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source: palm/trunk/SCRIPTS/subjob @ 109

Last change on this file since 109 was 108, checked in by letzel, 17 years ago

Improved coupler: evaporation - salinity-flux coupling for humidity = .T.,

avoid MPI hangs when coupled runs terminate, add DOC/app/chapter_3.8;

Optional calculation of km and kh from initial TKE e_init;
Default initialization of km,kh = 0.00001 for ocean = .T.;
Allow data_output_pr= q, wq, w"q", w*q* for humidity = .T.;
Bugfix: Rayleigh damping for ocean fixed.

Property svn:keywords set to Rev

File size: 36.4 KB

Rev	Line
[1]	1	#!/bin/ksh
[82]	2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
[66]	3	# $Id: subjob 54 2007-03-08 00:00:02Z raasch $
[1]	4
	5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
	6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
	7	# Host zurueckgeschickt werden sollen
	8
	9
	10	# letzte Aenderung:
	11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
	12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
	13	# 06/02/98 - Siggi - berte validiert
	14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
	15	# moeglich
	16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
	17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
	18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
	19	# allgemeine Anpassungen fuer ibm-Rechner
	20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
	21	# Ruecktransfer des Jobprotokolls fuer diese
	22	# Maschine abgeschaltet
	23	# 31/10/02 - Siggi - berni validiert
	24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
	25	# 08/11/02 - Siggi - quanero validiert
	26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
	27	# 23/01/03 - Siggi - hostname nobel changed to nobela
	28	# 06/02/03 - Siggi - gregale validated
	29	# 12/02/03 - Siggi - orkan and maestro validated
	30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
	31	# 12/03/03 - Siggi - nec at DKRZ validated
	32	# 13/03/03 - Siggi - new nqs resource variable Memory
	33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
	34	# node
	35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
	36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
	37	# cxxl added to ibmh
	38	# 29/08/03 - Siggi - changes in job queues and communication system on
	39	# ibms
	40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
	41	# 30/10/03 - Siggi - nech is not supported any more
	42	# 10/11/03 - Siggi - nech2 renamed to nech
	43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
	44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
	45	# 31/03/04 - Siggi - new option -N for node usage
	46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
	47	# due to error in ssh installation (otherwise a prompt
	48	# for the password appears)
	49	# 23/07/04 - Siggi - changes due to the new berni configuration
	50	# (federation switch)
	51	# 01/09/04 - Gerald new job-classes on hanni
	52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
	53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
	54	# 03/12/04 - Siggi - notification on ibm switched of in case of
	55	# delete_dayfile = true, node usage in cdev set to
	56	# shared
	57	# 16/02/05 - Gerald hababai validated
	58	# 29/03/05 - Micha - new job class channi on hanni
	59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
	60	# on ibms
	61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
	62	# p_normal
	63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
	64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
	65	# "sn_all", new job class cexp
	66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
	67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
	68	# hurricane (with -X0)
	69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
	70	# added
	71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
	72	# 09/02/06 - Siggi - ibmy admitted
	73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
	74	# 13/04/06 - Siggi - ostria admitted
	75	# 18/04/06 - Siggi - new option -O for OpenMP usage
	76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
	77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
	78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
	79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
	80	# 28/11/06 - Siggi - levanto admitted
[5]	81	# 13/02/07 - Siggi - hpmuk releated code removed
[35]	82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
[82]	83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
[102]	84	# 27/07/07 - Siggi - autan admitted
[108]	85	# 03/08/07 - Marcus- lcfimm admitted
[1]	86
	87
	88	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	89	delete_dayfile=false
	90	locat=normal
	91	no_default_queue=none
	92	no_submit=false
	93	job_catalog="~/job_queue"
	94	job_name=none
	95	local_user=$LOGNAME
	96	node_usage=shared
	97	numprocs=1
	98	punkte="..........................................................."
	99	submcom=qsub
	100	queue=default
	101	remote_host=none
	102	remote_user=""
	103	verify=true
	104
	105	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
	106	typeset -i inumprocs nodes=0 tasks_per_node=0 threads_per_task=1
	107	typeset -L20 spalte1
	108	typeset -R40 spalte2
	109	typeset -L60 spalte3
	110
	111
	112
	113	# FEHLERBEHANDLUNG
	114	# BEI EXIT:
	115	trap 'if [[ $locat != normal ]]
	116	then
	117	case $locat in
	118	(option) printf "\n --> available optios can be displayed"
	119	printf " by typing:"
	120	printf "\n \"subjob ?\" \n";;
	121	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	122	(*) printf "\n +++ unknown error"
	123	printf "\n please inform S. Raasch!\n"
	124	esac
	125	[[ -f $job_to_send ]] && rm $job_to_send
	126	printf "\n\n+++ SUBJOB killed \n\n"
	127	fi' exit
	128
	129
	130	# BEI TERMINAL-BREAK:
	131	trap '[[ -f $job_to_send ]] && rm $job_to_send
	132	printf "\n\n+++ SUBJOB killed \n\n"
	133	exit
	134	' 2
	135
	136
	137
	138
	139	# LOKALEN HOSTNAMEN FESTSTELLEN
	140	local_host=$(hostname)
	141
	142
	143
	144	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	145	# UEBERHAUPT ZULAESSIG IST
	146	case $local_host in
	147	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	148	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	149	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[1]	150	(breg-en0\|berni-en0) local_addres=130.73.230.10; local_host=ibmb;;
[12]	151	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[108]	152	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
[1]	153	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	154	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[108]	155	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
[101]	156	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[35]	157	(gate\|n-sx) local_addres=133.5.178.11; local_host=neck;;
[1]	158	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
	159	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
[5]	160	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	161	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[1]	162	(hreg-en0\|hanni-en0) local_addres=130.75.4.10; local_host=ibmh;;
[5]	163	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
	164	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
	165	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[1]	166	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	167	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	168	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
	169	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[1]	170	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
	171	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
	172	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
	173	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
	174	(*) printf "\n +++ \"$local_host\" unknown";
	175	printf "\n please inform S. Raasch!";
	176	locat=parameter; exit;;
	177	esac
	178
	179
	180
	181	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	182	remote_host=$local_host
	183
	184
	185
	186
	187	# PROZEDUROPTIONEN EINLESEN
[82]	188	while getopts :c:dDh:m:n:N:O:q:t:T:u:vX: option
[1]	189	do
	190	case $option in
	191	(c) job_catalog=$OPTARG;;
	192	(d) delete_dayfile=true;;
	193	(D) no_submit=true;;
	194	(h) remote_host=$OPTARG;;
	195	(m) memory=$OPTARG;;
	196	(n) job_name=$OPTARG;;
	197	(N) node_usage=$OPTARG;;
	198	(O) threads_per_task=$OPTARG;;
	199	(q) no_default_queue=$OPTARG;;
	200	(t) cputime=$OPTARG;;
	201	(T) tasks_per_node=$OPTARG;;
	202	(u) remote_user=$OPTARG;;
	203	(v) verify=false;;
	204	(X) numprocs=$OPTARG;;
	205	(\?) printf "\n +++ Option $OPTARG unknown \n";
	206	locat=option; exit;;
	207	esac
	208	done
	209
	210
	211	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	212	shift OPTIND-1; file_to_send=$1
	213
	214
	215	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	216	if [ "$1" = "?" ]
	217	then
	218	(printf "\n *** subjob can be called as follows:\n"
	219	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	220	printf "\n Description of available options:\n"
	221	printf "\n Option Description Default-Value"
	222	printf "\n -c job-input- and output-catalog ~/job_queue"
	223	printf "\n -d no job-protocol will be created ---"
	224	printf "\n -D only the job-file will be created ---"
	225	printf "\n -h execution host, available hosts: $remote_host"
[5]	226	printf "\n ibm, ibmb, ibmh, ibms, ibmy, lcmuk,"
[35]	227	printf "\n lctit, nech, neck, unics"
[1]	228	printf "\n -m memory demand per process in MByte ---"
	229	printf "\n -n jobname <jobdatei>"
	230	printf "\n -O threads per task (for OpenMP usage) 1"
	231	printf "\n -q job-queue to be used default"
	232	printf "\n -t allowed cpu-time in seconds ---"
	233	printf "\n -T tasks per node (on parallel hosts) ---"
	234	printf "\n -u username on execution host from .netrc"
	235	printf "\n -v no prompt for confirmation ---"
	236	printf "\n -X # of processors (on parallel hosts) 1"
	237	printf "\n "
	238	printf "\n The only possible positional parameter is <jobfile>:"
	239	printf "\n The complete NQS-job must be provided here."
	240	printf "\n <jobfile>=? creates this outline\n\n") \| more
	241	exit
	242	fi
	243
	244
	245
	246	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	247	if [[ "$file_to_send" = "" ]]
	248	then
	249	printf "\n +++ job-file missing"
	250	locat=parameter; exit
	251	else
	252	if [[ -f $file_to_send ]]
	253	then
	254	true
	255	else
	256	printf "\n +++ job-file: "
	257	printf "\n $file_to_send"
	258	printf "\n does not exist"
	259	locat=parameter; exit
	260	fi
	261	fi
	262
	263
	264
	265	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	266	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	267	if [[ $job_name = none ]]
	268	then
	269	job_name=$file_to_send
	270	fi
	271	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	272	then
	273	printf "\n +++ job-file name: "
	274	printf "\n $job_name"
	275	printf "\n must not contain \"/\"-characters"
	276	locat=parameter; exit
	277	fi
	278
	279
	280
	281
	282	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	283	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	284	if [[ $remote_host = none ]]
	285	then
	286	printf "\n +++ host missing"
	287	locat=option; exit
	288	else
	289	case $remote_host in
	290	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	291	(ibmb) queue=cpar; remote_addres=130.73.230.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	292	(ibmh) queue=cpar; remote_addres=130.75.4.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	293	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	294	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[108]	295	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
[69]	296	(lctit) queue=default; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
[1]	297	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
[35]	298	(neck) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=133.5.178.11; submcom="/usr/bin/nqsII/qsub";;
[1]	299	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	300	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	301	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	302	locat=parameter; exit;;
	303	esac
	304	fi
	305
	306
	307	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	308	if [[ $no_default_queue != none ]]
	309	then
	310	error=false
	311	ndq=$no_default_queue
	312	case $remote_host in
	313	(ibm) case $ndq in
	314	(p690_express\|p690_standard\|p690_long) error=false;;
	315	(*) error=true;;
	316	esac;;
	317	(ibmb) case $ndq in
	318	(cdata\|cdev\|cexp\|c1\|cshare\|csolo\|cspec) error=false;;
	319	(*) error=true;;
	320	esac;;
	321	(ibmh) case $ndq in
	322	(cdata\|cdev\|cexp\|channi\|cxxl\|c1\|cshare\|csolo\|cspec) error=false;;
	323	(*) error=true;;
	324	esac;;
	325	(ibms) case $ndq in
	326	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	327	(*) error=true;;
	328	esac;;
	329	(ibmy) case $ndq in
	330	(parallel) error=false;;
	331	(*) error=true;;
	332	esac;;
	333	(lctit) case $ndq in
[69]	334	(default\|high\|bes1\|bes2\|sla1\|sla2) error=false;;
[1]	335	(*) error=true;;
	336	esac;;
	337	(t3eb) case $ndq in
	338	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	339	(*) error=true;;
	340	esac;;
	341	(t3eh) case $ndq in
	342	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	343	(*) error=true;;
	344	esac;;
	345	(t3ej2\|t3ej5) case $ndq in
	346	(low\|normal\|high) error=false;;
	347	(*) error=true;;
	348	esac;;
	349	(t3es) case $ndq in
	350	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	351	(*) error=true;;
	352	esac;;
	353	(unics) case $ndq in
	354	(unics\|ht) error=false;;
	355	(*) error=true;;
	356	esac;;
	357	esac
	358	if [[ $error = true ]]
	359	then
	360	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	361	locat=parameter; exit
	362	else
	363	queue=$no_default_queue
	364	fi
	365	fi
	366
	367
	368
	369	# KNOTENNUTZUNG IN ENTWICKLERQUEUE MUSS SHARED SEIN
	370	if [[ $node_usage != shared && $queue = cdev ]]
	371	then
	372	node_usage=shared
	373	fi
	374
	375
	376
	377	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	378	# AUFTEILEN
	379	done=false
	380	while [[ $done = false ]]
	381	do
	382	if (( $cputime <= 0 ))
	383	then
	384	printf "\n +++ wrong cpu-time or cpu-time missing"
	385	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	386	printf "\n >>> "
	387	read cputime 1>/dev/null 2>&1
	388	else
	389	done=true
	390	fi
	391	done
	392	if [[ $remote_host = nech ]]
	393	then
	394	if (( tasks_per_node != 0 ))
	395	then
	396	(( cputime = cputime * tasks_per_node ))
	397	elif [[ $numprocs != 0 ]]
	398	then
	399	(( cputime = cputime * numprocs ))
	400	fi
	401	fi
	402	(( stunden = cputime / 3600 ))
	403	(( resttime = cputime - stunden * 3600 ))
	404	(( minuten = resttime / 60 ))
	405	(( sekunden = resttime - minuten * 60 ))
	406	timestring=${stunden}:${minuten}:${sekunden}
	407
	408
	409
	410	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	411	done=false
	412	while [[ $done = false ]]
	413	do
	414	if (( memory <= 0 ))
	415	then
	416	printf "\n +++ wrong memory demand or memory demand missing"
	417	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	418	printf "\n >>> "
	419	read memory 1>/dev/null 2>&1
	420	else
	421	done=true
	422	fi
	423	done
	424
[35]	425	if [[ $remote_host = nech \|\| $remote_host = neck ]]
[1]	426	then
	427	if (( tasks_per_node != 0 ))
	428	then
	429	(( Memory = memory * tasks_per_node / 1000 ))
	430	elif [[ $numprocs != 0 ]]
	431	then
	432	(( Memory = memory * numprocs / 1000 ))
	433	else
	434	(( Memory = memory / 1000 ))
	435	fi
	436	fi
	437
	438
	439	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	440	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	441	then
	442	(( memory = memory * threads_per_task ))
	443	fi
	444
	445
	446	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	447	if (( tasks_per_node != 0 ))
	448	then
	449	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	450	fi
	451
	452
	453
	454	# HEADER-AUSGABE
	455	if [[ $verify = true ]]
	456	then
	457	printf "\n\n"
	458	printf "#--------------------------------------------------------------# \n"
	459	spalte1=SUBJOB;spalte2=$(date)
	460	printf "\| $spalte1$spalte2 \| \n"
	461	printf "\| \| \n"
	462	printf "\| values of parameters/options: \| \n"
	463	spalte1=local_host$punkte; spalte2=$punkte$local_host
	464	printf "\| $spalte1$spalte2 \| \n"
	465	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	466	printf "\| $spalte1$spalte2 \| \n"
	467	spalte1=queue$punkte; spalte2=$punkte$queue
	468	printf "\| $spalte1$spalte2 \| \n"
	469	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	470	printf "\| $spalte1$spalte2 \| \n"
	471	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	472	printf "\| $spalte1$spalte2 \| \n"
	473	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	474	printf "\| $spalte1$spalte2 \| \n"
	475	printf "#--------------------------------------------------------------# \n\n"
	476
	477
	478	# KONTROLLABFRAGE, OB ALLES O.K.
	479	antwort="dummy"
	480	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	481	do
	482	read antwort?" >>> continue (y/n) ? "
	483	done
	484	if [[ $antwort = n \|\| $antwort = N ]]
	485	then
	486	locat=verify; exit
	487	fi
	488	printf "\n"
	489	fi
	490
	491
	492
	493	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	494	kennung=$RANDOM
	495	job_on_remhost=${job_name}_${kennung}_$local_host
	496	job_to_send=job_to_send_$kennung
	497	if [[ $delete_dayfile = false ]]
	498	then
	499	remote_dayfile=${local_host}_${job_name}_result_$kennung
	500	local_dayfile=${remote_host}_${job_name}
	501	else
	502	remote_dayfile=/dev/null
	503	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	504	then
	505	notification='# @ notification = never'
	506	fi
	507	fi
	508
	509
	510
	511	# QSUB- ODER LL-KOMMANDOS BZW. SKRIPTE GENERIEREN
	512	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	513	then
	514
	515	if [[ $remote_host = ibmy ]]
	516	then
	517	consumable_memory=""
	518	else
	519	consumable_memory="ConsumableMemory($memory mb)"
	520	fi
	521	if [[ $queue = cdev ]]
	522	then
	523	data_limit="# @ data_limit = 1.76gb"
	524	network_to_use="# @ network.mpi = sn_all,shared,ip"
	525	else
	526	if [[ $remote_host = ibms ]]
	527	then
	528	network_to_use="# @ network.mpi = csss,shared,us"
	529	elif [[ $remote_host = ibmy ]]
	530	then
	531	network_to_use=""
	532	else
	533	network_to_use="# @ network.mpi = sn_all,shared,us"
	534	data_limit="# @ data_limit = 1.76gb"
	535	fi
	536	fi
	537
	538	cat > $job_to_send << %%END%%
	539	#!/bin/ksh
	540
	541	# @ job_type = parallel
	542	# @ job_name = palm
	543	# @ wall_clock_limit = ${timestring},$timestring
	544	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	545	# @ output = $remote_dayfile
	546	# @ error = $remote_dayfile
	547	# @ image_size = 50
	548	# @ class = $queue
	549	# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes
	550	$network_to_use
	551	$data_limit
	552	$notification
	553
	554	%%END%%
	555
	556	if (( nodes > 0 ))
	557	then
	558
	559	cat >> $job_to_send << %%END%%
	560	# @ node = $nodes
	561	# @ tasks_per_node = $tasks_per_node
	562	# @ node_usage = $node_usage
	563	# @ queue
	564
	565	%%END%%
	566
	567	else
	568
	569	if [[ $remote_host != ibmy ]]
	570	then
	571
	572	cat >> $job_to_send << %%END%%
	573	# @ blocking = unlimited
	574	# @ total_tasks = $numprocs
	575	# @ node_usage = $node_usage
	576	# @ queue
	577
	578	%%END%%
	579
	580	else
	581
	582	cat >> $job_to_send << %%END%%
	583	# @ node = 1
	584	# @ total_tasks = $numprocs
	585	# @ queue
	586
	587	%%END%%
	588
	589	fi
	590
	591	fi
	592
	593	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	594	then
	595
	596	cat > $job_to_send << %%END%%
	597	#!/bin/ksh
	598
	599	# @ job_type = serial
	600	# @ node_usage = $node_usage
	601	# @ job_name = palm
	602	# @ wall_clock_limit = ${timestring},$timestring
	603	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	604	# @ output = $remote_dayfile
	605	# @ error = $remote_dayfile
	606	# @ class = $queue
	607	$notification
	608
	609	# @ queue
	610
	611	%%END%%
	612
[108]	613	elif [[ $remote_host = lcfimm ]]
	614	then
	615
	616	if [[ $numprocs != 0 ]]
	617	then
	618	cat > $job_to_send << %%END%%
	619	#!/bin/ksh
	620	#PBS -N $job_name
	621	#PBS -A nersc
	622	#PBS -l walltime=$timestring
	623	#PBS -l nodes=${nodes}:ppn=$tasks_per_node
	624	#PBS -l pmem=${memory}mb
	625	#PBS -m abe
	626	#PBS -M igore@nersc.no
	627	#PBS -o $remote_dayfile
	628	#PBS -j oe
	629	mpd &
	630
	631	%%END%%
	632
	633	else
	634	cat > $job_to_send << %%END%%
	635	#!/bin/ksh
	636	#PBS -N $job_name
	637	#PBS -A nersc
	638	#PBS -l walltime=$timestring
	639	#PBS -l ncpus=1
	640	#PBS -l pmem=${memory}mb
	641	#PBS -m abe
	642	#PBS -M igore@nersc.no
	643	#PBS -o $remote_dayfile
	644	#PBS -j oe
	645
	646	%%END%%
	647
	648	fi
	649
[1]	650	elif [[ $remote_host = nech ]]
	651	then
	652
	653	if (( nodes > 1 ))
	654	then
	655	cat > $job_to_send << %%END%%
	656	#!/bin/ksh
	657	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	658	#PBS -l ${qsubmem}=${Memory}gb
	659	#PBS -b $nodes
	660	#PBS -o $remote_dayfile
	661	#PBS -N palm
	662	#PBS -j o
	663	#PBS -T mpisx
	664
	665	%%END%%
	666
	667	elif [[ $numprocs != 0 ]]
	668	then
	669	cat > $job_to_send << %%END%%
	670	#!/bin/ksh
	671	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	672	#PBS -l ${qsubmem}=${Memory}gb
	673	#PBS -o $remote_dayfile
	674	#PBS -N palm
	675	#PBS -j o
	676
	677	%%END%%
	678
	679	else
	680	cat > $job_to_send << %%END%%
	681	#!/bin/ksh
	682	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	683	#PBS -o $remote_dayfile
	684	#PBS -j o
	685
	686	%%END%%
	687
	688	fi
	689
[35]	690	elif [[ $remote_host = neck ]]
	691	then
	692
	693	if (( nodes > 1 ))
	694	then
	695	cat > $job_to_send << %%END%%
	696	#!/bin/ksh
	697	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	698	#PBS -l ${qsubmem}=${Memory}gb
	699	#PBS -b $nodes
	700	#PBS -o $remote_dayfile
	701	#PBS -N palm
	702	#PBS -j o
	703	#PBS -T mpisx
	704
	705	%%END%%
	706
	707	elif [[ $numprocs != 0 ]]
	708	then
	709	cat > $job_to_send << %%END%%
	710	#!/bin/ksh
	711	#PBS -q ${queue}
	712	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	713	#PBS -l ${qsubmem}=${Memory}gb
	714	#PBS -o $remote_dayfile
	715	#PBS -N palm
	716	#PBS -j o
	717	#PBS -T mpisx
	718
	719	%%END%%
	720
	721	else
	722	cat > $job_to_send << %%END%%
	723	#!/bin/ksh
	724	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	725	#PBS -o $remote_dayfile
	726	#PBS -j o
	727
	728	%%END%%
	729
	730	fi
	731
[1]	732	elif [[ $remote_host = lctit ]]
	733	then
	734	cat > $job_to_send << %%END%%
	735	#!/bin/bash
	736	#$ -S /bin/bash
	737	cd $job_catalog
[69]	738	export PATH=$PALM_BIN:\$PATH
	739	echo \$PATH
[1]	740
	741	%%END%%
	742
	743	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
	744	submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
	745
	746	else
	747
	748	cat > $job_to_send << %%END%%
	749	# @\$-q ${queue}
	750	# @\$-l${qsubtime} $timestring
	751	# @\$-l${qsubmem} ${memory}mb
	752	# @\$-o $remote_dayfile
	753	# @\$-eo
	754
	755	%%END%%
	756
	757	fi
	758
	759
	760	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	761	# BEI EXIT VERANLASSEN
	762	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	763	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	764	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	765	then
	766	echo "set +vx" >> $job_to_send
	767	echo "trap '" >> $job_to_send
	768	echo "set +vx" >> $job_to_send
[35]	769	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
[1]	770	then
	771	if [[ $remote_host = ibmb \|\| $remote_host = ibmh ]]
	772	then
	773	return_queue=c1
	774	elif [[ $remote_host = ibms ]]
	775	then
	776	return_queue=p_normal
	777	elif [[ $remote_host = ibmy ]]
	778	then
	779	return_queue=serial
	780	elif [[ $remote_host = lctit ]]
	781	then
	782	return_queue=default
[35]	783	elif [[ $remote_host = neck ]]
[1]	784	then
[35]	785	return_queue=S
[1]	786	else
	787	return_queue=unknown
	788	fi
	789
	790	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	791	then
	792
	793	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	794	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	795	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	796	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	797	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	798	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	799	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	800	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	801	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	802	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	803
	804	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	805	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	806
	807	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
	808	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
	809	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	810
	811	elif [[ $remote_host = nech ]]
	812	then
	813	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	814	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	815	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	816	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	817	echo "#PBS -j o" >> $job_to_send
	818	echo " " >> $job_to_send
	819	echo "set -x" >> $job_to_send
	820	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	821	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	822	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	823	echo "%%END%%" >> $job_to_send
	824
[35]	825	elif [[ $remote_host = neck ]]
	826	then
	827	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	828	echo "#PBS -q $return_queue" >> $job_to_send
	829	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	830	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	831	echo "#PBS -j o" >> $job_to_send
	832	echo " " >> $job_to_send
	833	echo "set -x" >> $job_to_send
	834	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	835	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	836	echo "%%END%%" >> $job_to_send
	837
[1]	838	elif [[ $remote_host = lctit ]]
	839	then
	840	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	841	echo "set -x" >> $job_to_send
	842	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
	843	echo "cd $job_catalog" >> $job_to_send
	844	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	845	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	846	echo "%%END%%" >> $job_to_send
	847
	848	else
	849
	850	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	851	echo "# @\\\$-q $return_queue" >> $job_to_send
	852	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	853	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	854	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	855	then
	856	echo "# @\$-l mpp_p=0" >> $job_to_send
	857	fi
	858	echo '# @\$-lF 10mb' >> $job_to_send
	859	# echo '# @\$-o /dev/null' >> $job_to_send
	860	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	861	echo '# @\\\$-eo' >> $job_to_send
	862	echo " " >> $job_to_send
	863	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	864	then
	865	echo "set +vx" >> $job_to_send
	866	echo ". .profile" >> $job_to_send
	867	fi
	868	echo "set -x" >> $job_to_send
	869	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
	870	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	871	echo "%%END%%" >> $job_to_send
	872	fi
	873
	874	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	875	then
	876	echo "llsubmit scpjob.$kennung" >> $job_to_send
	877	elif [[ $remote_host = lctit ]]
	878	then
	879	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	880	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
	881	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
	882	echo "sleep 10" >> $job_to_send
	883	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	884	then
	885	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	886	elif [[ $remote_host = t3es ]]
	887	then
	888	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
	889	else
	890	echo "qsub scpjob.$kennung" >> $job_to_send
	891	fi
	892	echo "rm scpjob.$kennung" >> $job_to_send
	893	if [[ $remote_host = nech ]]
	894	then
	895	echo "cd -" >> $job_to_send
	896	fi
	897	else
	898	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	899	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	900	fi
	901	echo "set -x" >> $job_to_send
	902	echo " ' exit" >> $job_to_send
	903	echo "set -x" >> $job_to_send
	904	fi
	905
	906
	907
	908	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	909	cat $file_to_send >> $job_to_send
[69]	910
[1]	911	if [[ $remote_host = ibm ]]
	912	then
	913	echo " " >> $job_to_send
	914	echo "exit" >> $job_to_send
	915	fi
[69]	916	if [[ $remote_host = lctit ]]
	917	then
	918	echo " " >> $job_to_send
	919	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	920	fi
[1]	921
	922
	923
	924	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	925	if [[ -z $remote_user ]]
	926	then
	927	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	928	then
	929	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	930	fi
	931	fi
	932
	933
	934
	935	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	936	if [[ $no_submit = false ]]
	937	then
	938	if [[ $remote_host != $local_host ]]
	939	then
	940	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	941	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	942	then
[82]	943	job_catalog_save=$job_catalog
	944	job_catalog=job_queue
	945	elif [[ $remote_host = nech ]]
	946	then
	947	job_catalog_save=$job_catalog
	948	job_catalog=/hpf/b/${remote_user}/job_queue
	949	fi
	950	if [[ $local_host = decalpha ]]
	951	then
	952	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
	953	# PASSWORT AB
	954	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
	955	elif [[ $remote_host = nech ]]
	956	then
	957	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	958	# TRANSFERIERT WERDEN
	959	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	960	else
[82]	961	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	962	fi
[82]	963	if [[ $? = 1 ]]
	964	then
	965	locat=scp; exit
	966	fi
	967	if [[ $remote_host = ibms ]]
	968	then
	969	job_catalog=$job_catalog_save
	970	fi
[1]	971	[[ $verify = true ]] && printf "\n >>> finished\n"
	972	else
	973	eval job_catalog=$job_catalog
	974	cp $job_to_send ${job_catalog}/$job_on_remhost
	975	fi
	976
	977
	978
	979	# NQS- BZW. LOADLEVELER-JOB STARTEN
	980	if [[ $remote_host != $local_host ]]
	981	then
	982	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[82]	983	if [[ $remote_host != lctit ]]
[1]	984	then
[82]	985	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[1]	986	else
[82]	987	# TIT ERLAUBT NUR DIE AUSFÜHRUNG GANZ BESTIMMTER KOMMANDOS
	988	# MIT SSH, DESHALB AUFRUF PER PIPE
	989	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
	990	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	991	echo "first try" > send_protocol
	992	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
	993	do
	994	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
	995	then
	996	printf "\n trying to submit job to TIT cluster..."
	997	else
	998	printf "\n +++ failed ... trying to submit again ..."
	999	fi
	1000	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
	1001	cat send_protocol
	1002	done
	1003	sleep 10
	1004	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	1005	echo "$submcom $job_on_remhost"
	1006	rm send_protocol
	1007	fi
[1]	1008
	1009	[[ $verify = true ]] && printf " >>> o.k.\n"
	1010	else
	1011	cd $job_catalog
	1012	if [[ $(echo $local_host \| cut -c1-3) = ibm ]]
	1013	then
	1014	eval $submcom $job_on_remhost
[108]	1015	elif [[ $local_host = lcfimm ]]
	1016	then
	1017	eval $submcom $job_on_remhost
	1018	echo "$submcom $job_on_remhost"
	1019	chmod u+x $job_on_remhost
[1]	1020	elif [[ $local_host = lctit ]]
	1021	then
	1022	eval $submcom $job_on_remhost
	1023	echo "$submcom $job_on_remhost"
	1024	chmod u+x $job_on_remhost
	1025	elif [[ $local_host = nech ]]
	1026	then
	1027	if [[ $queue = default ]]
	1028	then
	1029	eval $submcom $job_on_remhost
	1030	else
	1031	eval $submcom -q $queue $job_on_remhost
	1032	fi
	1033	else
	1034	qsub $job_on_remhost
	1035	fi
[69]	1036	# JOBFILE DARF AUF LCTIT NICHT GELOESCHT WERDEN!! GESCHIEHT ERST AM JOBENDE
	1037	[[ $local_host != lctit ]] && rm $job_on_remhost
[1]	1038	cd - > /dev/null
	1039	fi
	1040	fi
	1041
	1042
	1043
	1044	# ABSCHLUSSARBEITEN
	1045
	1046	if [[ $no_submit = false ]]
	1047	then
	1048	rm $job_to_send
	1049	fi
	1050	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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