[1] | 1 | #!/bin/ksh |
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[1090] | 2 | |
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| 3 | # subjob - script for automatic generation and submission of batch-job files |
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| 4 | # for various batch queuing systems |
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| 5 | |
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[1046] | 6 | #--------------------------------------------------------------------------------# |
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| 7 | # This file is part of PALM. |
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| 8 | # |
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| 9 | # PALM is free software: you can redistribute it and/or modify it under the terms |
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| 10 | # of the GNU General Public License as published by the Free Software Foundation, |
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| 11 | # either version 3 of the License, or (at your option) any later version. |
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| 12 | # |
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| 13 | # PALM is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 14 | # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR |
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| 15 | # A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
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| 16 | # |
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| 17 | # You should have received a copy of the GNU General Public License along with |
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| 18 | # PALM. If not, see <http://www.gnu.org/licenses/>. |
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| 19 | # |
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| 20 | # Copyright 1997-2012 Leibniz University Hannover |
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| 21 | #--------------------------------------------------------------------------------# |
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| 22 | # |
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| 23 | # Current revisions: |
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[1090] | 24 | # ------------------ |
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[1099] | 25 | # adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka) |
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| 26 | # and for Forwind cluster (lcflow) |
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[1046] | 27 | # |
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| 28 | # Former revisions: |
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| 29 | # ----------------- |
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[169] | 30 | # $Id: subjob 1099 2013-02-10 01:47:43Z raasch $ |
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[1047] | 31 | # |
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[1096] | 32 | # 1094 2013-02-03 01:52:12Z raasch |
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| 33 | # new option -P for explicit setting of ssh/scp port, |
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| 34 | # decalpha parts (yonsei) removed |
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| 35 | # |
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[1091] | 36 | # 2013-02-02 07:06:13Z raasch |
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[1099] | 37 | # adjustments for Kyushu-University computing center (lckyut - tatara) |
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[1091] | 38 | # old changelog messages removed |
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| 39 | # |
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[1047] | 40 | # 1046 2012-11-09 14:38:45Z maronga |
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| 41 | # code put under GPL (PALM 3.9) |
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| 42 | # |
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[1090] | 43 | # 08/07/94 - Siggi - first version finished |
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| 44 | # 29/06/94 - Siggi - script development started |
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| 45 | #--------------------------------------------------------------------------------# |
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| 46 | # subjob - script for automatic generation and submission of batch-job files |
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| 47 | # for various batch queuing systems |
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| 48 | #--------------------------------------------------------------------------------# |
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[1] | 49 | |
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| 50 | |
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| 51 | # VARIABLENVEREINBARUNGEN + DEFAULTWERTE |
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[352] | 52 | delete_dayfile=false |
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[799] | 53 | email_notification=none |
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[122] | 54 | group_number=none |
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[1] | 55 | locat=normal |
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| 56 | no_default_queue=none |
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| 57 | no_submit=false |
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| 58 | job_catalog="~/job_queue" |
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| 59 | job_name=none |
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| 60 | local_user=$LOGNAME |
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| 61 | node_usage=shared |
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[475] | 62 | numprocs=0 |
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[1] | 63 | punkte="..........................................................." |
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| 64 | submcom=qsub |
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| 65 | queue=default |
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| 66 | remote_host=none |
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| 67 | remote_user="" |
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| 68 | verify=true |
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| 69 | |
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| 70 | typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden |
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[696] | 71 | typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1 |
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[1] | 72 | typeset -L20 spalte1 |
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| 73 | typeset -R40 spalte2 |
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| 74 | typeset -L60 spalte3 |
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| 75 | |
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| 76 | |
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| 77 | |
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| 78 | # FEHLERBEHANDLUNG |
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| 79 | # BEI EXIT: |
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| 80 | trap 'if [[ $locat != normal ]] |
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| 81 | then |
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| 82 | case $locat in |
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| 83 | (option) printf "\n --> available optios can be displayed" |
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| 84 | printf " by typing:" |
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| 85 | printf "\n \"subjob ?\" \n";; |
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| 86 | (ftpcopy|parameter|scp|verify) printf "\n";; |
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| 87 | (*) printf "\n +++ unknown error" |
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| 88 | printf "\n please inform S. Raasch!\n" |
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| 89 | esac |
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| 90 | [[ -f $job_to_send ]] && rm $job_to_send |
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| 91 | printf "\n\n+++ SUBJOB killed \n\n" |
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| 92 | fi' exit |
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| 93 | |
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| 94 | |
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| 95 | # BEI TERMINAL-BREAK: |
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| 96 | trap '[[ -f $job_to_send ]] && rm $job_to_send |
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| 97 | printf "\n\n+++ SUBJOB killed \n\n" |
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| 98 | exit |
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| 99 | ' 2 |
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| 100 | |
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| 101 | |
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| 102 | |
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| 103 | |
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| 104 | # LOKALEN HOSTNAMEN FESTSTELLEN |
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| 105 | local_host=$(hostname) |
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| 106 | |
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| 107 | |
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| 108 | |
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| 109 | # HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST |
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| 110 | # UEBERHAUPT ZULAESSIG IST |
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[717] | 111 | # Note: One of the entries for "lck" or "lckordi" always has to be |
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| 112 | # comment out, because the hostname (node*) is same for both machines |
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[1] | 113 | case $local_host in |
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| 114 | (atmos) local_addres=172.20.25.35; local_host=lcide;; |
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[102] | 115 | (autan) local_addres=130.75.105.57; local_host=lcmuk;; |
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[5] | 116 | (bora) local_addres=130.75.105.103; local_host=lcmuk;; |
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[400] | 117 | (bd1) local_addres=130.73.232.64; local_host=lcsgib;; |
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| 118 | (bd2) local_addres=130.73.232.65; local_host=lcsgib;; |
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| 119 | (bd3) local_addres=130.73.232.66; local_host=lcsgib;; |
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| 120 | (bd4) local_addres=130.73.232.67; local_host=lcsgib;; |
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| 121 | (b01*|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;; |
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[291] | 122 | (bicegate2) local_addres=130.73.232.103; local_host=lcsgib;; |
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[749] | 123 | (blizzard1) local_addres=136.172.40.15; local_host=ibmh;; |
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[12] | 124 | (breva) local_addres=130.75.105.98; local_host=lcmuk;; |
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[372] | 125 | (caurus) local_addres=130.75.105.19; local_host=lcmuk;; |
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[693] | 126 | (climate*) local_addres=165.132.26.68; local_host=lcyon;; |
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[108] | 127 | (compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;; |
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[1] | 128 | (cs*) local_addres=136.172.44.131; local_host=nech;; |
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[5] | 129 | (elephanta) local_addres=130.75.105.6; local_host=lcmuk;; |
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[108] | 130 | (fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;; |
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[1099] | 131 | (flow01) local_addres=10.141.255.71; local_host=lcflow;; |
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| 132 | (flow02) local_addres=10.141.255.72; local_host=lcflow;; |
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[367] | 133 | (node*) local_addres=165.132.26.61 local_host=lck;; |
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[717] | 134 | # (node*) local_addres=210.219.61.8 local_host=lckordi;; |
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[693] | 135 | (gaia*) local_addres=150.183.146.24; local_host=ibmkisti;; |
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[101] | 136 | (gallego) local_addres=130.75.105.10; local_host=lcmuk;; |
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[1] | 137 | (gfdl5) local_addres=165.132.26.58; local_host=ibmy;; |
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[5] | 138 | (gregale) local_addres=130.75.105.109; local_host=lcmuk;; |
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| 139 | (hababai) local_addres=130.75.105.108; local_host=lcmuk;; |
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[1099] | 140 | (hayaka*) local_addres=133.5.4.33; local_host=lckyuh;; |
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[892] | 141 | (hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;; |
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[400] | 142 | (hd1) local_addres=130.75.4.104; local_host=lcsgih;; |
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| 143 | (hd2) local_addres=130.75.4.105; local_host=lcsgih;; |
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| 144 | (hd3) local_addres=130.75.4.106; local_host=lcsgih;; |
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| 145 | (hd4) local_addres=130.75.4.107; local_host=lcsgih;; |
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[739] | 146 | (hicegate0) local_addres=130.75.4.101; local_host=lcsgih;; |
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[292] | 147 | (h01*|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;; |
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[210] | 148 | (hicegate2) local_addres=130.75.4.103; local_host=lcsgih;; |
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[440] | 149 | (hx*) local_addres=133.3.51.11; local_host=lckyoto;; |
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[749] | 150 | (inferno) local_addres=130.75.105.5; local_host=lcmuk;; |
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[5] | 151 | (irifi) local_addres=130.75.105.104; local_host=lcmuk;; |
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[407] | 152 | (sno) local_addres=130.75.105.113; local_host=lcmuk;; |
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[5] | 153 | (levanto) local_addres=130.75.105.45; local_host=lcmuk;; |
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[1040] | 154 | (login*) local_addres=118.128.66.223; local_host=lckiaps;; |
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[5] | 155 | (maestro) local_addres=130.75.105.2; local_host=lcmuk;; |
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[1099] | 156 | (meller) local_addres=134.106.74.155; local_host=lcfor;; |
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[437] | 157 | (meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;; |
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[892] | 158 | (hexagon*) local_addres=129.177.20.113; local_host=lcxe6;; |
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[1] | 159 | (nobel*) local_addres=150.183.5.101; local_host=ibms;; |
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[5] | 160 | (orkan) local_addres=130.75.105.3; local_host=lcmuk;; |
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| 161 | (ostria) local_addres=130.75.105.106; local_host=lcmuk;; |
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[205] | 162 | (paesano) local_addres=130.75.105.46; local_host=lcmuk;; |
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[1099] | 163 | (pcj*) local_addres=172.31.120.1; local_host=lckyut;; |
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[789] | 164 | (pingui) local_addres=134.106.74.118; local_host=lcfor;; |
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[5] | 165 | (quanero) local_addres=130.75.105.107; local_host=lcmuk;; |
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[622] | 166 | (rte*) local_addres=133.5.185.60; local_host=lcrte;; |
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[1] | 167 | (scirocco) local_addres=172.20.25.41; local_host=lcmuk;; |
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[799] | 168 | (solano) local_addres=130.75.105.110; local_host=lcmuk;; |
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[1090] | 169 | (sugoka*) local_addres=172.31.120.1; local_host=lckyut;; |
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[1] | 170 | (sun1|sun2) local_addres=130.75.6.1; local_host=unics;; |
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[259] | 171 | (sx-*) local_addres=172.16.1.131; local_host=necriam;; |
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[181] | 172 | (r1*) local_addres=130.75.4.102; local_host=lcsgih;; |
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[196] | 173 | (r2*) local_addres=130.73.232.102; local_host=lcsgib;; |
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[635] | 174 | (t2a*) local_addres=10.1.6.165; local_host=lctit;; |
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[1021] | 175 | (urban*) local_addres=147.46.30.151 local_host=lcsb;; |
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[1] | 176 | (vorias) local_addres=172.20.25.43; local_host=lcmuk;; |
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[622] | 177 | (*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;; |
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[1] | 178 | (*) printf "\n +++ \"$local_host\" unknown"; |
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| 179 | printf "\n please inform S. Raasch!"; |
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| 180 | locat=parameter; exit;; |
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| 181 | esac |
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| 182 | |
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| 183 | |
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| 184 | |
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| 185 | # REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN |
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| 186 | remote_host=$local_host |
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| 187 | |
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| 188 | |
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| 189 | |
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| 190 | |
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| 191 | # PROZEDUROPTIONEN EINLESEN |
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[1094] | 192 | while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option |
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[1] | 193 | do |
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| 194 | case $option in |
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| 195 | (c) job_catalog=$OPTARG;; |
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| 196 | (d) delete_dayfile=true;; |
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| 197 | (D) no_submit=true;; |
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[352] | 198 | (e) email_notification=$OPTARG;; |
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[125] | 199 | (g) group_number=$OPTARG;; |
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[1] | 200 | (h) remote_host=$OPTARG;; |
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| 201 | (m) memory=$OPTARG;; |
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| 202 | (n) job_name=$OPTARG;; |
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| 203 | (N) node_usage=$OPTARG;; |
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| 204 | (O) threads_per_task=$OPTARG;; |
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[1094] | 205 | (P) scp_port=$OPTARG;; |
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[1] | 206 | (q) no_default_queue=$OPTARG;; |
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| 207 | (t) cputime=$OPTARG;; |
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| 208 | (T) tasks_per_node=$OPTARG;; |
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| 209 | (u) remote_user=$OPTARG;; |
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| 210 | (v) verify=false;; |
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| 211 | (X) numprocs=$OPTARG;; |
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| 212 | (\?) printf "\n +++ Option $OPTARG unknown \n"; |
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| 213 | locat=option; exit;; |
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| 214 | esac |
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| 215 | done |
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| 216 | |
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| 217 | |
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| 218 | # JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN |
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| 219 | shift OPTIND-1; file_to_send=$1 |
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| 220 | |
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| 221 | |
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| 222 | # KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN |
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| 223 | if [ "$1" = "?" ] |
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| 224 | then |
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| 225 | (printf "\n *** subjob can be called as follows:\n" |
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| 226 | printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n" |
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| 227 | printf "\n Description of available options:\n" |
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| 228 | printf "\n Option Description Default-Value" |
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| 229 | printf "\n -c job-input- and output-catalog ~/job_queue" |
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| 230 | printf "\n -d no job-protocol will be created ---" |
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| 231 | printf "\n -D only the job-file will be created ---" |
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| 232 | printf "\n -h execution host, available hosts: $remote_host" |
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[693] | 233 | printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...," |
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[1040] | 234 | printf "\n lckiaps, lctit, nech, necriam, unics" |
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[1] | 235 | printf "\n -m memory demand per process in MByte ---" |
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| 236 | printf "\n -n jobname <jobdatei>" |
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| 237 | printf "\n -O threads per task (for OpenMP usage) 1" |
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[1094] | 238 | printf "\n -P ssh/scp port default port" |
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[1] | 239 | printf "\n -q job-queue to be used default" |
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| 240 | printf "\n -t allowed cpu-time in seconds ---" |
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| 241 | printf "\n -T tasks per node (on parallel hosts) ---" |
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| 242 | printf "\n -u username on execution host from .netrc" |
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| 243 | printf "\n -v no prompt for confirmation ---" |
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| 244 | printf "\n -X # of processors (on parallel hosts) 1" |
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| 245 | printf "\n " |
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| 246 | printf "\n The only possible positional parameter is <jobfile>:" |
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| 247 | printf "\n The complete NQS-job must be provided here." |
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| 248 | printf "\n <jobfile>=? creates this outline\n\n") | more |
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| 249 | exit |
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| 250 | fi |
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| 251 | |
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| 252 | |
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| 253 | |
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| 254 | # PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT |
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| 255 | if [[ "$file_to_send" = "" ]] |
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| 256 | then |
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| 257 | printf "\n +++ job-file missing" |
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| 258 | locat=parameter; exit |
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| 259 | else |
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| 260 | if [[ -f $file_to_send ]] |
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| 261 | then |
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| 262 | true |
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| 263 | else |
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| 264 | printf "\n +++ job-file: " |
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| 265 | printf "\n $file_to_send" |
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| 266 | printf "\n does not exist" |
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| 267 | locat=parameter; exit |
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| 268 | fi |
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| 269 | fi |
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| 270 | |
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| 271 | |
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| 272 | |
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| 273 | # FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME |
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| 274 | # GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE |
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| 275 | if [[ $job_name = none ]] |
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| 276 | then |
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| 277 | job_name=$file_to_send |
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| 278 | fi |
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| 279 | if [[ $(echo $job_name | grep -c "/") != 0 ]] |
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| 280 | then |
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| 281 | printf "\n +++ job-file name: " |
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| 282 | printf "\n $job_name" |
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| 283 | printf "\n must not contain \"/\"-characters" |
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| 284 | locat=parameter; exit |
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| 285 | fi |
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| 286 | |
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| 287 | |
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| 288 | |
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| 289 | |
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| 290 | # HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST |
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| 291 | # ODER WENN HOST NICHT ANGEGEBEN WURDE |
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| 292 | if [[ $remote_host = none ]] |
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| 293 | then |
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| 294 | printf "\n +++ host missing" |
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| 295 | locat=option; exit |
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| 296 | else |
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| 297 | case $remote_host in |
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[251] | 298 | (ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
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[312] | 299 | (ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
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[693] | 300 | (ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
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[622] | 301 | (ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;; |
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[251] | 302 | (ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
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| 303 | (ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;; |
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| 304 | (lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;; |
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[1099] | 305 | (lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;; |
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[440] | 306 | (lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;; |
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[540] | 307 | (lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;; |
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| 308 | (lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;; |
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[367] | 309 | (lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;; |
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[1040] | 310 | (lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;; |
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[717] | 311 | (lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;; |
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[1099] | 312 | (lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;; |
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[1090] | 313 | (lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;; |
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[1021] | 314 | (lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;; |
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[635] | 315 | (lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;; |
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[892] | 316 | (lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;; |
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[437] | 317 | (lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;; |
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[693] | 318 | (lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;; |
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[251] | 319 | (nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";; |
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| 320 | (necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";; |
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| 321 | (vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;; |
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| 322 | (unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;; |
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| 323 | (*) printf "\n +++ hostname \"$remote_host\" not allowed"; |
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| 324 | locat=parameter; exit;; |
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[1] | 325 | esac |
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| 326 | fi |
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| 327 | |
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| 328 | |
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| 329 | # EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST |
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| 330 | if [[ $no_default_queue != none ]] |
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| 331 | then |
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| 332 | error=false |
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| 333 | ndq=$no_default_queue |
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| 334 | case $remote_host in |
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| 335 | (ibm) case $ndq in |
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| 336 | (p690_express|p690_standard|p690_long) error=false;; |
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| 337 | (*) error=true;; |
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| 338 | esac;; |
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| 339 | (ibmh) case $ndq in |
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[312] | 340 | (no_class) error=false;; |
---|
[1] | 341 | (*) error=true;; |
---|
| 342 | esac;; |
---|
[693] | 343 | (ibmkisti) case $ndq in |
---|
| 344 | (class.32plus|class.1-2|class.2-32) error=false;; |
---|
| 345 | (*) error=true;; |
---|
| 346 | esac;; |
---|
[622] | 347 | (ibmku) case $ndq in |
---|
| 348 | (sdbg1|sdbg2|sdbg4|s4|s16|s32|s32-s) error=false;; |
---|
| 349 | (*) error=true;; |
---|
| 350 | esac;; |
---|
[1] | 351 | (ibms) case $ndq in |
---|
| 352 | (express|normal|p_express|p_normal|p_normal_1.3|p_normal_1.7|grand) error=false;; |
---|
| 353 | (*) error=true;; |
---|
| 354 | esac;; |
---|
| 355 | (ibmy) case $ndq in |
---|
| 356 | (parallel) error=false;; |
---|
| 357 | (*) error=true;; |
---|
| 358 | esac;; |
---|
[1099] | 359 | (lcflow) case $ndq in |
---|
| 360 | (cfd_lom_long.q|cfd_him_long.q|cfd_lom_serl.q|cfd_lom_shrt.q|cfd_him_shrt.q) error=false;; |
---|
| 361 | (*) error=true;; |
---|
| 362 | esac;; |
---|
[1040] | 363 | (lckiaps) case $ndq in |
---|
| 364 | (express|normal) error=false;; |
---|
| 365 | (*) error=true;; |
---|
| 366 | esac;; |
---|
[440] | 367 | (lckyoto) case $ndq in |
---|
| 368 | (eh|ph) error=false;; |
---|
| 369 | (*) error=true;; |
---|
| 370 | esac;; |
---|
[1099] | 371 | (lckyuh) case $ndq in |
---|
| 372 | (fx-dbg|fx-single|fx-small|fx-middle|fx-large) error=false;; |
---|
| 373 | (*) error=true;; |
---|
| 374 | esac;; |
---|
[1090] | 375 | (lckyut) case $ndq in |
---|
| 376 | (cx-dbg|cx-single|cx-small|cx-middle|cx-large) error=false;; |
---|
| 377 | (*) error=true;; |
---|
| 378 | esac;; |
---|
[191] | 379 | (lcsgib|lcsgih) case $ndq in |
---|
[416] | 380 | (testq|serialq|smallq|mediumq|bigq|workq|dataq|permq|special1q) error=false;; |
---|
[191] | 381 | (*) error=true;; |
---|
| 382 | esac;; |
---|
[1] | 383 | (lctit) case $ndq in |
---|
[635] | 384 | (G|L128|L256|L512H|S|S96|V) error=false;; |
---|
[1] | 385 | (*) error=true;; |
---|
| 386 | esac;; |
---|
| 387 | (t3eb) case $ndq in |
---|
| 388 | (berte|p50|p100|p392|forfree|p25himem) error=false;; |
---|
| 389 | (*) error=true;; |
---|
| 390 | esac;; |
---|
[251] | 391 | (necriam) case $ndq in |
---|
[253] | 392 | (SP|SS|P6) error=false;; |
---|
[251] | 393 | (*) error=true;; |
---|
| 394 | esac;; |
---|
[1] | 395 | (t3eh) case $ndq in |
---|
| 396 | (para_t3e|em|k|l|lm|comp_t3e|c|p|ht) error=false;; |
---|
| 397 | (*) error=true;; |
---|
| 398 | esac;; |
---|
| 399 | (t3ej2|t3ej5) case $ndq in |
---|
| 400 | (low|normal|high) error=false;; |
---|
| 401 | (*) error=true;; |
---|
| 402 | esac;; |
---|
| 403 | (t3es) case $ndq in |
---|
| 404 | (batch|serial-4|pe4|p48|pe16|pe32|pe64|pe128) error=false;; |
---|
| 405 | (*) error=true;; |
---|
| 406 | esac;; |
---|
| 407 | (unics) case $ndq in |
---|
| 408 | (unics|ht) error=false;; |
---|
| 409 | (*) error=true;; |
---|
| 410 | esac;; |
---|
| 411 | esac |
---|
| 412 | if [[ $error = true ]] |
---|
| 413 | then |
---|
| 414 | printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed" |
---|
| 415 | locat=parameter; exit |
---|
| 416 | else |
---|
| 417 | queue=$no_default_queue |
---|
| 418 | fi |
---|
| 419 | fi |
---|
| 420 | |
---|
| 421 | |
---|
| 422 | |
---|
| 423 | # PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN |
---|
| 424 | # AUFTEILEN |
---|
| 425 | done=false |
---|
| 426 | while [[ $done = false ]] |
---|
| 427 | do |
---|
| 428 | if (( $cputime <= 0 )) |
---|
| 429 | then |
---|
| 430 | printf "\n +++ wrong cpu-time or cpu-time missing" |
---|
| 431 | printf "\n >>> Please type cpu-time in seconds as INTEGER:" |
---|
| 432 | printf "\n >>> " |
---|
| 433 | read cputime 1>/dev/null 2>&1 |
---|
| 434 | else |
---|
| 435 | done=true |
---|
| 436 | fi |
---|
| 437 | done |
---|
| 438 | if [[ $remote_host = nech ]] |
---|
| 439 | then |
---|
| 440 | if (( tasks_per_node != 0 )) |
---|
| 441 | then |
---|
| 442 | (( cputime = cputime * tasks_per_node )) |
---|
| 443 | elif [[ $numprocs != 0 ]] |
---|
| 444 | then |
---|
| 445 | (( cputime = cputime * numprocs )) |
---|
| 446 | fi |
---|
| 447 | fi |
---|
| 448 | (( stunden = cputime / 3600 )) |
---|
| 449 | (( resttime = cputime - stunden * 3600 )) |
---|
| 450 | (( minuten = resttime / 60 )) |
---|
| 451 | (( sekunden = resttime - minuten * 60 )) |
---|
| 452 | timestring=${stunden}:${minuten}:${sekunden} |
---|
| 453 | |
---|
| 454 | |
---|
| 455 | |
---|
| 456 | # PRUEFEN DER KERNSPEICHERANFORDERUNG |
---|
| 457 | done=false |
---|
| 458 | while [[ $done = false ]] |
---|
| 459 | do |
---|
| 460 | if (( memory <= 0 )) |
---|
| 461 | then |
---|
| 462 | printf "\n +++ wrong memory demand or memory demand missing" |
---|
| 463 | printf "\n >>> Please type memory in MByte per process as INTEGER:" |
---|
| 464 | printf "\n >>> " |
---|
| 465 | read memory 1>/dev/null 2>&1 |
---|
| 466 | else |
---|
| 467 | done=true |
---|
| 468 | fi |
---|
| 469 | done |
---|
| 470 | |
---|
[251] | 471 | if [[ $remote_host = nech || $remote_host = necriam ]] |
---|
[1] | 472 | then |
---|
| 473 | if (( tasks_per_node != 0 )) |
---|
| 474 | then |
---|
| 475 | (( Memory = memory * tasks_per_node / 1000 )) |
---|
| 476 | elif [[ $numprocs != 0 ]] |
---|
| 477 | then |
---|
| 478 | (( Memory = memory * numprocs / 1000 )) |
---|
| 479 | else |
---|
| 480 | (( Memory = memory / 1000 )) |
---|
| 481 | fi |
---|
[635] | 482 | elif [[ $remote_host = lctit ]] |
---|
| 483 | then |
---|
| 484 | (( Memory = memory * tasks_per_node / 1000 )) |
---|
[1] | 485 | fi |
---|
| 486 | |
---|
| 487 | |
---|
| 488 | # SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG |
---|
| 489 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
| 490 | then |
---|
| 491 | (( memory = memory * threads_per_task )) |
---|
| 492 | fi |
---|
| 493 | |
---|
| 494 | |
---|
| 495 | # BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN |
---|
| 496 | if (( tasks_per_node != 0 )) |
---|
| 497 | then |
---|
[622] | 498 | (( nodes = numprocs / ( tasks_per_node * threads_per_task ) )) |
---|
[1] | 499 | fi |
---|
| 500 | |
---|
[1094] | 501 | |
---|
[622] | 502 | # Calculate number of processes per node |
---|
| 503 | (( processes_per_node = tasks_per_node * threads_per_task )) |
---|
[1] | 504 | |
---|
[1094] | 505 | |
---|
[696] | 506 | # Calculate number of MPI tasks |
---|
| 507 | (( mpi_tasks = numprocs / threads_per_task )) |
---|
[1] | 508 | |
---|
[696] | 509 | |
---|
[1094] | 510 | # Set port number option for calls of ssh/scp, subjob and batch_scp scripts |
---|
| 511 | if [[ "$scp_port" != "" ]] |
---|
| 512 | then |
---|
| 513 | PORTOPT="-P $scp_port" |
---|
| 514 | SSH_PORTOPT="-p $scp_port" |
---|
| 515 | fi |
---|
| 516 | |
---|
| 517 | |
---|
[1] | 518 | # HEADER-AUSGABE |
---|
| 519 | if [[ $verify = true ]] |
---|
| 520 | then |
---|
| 521 | printf "\n\n" |
---|
| 522 | printf "#--------------------------------------------------------------# \n" |
---|
| 523 | spalte1=SUBJOB;spalte2=$(date) |
---|
| 524 | printf "| $spalte1$spalte2 | \n" |
---|
| 525 | printf "| | \n" |
---|
| 526 | printf "| values of parameters/options: | \n" |
---|
| 527 | spalte1=local_host$punkte; spalte2=$punkte$local_host |
---|
| 528 | printf "| $spalte1$spalte2 | \n" |
---|
| 529 | spalte1=remote_host$punkte; spalte2=$punkte$remote_host |
---|
| 530 | printf "| $spalte1$spalte2 | \n" |
---|
| 531 | spalte1=queue$punkte; spalte2=$punkte$queue |
---|
| 532 | printf "| $spalte1$spalte2 | \n" |
---|
| 533 | spalte1=memory$punkte; spalte2="$punkte$memory mb" |
---|
| 534 | printf "| $spalte1$spalte2 | \n" |
---|
| 535 | spalte1=cputime$punkte; spalte2="$punkte$cputime sec" |
---|
| 536 | printf "| $spalte1$spalte2 | \n" |
---|
| 537 | spalte1=job_name$punkte; spalte2="$punkte$job_name" |
---|
| 538 | printf "| $spalte1$spalte2 | \n" |
---|
| 539 | printf "#--------------------------------------------------------------# \n\n" |
---|
| 540 | |
---|
| 541 | |
---|
| 542 | # KONTROLLABFRAGE, OB ALLES O.K. |
---|
| 543 | antwort="dummy" |
---|
| 544 | while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]] |
---|
| 545 | do |
---|
| 546 | read antwort?" >>> continue (y/n) ? " |
---|
| 547 | done |
---|
| 548 | if [[ $antwort = n || $antwort = N ]] |
---|
| 549 | then |
---|
| 550 | locat=verify; exit |
---|
| 551 | fi |
---|
| 552 | printf "\n" |
---|
| 553 | fi |
---|
| 554 | |
---|
| 555 | |
---|
| 556 | |
---|
| 557 | # ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN |
---|
| 558 | kennung=$RANDOM |
---|
| 559 | job_on_remhost=${job_name}_${kennung}_$local_host |
---|
| 560 | job_to_send=job_to_send_$kennung |
---|
| 561 | if [[ $delete_dayfile = false ]] |
---|
| 562 | then |
---|
| 563 | remote_dayfile=${local_host}_${job_name}_result_$kennung |
---|
| 564 | local_dayfile=${remote_host}_${job_name} |
---|
| 565 | else |
---|
| 566 | remote_dayfile=/dev/null |
---|
| 567 | fi |
---|
| 568 | |
---|
| 569 | |
---|
| 570 | |
---|
[622] | 571 | # Generate the batch job scripts (qsub/msub/LoadLeveler) |
---|
[1] | 572 | if [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs != 0 ]] |
---|
| 573 | then |
---|
| 574 | |
---|
[622] | 575 | # General LoadLeveler settings |
---|
| 576 | execute_in_shell="#!/bin/ksh" |
---|
| 577 | use_shell="# @ shell = /bin/ksh" |
---|
| 578 | consumable_memory="ConsumableMemory($memory mb)" |
---|
| 579 | class="# @ class = $queue" |
---|
| 580 | environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes" |
---|
| 581 | network_to_use="# @ network.mpi = sn_all,shared,us" |
---|
| 582 | data_limit="# @ data_limit = 1.76gb" |
---|
| 583 | image_size="# @ image_size = 50" |
---|
[693] | 584 | wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring" |
---|
[312] | 585 | |
---|
[693] | 586 | if [[ $email_notification = none ]] |
---|
| 587 | then |
---|
| 588 | notify_user="" |
---|
| 589 | else |
---|
| 590 | notify_user="# @ notify_user = $email_notification" |
---|
| 591 | if [[ $delete_dayfile = true ]] |
---|
| 592 | then |
---|
| 593 | notification='# @ notification = never' |
---|
| 594 | fi |
---|
| 595 | fi |
---|
[622] | 596 | |
---|
[312] | 597 | if [[ $remote_host = ibmh ]] |
---|
[1] | 598 | then |
---|
[312] | 599 | data_limit="" |
---|
| 600 | network_to_use="" |
---|
| 601 | class="" |
---|
| 602 | environment="" |
---|
[814] | 603 | rset="# @ rset = RSET_MCM_AFFINITY" |
---|
| 604 | task_affinity="# @ task_affinity = core(1)" |
---|
[693] | 605 | elif [[ $remote_host = ibmkisti ]] |
---|
| 606 | then |
---|
| 607 | network_to_use="# @ network.MPI = sn_all,shared,US" |
---|
| 608 | wall_clock_limit="# @ wall_clock_limit = $timestring" |
---|
[696] | 609 | if [[ $threads_per_task = 1 ]] |
---|
| 610 | then |
---|
| 611 | rset="# @ rset = RSET_MCM_AFFINITY" |
---|
| 612 | mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute" |
---|
| 613 | fi |
---|
[693] | 614 | environment="" |
---|
| 615 | use_shell="" |
---|
| 616 | data_limit="" |
---|
| 617 | image_size="" |
---|
[622] | 618 | elif [[ $remote_host = ibmku ]] |
---|
| 619 | then |
---|
| 620 | execute_in_shell="#!/usr/bin/ksh" |
---|
| 621 | use_shell="# @ shell = /usr/bin/ksh" |
---|
| 622 | consumable_memory="" |
---|
| 623 | environment="" |
---|
| 624 | network_to_use="# @ network.mpi = sn_all,shared,us" |
---|
| 625 | data_limit="" |
---|
| 626 | image_size="" |
---|
| 627 | elif [[ $remote_host = ibms ]] |
---|
| 628 | then |
---|
| 629 | network_to_use="# @ network.mpi = csss,shared,us" |
---|
| 630 | elif [[ $remote_host = ibmy ]] |
---|
| 631 | then |
---|
| 632 | consumable_memory="" |
---|
| 633 | network_to_use="" |
---|
[1] | 634 | fi |
---|
| 635 | |
---|
| 636 | cat > $job_to_send << %%END%% |
---|
[622] | 637 | $execute_in_shell |
---|
| 638 | $use_shell |
---|
[1] | 639 | |
---|
| 640 | # @ job_type = parallel |
---|
[693] | 641 | # @ job_name = $job_name |
---|
[1] | 642 | # @ resources = ConsumableCpus($threads_per_task) $consumable_memory |
---|
| 643 | # @ output = $remote_dayfile |
---|
| 644 | # @ error = $remote_dayfile |
---|
[693] | 645 | $wall_clock_limit |
---|
[622] | 646 | $image_size |
---|
[312] | 647 | $class |
---|
| 648 | $environment |
---|
[1] | 649 | $network_to_use |
---|
| 650 | $data_limit |
---|
[693] | 651 | $rset |
---|
| 652 | $mcm_affinity_options |
---|
[814] | 653 | $task_affinity |
---|
[1] | 654 | $notification |
---|
[693] | 655 | $notify_user |
---|
[1] | 656 | |
---|
| 657 | %%END%% |
---|
| 658 | |
---|
| 659 | if (( nodes > 0 )) |
---|
| 660 | then |
---|
| 661 | |
---|
[693] | 662 | if [[ $remote_host != ibmkisti ]] |
---|
| 663 | then |
---|
| 664 | |
---|
| 665 | cat >> $job_to_send << %%END%% |
---|
[1] | 666 | # @ node = $nodes |
---|
[622] | 667 | # @ tasks_per_node = $processes_per_node |
---|
[1] | 668 | # @ node_usage = $node_usage |
---|
| 669 | # @ queue |
---|
| 670 | |
---|
| 671 | %%END%% |
---|
| 672 | |
---|
[693] | 673 | else |
---|
| 674 | |
---|
| 675 | cat >> $job_to_send << %%END%% |
---|
[696] | 676 | # @ total_tasks = $mpi_tasks |
---|
[693] | 677 | # @ blocking = unlimited |
---|
| 678 | # @ queue |
---|
| 679 | |
---|
| 680 | %%END%% |
---|
| 681 | |
---|
| 682 | fi |
---|
| 683 | |
---|
[1] | 684 | else |
---|
| 685 | |
---|
| 686 | if [[ $remote_host != ibmy ]] |
---|
| 687 | then |
---|
| 688 | |
---|
| 689 | cat >> $job_to_send << %%END%% |
---|
| 690 | # @ blocking = unlimited |
---|
| 691 | # @ total_tasks = $numprocs |
---|
| 692 | # @ node_usage = $node_usage |
---|
| 693 | # @ queue |
---|
| 694 | |
---|
| 695 | %%END%% |
---|
| 696 | |
---|
| 697 | else |
---|
| 698 | |
---|
| 699 | cat >> $job_to_send << %%END%% |
---|
| 700 | # @ node = 1 |
---|
| 701 | # @ total_tasks = $numprocs |
---|
| 702 | # @ queue |
---|
| 703 | |
---|
| 704 | %%END%% |
---|
| 705 | |
---|
| 706 | fi |
---|
| 707 | |
---|
| 708 | fi |
---|
| 709 | |
---|
[696] | 710 | # workaround because of silly job filter on ibmkisti |
---|
| 711 | if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]] |
---|
| 712 | then |
---|
| 713 | echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send |
---|
| 714 | fi |
---|
| 715 | |
---|
[1] | 716 | elif [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs = 0 ]] |
---|
| 717 | then |
---|
| 718 | |
---|
| 719 | cat > $job_to_send << %%END%% |
---|
| 720 | #!/bin/ksh |
---|
| 721 | |
---|
| 722 | # @ job_type = serial |
---|
| 723 | # @ node_usage = $node_usage |
---|
| 724 | # @ job_name = palm |
---|
| 725 | # @ wall_clock_limit = ${timestring},$timestring |
---|
| 726 | # @ resources = ConsumableCpus(1) ConsumableMemory(1 gb) |
---|
| 727 | # @ output = $remote_dayfile |
---|
| 728 | # @ error = $remote_dayfile |
---|
[312] | 729 | $class |
---|
[1] | 730 | $notification |
---|
| 731 | |
---|
| 732 | # @ queue |
---|
| 733 | |
---|
| 734 | %%END%% |
---|
| 735 | |
---|
[108] | 736 | elif [[ $remote_host = lcfimm ]] |
---|
| 737 | then |
---|
| 738 | |
---|
| 739 | if [[ $numprocs != 0 ]] |
---|
| 740 | then |
---|
| 741 | cat > $job_to_send << %%END%% |
---|
| 742 | #!/bin/ksh |
---|
| 743 | #PBS -N $job_name |
---|
[552] | 744 | #PBS -A $project_account |
---|
[108] | 745 | #PBS -l walltime=$timestring |
---|
[622] | 746 | #PBS -l nodes=${nodes}:ppn=$processes_per_node |
---|
[108] | 747 | #PBS -l pmem=${memory}mb |
---|
| 748 | #PBS -m abe |
---|
| 749 | #PBS -o $remote_dayfile |
---|
| 750 | #PBS -j oe |
---|
| 751 | mpd & |
---|
| 752 | |
---|
| 753 | %%END%% |
---|
| 754 | |
---|
[168] | 755 | else |
---|
| 756 | cat > $job_to_send << %%END%% |
---|
| 757 | #!/bin/ksh |
---|
| 758 | #PBS -N $job_name |
---|
[552] | 759 | #PBS -A $project_account |
---|
[168] | 760 | #PBS -l walltime=$timestring |
---|
| 761 | #PBS -l ncpus=1 |
---|
| 762 | #PBS -l pmem=${memory}mb |
---|
| 763 | #PBS -m abe |
---|
| 764 | #PBS -o $remote_dayfile |
---|
| 765 | #PBS -j oe |
---|
| 766 | |
---|
| 767 | %%END%% |
---|
| 768 | |
---|
| 769 | fi |
---|
| 770 | |
---|
[1099] | 771 | elif [[ $remote_host = lcflow ]] |
---|
| 772 | then |
---|
| 773 | if [ $memory -gt 1900 ]; then |
---|
| 774 | use_himem="" |
---|
| 775 | else |
---|
| 776 | use_himem="#" |
---|
| 777 | fi |
---|
| 778 | if [[ $numprocs != 0 ]] |
---|
| 779 | then |
---|
| 780 | pe_set="#$ -pe impi $numprocs" |
---|
| 781 | else |
---|
| 782 | pe_set="#$ -pe impi 1" |
---|
| 783 | fi |
---|
| 784 | if [[ $queue = default ]] |
---|
| 785 | then |
---|
| 786 | queue_set="" |
---|
| 787 | else |
---|
| 788 | queue_set="#$ -q $queue" |
---|
| 789 | fi |
---|
| 790 | [[ "$disc_space" = "" ]] && disc_space=50 |
---|
| 791 | |
---|
| 792 | cat > $job_to_send << %%END%% |
---|
| 793 | #!/bin/bash |
---|
| 794 | #$ -S /bin/bash |
---|
| 795 | #$ -N $job_name |
---|
| 796 | #$ -cwd |
---|
| 797 | #$ -l h_rt=$timestring |
---|
| 798 | #$ -l h_vmem=${memory}M |
---|
| 799 | #$ -o $remote_dayfile |
---|
| 800 | #$ -j y |
---|
| 801 | $pe_set |
---|
| 802 | #$ -R y |
---|
| 803 | ${use_himem}#$ -l highmem=true |
---|
| 804 | #$ -l h_fsize=${disc_space}G |
---|
| 805 | $queue_set |
---|
| 806 | |
---|
| 807 | %%END%% |
---|
| 808 | |
---|
[1021] | 809 | elif [[ $remote_host = lck || $remote_host = lckordi || $remote_host = lcsb ]] |
---|
[368] | 810 | then |
---|
| 811 | |
---|
| 812 | if [[ $numprocs != 0 ]] |
---|
| 813 | then |
---|
| 814 | cat > $job_to_send << %%END%% |
---|
| 815 | #!/bin/ksh |
---|
| 816 | #PBS -N $job_name |
---|
| 817 | #PBS -l walltime=$timestring |
---|
| 818 | #PBS -l ncpus=$numprocs |
---|
| 819 | #PBS -l pmem=${memory}mb |
---|
| 820 | #PBS -o $remote_dayfile |
---|
[1021] | 821 | #PBS -l nodes=$nodes:ppn=${processes_per_node} |
---|
[368] | 822 | #PBS -j oe |
---|
| 823 | |
---|
| 824 | mpd & |
---|
| 825 | |
---|
| 826 | %%END%% |
---|
| 827 | |
---|
| 828 | else |
---|
| 829 | cat > $job_to_send << %%END%% |
---|
| 830 | #!/bin/ksh |
---|
| 831 | #PBS -N $job_name |
---|
| 832 | #PBS -l walltime=$timestring |
---|
| 833 | #PBS -l ncpus=1 |
---|
| 834 | #PBS -l pmem=${memory}mb |
---|
| 835 | #PBS -o $remote_dayfile |
---|
| 836 | #PBS -j oe |
---|
| 837 | |
---|
| 838 | %%END%% |
---|
| 839 | |
---|
| 840 | fi |
---|
| 841 | |
---|
[1040] | 842 | elif [[ $remote_host = lckiaps ]] |
---|
| 843 | then |
---|
| 844 | |
---|
| 845 | if [[ $numprocs != 0 ]] |
---|
| 846 | then |
---|
| 847 | cat > $job_to_send << %%END%% |
---|
| 848 | #!/bin/ksh |
---|
| 849 | #PBS -N $job_name |
---|
| 850 | #PBS -l walltime=$timestring |
---|
| 851 | #PBS -l select=1:ncpus=$numprocs |
---|
| 852 | #PBS -l pmem=${memory}mb |
---|
| 853 | #PBS -q $queue |
---|
| 854 | #PBS -o $remote_dayfile |
---|
| 855 | #PBS -j oe |
---|
| 856 | #PBS -V |
---|
| 857 | |
---|
| 858 | %%END%% |
---|
| 859 | |
---|
| 860 | else |
---|
| 861 | cat > $job_to_send << %%END%% |
---|
| 862 | #!/bin/ksh |
---|
| 863 | #PBS -N $job_name |
---|
| 864 | #PBS -l walltime=$timestring |
---|
| 865 | #PBS -l ncpus=1 |
---|
| 866 | #PBS -l pmem=${memory}mb |
---|
| 867 | #PBS -o $remote_dayfile |
---|
| 868 | #PBS -j oe |
---|
| 869 | |
---|
| 870 | %%END%% |
---|
| 871 | |
---|
| 872 | fi |
---|
| 873 | |
---|
[693] | 874 | elif [[ $remote_host = lcyon ]] |
---|
| 875 | then |
---|
| 876 | |
---|
| 877 | if [[ $numprocs != 0 ]] |
---|
| 878 | then |
---|
| 879 | cat > $job_to_send << %%END%% |
---|
| 880 | #!/bin/ksh |
---|
| 881 | #PBS -N $job_name |
---|
| 882 | #PBS -l walltime=$timestring |
---|
| 883 | #PBS -l ncpus=$numprocs |
---|
| 884 | #PBS -l pmem=${memory}mb |
---|
| 885 | #PBS -o $remote_dayfile |
---|
| 886 | #PBS -j oe |
---|
| 887 | |
---|
| 888 | %%END%% |
---|
| 889 | |
---|
| 890 | else |
---|
| 891 | cat > $job_to_send << %%END%% |
---|
| 892 | #!/bin/ksh |
---|
| 893 | #PBS -N $job_name |
---|
| 894 | #PBS -l walltime=$timestring |
---|
| 895 | #PBS -l ncpus=1 |
---|
| 896 | #PBS -l pmem=${memory}mb |
---|
| 897 | #PBS -o $remote_dayfile |
---|
| 898 | #PBS -j oe |
---|
| 899 | |
---|
| 900 | %%END%% |
---|
| 901 | |
---|
| 902 | fi |
---|
| 903 | |
---|
[181] | 904 | elif [[ $remote_host = lcsgih || $remote_host = lcsgib ]] |
---|
[179] | 905 | then |
---|
| 906 | |
---|
[376] | 907 | if [[ "$sgi_feature" != "" ]] |
---|
| 908 | then |
---|
| 909 | feature_directive="#PBS -l feature=$sgi_feature" |
---|
| 910 | else |
---|
| 911 | feature_directive="" |
---|
| 912 | fi |
---|
[799] | 913 | |
---|
[416] | 914 | if [[ $queue = dataq || $queue = permq ]] |
---|
[399] | 915 | then |
---|
| 916 | feature_directive="#PBS -l feature=data" |
---|
| 917 | fi |
---|
[376] | 918 | |
---|
[789] | 919 | if [[ $queue = testq || $queue = mediumq || $queue = bigq || $queue = workq || $queue = dataq || $queue = permq || $queue = serialq || $queue = special1q ]] |
---|
[191] | 920 | then |
---|
| 921 | queue_directive="#PBS -q $queue" |
---|
| 922 | else |
---|
| 923 | queue_directive="" |
---|
| 924 | fi |
---|
| 925 | |
---|
[352] | 926 | if [[ $email_notification = none ]] |
---|
| 927 | then |
---|
| 928 | email_directive="" |
---|
| 929 | else |
---|
| 930 | email_directive="#PBS -M $email_notification" |
---|
| 931 | fi |
---|
| 932 | |
---|
[179] | 933 | if [[ $numprocs != 0 ]] |
---|
| 934 | then |
---|
| 935 | cat > $job_to_send << %%END%% |
---|
[181] | 936 | #!/bin/bash |
---|
[179] | 937 | #PBS -N $job_name |
---|
| 938 | #PBS -l walltime=$timestring |
---|
[622] | 939 | #PBS -l nodes=$nodes:ppn=${processes_per_node} |
---|
[181] | 940 | #PBS -l naccesspolicy=$node_usage |
---|
[179] | 941 | #PBS -o $remote_dayfile |
---|
| 942 | #PBS -j oe |
---|
[376] | 943 | $feature_directive |
---|
[191] | 944 | $queue_directive |
---|
[352] | 945 | $email_directive |
---|
[179] | 946 | |
---|
[622] | 947 | eval \`/sw/swdist/bin/modulesinit\` |
---|
| 948 | #. /usr/share/modules/init/bash |
---|
[892] | 949 | $init_cmds |
---|
[493] | 950 | $module_calls |
---|
[374] | 951 | |
---|
[181] | 952 | echo ld_library_path=\$LD_LIBRARY_PATH |
---|
[179] | 953 | |
---|
| 954 | %%END%% |
---|
| 955 | |
---|
| 956 | else |
---|
| 957 | cat > $job_to_send << %%END%% |
---|
| 958 | #PBS -S /bin/bash |
---|
| 959 | #PBS -N $job_name |
---|
| 960 | #PBS -l walltime=$timestring |
---|
| 961 | #PBS -l ncpus=1 |
---|
| 962 | #PBS -o $remote_dayfile |
---|
[475] | 963 | #PBS -j oe |
---|
[400] | 964 | $queue_directive |
---|
| 965 | $email_directive |
---|
[179] | 966 | |
---|
[622] | 967 | eval \`/sw/swdist/bin/modulesinit\` |
---|
| 968 | #. /usr/share/modules/init/bash |
---|
[892] | 969 | $init_cmds |
---|
[493] | 970 | $module_calls |
---|
[475] | 971 | |
---|
[179] | 972 | %%END%% |
---|
| 973 | |
---|
| 974 | fi |
---|
| 975 | |
---|
[892] | 976 | elif [[ $remote_host = lcxe6 ]] |
---|
[164] | 977 | then |
---|
| 978 | |
---|
| 979 | if [[ $numprocs != 0 ]] |
---|
| 980 | then |
---|
| 981 | cat > $job_to_send << %%END%% |
---|
[799] | 982 | #!/bin/ksh |
---|
[164] | 983 | #PBS -S /bin/ksh |
---|
| 984 | #PBS -N $job_name |
---|
[552] | 985 | #PBS -A $project_account |
---|
[206] | 986 | #PBS -j oe |
---|
[164] | 987 | #PBS -l walltime=$timestring |
---|
| 988 | #PBS -l mppwidth=${numprocs} |
---|
[622] | 989 | #PBS -l mppnppn=${processes_per_node} |
---|
[164] | 990 | #PBS -m abe |
---|
| 991 | #PBS -o $remote_dayfile |
---|
[492] | 992 | $email_directive |
---|
[164] | 993 | |
---|
[892] | 994 | $init_cmds |
---|
[493] | 995 | $module_calls |
---|
[343] | 996 | |
---|
[164] | 997 | %%END%% |
---|
| 998 | |
---|
[108] | 999 | else |
---|
| 1000 | cat > $job_to_send << %%END%% |
---|
| 1001 | #!/bin/ksh |
---|
[168] | 1002 | #PBS -S /bin/ksh |
---|
[108] | 1003 | #PBS -N $job_name |
---|
[552] | 1004 | #PBS -A $project_account |
---|
[206] | 1005 | #PBS -j oe |
---|
[108] | 1006 | #PBS -l walltime=$timestring |
---|
| 1007 | #PBS -l ncpus=1 |
---|
| 1008 | #PBS -l pmem=${memory}mb |
---|
| 1009 | #PBS -m abe |
---|
[492] | 1010 | $email_directive |
---|
[108] | 1011 | #PBS -o $remote_dayfile |
---|
| 1012 | |
---|
[892] | 1013 | $init_cmds |
---|
[493] | 1014 | $module_calls |
---|
[343] | 1015 | |
---|
[108] | 1016 | %%END%% |
---|
| 1017 | |
---|
| 1018 | fi |
---|
| 1019 | |
---|
[440] | 1020 | elif [[ $remote_host = lckyoto ]] |
---|
[437] | 1021 | then |
---|
| 1022 | |
---|
[440] | 1023 | cat > $job_to_send << %%END%% |
---|
[799] | 1024 | #!/bin/ksh |
---|
[440] | 1025 | # @\$-o $remote_dayfile |
---|
| 1026 | # @\$-eo -oi |
---|
| 1027 | # @\$-lP 16 |
---|
[799] | 1028 | # @\$-lp 1 |
---|
[440] | 1029 | # @\$-lm 28gb -llm unlimited -ls unlimited |
---|
| 1030 | # @\$-q $queue |
---|
| 1031 | # @\$-Pvn abs_pack |
---|
| 1032 | ##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack |
---|
| 1033 | #. /thin/local/etc/setprofile/intel-11.0.sh |
---|
| 1034 | #. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh |
---|
| 1035 | . ~/.myprofile |
---|
| 1036 | #. /home2/t/t51254/palm/current_version/myprofile |
---|
| 1037 | #. /thin/apps/pgi/mpi.sh |
---|
| 1038 | # |
---|
| 1039 | env |
---|
| 1040 | # |
---|
| 1041 | set -x |
---|
| 1042 | |
---|
| 1043 | %%END%% |
---|
| 1044 | |
---|
| 1045 | elif [[ $remote_host = lcxt5m ]] |
---|
| 1046 | then |
---|
| 1047 | |
---|
[437] | 1048 | if [[ $numprocs != 0 ]] |
---|
| 1049 | then |
---|
| 1050 | cat > $job_to_send << %%END%% |
---|
[799] | 1051 | #!/bin/ksh |
---|
[437] | 1052 | #PBS -S /bin/ksh |
---|
| 1053 | #PBS -N $job_name |
---|
| 1054 | #PBS -j oe |
---|
| 1055 | #PBS -l walltime=$timestring |
---|
| 1056 | #PBS -l mppwidth=${numprocs} |
---|
[622] | 1057 | #PBS -l mppnppn=${processes_per_node} |
---|
[437] | 1058 | #PBS -m abe |
---|
| 1059 | #PBS -o $remote_dayfile |
---|
| 1060 | |
---|
[892] | 1061 | $init_cmds |
---|
[493] | 1062 | $module_calls |
---|
[437] | 1063 | |
---|
| 1064 | %%END%% |
---|
| 1065 | |
---|
| 1066 | else |
---|
| 1067 | cat > $job_to_send << %%END%% |
---|
| 1068 | #!/bin/ksh |
---|
| 1069 | #PBS -S /bin/ksh |
---|
| 1070 | #PBS -N $job_name |
---|
| 1071 | #PBS -j oe |
---|
| 1072 | #PBS -l walltime=$timestring |
---|
| 1073 | #PBS -l ncpus=1 |
---|
| 1074 | #PBS -l pmem=${memory}mb |
---|
| 1075 | #PBS -m abe |
---|
| 1076 | #PBS -o $remote_dayfile |
---|
| 1077 | |
---|
[892] | 1078 | $init_cmds |
---|
[493] | 1079 | $module_calls |
---|
[437] | 1080 | |
---|
| 1081 | %%END%% |
---|
| 1082 | |
---|
| 1083 | fi |
---|
| 1084 | |
---|
[1099] | 1085 | elif [[ $remote_host = lckyuh ]] |
---|
| 1086 | then |
---|
| 1087 | cat > $job_to_send << %%END%% |
---|
| 1088 | #!/bin/bash |
---|
| 1089 | #PJM -L "rscgrp=$queue" |
---|
| 1090 | #PJM -L "node=$nodes" |
---|
| 1091 | #PJM --mpi "proc=$numprocs" |
---|
| 1092 | #PJM -L "elapse=$timestring" |
---|
| 1093 | #PJM -o $remote_dayfile |
---|
| 1094 | #PJM -j |
---|
| 1095 | #PJM -X |
---|
| 1096 | #PJM --no-stging |
---|
| 1097 | |
---|
| 1098 | export LANG=en_US.UTF-8 |
---|
| 1099 | %%END%% |
---|
| 1100 | |
---|
[1090] | 1101 | elif [[ $remote_host = lckyut ]] |
---|
| 1102 | then |
---|
| 1103 | cat > $job_to_send << %%END%% |
---|
| 1104 | #!/bin/bash |
---|
[1099] | 1105 | #PJM -L "rscgrp=$queue" |
---|
[1090] | 1106 | #PJM -L "vnode=$numprocs" |
---|
| 1107 | #PJM -L "vnode-core=1" |
---|
| 1108 | #PJM -L "elapse=$timestring" |
---|
| 1109 | #PJM --mpi proc=$numprocs |
---|
| 1110 | #PJM -o $remote_dayfile |
---|
| 1111 | #PJM -j |
---|
[1099] | 1112 | #PJM -X |
---|
| 1113 | #PJM --no-stging |
---|
[1090] | 1114 | |
---|
| 1115 | export LANG=en_US.UTF-8 |
---|
| 1116 | %%END%% |
---|
| 1117 | |
---|
[1] | 1118 | elif [[ $remote_host = nech ]] |
---|
| 1119 | then |
---|
| 1120 | |
---|
| 1121 | if (( nodes > 1 )) |
---|
| 1122 | then |
---|
| 1123 | cat > $job_to_send << %%END%% |
---|
| 1124 | #!/bin/ksh |
---|
[622] | 1125 | #PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime |
---|
[1] | 1126 | #PBS -l ${qsubmem}=${Memory}gb |
---|
| 1127 | #PBS -b $nodes |
---|
| 1128 | #PBS -o $remote_dayfile |
---|
| 1129 | #PBS -N palm |
---|
| 1130 | #PBS -j o |
---|
| 1131 | #PBS -T mpisx |
---|
| 1132 | |
---|
| 1133 | %%END%% |
---|
| 1134 | |
---|
| 1135 | elif [[ $numprocs != 0 ]] |
---|
| 1136 | then |
---|
| 1137 | cat > $job_to_send << %%END%% |
---|
| 1138 | #!/bin/ksh |
---|
[622] | 1139 | #PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime |
---|
[1] | 1140 | #PBS -l ${qsubmem}=${Memory}gb |
---|
| 1141 | #PBS -o $remote_dayfile |
---|
| 1142 | #PBS -N palm |
---|
| 1143 | #PBS -j o |
---|
| 1144 | |
---|
| 1145 | %%END%% |
---|
| 1146 | |
---|
| 1147 | else |
---|
| 1148 | cat > $job_to_send << %%END%% |
---|
| 1149 | #!/bin/ksh |
---|
| 1150 | #PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime |
---|
| 1151 | #PBS -o $remote_dayfile |
---|
| 1152 | #PBS -j o |
---|
| 1153 | |
---|
| 1154 | %%END%% |
---|
| 1155 | |
---|
| 1156 | fi |
---|
| 1157 | |
---|
[251] | 1158 | elif [[ $remote_host = necriam ]] |
---|
[35] | 1159 | then |
---|
| 1160 | |
---|
| 1161 | if (( nodes > 1 )) |
---|
| 1162 | then |
---|
| 1163 | cat > $job_to_send << %%END%% |
---|
| 1164 | #!/bin/ksh |
---|
| 1165 | #PBS -b $nodes |
---|
| 1166 | #PBS -o $remote_dayfile |
---|
[253] | 1167 | #PBS -N $job_name |
---|
[35] | 1168 | #PBS -j o |
---|
[251] | 1169 | #PBS -v MPIPROGINV=YES |
---|
[35] | 1170 | |
---|
| 1171 | %%END%% |
---|
| 1172 | |
---|
| 1173 | elif [[ $numprocs != 0 ]] |
---|
| 1174 | then |
---|
| 1175 | cat > $job_to_send << %%END%% |
---|
| 1176 | #!/bin/ksh |
---|
| 1177 | #PBS -q ${queue} |
---|
| 1178 | #PBS -o $remote_dayfile |
---|
[253] | 1179 | #PBS -N $job_name |
---|
[35] | 1180 | #PBS -j o |
---|
[251] | 1181 | #PBS -v MPIPROGINV=YES |
---|
[35] | 1182 | |
---|
| 1183 | %%END%% |
---|
| 1184 | |
---|
| 1185 | else |
---|
| 1186 | cat > $job_to_send << %%END%% |
---|
| 1187 | #!/bin/ksh |
---|
| 1188 | #PBS -o $remote_dayfile |
---|
| 1189 | #PBS -j o |
---|
| 1190 | |
---|
| 1191 | %%END%% |
---|
| 1192 | |
---|
| 1193 | fi |
---|
| 1194 | |
---|
[1] | 1195 | elif [[ $remote_host = lctit ]] |
---|
| 1196 | then |
---|
| 1197 | cat > $job_to_send << %%END%% |
---|
[635] | 1198 | #!/bin/ksh |
---|
[892] | 1199 | $init_cmds |
---|
[678] | 1200 | $module_calls |
---|
| 1201 | |
---|
[1] | 1202 | %%END%% |
---|
| 1203 | |
---|
| 1204 | # OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN |
---|
[678] | 1205 | if [[ $tasks_per_node != $processes_per_node ]] |
---|
| 1206 | then |
---|
| 1207 | submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue " |
---|
| 1208 | else |
---|
| 1209 | submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue " |
---|
| 1210 | fi |
---|
[1] | 1211 | |
---|
| 1212 | else |
---|
| 1213 | |
---|
| 1214 | cat > $job_to_send << %%END%% |
---|
| 1215 | # @\$-q ${queue} |
---|
| 1216 | # @\$-l${qsubtime} $timestring |
---|
| 1217 | # @\$-l${qsubmem} ${memory}mb |
---|
| 1218 | # @\$-o $remote_dayfile |
---|
| 1219 | # @\$-eo |
---|
| 1220 | |
---|
| 1221 | %%END%% |
---|
| 1222 | |
---|
| 1223 | fi |
---|
| 1224 | |
---|
| 1225 | |
---|
| 1226 | # BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP |
---|
| 1227 | # BEI EXIT VERANLASSEN |
---|
| 1228 | # VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT |
---|
| 1229 | # AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH |
---|
| 1230 | if [[ $delete_dayfile = false && $remote_host != $local_host ]] |
---|
| 1231 | then |
---|
| 1232 | echo "set +vx" >> $job_to_send |
---|
| 1233 | echo "trap '" >> $job_to_send |
---|
| 1234 | echo "set +vx" >> $job_to_send |
---|
[1099] | 1235 | if [[ $(echo $remote_host | cut -c1-3) = ibm || $(echo $remote_host | cut -c1-5) = lcsgi || $(echo $remote_host | cut -c1-3) = nec || $remote_host = lcflow || $remote_host = lckiaps || $remote_host = lckyu* ]] |
---|
[1] | 1236 | then |
---|
[622] | 1237 | if [[ $remote_host = ibmh ]] |
---|
[1] | 1238 | then |
---|
| 1239 | return_queue=c1 |
---|
[693] | 1240 | elif [[ $remote_host = ibmkisti ]] |
---|
| 1241 | then |
---|
| 1242 | return_queue=class.1-2 |
---|
[622] | 1243 | elif [[ $remote_host = ibmku ]] |
---|
| 1244 | then |
---|
| 1245 | return_queue=sdbg2 |
---|
[1] | 1246 | elif [[ $remote_host = ibms ]] |
---|
| 1247 | then |
---|
| 1248 | return_queue=p_normal |
---|
| 1249 | elif [[ $remote_host = ibmy ]] |
---|
| 1250 | then |
---|
| 1251 | return_queue=serial |
---|
[325] | 1252 | elif [[ $remote_host = lcsgih || $remote_host = lcsgib ]] |
---|
| 1253 | then |
---|
[326] | 1254 | return_queue=serialq |
---|
[251] | 1255 | elif [[ $remote_host = necriam ]] |
---|
[1] | 1256 | then |
---|
[253] | 1257 | return_queue=SP |
---|
[1040] | 1258 | elif [[ $remote_host = lckiaps ]] |
---|
| 1259 | then |
---|
| 1260 | return_queue=express |
---|
[1099] | 1261 | elif [[ $remote_host = lckyuh ]] |
---|
| 1262 | then |
---|
| 1263 | return_queue=cx-single |
---|
[1090] | 1264 | elif [[ $remote_host = lckyut ]] |
---|
| 1265 | then |
---|
| 1266 | return_queue=cx-single |
---|
[1] | 1267 | else |
---|
| 1268 | return_queue=unknown |
---|
| 1269 | fi |
---|
| 1270 | |
---|
| 1271 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
| 1272 | then |
---|
| 1273 | |
---|
[622] | 1274 | if [[ $remote_host = ibmku ]] |
---|
| 1275 | then |
---|
| 1276 | echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1277 | echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1278 | else |
---|
| 1279 | echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1280 | fi |
---|
[1] | 1281 | echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1282 | echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1283 | echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1284 | echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send |
---|
| 1285 | echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1286 | echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send |
---|
[312] | 1287 | if [[ $host != "ibmh" ]] |
---|
| 1288 | then |
---|
| 1289 | echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1290 | fi |
---|
[1] | 1291 | echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1292 | echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1293 | |
---|
| 1294 | echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1295 | echo "echo \" \" >> scpjob.$kennung" >> $job_to_send |
---|
| 1296 | |
---|
| 1297 | echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send |
---|
[1094] | 1298 | echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send |
---|
[622] | 1299 | if [[ $remote_host = ibmku ]] |
---|
| 1300 | then |
---|
| 1301 | echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1302 | fi |
---|
[1] | 1303 | echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send |
---|
| 1304 | |
---|
| 1305 | elif [[ $remote_host = nech ]] |
---|
| 1306 | then |
---|
| 1307 | echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send |
---|
| 1308 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1309 | echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send |
---|
| 1310 | echo "#PBS -o last_job_transfer_protocol" >> $job_to_send |
---|
| 1311 | echo "#PBS -j o" >> $job_to_send |
---|
| 1312 | echo " " >> $job_to_send |
---|
| 1313 | echo "set -x" >> $job_to_send |
---|
| 1314 | echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send |
---|
[1094] | 1315 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
[1] | 1316 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1317 | echo "%%END%%" >> $job_to_send |
---|
| 1318 | |
---|
[251] | 1319 | elif [[ $remote_host = necriam ]] |
---|
[35] | 1320 | then |
---|
| 1321 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1322 | echo "#PBS -q $return_queue" >> $job_to_send |
---|
| 1323 | echo "#PBS -o last_job_transfer_protocol" >> $job_to_send |
---|
| 1324 | echo "#PBS -j o" >> $job_to_send |
---|
| 1325 | echo " " >> $job_to_send |
---|
| 1326 | echo "set -x" >> $job_to_send |
---|
[1094] | 1327 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
[35] | 1328 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1329 | echo "%%END%%" >> $job_to_send |
---|
| 1330 | |
---|
[1099] | 1331 | elif [[ $remote_host = lckyuh ]] |
---|
| 1332 | then |
---|
| 1333 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1334 | echo "#!/bin/bash" >> $job_to_send |
---|
| 1335 | echo "#PJM -L \"node=1\"" >> $job_to_send |
---|
| 1336 | echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send |
---|
| 1337 | echo "#PJM --no-stging" >> $job_to_send |
---|
| 1338 | echo "#PJM -L \"elapse=30:00\"" >> $job_to_send |
---|
| 1339 | echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
| 1340 | echo "#PJM -j" >> $job_to_send |
---|
| 1341 | echo " " >> $job_to_send |
---|
| 1342 | echo "export LANG=en_US.UTF-8" >> $job_to_send |
---|
| 1343 | echo "set -x" >> $job_to_send |
---|
| 1344 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1345 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1346 | echo "%%END%%" >> $job_to_send |
---|
| 1347 | |
---|
[1090] | 1348 | elif [[ $remote_host = lckyut ]] |
---|
| 1349 | then |
---|
| 1350 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1351 | echo "#!/bin/bash" >> $job_to_send |
---|
| 1352 | echo "#PJM -L \"vnode=1\"" >> $job_to_send |
---|
| 1353 | echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send |
---|
| 1354 | echo "#PJM --no-stging" >> $job_to_send |
---|
| 1355 | echo "#PJM -L \"elapse=30:00\"" >> $job_to_send |
---|
| 1356 | echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
| 1357 | echo "#PJM -j" >> $job_to_send |
---|
| 1358 | echo " " >> $job_to_send |
---|
| 1359 | echo "export LANG=en_US.UTF-8" >> $job_to_send |
---|
| 1360 | echo "set -x" >> $job_to_send |
---|
[1094] | 1361 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
[1090] | 1362 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1363 | echo "%%END%%" >> $job_to_send |
---|
| 1364 | |
---|
[181] | 1365 | elif [[ $(echo $remote_host | cut -c1-5) = lcsgi ]] |
---|
| 1366 | then |
---|
| 1367 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1368 | echo "#!/bin/bash" >> $job_to_send |
---|
| 1369 | echo "#PBS -N job_protocol_transfer" >> $job_to_send |
---|
[325] | 1370 | echo "#PBS -l walltime=00:30:00" >> $job_to_send |
---|
[181] | 1371 | echo "#PBS -l nodes=1:ppn=1" >> $job_to_send |
---|
[366] | 1372 | echo "#PBS -l feature=data" >> $job_to_send |
---|
[181] | 1373 | echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
| 1374 | echo "#PBS -j oe" >> $job_to_send |
---|
| 1375 | echo " " >> $job_to_send |
---|
| 1376 | echo ". /usr/share/modules/init/bash" >> $job_to_send |
---|
| 1377 | echo "set -x" >> $job_to_send |
---|
[1094] | 1378 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
[181] | 1379 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1380 | echo "%%END%%" >> $job_to_send |
---|
| 1381 | |
---|
[1099] | 1382 | elif [[ $remote_host = lcflow ]] |
---|
| 1383 | then |
---|
| 1384 | echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send |
---|
| 1385 | echo "#!/bin/bash" >> $job_to_send |
---|
| 1386 | echo "SGEPREFIX -S /bin/bash" >> $job_to_send |
---|
| 1387 | echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send |
---|
| 1388 | echo "SGEPREFIX -cwd" >> $job_to_send |
---|
| 1389 | echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send |
---|
| 1390 | echo "SGEPREFIX -l h_vmem=100M" >> $job_to_send |
---|
| 1391 | echo "SGEPREFIX -j y" >> $job_to_send |
---|
| 1392 | echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send |
---|
| 1393 | echo " " >> $job_to_send |
---|
| 1394 | echo "set -x" >> $job_to_send |
---|
| 1395 | echo "export PALM_BIN=$PALM_BIN" | sed -e 's:'$HOME':$HOME:' >> $job_to_send |
---|
| 1396 | echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send |
---|
| 1397 | echo "" >> $job_to_send |
---|
| 1398 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1399 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1400 | echo "rm -f scpjob.${kennung}" >> $job_to_send |
---|
| 1401 | echo "%%END%%" >> $job_to_send |
---|
| 1402 | echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send |
---|
| 1403 | echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send |
---|
| 1404 | |
---|
[1] | 1405 | else |
---|
| 1406 | |
---|
| 1407 | echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send |
---|
| 1408 | echo "# @\\\$-q $return_queue" >> $job_to_send |
---|
| 1409 | echo "# @\\\$-l${qsubtime} 10" >> $job_to_send |
---|
| 1410 | echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send |
---|
| 1411 | if [[ $remote_host = t3ej2 || $remote_host = t3ej5 || $remote_host = t3es ]] |
---|
| 1412 | then |
---|
| 1413 | echo "# @\$-l mpp_p=0" >> $job_to_send |
---|
| 1414 | fi |
---|
| 1415 | echo '# @\$-lF 10mb' >> $job_to_send |
---|
| 1416 | # echo '# @\$-o /dev/null' >> $job_to_send |
---|
| 1417 | echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send |
---|
| 1418 | echo '# @\\\$-eo' >> $job_to_send |
---|
| 1419 | echo " " >> $job_to_send |
---|
| 1420 | if [[ $remote_host = t3ej2 || $remote_host = t3ej5 ]] |
---|
| 1421 | then |
---|
| 1422 | echo "set +vx" >> $job_to_send |
---|
| 1423 | echo ". .profile" >> $job_to_send |
---|
| 1424 | fi |
---|
| 1425 | echo "set -x" >> $job_to_send |
---|
[1094] | 1426 | echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send |
---|
[1] | 1427 | echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send |
---|
| 1428 | echo "%%END%%" >> $job_to_send |
---|
| 1429 | fi |
---|
| 1430 | |
---|
| 1431 | if [[ $(echo $remote_host | cut -c1-3) = ibm ]] |
---|
| 1432 | then |
---|
| 1433 | echo "llsubmit scpjob.$kennung" >> $job_to_send |
---|
[181] | 1434 | elif [[ $(echo $remote_host | cut -c1-5) = lcsgi ]] |
---|
| 1435 | then |
---|
[748] | 1436 | echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send |
---|
| 1437 | echo "chmod u+x scpjob.$kennung" >> $job_to_send |
---|
| 1438 | echo "msub scpjob.$kennung" >> $job_to_send |
---|
[1] | 1439 | elif [[ $remote_host = t3eb || $remote_host = t3eh || $remote_host = t3ej2 || $remote_host = t3ej5 ]] |
---|
| 1440 | then |
---|
| 1441 | echo "qsub -J n scpjob.$kennung" >> $job_to_send |
---|
| 1442 | elif [[ $remote_host = t3es ]] |
---|
| 1443 | then |
---|
| 1444 | echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send |
---|
[1043] | 1445 | elif [[ $remote_host = lckiaps ]] |
---|
| 1446 | then |
---|
| 1447 | echo "mv scpjob.$kennung $job_catalog" >> $job_to_send |
---|
[1094] | 1448 | echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send |
---|
[1043] | 1449 | echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send |
---|
[1099] | 1450 | elif [[ $remote_host = lckyu* ]] |
---|
[1090] | 1451 | then |
---|
[1094] | 1452 | echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send |
---|
| 1453 | echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send |
---|
[1099] | 1454 | elif [[ $remote_host = lcflow ]] |
---|
| 1455 | then |
---|
| 1456 | echo "mv scpjob.$kennung $job_catalog" >> $job_to_send |
---|
| 1457 | echo "ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send |
---|
[1] | 1458 | else |
---|
[1040] | 1459 | echo "$submcom scpjob.$kennung" >> $job_to_send |
---|
[1] | 1460 | fi |
---|
[1043] | 1461 | if [[ $remote_host != ibmku && $remote_host != lckiaps ]] |
---|
[622] | 1462 | then |
---|
| 1463 | echo "rm scpjob.$kennung" >> $job_to_send |
---|
| 1464 | fi |
---|
[1] | 1465 | if [[ $remote_host = nech ]] |
---|
| 1466 | then |
---|
| 1467 | echo "cd -" >> $job_to_send |
---|
| 1468 | fi |
---|
| 1469 | else |
---|
| 1470 | # echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send |
---|
| 1471 | echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send |
---|
| 1472 | fi |
---|
| 1473 | echo "set -x" >> $job_to_send |
---|
| 1474 | echo " ' exit" >> $job_to_send |
---|
| 1475 | echo "set -x" >> $job_to_send |
---|
| 1476 | fi |
---|
| 1477 | |
---|
| 1478 | |
---|
| 1479 | |
---|
| 1480 | # EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN |
---|
| 1481 | cat $file_to_send >> $job_to_send |
---|
[69] | 1482 | |
---|
[1] | 1483 | if [[ $remote_host = ibm ]] |
---|
| 1484 | then |
---|
| 1485 | echo " " >> $job_to_send |
---|
| 1486 | echo "exit" >> $job_to_send |
---|
| 1487 | fi |
---|
[635] | 1488 | |
---|
| 1489 | # remove job file |
---|
[1099] | 1490 | if [[ $remote_host = lctit || $remote_host = ibmku || $remote_host = lcflow ]] |
---|
[69] | 1491 | then |
---|
| 1492 | echo " " >> $job_to_send |
---|
| 1493 | echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send |
---|
| 1494 | fi |
---|
[1] | 1495 | |
---|
| 1496 | |
---|
| 1497 | |
---|
| 1498 | # USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN |
---|
| 1499 | if [[ -z $remote_user ]] |
---|
| 1500 | then |
---|
| 1501 | if [[ $remote_host = t3eb || $remote_host = t3eh || $remote_host = t3ej2 || $remote_host = t3ej5 || $remote_host = t3es || $remote_host = vpp ]] |
---|
| 1502 | then |
---|
| 1503 | grep $remote_addres ~/.netrc | read dum dum dum remote_user dum dum |
---|
| 1504 | fi |
---|
| 1505 | fi |
---|
| 1506 | |
---|
| 1507 | |
---|
| 1508 | |
---|
| 1509 | # JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN |
---|
| 1510 | if [[ $no_submit = false ]] |
---|
| 1511 | then |
---|
| 1512 | if [[ $remote_host != $local_host ]] |
---|
| 1513 | then |
---|
| 1514 | [[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..." |
---|
[82] | 1515 | if [[ $remote_host = ibms || $remote_host = ibmy ]] # ssh on ibms cannot handle "~/" |
---|
[1] | 1516 | then |
---|
[82] | 1517 | job_catalog_save=$job_catalog |
---|
| 1518 | job_catalog=job_queue |
---|
| 1519 | elif [[ $remote_host = nech ]] |
---|
| 1520 | then |
---|
| 1521 | job_catalog_save=$job_catalog |
---|
| 1522 | job_catalog=/hpf/b/${remote_user}/job_queue |
---|
| 1523 | fi |
---|
[1096] | 1524 | if [[ $remote_host = nech ]] |
---|
[82] | 1525 | then |
---|
| 1526 | # DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ |
---|
| 1527 | # TRANSFERIERT WERDEN |
---|
[1094] | 1528 | scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost |
---|
[1] | 1529 | else |
---|
[1094] | 1530 | scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost |
---|
[1] | 1531 | fi |
---|
[82] | 1532 | if [[ $? = 1 ]] |
---|
| 1533 | then |
---|
| 1534 | locat=scp; exit |
---|
| 1535 | fi |
---|
| 1536 | if [[ $remote_host = ibms ]] |
---|
| 1537 | then |
---|
| 1538 | job_catalog=$job_catalog_save |
---|
| 1539 | fi |
---|
[1] | 1540 | [[ $verify = true ]] && printf "\n >>> finished\n" |
---|
| 1541 | else |
---|
| 1542 | eval job_catalog=$job_catalog |
---|
| 1543 | cp $job_to_send ${job_catalog}/$job_on_remhost |
---|
| 1544 | fi |
---|
| 1545 | |
---|
| 1546 | |
---|
| 1547 | |
---|
| 1548 | # NQS- BZW. LOADLEVELER-JOB STARTEN |
---|
| 1549 | if [[ $remote_host != $local_host ]] |
---|
| 1550 | then |
---|
| 1551 | [[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n" |
---|
[635] | 1552 | |
---|
| 1553 | if [[ $(echo $remote_host | cut -c1-5) = lcsgi && $prio = true ]] |
---|
[1] | 1554 | then |
---|
[635] | 1555 | printf "\n >>> submit with HLRN qos-feature hiprio...\n" |
---|
[1094] | 1556 | ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost" |
---|
[635] | 1557 | elif [[ $remote_host = ibmku ]] |
---|
| 1558 | then |
---|
[1094] | 1559 | ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost" |
---|
[1099] | 1560 | elif [[ $remote_host = lcflow ]] |
---|
| 1561 | then |
---|
| 1562 | ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost" |
---|
[1] | 1563 | else |
---|
[1094] | 1564 | ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost" |
---|
[82] | 1565 | fi |
---|
[1] | 1566 | |
---|
| 1567 | [[ $verify = true ]] && printf " >>> o.k.\n" |
---|
| 1568 | else |
---|
| 1569 | cd $job_catalog |
---|
[210] | 1570 | if [[ $(echo $local_host | cut -c1-5) = lcsgi || $(echo $local_host | cut -c1-3) = ibm ]] |
---|
[1] | 1571 | then |
---|
| 1572 | eval $submcom $job_on_remhost |
---|
[1099] | 1573 | elif [[ $local_host = lcfimm || $local_host = lctit || $localhost = lcxe6 || $localhost = lck || $localhost = lckordi || $localhost = lcyon || $localhost = lcsb || $localhost = lckyu* ]] |
---|
[108] | 1574 | then |
---|
[635] | 1575 | chmod u+x $job_on_remhost |
---|
| 1576 | echo "$submcom $job_on_remhost" |
---|
[108] | 1577 | eval $submcom $job_on_remhost |
---|
[1] | 1578 | elif [[ $local_host = nech ]] |
---|
| 1579 | then |
---|
| 1580 | if [[ $queue = default ]] |
---|
| 1581 | then |
---|
[799] | 1582 | eval $submcom $job_on_remhost |
---|
[1] | 1583 | else |
---|
[799] | 1584 | eval $submcom -q $queue $job_on_remhost |
---|
[1] | 1585 | fi |
---|
| 1586 | else |
---|
| 1587 | qsub $job_on_remhost |
---|
| 1588 | fi |
---|
[622] | 1589 | |
---|
| 1590 | # Jobfile must not be deleted on lctit/ibmku!! This will be done |
---|
| 1591 | # only at the end of the job. |
---|
[1099] | 1592 | if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]] |
---|
[622] | 1593 | then |
---|
| 1594 | rm $job_on_remhost |
---|
| 1595 | fi |
---|
[1] | 1596 | cd - > /dev/null |
---|
| 1597 | fi |
---|
| 1598 | fi |
---|
| 1599 | |
---|
| 1600 | |
---|
| 1601 | |
---|
| 1602 | # ABSCHLUSSARBEITEN |
---|
| 1603 | |
---|
| 1604 | if [[ $no_submit = false ]] |
---|
| 1605 | then |
---|
[1099] | 1606 | rm -f $job_to_send |
---|
[1] | 1607 | fi |
---|
| 1608 | [[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n" |
---|