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subjob @ 563

Last change on this file since 563 was 555, checked in by raasch, 14 years ago

New:
---

Changed:

Documentation for surface_heatflux in case of prandtl_layer = .F. improved.

bugfix for wrong netcdf/3.6.3 module on lcsgi (mbuild, mrun)

Errors:

Bugfix in if statement (disturb_heatflux)

Bugfix: in 2201 statement: closing " was missing (interpret_config)

Bugfix: default setting of nzb_local for flat topography (init_grid)

Bugfix: wrong dimension used for ts_value_l (user_statistics)

disturb_heatflux, init_grid, interpret_config, user_statistics

Property svn:keywords set to Id Rev

File size: 47.2 KB

Rev	Line
[1]	1	#!/bin/ksh
[82]	2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
[169]	3	# $Id: subjob 555 2010-09-07 07:32:53Z raasch $
[1]	4
	5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
	6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
	7	# Host zurueckgeschickt werden sollen
	8
	9
	10	# letzte Aenderung:
	11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
	12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
	13	# 06/02/98 - Siggi - berte validiert
	14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
	15	# moeglich
	16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
	17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
	18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
	19	# allgemeine Anpassungen fuer ibm-Rechner
	20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
	21	# Ruecktransfer des Jobprotokolls fuer diese
	22	# Maschine abgeschaltet
	23	# 31/10/02 - Siggi - berni validiert
	24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
	25	# 08/11/02 - Siggi - quanero validiert
	26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
	27	# 23/01/03 - Siggi - hostname nobel changed to nobela
	28	# 06/02/03 - Siggi - gregale validated
	29	# 12/02/03 - Siggi - orkan and maestro validated
	30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
	31	# 12/03/03 - Siggi - nec at DKRZ validated
	32	# 13/03/03 - Siggi - new nqs resource variable Memory
	33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
	34	# node
	35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
	36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
	37	# cxxl added to ibmh
	38	# 29/08/03 - Siggi - changes in job queues and communication system on
	39	# ibms
	40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
	41	# 30/10/03 - Siggi - nech is not supported any more
	42	# 10/11/03 - Siggi - nech2 renamed to nech
	43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
	44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
	45	# 31/03/04 - Siggi - new option -N for node usage
	46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
	47	# due to error in ssh installation (otherwise a prompt
	48	# for the password appears)
	49	# 23/07/04 - Siggi - changes due to the new berni configuration
	50	# (federation switch)
	51	# 01/09/04 - Gerald new job-classes on hanni
	52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
	53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
	54	# 03/12/04 - Siggi - notification on ibm switched of in case of
	55	# delete_dayfile = true, node usage in cdev set to
	56	# shared
	57	# 16/02/05 - Gerald hababai validated
	58	# 29/03/05 - Micha - new job class channi on hanni
	59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
	60	# on ibms
	61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
	62	# p_normal
	63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
	64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
	65	# "sn_all", new job class cexp
	66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
	67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
	68	# hurricane (with -X0)
	69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
	70	# added
	71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
	72	# 09/02/06 - Siggi - ibmy admitted
	73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
	74	# 13/04/06 - Siggi - ostria admitted
	75	# 18/04/06 - Siggi - new option -O for OpenMP usage
	76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
	77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
	78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
	79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
	80	# 28/11/06 - Siggi - levanto admitted
[5]	81	# 13/02/07 - Siggi - hpmuk releated code removed
[35]	82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
[82]	83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
[102]	84	# 27/07/07 - Siggi - autan admitted
[108]	85	# 03/08/07 - Marcus- lcfimm admitted
[113]	86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
[118]	87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
	88	# suggestions
[122]	89	# 19/10/07 - Marcus- add new optional argument -g group_number
[125]	90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
[129]	91	# 30/10/07 - Marcus- further adjustments for queues on lctit
[164]	92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
	93	# Science)
[179]	94	# 14/07/08 - Siggi - adjustments for lcsgih
[205]	95	# 23/09/08 - Gerald- paesano admitted
[206]	96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
[251]	97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
[292]	98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
[312]	99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
[325]	100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
[343]	101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
[352]	102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
[366]	103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
	104	# now run on the data nodes (feature=data)
[367]	105	# 25/08/09 - BjornM- adapted for lck
[372]	106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
[376]	107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
	108	# set in the config file by the user
[416]	109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
	110	# adding special1q
[407]	111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
[416]	112	# 16/10/09 - Carolin-adding permq
[440]	113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	114	# 03/02/10 - Siggi - bug in serial jobs removed
[492]	115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
	116	# notification)
[493]	117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
	118	# module_calls
[551]	119	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
	120	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
[552]	121	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
	122	# lcxt4
[1]	123
[437]	124
[552]	125
[1]	126	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
[352]	127	delete_dayfile=false
	128	email_notification=none
[122]	129	group_number=none
[1]	130	locat=normal
	131	no_default_queue=none
	132	no_submit=false
	133	job_catalog="~/job_queue"
	134	job_name=none
	135	local_user=$LOGNAME
	136	node_usage=shared
[475]	137	numprocs=0
[1]	138	punkte="..........................................................."
	139	submcom=qsub
	140	queue=default
	141	remote_host=none
	142	remote_user=""
	143	verify=true
	144
	145	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
	146	typeset -i inumprocs nodes=0 tasks_per_node=0 threads_per_task=1
	147	typeset -L20 spalte1
	148	typeset -R40 spalte2
	149	typeset -L60 spalte3
	150
	151
	152
	153	# FEHLERBEHANDLUNG
	154	# BEI EXIT:
	155	trap 'if [[ $locat != normal ]]
	156	then
	157	case $locat in
	158	(option) printf "\n --> available optios can be displayed"
	159	printf " by typing:"
	160	printf "\n \"subjob ?\" \n";;
	161	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	162	(*) printf "\n +++ unknown error"
	163	printf "\n please inform S. Raasch!\n"
	164	esac
	165	[[ -f $job_to_send ]] && rm $job_to_send
	166	printf "\n\n+++ SUBJOB killed \n\n"
	167	fi' exit
	168
	169
	170	# BEI TERMINAL-BREAK:
	171	trap '[[ -f $job_to_send ]] && rm $job_to_send
	172	printf "\n\n+++ SUBJOB killed \n\n"
	173	exit
	174	' 2
	175
	176
	177
	178
	179	# LOKALEN HOSTNAMEN FESTSTELLEN
	180	local_host=$(hostname)
	181
	182
	183
	184	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	185	# UEBERHAUPT ZULAESSIG IST
	186	case $local_host in
	187	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	188	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	189	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[400]	190	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
	191	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
	192	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
	193	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
	194	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
[291]	195	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[1]	196	(breg-en0\|berni-en0) local_addres=130.73.230.10; local_host=ibmb;;
[12]	197	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[292]	198	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[372]	199	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
[108]	200	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
[1]	201	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	202	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[108]	203	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
[367]	204	(node*) local_addres=165.132.26.61 local_host=lck;;
[101]	205	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[1]	206	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
	207	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
[5]	208	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	209	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[164]	210	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
[400]	211	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
	212	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
	213	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
	214	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
[292]	215	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
[210]	216	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
[440]	217	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
[312]	218	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
[5]	219	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
[407]	220	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
[5]	221	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
	222	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[437]	223	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
[164]	224	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
[1]	225	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	226	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	227	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
[205]	228	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
[5]	229	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[1]	230	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
	231	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
[259]	232	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
[181]	233	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
[196]	234	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
[1]	235	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
	236	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
	237	(*) printf "\n +++ \"$local_host\" unknown";
	238	printf "\n please inform S. Raasch!";
	239	locat=parameter; exit;;
	240	esac
	241
	242
	243
	244	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	245	remote_host=$local_host
	246
	247
	248
	249
	250	# PROZEDUROPTIONEN EINLESEN
[352]	251	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
[1]	252	do
	253	case $option in
	254	(c) job_catalog=$OPTARG;;
	255	(d) delete_dayfile=true;;
	256	(D) no_submit=true;;
[352]	257	(e) email_notification=$OPTARG;;
[125]	258	(g) group_number=$OPTARG;;
[1]	259	(h) remote_host=$OPTARG;;
	260	(m) memory=$OPTARG;;
	261	(n) job_name=$OPTARG;;
	262	(N) node_usage=$OPTARG;;
	263	(O) threads_per_task=$OPTARG;;
	264	(q) no_default_queue=$OPTARG;;
	265	(t) cputime=$OPTARG;;
	266	(T) tasks_per_node=$OPTARG;;
	267	(u) remote_user=$OPTARG;;
	268	(v) verify=false;;
	269	(X) numprocs=$OPTARG;;
	270	(\?) printf "\n +++ Option $OPTARG unknown \n";
	271	locat=option; exit;;
	272	esac
	273	done
	274
	275
	276	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	277	shift OPTIND-1; file_to_send=$1
	278
	279
	280	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	281	if [ "$1" = "?" ]
	282	then
	283	(printf "\n *** subjob can be called as follows:\n"
	284	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	285	printf "\n Description of available options:\n"
	286	printf "\n Option Description Default-Value"
	287	printf "\n -c job-input- and output-catalog ~/job_queue"
	288	printf "\n -d no job-protocol will be created ---"
	289	printf "\n -D only the job-file will be created ---"
	290	printf "\n -h execution host, available hosts: $remote_host"
[5]	291	printf "\n ibm, ibmb, ibmh, ibms, ibmy, lcmuk,"
[251]	292	printf "\n lctit, nech, necriam, unics"
[1]	293	printf "\n -m memory demand per process in MByte ---"
	294	printf "\n -n jobname <jobdatei>"
	295	printf "\n -O threads per task (for OpenMP usage) 1"
	296	printf "\n -q job-queue to be used default"
	297	printf "\n -t allowed cpu-time in seconds ---"
	298	printf "\n -T tasks per node (on parallel hosts) ---"
	299	printf "\n -u username on execution host from .netrc"
	300	printf "\n -v no prompt for confirmation ---"
	301	printf "\n -X # of processors (on parallel hosts) 1"
	302	printf "\n "
	303	printf "\n The only possible positional parameter is <jobfile>:"
	304	printf "\n The complete NQS-job must be provided here."
	305	printf "\n <jobfile>=? creates this outline\n\n") \| more
	306	exit
	307	fi
	308
	309
	310
	311	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	312	if [[ "$file_to_send" = "" ]]
	313	then
	314	printf "\n +++ job-file missing"
	315	locat=parameter; exit
	316	else
	317	if [[ -f $file_to_send ]]
	318	then
	319	true
	320	else
	321	printf "\n +++ job-file: "
	322	printf "\n $file_to_send"
	323	printf "\n does not exist"
	324	locat=parameter; exit
	325	fi
	326	fi
	327
	328
	329
	330	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	331	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	332	if [[ $job_name = none ]]
	333	then
	334	job_name=$file_to_send
	335	fi
	336	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	337	then
	338	printf "\n +++ job-file name: "
	339	printf "\n $job_name"
	340	printf "\n must not contain \"/\"-characters"
	341	locat=parameter; exit
	342	fi
	343
	344
	345
	346
	347	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	348	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	349	if [[ $remote_host = none ]]
	350	then
	351	printf "\n +++ host missing"
	352	locat=option; exit
	353	else
	354	case $remote_host in
[251]	355	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	356	(ibmb) queue=cpar; remote_addres=130.73.230.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[312]	357	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[251]	358	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	359	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	360	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
[440]	361	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
[540]	362	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
	363	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
[367]	364	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
[251]	365	(lctit) queue=lctit; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
[544]	366	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.4.9-snap.201005191035/bin/qsub;;
[437]	367	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
[251]	368	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
	369	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
	370	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	371	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	372	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	373	locat=parameter; exit;;
[1]	374	esac
	375	fi
	376
	377
	378	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	379	if [[ $no_default_queue != none ]]
	380	then
	381	error=false
	382	ndq=$no_default_queue
	383	case $remote_host in
	384	(ibm) case $ndq in
	385	(p690_express\|p690_standard\|p690_long) error=false;;
	386	(*) error=true;;
	387	esac;;
	388	(ibmb) case $ndq in
	389	(cdata\|cdev\|cexp\|c1\|cshare\|csolo\|cspec) error=false;;
	390	(*) error=true;;
	391	esac;;
	392	(ibmh) case $ndq in
[312]	393	(no_class) error=false;;
[1]	394	(*) error=true;;
	395	esac;;
	396	(ibms) case $ndq in
	397	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	398	(*) error=true;;
	399	esac;;
	400	(ibmy) case $ndq in
	401	(parallel) error=false;;
	402	(*) error=true;;
	403	esac;;
[440]	404	(lckyoto) case $ndq in
	405	(eh\|ph) error=false;;
	406	(*) error=true;;
	407	esac;;
[191]	408	(lcsgib\|lcsgih) case $ndq in
[416]	409	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
[191]	410	(*) error=true;;
	411	esac;;
[1]	412	(lctit) case $ndq in
[129]	413	(novice\|sla1\|sla2\|sla3\|RAM64GB\|RAM128GB) error=false;;
[1]	414	(*) error=true;;
	415	esac;;
	416	(t3eb) case $ndq in
	417	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	418	(*) error=true;;
	419	esac;;
[251]	420	(necriam) case $ndq in
[253]	421	(SP\|SS\|P6) error=false;;
[251]	422	(*) error=true;;
	423	esac;;
[1]	424	(t3eh) case $ndq in
	425	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	426	(*) error=true;;
	427	esac;;
	428	(t3ej2\|t3ej5) case $ndq in
	429	(low\|normal\|high) error=false;;
	430	(*) error=true;;
	431	esac;;
	432	(t3es) case $ndq in
	433	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	434	(*) error=true;;
	435	esac;;
	436	(unics) case $ndq in
	437	(unics\|ht) error=false;;
	438	(*) error=true;;
	439	esac;;
	440	esac
	441	if [[ $error = true ]]
	442	then
	443	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	444	locat=parameter; exit
	445	else
	446	queue=$no_default_queue
	447	fi
	448	fi
	449
	450
	451
	452	# KNOTENNUTZUNG IN ENTWICKLERQUEUE MUSS SHARED SEIN
	453	if [[ $node_usage != shared && $queue = cdev ]]
	454	then
	455	node_usage=shared
	456	fi
	457
	458
	459
	460	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	461	# AUFTEILEN
	462	done=false
	463	while [[ $done = false ]]
	464	do
	465	if (( $cputime <= 0 ))
	466	then
	467	printf "\n +++ wrong cpu-time or cpu-time missing"
	468	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	469	printf "\n >>> "
	470	read cputime 1>/dev/null 2>&1
	471	else
	472	done=true
	473	fi
	474	done
	475	if [[ $remote_host = nech ]]
	476	then
	477	if (( tasks_per_node != 0 ))
	478	then
	479	(( cputime = cputime * tasks_per_node ))
	480	elif [[ $numprocs != 0 ]]
	481	then
	482	(( cputime = cputime * numprocs ))
	483	fi
	484	fi
	485	(( stunden = cputime / 3600 ))
	486	(( resttime = cputime - stunden * 3600 ))
	487	(( minuten = resttime / 60 ))
	488	(( sekunden = resttime - minuten * 60 ))
	489	timestring=${stunden}:${minuten}:${sekunden}
	490
	491
	492
	493	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	494	done=false
	495	while [[ $done = false ]]
	496	do
	497	if (( memory <= 0 ))
	498	then
	499	printf "\n +++ wrong memory demand or memory demand missing"
	500	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	501	printf "\n >>> "
	502	read memory 1>/dev/null 2>&1
	503	else
	504	done=true
	505	fi
	506	done
	507
[251]	508	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
[1]	509	then
	510	if (( tasks_per_node != 0 ))
	511	then
	512	(( Memory = memory * tasks_per_node / 1000 ))
	513	elif [[ $numprocs != 0 ]]
	514	then
	515	(( Memory = memory * numprocs / 1000 ))
	516	else
	517	(( Memory = memory / 1000 ))
	518	fi
	519	fi
	520
	521
	522	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	523	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	524	then
	525	(( memory = memory * threads_per_task ))
	526	fi
	527
	528
	529	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	530	if (( tasks_per_node != 0 ))
	531	then
[377]	532	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	533	then
	534	(( nodes = numprocs / tasks_per_node ))
	535	else
	536	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	537	fi
[1]	538	fi
	539
	540
	541
	542	# HEADER-AUSGABE
	543	if [[ $verify = true ]]
	544	then
	545	printf "\n\n"
	546	printf "#--------------------------------------------------------------# \n"
	547	spalte1=SUBJOB;spalte2=$(date)
	548	printf "\| $spalte1$spalte2 \| \n"
	549	printf "\| \| \n"
	550	printf "\| values of parameters/options: \| \n"
	551	spalte1=local_host$punkte; spalte2=$punkte$local_host
	552	printf "\| $spalte1$spalte2 \| \n"
	553	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	554	printf "\| $spalte1$spalte2 \| \n"
	555	spalte1=queue$punkte; spalte2=$punkte$queue
	556	printf "\| $spalte1$spalte2 \| \n"
	557	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	558	printf "\| $spalte1$spalte2 \| \n"
	559	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	560	printf "\| $spalte1$spalte2 \| \n"
	561	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	562	printf "\| $spalte1$spalte2 \| \n"
	563	printf "#--------------------------------------------------------------# \n\n"
	564
	565
	566	# KONTROLLABFRAGE, OB ALLES O.K.
	567	antwort="dummy"
	568	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	569	do
	570	read antwort?" >>> continue (y/n) ? "
	571	done
	572	if [[ $antwort = n \|\| $antwort = N ]]
	573	then
	574	locat=verify; exit
	575	fi
	576	printf "\n"
	577	fi
	578
	579
	580
	581	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	582	kennung=$RANDOM
	583	job_on_remhost=${job_name}_${kennung}_$local_host
	584	job_to_send=job_to_send_$kennung
	585	if [[ $delete_dayfile = false ]]
	586	then
	587	remote_dayfile=${local_host}_${job_name}_result_$kennung
	588	local_dayfile=${remote_host}_${job_name}
	589	else
	590	remote_dayfile=/dev/null
	591	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	592	then
	593	notification='# @ notification = never'
	594	fi
	595	fi
	596
	597
	598
	599	# QSUB- ODER LL-KOMMANDOS BZW. SKRIPTE GENERIEREN
	600	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	601	then
	602
	603	if [[ $remote_host = ibmy ]]
	604	then
	605	consumable_memory=""
	606	else
	607	consumable_memory="ConsumableMemory($memory mb)"
	608	fi
[312]	609
	610	if [[ $remote_host = ibmh ]]
[1]	611	then
[312]	612	data_limit=""
	613	network_to_use=""
	614	class=""
	615	environment=""
[1]	616	else
[312]	617	class="# @ class = $queue"
	618	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	619	if [[ $queue = cdev ]]
[1]	620	then
[312]	621	data_limit="# @ data_limit = 1.76gb"
	622	network_to_use="# @ network.mpi = sn_all,shared,ip"
[1]	623	else
[312]	624	if [[ $remote_host = ibms ]]
	625	then
	626	network_to_use="# @ network.mpi = csss,shared,us"
	627	elif [[ $remote_host = ibmy ]]
	628	then
	629	network_to_use=""
	630	else
	631	network_to_use="# @ network.mpi = sn_all,shared,us"
	632	data_limit="# @ data_limit = 1.76gb"
	633	fi
[1]	634	fi
	635	fi
	636
	637	cat > $job_to_send << %%END%%
	638	#!/bin/ksh
[312]	639	# @ shell = /bin/ksh
[1]	640
	641	# @ job_type = parallel
	642	# @ job_name = palm
	643	# @ wall_clock_limit = ${timestring},$timestring
	644	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	645	# @ output = $remote_dayfile
	646	# @ error = $remote_dayfile
	647	# @ image_size = 50
[312]	648	$class
	649	$environment
[1]	650	$network_to_use
	651	$data_limit
	652	$notification
	653
	654	%%END%%
	655
	656	if (( nodes > 0 ))
	657	then
	658
	659	cat >> $job_to_send << %%END%%
	660	# @ node = $nodes
	661	# @ tasks_per_node = $tasks_per_node
	662	# @ node_usage = $node_usage
	663	# @ queue
	664
	665	%%END%%
	666
	667	else
	668
	669	if [[ $remote_host != ibmy ]]
	670	then
	671
	672	cat >> $job_to_send << %%END%%
	673	# @ blocking = unlimited
	674	# @ total_tasks = $numprocs
	675	# @ node_usage = $node_usage
	676	# @ queue
	677
	678	%%END%%
	679
	680	else
	681
	682	cat >> $job_to_send << %%END%%
	683	# @ node = 1
	684	# @ total_tasks = $numprocs
	685	# @ queue
	686
	687	%%END%%
	688
	689	fi
	690
	691	fi
	692
	693	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	694	then
	695
	696	cat > $job_to_send << %%END%%
	697	#!/bin/ksh
	698
	699	# @ job_type = serial
	700	# @ node_usage = $node_usage
	701	# @ job_name = palm
	702	# @ wall_clock_limit = ${timestring},$timestring
	703	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	704	# @ output = $remote_dayfile
	705	# @ error = $remote_dayfile
[312]	706	$class
[1]	707	$notification
	708
	709	# @ queue
	710
	711	%%END%%
	712
[108]	713	elif [[ $remote_host = lcfimm ]]
	714	then
	715
	716	if [[ $numprocs != 0 ]]
	717	then
	718	cat > $job_to_send << %%END%%
	719	#!/bin/ksh
	720	#PBS -N $job_name
[552]	721	#PBS -A $project_account
[108]	722	#PBS -l walltime=$timestring
	723	#PBS -l nodes=${nodes}:ppn=$tasks_per_node
	724	#PBS -l pmem=${memory}mb
	725	#PBS -m abe
	726	#PBS -o $remote_dayfile
	727	#PBS -j oe
	728	mpd &
	729
	730	%%END%%
	731
[168]	732	else
	733	cat > $job_to_send << %%END%%
	734	#!/bin/ksh
	735	#PBS -N $job_name
[552]	736	#PBS -A $project_account
[168]	737	#PBS -l walltime=$timestring
	738	#PBS -l ncpus=1
	739	#PBS -l pmem=${memory}mb
	740	#PBS -m abe
	741	#PBS -o $remote_dayfile
	742	#PBS -j oe
	743
	744	%%END%%
	745
	746	fi
	747
[368]	748	elif [[ $remote_host = lck ]]
	749	then
	750
	751	if [[ $numprocs != 0 ]]
	752	then
	753	cat > $job_to_send << %%END%%
	754	#!/bin/ksh
	755	#PBS -N $job_name
	756	#PBS -l walltime=$timestring
	757	#PBS -l ncpus=$numprocs
	758	#PBS -l pmem=${memory}mb
	759	#PBS -o $remote_dayfile
	760	#PBS -j oe
	761
	762	mpd &
	763
	764	%%END%%
	765
	766	else
	767	cat > $job_to_send << %%END%%
	768	#!/bin/ksh
	769	#PBS -N $job_name
	770	#PBS -l walltime=$timestring
	771	#PBS -l ncpus=1
	772	#PBS -l pmem=${memory}mb
	773	#PBS -o $remote_dayfile
	774	#PBS -j oe
	775
	776	%%END%%
	777
	778	fi
	779
[181]	780	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
[179]	781	then
	782
[376]	783	if [[ "$sgi_feature" != "" ]]
	784	then
	785	feature_directive="#PBS -l feature=$sgi_feature"
	786	else
	787	feature_directive=""
	788	fi
[399]	789
[416]	790	if [[ $queue = dataq \|\| $queue = permq ]]
[399]	791	then
	792	feature_directive="#PBS -l feature=data"
	793	fi
[376]	794
[416]	795	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
[191]	796	then
	797	queue_directive="#PBS -q $queue"
	798	else
	799	queue_directive=""
	800	fi
	801
[352]	802	if [[ $email_notification = none ]]
	803	then
	804	email_directive=""
	805	else
	806	email_directive="#PBS -M $email_notification"
	807	fi
	808
[179]	809	if [[ $numprocs != 0 ]]
	810	then
	811	cat > $job_to_send << %%END%%
[181]	812	#!/bin/bash
[179]	813	#PBS -N $job_name
	814	#PBS -l walltime=$timestring
[181]	815	#PBS -l nodes=$nodes:ppn=${tasks_per_node}
	816	#PBS -l naccesspolicy=$node_usage
[179]	817	#PBS -o $remote_dayfile
	818	#PBS -j oe
[376]	819	$feature_directive
[191]	820	$queue_directive
[352]	821	$email_directive
[179]	822
	823	. /usr/share/modules/init/bash
[493]	824	$module_calls
[374]	825
[181]	826	echo ld_library_path=\$LD_LIBRARY_PATH
[179]	827
	828	%%END%%
	829
	830	else
	831	cat > $job_to_send << %%END%%
	832	#PBS -S /bin/bash
	833	#PBS -N $job_name
	834	#PBS -l walltime=$timestring
	835	#PBS -l ncpus=1
	836	#PBS -o $remote_dayfile
[475]	837	#PBS -j oe
[400]	838	$queue_directive
	839	$email_directive
[179]	840
[475]	841	. /usr/share/modules/init/bash
[493]	842	$module_calls
[475]	843
[179]	844	%%END%%
	845
	846	fi
	847
[164]	848	elif [[ $remote_host = lcxt4 ]]
	849	then
	850
	851	if [[ $numprocs != 0 ]]
	852	then
	853	cat > $job_to_send << %%END%%
	854	#!/bin/ksh
	855	#PBS -S /bin/ksh
	856	#PBS -N $job_name
[552]	857	#PBS -A $project_account
[206]	858	#PBS -j oe
[164]	859	#PBS -l walltime=$timestring
	860	#PBS -l mppwidth=${numprocs}
	861	#PBS -l mppnppn=${tasks_per_node}
	862	#PBS -m abe
	863	#PBS -o $remote_dayfile
[492]	864	$email_directive
[164]	865
[343]	866	. /opt/modules/default/init/ksh
[493]	867	$module_calls
[343]	868
[164]	869	%%END%%
	870
[108]	871	else
	872	cat > $job_to_send << %%END%%
	873	#!/bin/ksh
[168]	874	#PBS -S /bin/ksh
[108]	875	#PBS -N $job_name
[552]	876	#PBS -A $project_account
[206]	877	#PBS -j oe
[108]	878	#PBS -l walltime=$timestring
	879	#PBS -l ncpus=1
	880	#PBS -l pmem=${memory}mb
	881	#PBS -m abe
[492]	882	$email_directive
[108]	883	#PBS -o $remote_dayfile
	884
[343]	885	. /opt/modules/default/init/ksh
[493]	886	$module_calls
[343]	887
[108]	888	%%END%%
	889
	890	fi
	891
[440]	892	elif [[ $remote_host = lckyoto ]]
[437]	893	then
	894
[440]	895	cat > $job_to_send << %%END%%
	896	#!/bin/ksh
	897	# @\$-o $remote_dayfile
	898	# @\$-eo -oi
	899	# @\$-lP 16
	900	# @\$-lp 1
	901	# @\$-lm 28gb -llm unlimited -ls unlimited
	902	# @\$-q $queue
	903	# @\$-Pvn abs_pack
	904	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	905	#. /thin/local/etc/setprofile/intel-11.0.sh
	906	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	907	. ~/.myprofile
	908	#. /home2/t/t51254/palm/current_version/myprofile
	909	#. /thin/apps/pgi/mpi.sh
	910	#
	911	env
	912	#
	913	set -x
	914
	915	%%END%%
	916
	917	elif [[ $remote_host = lcxt5m ]]
	918	then
	919
[437]	920	if [[ $numprocs != 0 ]]
	921	then
	922	cat > $job_to_send << %%END%%
	923	#!/bin/ksh
	924	#PBS -S /bin/ksh
	925	#PBS -N $job_name
	926	#PBS -j oe
	927	#PBS -l walltime=$timestring
	928	#PBS -l mppwidth=${numprocs}
	929	#PBS -l mppnppn=${tasks_per_node}
	930	#PBS -m abe
	931	#PBS -o $remote_dayfile
	932
	933	. /opt/modules/default/init/ksh
[493]	934	$module_calls
[437]	935
	936	%%END%%
	937
	938	else
	939	cat > $job_to_send << %%END%%
	940	#!/bin/ksh
	941	#PBS -S /bin/ksh
	942	#PBS -N $job_name
	943	#PBS -j oe
	944	#PBS -l walltime=$timestring
	945	#PBS -l ncpus=1
	946	#PBS -l pmem=${memory}mb
	947	#PBS -m abe
	948	#PBS -o $remote_dayfile
	949
	950	. /opt/modules/default/init/ksh
[493]	951	$module_calls
[437]	952
	953	%%END%%
	954
	955	fi
	956
[1]	957	elif [[ $remote_host = nech ]]
	958	then
	959
	960	if (( nodes > 1 ))
	961	then
	962	cat > $job_to_send << %%END%%
	963	#!/bin/ksh
	964	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	965	#PBS -l ${qsubmem}=${Memory}gb
	966	#PBS -b $nodes
	967	#PBS -o $remote_dayfile
	968	#PBS -N palm
	969	#PBS -j o
	970	#PBS -T mpisx
	971
	972	%%END%%
	973
	974	elif [[ $numprocs != 0 ]]
	975	then
	976	cat > $job_to_send << %%END%%
	977	#!/bin/ksh
	978	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	979	#PBS -l ${qsubmem}=${Memory}gb
	980	#PBS -o $remote_dayfile
	981	#PBS -N palm
	982	#PBS -j o
	983
	984	%%END%%
	985
	986	else
	987	cat > $job_to_send << %%END%%
	988	#!/bin/ksh
	989	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	990	#PBS -o $remote_dayfile
	991	#PBS -j o
	992
	993	%%END%%
	994
	995	fi
	996
[251]	997	elif [[ $remote_host = necriam ]]
[35]	998	then
	999
	1000	if (( nodes > 1 ))
	1001	then
	1002	cat > $job_to_send << %%END%%
	1003	#!/bin/ksh
	1004	#PBS -b $nodes
	1005	#PBS -o $remote_dayfile
[253]	1006	#PBS -N $job_name
[35]	1007	#PBS -j o
[251]	1008	#PBS -v MPIPROGINV=YES
[35]	1009
	1010	%%END%%
	1011
	1012	elif [[ $numprocs != 0 ]]
	1013	then
	1014	cat > $job_to_send << %%END%%
	1015	#!/bin/ksh
	1016	#PBS -q ${queue}
	1017	#PBS -o $remote_dayfile
[253]	1018	#PBS -N $job_name
[35]	1019	#PBS -j o
[251]	1020	#PBS -v MPIPROGINV=YES
[35]	1021
	1022	%%END%%
	1023
	1024	else
	1025	cat > $job_to_send << %%END%%
	1026	#!/bin/ksh
	1027	#PBS -o $remote_dayfile
	1028	#PBS -j o
	1029
	1030	%%END%%
	1031
	1032	fi
	1033
[1]	1034	elif [[ $remote_host = lctit ]]
	1035	then
	1036	cat > $job_to_send << %%END%%
	1037	#!/bin/bash
	1038	#$ -S /bin/bash
	1039	cd $job_catalog
[69]	1040	export PATH=$PALM_BIN:\$PATH
	1041	echo \$PATH
[1]	1042
	1043	%%END%%
	1044
	1045	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
[118]	1046	# submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
[122]	1047	submcom="$submcom -g $group_number -N $job_name -rt 4320 -sgeout $remote_dayfile -q $node_usage "
[1]	1048
	1049	else
	1050
	1051	cat > $job_to_send << %%END%%
	1052	# @\$-q ${queue}
	1053	# @\$-l${qsubtime} $timestring
	1054	# @\$-l${qsubmem} ${memory}mb
	1055	# @\$-o $remote_dayfile
	1056	# @\$-eo
	1057
	1058	%%END%%
	1059
	1060	fi
	1061
	1062
	1063	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	1064	# BEI EXIT VERANLASSEN
	1065	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	1066	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	1067	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1068	then
	1069	echo "set +vx" >> $job_to_send
	1070	echo "trap '" >> $job_to_send
	1071	echo "set +vx" >> $job_to_send
[181]	1072	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
[1]	1073	then
	1074	if [[ $remote_host = ibmb \|\| $remote_host = ibmh ]]
	1075	then
	1076	return_queue=c1
	1077	elif [[ $remote_host = ibms ]]
	1078	then
	1079	return_queue=p_normal
	1080	elif [[ $remote_host = ibmy ]]
	1081	then
	1082	return_queue=serial
[325]	1083	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
	1084	then
[326]	1085	return_queue=serialq
[1]	1086	elif [[ $remote_host = lctit ]]
	1087	then
[118]	1088	return_queue=sla3
[251]	1089	elif [[ $remote_host = necriam ]]
[1]	1090	then
[253]	1091	return_queue=SP
[1]	1092	else
	1093	return_queue=unknown
	1094	fi
	1095
	1096	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1097	then
	1098
	1099	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1100	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	1101	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	1102	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	1103	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	1104	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	1105	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
[312]	1106	if [[ $host != "ibmh" ]]
	1107	then
	1108	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	1109	fi
[1]	1110	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	1111	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	1112
	1113	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	1114	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	1115
	1116	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
	1117	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
	1118	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	1119
	1120	elif [[ $remote_host = nech ]]
	1121	then
	1122	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1123	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1124	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1125	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1126	echo "#PBS -j o" >> $job_to_send
	1127	echo " " >> $job_to_send
	1128	echo "set -x" >> $job_to_send
	1129	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1130	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1131	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1132	echo "%%END%%" >> $job_to_send
	1133
[251]	1134	elif [[ $remote_host = necriam ]]
[35]	1135	then
	1136	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1137	echo "#PBS -q $return_queue" >> $job_to_send
	1138	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1139	echo "#PBS -j o" >> $job_to_send
	1140	echo " " >> $job_to_send
	1141	echo "set -x" >> $job_to_send
	1142	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1143	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1144	echo "%%END%%" >> $job_to_send
	1145
[181]	1146	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1147	then
	1148	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1149	echo "#!/bin/bash" >> $job_to_send
	1150	echo "#PBS -N job_protocol_transfer" >> $job_to_send
[325]	1151	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[181]	1152	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[366]	1153	echo "#PBS -l feature=data" >> $job_to_send
[181]	1154	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1155	echo "#PBS -j oe" >> $job_to_send
	1156	echo " " >> $job_to_send
	1157	echo ". /usr/share/modules/init/bash" >> $job_to_send
	1158	echo "set -x" >> $job_to_send
	1159	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1160	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1161	echo "%%END%%" >> $job_to_send
	1162
[1]	1163	elif [[ $remote_host = lctit ]]
	1164	then
	1165	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1166	echo "set -x" >> $job_to_send
	1167	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
	1168	echo "cd $job_catalog" >> $job_to_send
	1169	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1170	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1171	echo "%%END%%" >> $job_to_send
	1172
	1173	else
	1174
	1175	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1176	echo "# @\\\$-q $return_queue" >> $job_to_send
	1177	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1178	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1179	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1180	then
	1181	echo "# @\$-l mpp_p=0" >> $job_to_send
	1182	fi
	1183	echo '# @\$-lF 10mb' >> $job_to_send
	1184	# echo '# @\$-o /dev/null' >> $job_to_send
	1185	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1186	echo '# @\\\$-eo' >> $job_to_send
	1187	echo " " >> $job_to_send
	1188	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1189	then
	1190	echo "set +vx" >> $job_to_send
	1191	echo ". .profile" >> $job_to_send
	1192	fi
	1193	echo "set -x" >> $job_to_send
	1194	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
	1195	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1196	echo "%%END%%" >> $job_to_send
	1197	fi
	1198
	1199	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1200	then
	1201	echo "llsubmit scpjob.$kennung" >> $job_to_send
[181]	1202	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1203	then
	1204	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1205	echo "msub scpjob.$kennung" >> $job_to_send
[1]	1206	elif [[ $remote_host = lctit ]]
	1207	then
	1208	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1209	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
	1210	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
	1211	echo "sleep 10" >> $job_to_send
	1212	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1213	then
	1214	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	1215	elif [[ $remote_host = t3es ]]
	1216	then
	1217	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
	1218	else
	1219	echo "qsub scpjob.$kennung" >> $job_to_send
	1220	fi
	1221	echo "rm scpjob.$kennung" >> $job_to_send
	1222	if [[ $remote_host = nech ]]
	1223	then
	1224	echo "cd -" >> $job_to_send
	1225	fi
	1226	else
	1227	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1228	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	1229	fi
	1230	echo "set -x" >> $job_to_send
	1231	echo " ' exit" >> $job_to_send
	1232	echo "set -x" >> $job_to_send
	1233	fi
	1234
	1235
	1236
	1237	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	1238	cat $file_to_send >> $job_to_send
[69]	1239
[1]	1240	if [[ $remote_host = ibm ]]
	1241	then
	1242	echo " " >> $job_to_send
	1243	echo "exit" >> $job_to_send
	1244	fi
[69]	1245	if [[ $remote_host = lctit ]]
	1246	then
	1247	echo " " >> $job_to_send
	1248	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1249	fi
[1]	1250
	1251
	1252
	1253	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	1254	if [[ -z $remote_user ]]
	1255	then
	1256	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	1257	then
	1258	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	1259	fi
	1260	fi
	1261
	1262
	1263
	1264	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	1265	if [[ $no_submit = false ]]
	1266	then
	1267	if [[ $remote_host != $local_host ]]
	1268	then
	1269	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	1270	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	1271	then
[82]	1272	job_catalog_save=$job_catalog
	1273	job_catalog=job_queue
	1274	elif [[ $remote_host = nech ]]
	1275	then
	1276	job_catalog_save=$job_catalog
	1277	job_catalog=/hpf/b/${remote_user}/job_queue
	1278	fi
	1279	if [[ $local_host = decalpha ]]
	1280	then
	1281	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
	1282	# PASSWORT AB
	1283	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
	1284	elif [[ $remote_host = nech ]]
	1285	then
	1286	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	1287	# TRANSFERIERT WERDEN
	1288	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1289	else
[82]	1290	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	1291	fi
[82]	1292	if [[ $? = 1 ]]
	1293	then
	1294	locat=scp; exit
	1295	fi
	1296	if [[ $remote_host = ibms ]]
	1297	then
	1298	job_catalog=$job_catalog_save
	1299	fi
[1]	1300	[[ $verify = true ]] && printf "\n >>> finished\n"
	1301	else
	1302	eval job_catalog=$job_catalog
	1303	cp $job_to_send ${job_catalog}/$job_on_remhost
	1304	fi
	1305
	1306
	1307
	1308	# NQS- BZW. LOADLEVELER-JOB STARTEN
	1309	if [[ $remote_host != $local_host ]]
	1310	then
	1311	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[82]	1312	if [[ $remote_host != lctit ]]
[1]	1313	then
[372]	1314	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
	1315	then
	1316	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
	1317	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
	1318	else
	1319	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
	1320	fi
[1]	1321	else
[206]	1322	# TIT ERLAUBT NUR DIE AUSFï¿œHRUNG GANZ BESTIMMTER KOMMANDOS
[82]	1323	# MIT SSH, DESHALB AUFRUF PER PIPE
	1324	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
	1325	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	1326	echo "first try" > send_protocol
	1327	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
	1328	do
	1329	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
	1330	then
	1331	printf "\n trying to submit job to TIT cluster..."
	1332	else
	1333	printf "\n +++ failed ... trying to submit again ..."
	1334	fi
	1335	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
	1336	cat send_protocol
	1337	done
	1338	sleep 10
	1339	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	1340	echo "$submcom $job_on_remhost"
	1341	rm send_protocol
	1342	fi
[1]	1343
	1344	[[ $verify = true ]] && printf " >>> o.k.\n"
	1345	else
	1346	cd $job_catalog
[210]	1347	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
[1]	1348	then
	1349	eval $submcom $job_on_remhost
[367]	1350	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck ]]
[108]	1351	then
	1352	eval $submcom $job_on_remhost
	1353	echo "$submcom $job_on_remhost"
	1354	chmod u+x $job_on_remhost
[407]	1355
[1]	1356	elif [[ $local_host = nech ]]
	1357	then
	1358	if [[ $queue = default ]]
	1359	then
	1360	eval $submcom $job_on_remhost
	1361	else
	1362	eval $submcom -q $queue $job_on_remhost
	1363	fi
	1364	else
	1365	qsub $job_on_remhost
	1366	fi
[69]	1367	# JOBFILE DARF AUF LCTIT NICHT GELOESCHT WERDEN!! GESCHIEHT ERST AM JOBENDE
	1368	[[ $local_host != lctit ]] && rm $job_on_remhost
[1]	1369	cd - > /dev/null
	1370	fi
	1371	fi
	1372
	1373
	1374
	1375	# ABSCHLUSSARBEITEN
	1376
	1377	if [[ $no_submit = false ]]
	1378	then
	1379	rm $job_to_send
	1380	fi
	1381	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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source: palm/trunk/SCRIPTS/subjob @ 563

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