true;;
	260	(D) no_submit=true;;
[352]	261	(e) email_notification=$OPTARG;;
[125]	262	(g) group_number=$OPTARG;;
[1]	263	(h) remote_host=$OPTARG;;
	264	(m) memory=$OPTARG;;
	265	(n) job_name=$OPTARG;;
	266	(N) node_usage=$OPTARG;;
	267	(O) threads_per_task=$OPTARG;;
	268	(q) no_default_queue=$OPTARG;;
	269	(t) cputime=$OPTARG;;
	270	(T) tasks_per_node=$OPTARG;;
	271	(u) remote_user=$OPTARG;;
	272	(v) verify=false;;
	273	(X) numprocs=$OPTARG;;
	274	(\?) printf "\n +++ Option $OPTARG unknown \n";
	275	locat=option; exit;;
	276	esac
	277	done
	278
	279
	280	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	281	shift OPTIND-1; file_to_send=$1
	282
	283
	284	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	285	if [ "$1" = "?" ]
	286	then
	287	(printf "\n *** subjob can be called as follows:\n"
	288	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	289	printf "\n Description of available options:\n"
	290	printf "\n Option Description Default-Value"
	291	printf "\n -c job-input- and output-catalog ~/job_queue"
	292	printf "\n -d no job-protocol will be created ---"
	293	printf "\n -D only the job-file will be created ---"
	294	printf "\n -h execution host, available hosts: $remote_host"
[622]	295	printf "\n ibm, ibmh, ibmku, ibms, ibmy, lc...,"
[251]	296	printf "\n lctit, nech, necriam, unics"
[1]	297	printf "\n -m memory demand per process in MByte ---"
	298	printf "\n -n jobname <jobdatei>"
	299	printf "\n -O threads per task (for OpenMP usage) 1"
	300	printf "\n -q job-queue to be used default"
	301	printf "\n -t allowed cpu-time in seconds ---"
	302	printf "\n -T tasks per node (on parallel hosts) ---"
	303	printf "\n -u username on execution host from .netrc"
	304	printf "\n -v no prompt for confirmation ---"
	305	printf "\n -X # of processors (on parallel hosts) 1"
	306	printf "\n "
	307	printf "\n The only possible positional parameter is <jobfile>:"
	308	printf "\n The complete NQS-job must be provided here."
	309	printf "\n <jobfile>=? creates this outline\n\n") \| more
	310	exit
	311	fi
	312
	313
	314
	315	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	316	if [[ "$file_to_send" = "" ]]
	317	then
	318	printf "\n +++ job-file missing"
	319	locat=parameter; exit
	320	else
	321	if [[ -f $file_to_send ]]
	322	then
	323	true
	324	else
	325	printf "\n +++ job-file: "
	326	printf "\n $file_to_send"
	327	printf "\n does not exist"
	328	locat=parameter; exit
	329	fi
	330	fi
	331
	332
	333
	334	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	335	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	336	if [[ $job_name = none ]]
	337	then
	338	job_name=$file_to_send
	339	fi
	340	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	341	then
	342	printf "\n +++ job-file name: "
	343	printf "\n $job_name"
	344	printf "\n must not contain \"/\"-characters"
	345	locat=parameter; exit
	346	fi
	347
	348
	349
	350
	351	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	352	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	353	if [[ $remote_host = none ]]
	354	then
	355	printf "\n +++ host missing"
	356	locat=option; exit
	357	else
	358	case $remote_host in
[251]	359	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[312]	360	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[622]	361	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
[251]	362	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	363	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	364	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
[440]	365	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
[540]	366	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
	367	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
[367]	368	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
[251]	369	(lctit) queue=lctit; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
[544]	370	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.4.9-snap.201005191035/bin/qsub;;
[437]	371	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
[251]	372	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
	373	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
	374	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	375	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	376	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	377	locat=parameter; exit;;
[1]	378	esac
	379	fi
	380
	381
	382	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	383	if [[ $no_default_queue != none ]]
	384	then
	385	error=false
	386	ndq=$no_default_queue
	387	case $remote_host in
	388	(ibm) case $ndq in
	389	(p690_express\|p690_standard\|p690_long) error=false;;
	390	(*) error=true;;
	391	esac;;
	392	(ibmh) case $ndq in
[312]	393	(no_class) error=false;;
[1]	394	(*) error=true;;
	395	esac;;
[622]	396	(ibmku) case $ndq in
	397	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	398	(*) error=true;;
	399	esac;;
[1]	400	(ibms) case $ndq in
	401	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	402	(*) error=true;;
	403	esac;;
	404	(ibmy) case $ndq in
	405	(parallel) error=false;;
	406	(*) error=true;;
	407	esac;;
[440]	408	(lckyoto) case $ndq in
	409	(eh\|ph) error=false;;
	410	(*) error=true;;
	411	esac;;
[191]	412	(lcsgib\|lcsgih) case $ndq in
[416]	413	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
[191]	414	(*) error=true;;
	415	esac;;
[1]	416	(lctit) case $ndq in
[129]	417	(novice\|sla1\|sla2\|sla3\|RAM64GB\|RAM128GB) error=false;;
[1]	418	(*) error=true;;
	419	esac;;
	420	(t3eb) case $ndq in
	421	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	422	(*) error=true;;
	423	esac;;
[251]	424	(necriam) case $ndq in
[253]	425	(SP\|SS\|P6) error=false;;
[251]	426	(*) error=true;;
	427	esac;;
[1]	428	(t3eh) case $ndq in
	429	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	430	(*) error=true;;
	431	esac;;
	432	(t3ej2\|t3ej5) case $ndq in
	433	(low\|normal\|high) error=false;;
	434	(*) error=true;;
	435	esac;;
	436	(t3es) case $ndq in
	437	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	438	(*) error=true;;
	439	esac;;
	440	(unics) case $ndq in
	441	(unics\|ht) error=false;;
	442	(*) error=true;;
	443	esac;;
	444	esac
	445	if [[ $error = true ]]
	446	then
	447	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	448	locat=parameter; exit
	449	else
	450	queue=$no_default_queue
	451	fi
	452	fi
	453
	454
	455
	456	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	457	# AUFTEILEN
	458	done=false
	459	while [[ $done = false ]]
	460	do
	461	if (( $cputime <= 0 ))
	462	then
	463	printf "\n +++ wrong cpu-time or cpu-time missing"
	464	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	465	printf "\n >>> "
	466	read cputime 1>/dev/null 2>&1
	467	else
	468	done=true
	469	fi
	470	done
	471	if [[ $remote_host = nech ]]
	472	then
	473	if (( tasks_per_node != 0 ))
	474	then
	475	(( cputime = cputime * tasks_per_node ))
	476	elif [[ $numprocs != 0 ]]
	477	then
	478	(( cputime = cputime * numprocs ))
	479	fi
	480	fi
	481	(( stunden = cputime / 3600 ))
	482	(( resttime = cputime - stunden * 3600 ))
	483	(( minuten = resttime / 60 ))
	484	(( sekunden = resttime - minuten * 60 ))
	485	timestring=${stunden}:${minuten}:${sekunden}
	486
	487
	488
	489	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	490	done=false
	491	while [[ $done = false ]]
	492	do
	493	if (( memory <= 0 ))
	494	then
	495	printf "\n +++ wrong memory demand or memory demand missing"
	496	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	497	printf "\n >>> "
	498	read memory 1>/dev/null 2>&1
	499	else
	500	done=true
	501	fi
	502	done
	503
[251]	504	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
[1]	505	then
	506	if (( tasks_per_node != 0 ))
	507	then
	508	(( Memory = memory * tasks_per_node / 1000 ))
	509	elif [[ $numprocs != 0 ]]
	510	then
	511	(( Memory = memory * numprocs / 1000 ))
	512	else
	513	(( Memory = memory / 1000 ))
	514	fi
	515	fi
	516
	517
	518	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	519	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	520	then
	521	(( memory = memory * threads_per_task ))
	522	fi
	523
	524
	525	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	526	if (( tasks_per_node != 0 ))
	527	then
[622]	528	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
[1]	529	fi
	530
[622]	531	# Calculate number of processes per node
	532	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	533
	534
	535	# HEADER-AUSGABE
	536	if [[ $verify = true ]]
	537	then
	538	printf "\n\n"
	539	printf "#--------------------------------------------------------------# \n"
	540	spalte1=SUBJOB;spalte2=$(date)
	541	printf "\| $spalte1$spalte2 \| \n"
	542	printf "\| \| \n"
	543	printf "\| values of parameters/options: \| \n"
	544	spalte1=local_host$punkte; spalte2=$punkte$local_host
	545	printf "\| $spalte1$spalte2 \| \n"
	546	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	547	printf "\| $spalte1$spalte2 \| \n"
	548	spalte1=queue$punkte; spalte2=$punkte$queue
	549	printf "\| $spalte1$spalte2 \| \n"
	550	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	551	printf "\| $spalte1$spalte2 \| \n"
	552	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	553	printf "\| $spalte1$spalte2 \| \n"
	554	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	555	printf "\| $spalte1$spalte2 \| \n"
	556	printf "#--------------------------------------------------------------# \n\n"
	557
	558
	559	# KONTROLLABFRAGE, OB ALLES O.K.
	560	antwort="dummy"
	561	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	562	do
	563	read antwort?" >>> continue (y/n) ? "
	564	done
	565	if [[ $antwort = n \|\| $antwort = N ]]
	566	then
	567	locat=verify; exit
	568	fi
	569	printf "\n"
	570	fi
	571
	572
	573
	574	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	575	kennung=$RANDOM
	576	job_on_remhost=${job_name}_${kennung}_$local_host
	577	job_to_send=job_to_send_$kennung
	578	if [[ $delete_dayfile = false ]]
	579	then
	580	remote_dayfile=${local_host}_${job_name}_result_$kennung
	581	local_dayfile=${remote_host}_${job_name}
	582	else
	583	remote_dayfile=/dev/null
	584	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	585	then
	586	notification='# @ notification = never'
	587	fi
	588	fi
	589
	590
	591
[622]	592	# Generate the batch job scripts (qsub/msub/LoadLeveler)
[1]	593	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	594	then
	595
[622]	596	# General LoadLeveler settings
	597	execute_in_shell="#!/bin/ksh"
	598	use_shell="# @ shell = /bin/ksh"
	599	consumable_memory="ConsumableMemory($memory mb)"
	600	class="# @ class = $queue"
	601	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	602	network_to_use="# @ network.mpi = sn_all,shared,us"
	603	data_limit="# @ data_limit = 1.76gb"
	604	image_size="# @ image_size = 50"
[312]	605
[622]	606
[312]	607	if [[ $remote_host = ibmh ]]
[1]	608	then
[312]	609	data_limit=""
	610	network_to_use=""
	611	class=""
	612	environment=""
[622]	613	elif [[ $remote_host = ibmku ]]
	614	then
	615	execute_in_shell="#!/usr/bin/ksh"
	616	use_shell="# @ shell = /usr/bin/ksh"
	617	consumable_memory=""
	618	environment=""
	619	network_to_use="# @ network.mpi = sn_all,shared,us"
	620	data_limit=""
	621	image_size=""
	622	elif [[ $remote_host = ibms ]]
	623	then
	624	network_to_use="# @ network.mpi = csss,shared,us"
	625	elif [[ $remote_host = ibmy ]]
	626	then
	627	consumable_memory=""
	628	network_to_use=""
[1]	629	fi
	630
	631	cat > $job_to_send << %%END%%
[622]	632	$execute_in_shell
	633	$use_shell
[1]	634
	635	# @ job_type = parallel
	636	# @ job_name = palm
	637	# @ wall_clock_limit = ${timestring},$timestring
	638	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	639	# @ output = $remote_dayfile
	640	# @ error = $remote_dayfile
[622]	641	$image_size
[312]	642	$class
	643	$environment
[1]	644	$network_to_use
	645	$data_limit
	646	$notification
	647
	648	%%END%%
	649
	650	if (( nodes > 0 ))
	651	then
	652
	653	cat >> $job_to_send << %%END%%
	654	# @ node = $nodes
[622]	655	# @ tasks_per_node = $processes_per_node
[1]	656	# @ node_usage = $node_usage
	657	# @ queue
	658
	659	%%END%%
	660
	661	else
	662
	663	if [[ $remote_host != ibmy ]]
	664	then
	665
	666	cat >> $job_to_send << %%END%%
	667	# @ blocking = unlimited
	668	# @ total_tasks = $numprocs
	669	# @ node_usage = $node_usage
	670	# @ queue
	671
	672	%%END%%
	673
	674	else
	675
	676	cat >> $job_to_send << %%END%%
	677	# @ node = 1
	678	# @ total_tasks = $numprocs
	679	# @ queue
	680
	681	%%END%%
	682
	683	fi
	684
	685	fi
	686
	687	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	688	then
	689
	690	cat > $job_to_send << %%END%%
	691	#!/bin/ksh
	692
	693	# @ job_type = serial
	694	# @ node_usage = $node_usage
	695	# @ job_name = palm
	696	# @ wall_clock_limit = ${timestring},$timestring
	697	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	698	# @ output = $remote_dayfile
	699	# @ error = $remote_dayfile
[312]	700	$class
[1]	701	$notification
	702
	703	# @ queue
	704
	705	%%END%%
	706
[108]	707	elif [[ $remote_host = lcfimm ]]
	708	then
	709
	710	if [[ $numprocs != 0 ]]
	711	then
	712	cat > $job_to_send << %%END%%
	713	#!/bin/ksh
	714	#PBS -N $job_name
[552]	715	#PBS -A $project_account
[108]	716	#PBS -l walltime=$timestring
[622]	717	#PBS -l nodes=${nodes}:ppn=$processes_per_node
[108]	718	#PBS -l pmem=${memory}mb
	719	#PBS -m abe
	720	#PBS -o $remote_dayfile
	721	#PBS -j oe
	722	mpd &
	723
	724	%%END%%
	725
[168]	726	else
	727	cat > $job_to_send << %%END%%
	728	#!/bin/ksh
	729	#PBS -N $job_name
[552]	730	#PBS -A $project_account
[168]	731	#PBS -l walltime=$timestring
	732	#PBS -l ncpus=1
	733	#PBS -l pmem=${memory}mb
	734	#PBS -m abe
	735	#PBS -o $remote_dayfile
	736	#PBS -j oe
	737
	738	%%END%%
	739
	740	fi
	741
[368]	742	elif [[ $remote_host = lck ]]
	743	then
	744
	745	if [[ $numprocs != 0 ]]
	746	then
	747	cat > $job_to_send << %%END%%
	748	#!/bin/ksh
	749	#PBS -N $job_name
	750	#PBS -l walltime=$timestring
	751	#PBS -l ncpus=$numprocs
	752	#PBS -l pmem=${memory}mb
	753	#PBS -o $remote_dayfile
	754	#PBS -j oe
	755
	756	mpd &
	757
	758	%%END%%
	759
	760	else
	761	cat > $job_to_send << %%END%%
	762	#!/bin/ksh
	763	#PBS -N $job_name
	764	#PBS -l walltime=$timestring
	765	#PBS -l ncpus=1
	766	#PBS -l pmem=${memory}mb
	767	#PBS -o $remote_dayfile
	768	#PBS -j oe
	769
	770	%%END%%
	771
	772	fi
	773
[181]	774	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
[179]	775	then
	776
[376]	777	if [[ "$sgi_feature" != "" ]]
	778	then
	779	feature_directive="#PBS -l feature=$sgi_feature"
	780	else
	781	feature_directive=""
	782	fi
[399]	783
[416]	784	if [[ $queue = dataq \|\| $queue = permq ]]
[399]	785	then
	786	feature_directive="#PBS -l feature=data"
	787	fi
[376]	788
[416]	789	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
[191]	790	then
	791	queue_directive="#PBS -q $queue"
	792	else
	793	queue_directive=""
	794	fi
	795
[352]	796	if [[ $email_notification = none ]]
	797	then
	798	email_directive=""
	799	else
	800	email_directive="#PBS -M $email_notification"
	801	fi
	802
[179]	803	if [[ $numprocs != 0 ]]
	804	then
	805	cat > $job_to_send << %%END%%
[181]	806	#!/bin/bash
[179]	807	#PBS -N $job_name
	808	#PBS -l walltime=$timestring
[622]	809	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[181]	810	#PBS -l naccesspolicy=$node_usage
[179]	811	#PBS -o $remote_dayfile
	812	#PBS -j oe
[376]	813	$feature_directive
[191]	814	$queue_directive
[352]	815	$email_directive
[179]	816
[622]	817	eval \`/sw/swdist/bin/modulesinit\`
	818	#. /usr/share/modules/init/bash
[493]	819	$module_calls
[374]	820
[181]	821	echo ld_library_path=\$LD_LIBRARY_PATH
[179]	822
	823	%%END%%
	824
	825	else
	826	cat > $job_to_send << %%END%%
	827	#PBS -S /bin/bash
	828	#PBS -N $job_name
	829	#PBS -l walltime=$timestring
	830	#PBS -l ncpus=1
	831	#PBS -o $remote_dayfile
[475]	832	#PBS -j oe
[400]	833	$queue_directive
	834	$email_directive
[179]	835
[622]	836	eval \`/sw/swdist/bin/modulesinit\`
	837	#. /usr/share/modules/init/bash
[493]	838	$module_calls
[475]	839
[179]	840	%%END%%
	841
	842	fi
	843
[164]	844	elif [[ $remote_host = lcxt4 ]]
	845	then
	846
	847	if [[ $numprocs != 0 ]]
	848	then
	849	cat > $job_to_send << %%END%%
	850	#!/bin/ksh
	851	#PBS -S /bin/ksh
	852	#PBS -N $job_name
[552]	853	#PBS -A $project_account
[206]	854	#PBS -j oe
[164]	855	#PBS -l walltime=$timestring
	856	#PBS -l mppwidth=${numprocs}
[622]	857	#PBS -l mppnppn=${processes_per_node}
[164]	858	#PBS -m abe
	859	#PBS -o $remote_dayfile
[492]	860	$email_directive
[164]	861
[343]	862	. /opt/modules/default/init/ksh
[493]	863	$module_calls
[343]	864
[164]	865	%%END%%
	866
[108]	867	else
	868	cat > $job_to_send << %%END%%
	869	#!/bin/ksh
[168]	870	#PBS -S /bin/ksh
[108]	871	#PBS -N $job_name
[552]	872	#PBS -A $project_account
[206]	873	#PBS -j oe
[108]	874	#PBS -l walltime=$timestring
	875	#PBS -l ncpus=1
	876	#PBS -l pmem=${memory}mb
	877	#PBS -m abe
[492]	878	$email_directive
[108]	879	#PBS -o $remote_dayfile
	880
[343]	881	. /opt/modules/default/init/ksh
[493]	882	$module_calls
[343]	883
[108]	884	%%END%%
	885
	886	fi
	887
[440]	888	elif [[ $remote_host = lckyoto ]]
[437]	889	then
	890
[440]	891	cat > $job_to_send << %%END%%
	892	#!/bin/ksh
	893	# @\$-o $remote_dayfile
	894	# @\$-eo -oi
	895	# @\$-lP 16
	896	# @\$-lp 1
	897	# @\$-lm 28gb -llm unlimited -ls unlimited
	898	# @\$-q $queue
	899	# @\$-Pvn abs_pack
	900	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	901	#. /thin/local/etc/setprofile/intel-11.0.sh
	902	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	903	. ~/.myprofile
	904	#. /home2/t/t51254/palm/current_version/myprofile
	905	#. /thin/apps/pgi/mpi.sh
	906	#
	907	env
	908	#
	909	set -x
	910
	911	%%END%%
	912
	913	elif [[ $remote_host = lcxt5m ]]
	914	then
	915
[437]	916	if [[ $numprocs != 0 ]]
	917	then
	918	cat > $job_to_send << %%END%%
	919	#!/bin/ksh
	920	#PBS -S /bin/ksh
	921	#PBS -N $job_name
	922	#PBS -j oe
	923	#PBS -l walltime=$timestring
	924	#PBS -l mppwidth=${numprocs}
[622]	925	#PBS -l mppnppn=${processes_per_node}
[437]	926	#PBS -m abe
	927	#PBS -o $remote_dayfile
	928
	929	. /opt/modules/default/init/ksh
[493]	930	$module_calls
[437]	931
	932	%%END%%
	933
	934	else
	935	cat > $job_to_send << %%END%%
	936	#!/bin/ksh
	937	#PBS -S /bin/ksh
	938	#PBS -N $job_name
	939	#PBS -j oe
	940	#PBS -l walltime=$timestring
	941	#PBS -l ncpus=1
	942	#PBS -l pmem=${memory}mb
	943	#PBS -m abe
	944	#PBS -o $remote_dayfile
	945
	946	. /opt/modules/default/init/ksh
[493]	947	$module_calls
[437]	948
	949	%%END%%
	950
	951	fi
	952
[1]	953	elif [[ $remote_host = nech ]]
	954	then
	955
	956	if (( nodes > 1 ))
	957	then
	958	cat > $job_to_send << %%END%%
	959	#!/bin/ksh
[622]	960	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	961	#PBS -l ${qsubmem}=${Memory}gb
	962	#PBS -b $nodes
	963	#PBS -o $remote_dayfile
	964	#PBS -N palm
	965	#PBS -j o
	966	#PBS -T mpisx
	967
	968	%%END%%
	969
	970	elif [[ $numprocs != 0 ]]
	971	then
	972	cat > $job_to_send << %%END%%
	973	#!/bin/ksh
[622]	974	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	975	#PBS -l ${qsubmem}=${Memory}gb
	976	#PBS -o $remote_dayfile
	977	#PBS -N palm
	978	#PBS -j o
	979
	980	%%END%%
	981
	982	else
	983	cat > $job_to_send << %%END%%
	984	#!/bin/ksh
	985	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	986	#PBS -o $remote_dayfile
	987	#PBS -j o
	988
	989	%%END%%
	990
	991	fi
	992
[251]	993	elif [[ $remote_host = necriam ]]
[35]	994	then
	995
	996	if (( nodes > 1 ))
	997	then
	998	cat > $job_to_send << %%END%%
	999	#!/bin/ksh
	1000	#PBS -b $nodes
	1001	#PBS -o $remote_dayfile
[253]	1002	#PBS -N $job_name
[35]	1003	#PBS -j o
[251]	1004	#PBS -v MPIPROGINV=YES
[35]	1005
	1006	%%END%%
	1007
	1008	elif [[ $numprocs != 0 ]]
	1009	then
	1010	cat > $job_to_send << %%END%%
	1011	#!/bin/ksh
	1012	#PBS -q ${queue}
	1013	#PBS -o $remote_dayfile
[253]	1014	#PBS -N $job_name
[35]	1015	#PBS -j o
[251]	1016	#PBS -v MPIPROGINV=YES
[35]	1017
	1018	%%END%%
	1019
	1020	else
	1021	cat > $job_to_send << %%END%%
	1022	#!/bin/ksh
	1023	#PBS -o $remote_dayfile
	1024	#PBS -j o
	1025
	1026	%%END%%
	1027
	1028	fi
	1029
[1]	1030	elif [[ $remote_host = lctit ]]
	1031	then
	1032	cat > $job_to_send << %%END%%
	1033	#!/bin/bash
	1034	#$ -S /bin/bash
	1035	cd $job_catalog
[69]	1036	export PATH=$PALM_BIN:\$PATH
	1037	echo \$PATH
[1]	1038
	1039	%%END%%
	1040
	1041	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
[118]	1042	# submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
[122]	1043	submcom="$submcom -g $group_number -N $job_name -rt 4320 -sgeout $remote_dayfile -q $node_usage "
[1]	1044
	1045	else
	1046
	1047	cat > $job_to_send << %%END%%
	1048	# @\$-q ${queue}
	1049	# @\$-l${qsubtime} $timestring
	1050	# @\$-l${qsubmem} ${memory}mb
	1051	# @\$-o $remote_dayfile
	1052	# @\$-eo
	1053
	1054	%%END%%
	1055
	1056	fi
	1057
	1058
	1059	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	1060	# BEI EXIT VERANLASSEN
	1061	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	1062	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	1063	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1064	then
	1065	echo "set +vx" >> $job_to_send
	1066	echo "trap '" >> $job_to_send
	1067	echo "set +vx" >> $job_to_send
[181]	1068	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
[1]	1069	then
[622]	1070	if [[ $remote_host = ibmh ]]
[1]	1071	then
	1072	return_queue=c1
[622]	1073	elif [[ $remote_host = ibmku ]]
	1074	then
	1075	return_queue=sdbg2
[1]	1076	elif [[ $remote_host = ibms ]]
	1077	then
	1078	return_queue=p_normal
	1079	elif [[ $remote_host = ibmy ]]
	1080	then
	1081	return_queue=serial
[325]	1082	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
	1083	then
[326]	1084	return_queue=serialq
[1]	1085	elif [[ $remote_host = lctit ]]
	1086	then
[118]	1087	return_queue=sla3
[251]	1088	elif [[ $remote_host = necriam ]]
[1]	1089	then
[253]	1090	return_queue=SP
[1]	1091	else
	1092	return_queue=unknown
	1093	fi
	1094
	1095	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1096	then
	1097
[622]	1098	if [[ $remote_host = ibmku ]]
	1099	then
	1100	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1101	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1102	else
	1103	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1104	fi
[1]	1105	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	1106	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	1107	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	1108	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	1109	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	1110	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
[312]	1111	if [[ $host != "ibmh" ]]
	1112	then
	1113	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	1114	fi
[1]	1115	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	1116	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	1117
	1118	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	1119	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	1120
	1121	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
	1122	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
[622]	1123	if [[ $remote_host = ibmku ]]
	1124	then
	1125	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
	1126	fi
[1]	1127	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	1128
	1129	elif [[ $remote_host = nech ]]
	1130	then
	1131	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1132	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1133	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1134	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1135	echo "#PBS -j o" >> $job_to_send
	1136	echo " " >> $job_to_send
	1137	echo "set -x" >> $job_to_send
	1138	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1139	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1140	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1141	echo "%%END%%" >> $job_to_send
	1142
[251]	1143	elif [[ $remote_host = necriam ]]
[35]	1144	then
	1145	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1146	echo "#PBS -q $return_queue" >> $job_to_send
	1147	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1148	echo "#PBS -j o" >> $job_to_send
	1149	echo " " >> $job_to_send
	1150	echo "set -x" >> $job_to_send
	1151	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1152	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1153	echo "%%END%%" >> $job_to_send
	1154
[181]	1155	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1156	then
	1157	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1158	echo "#!/bin/bash" >> $job_to_send
	1159	echo "#PBS -N job_protocol_transfer" >> $job_to_send
[325]	1160	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[181]	1161	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[366]	1162	echo "#PBS -l feature=data" >> $job_to_send
[181]	1163	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1164	echo "#PBS -j oe" >> $job_to_send
	1165	echo " " >> $job_to_send
	1166	echo ". /usr/share/modules/init/bash" >> $job_to_send
	1167	echo "set -x" >> $job_to_send
	1168	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1169	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1170	echo "%%END%%" >> $job_to_send
	1171
[1]	1172	elif [[ $remote_host = lctit ]]
	1173	then
	1174	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1175	echo "set -x" >> $job_to_send
	1176	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
	1177	echo "cd $job_catalog" >> $job_to_send
	1178	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1179	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1180	echo "%%END%%" >> $job_to_send
	1181
	1182	else
	1183
	1184	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1185	echo "# @\\\$-q $return_queue" >> $job_to_send
	1186	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1187	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1188	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1189	then
	1190	echo "# @\$-l mpp_p=0" >> $job_to_send
	1191	fi
	1192	echo '# @\$-lF 10mb' >> $job_to_send
	1193	# echo '# @\$-o /dev/null' >> $job_to_send
	1194	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1195	echo '# @\\\$-eo' >> $job_to_send
	1196	echo " " >> $job_to_send
	1197	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1198	then
	1199	echo "set +vx" >> $job_to_send
	1200	echo ". .profile" >> $job_to_send
	1201	fi
	1202	echo "set -x" >> $job_to_send
	1203	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
	1204	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1205	echo "%%END%%" >> $job_to_send
	1206	fi
	1207
	1208	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1209	then
	1210	echo "llsubmit scpjob.$kennung" >> $job_to_send
[181]	1211	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1212	then
	1213	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1214	echo "msub scpjob.$kennung" >> $job_to_send
[1]	1215	elif [[ $remote_host = lctit ]]
	1216	then
	1217	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1218	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
	1219	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
	1220	echo "sleep 10" >> $job_to_send
	1221	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1222	then
	1223	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	1224	elif [[ $remote_host = t3es ]]
	1225	then
	1226	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
	1227	else
	1228	echo "qsub scpjob.$kennung" >> $job_to_send
	1229	fi
[622]	1230	if [[ $remote_host != ibmku ]]
	1231	then
	1232	echo "rm scpjob.$kennung" >> $job_to_send
	1233	fi
[1]	1234	if [[ $remote_host = nech ]]
	1235	then
	1236	echo "cd -" >> $job_to_send
	1237	fi
	1238	else
	1239	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1240	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	1241	fi
	1242	echo "set -x" >> $job_to_send
	1243	echo " ' exit" >> $job_to_send
	1244	echo "set -x" >> $job_to_send
	1245	fi
	1246
	1247
	1248
	1249	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	1250	cat $file_to_send >> $job_to_send
[69]	1251
[1]	1252	if [[ $remote_host = ibm ]]
	1253	then
	1254	echo " " >> $job_to_send
	1255	echo "exit" >> $job_to_send
	1256	fi
[622]	1257	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
[69]	1258	then
	1259	echo " " >> $job_to_send
	1260	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1261	fi
[1]	1262
	1263
	1264
	1265	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	1266	if [[ -z $remote_user ]]
	1267	then
	1268	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	1269	then
	1270	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	1271	fi
	1272	fi
	1273
	1274
	1275
	1276	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	1277	if [[ $no_submit = false ]]
	1278	then
	1279	if [[ $remote_host != $local_host ]]
	1280	then
	1281	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	1282	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	1283	then
[82]	1284	job_catalog_save=$job_catalog
	1285	job_catalog=job_queue
	1286	elif [[ $remote_host = nech ]]
	1287	then
	1288	job_catalog_save=$job_catalog
	1289	job_catalog=/hpf/b/${remote_user}/job_queue
	1290	fi
	1291	if [[ $local_host = decalpha ]]
	1292	then
	1293	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
	1294	# PASSWORT AB
	1295	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
	1296	elif [[ $remote_host = nech ]]
	1297	then
	1298	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	1299	# TRANSFERIERT WERDEN
	1300	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1301	else
[82]	1302	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	1303	fi
[82]	1304	if [[ $? = 1 ]]
	1305	then
	1306	locat=scp; exit
	1307	fi
	1308	if [[ $remote_host = ibms ]]
	1309	then
	1310	job_catalog=$job_catalog_save
	1311	fi
[1]	1312	[[ $verify = true ]] && printf "\n >>> finished\n"
	1313	else
	1314	eval job_catalog=$job_catalog
	1315	cp $job_to_send ${job_catalog}/$job_on_remhost
	1316	fi
	1317
	1318
	1319
	1320	# NQS- BZW. LOADLEVELER-JOB STARTEN
	1321	if [[ $remote_host != $local_host ]]
	1322	then
	1323	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[82]	1324	if [[ $remote_host != lctit ]]
[1]	1325	then
[372]	1326	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
	1327	then
	1328	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
	1329	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
[622]	1330	elif [[ $remote_host = ibmku ]]
	1331	then
	1332	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[372]	1333	else
	1334	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
	1335	fi
[1]	1336	else
[622]	1337	# TIT ERLAUBT NUR DIE AUSFUEHRUNG GANZ BESTIMMTER KOMMANDOS
[82]	1338	# MIT SSH, DESHALB AUFRUF PER PIPE
	1339	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
	1340	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	1341	echo "first try" > send_protocol
	1342	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
	1343	do
	1344	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
	1345	then
	1346	printf "\n trying to submit job to TIT cluster..."
	1347	else
	1348	printf "\n +++ failed ... trying to submit again ..."
	1349	fi
	1350	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
	1351	cat send_protocol
	1352	done
	1353	sleep 10
	1354	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	1355	echo "$submcom $job_on_remhost"
	1356	rm send_protocol
	1357	fi
[1]	1358
	1359	[[ $verify = true ]] && printf " >>> o.k.\n"
	1360	else
	1361	cd $job_catalog
[210]	1362	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
[1]	1363	then
	1364	eval $submcom $job_on_remhost
[367]	1365	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck ]]
[108]	1366	then
	1367	eval $submcom $job_on_remhost
	1368	echo "$submcom $job_on_remhost"
	1369	chmod u+x $job_on_remhost
[407]	1370
[1]	1371	elif [[ $local_host = nech ]]
	1372	then
	1373	if [[ $queue = default ]]
	1374	then
	1375	eval $submcom $job_on_remhost
	1376	else
	1377	eval $submcom -q $queue $job_on_remhost
	1378	fi
	1379	else
	1380	qsub $job_on_remhost
	1381	fi
[622]	1382
	1383	# Jobfile must not be deleted on lctit/ibmku!! This will be done
	1384	# only at the end of the job.
	1385	if [[ $local_host != lctit && $local_host != ibmku ]]
	1386	then
	1387	rm $job_on_remhost
	1388	fi
[1]	1389	cd - > /dev/null
	1390	fi
	1391	fi
	1392
	1393
	1394
	1395	# ABSCHLUSSARBEITEN
	1396
	1397	if [[ $no_submit = false ]]
	1398	then
	1399	rm $job_to_send
	1400	fi
	1401	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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source: palm/trunk/SCRIPTS/subjob @ 624

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