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source: palm/trunk/SCRIPTS/subjob @ 107

Last change on this file since 107 was 102, checked in by raasch, 17 years ago
preliminary version for coupled runs
Property svn:keywords set to `Rev`
File size: 35.4 KB

Rev	Line
[1]	1	#!/bin/ksh
[82]	2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
[66]	3	# $Id: subjob 54 2007-03-08 00:00:02Z raasch $
[1]	4
	5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
	6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
	7	# Host zurueckgeschickt werden sollen
	8
	9
	10	# letzte Aenderung:
	11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
	12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
	13	# 06/02/98 - Siggi - berte validiert
	14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
	15	# moeglich
	16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
	17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
	18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
	19	# allgemeine Anpassungen fuer ibm-Rechner
	20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
	21	# Ruecktransfer des Jobprotokolls fuer diese
	22	# Maschine abgeschaltet
	23	# 31/10/02 - Siggi - berni validiert
	24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
	25	# 08/11/02 - Siggi - quanero validiert
	26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
	27	# 23/01/03 - Siggi - hostname nobel changed to nobela
	28	# 06/02/03 - Siggi - gregale validated
	29	# 12/02/03 - Siggi - orkan and maestro validated
	30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
	31	# 12/03/03 - Siggi - nec at DKRZ validated
	32	# 13/03/03 - Siggi - new nqs resource variable Memory
	33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
	34	# node
	35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
	36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
	37	# cxxl added to ibmh
	38	# 29/08/03 - Siggi - changes in job queues and communication system on
	39	# ibms
	40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
	41	# 30/10/03 - Siggi - nech is not supported any more
	42	# 10/11/03 - Siggi - nech2 renamed to nech
	43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
	44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
	45	# 31/03/04 - Siggi - new option -N for node usage
	46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
	47	# due to error in ssh installation (otherwise a prompt
	48	# for the password appears)
	49	# 23/07/04 - Siggi - changes due to the new berni configuration
	50	# (federation switch)
	51	# 01/09/04 - Gerald new job-classes on hanni
	52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
	53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
	54	# 03/12/04 - Siggi - notification on ibm switched of in case of
	55	# delete_dayfile = true, node usage in cdev set to
	56	# shared
	57	# 16/02/05 - Gerald hababai validated
	58	# 29/03/05 - Micha - new job class channi on hanni
	59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
	60	# on ibms
	61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
	62	# p_normal
	63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
	64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
	65	# "sn_all", new job class cexp
	66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
	67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
	68	# hurricane (with -X0)
	69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
	70	# added
	71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
	72	# 09/02/06 - Siggi - ibmy admitted
	73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
	74	# 13/04/06 - Siggi - ostria admitted
	75	# 18/04/06 - Siggi - new option -O for OpenMP usage
	76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
	77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
	78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
	79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
	80	# 28/11/06 - Siggi - levanto admitted
[5]	81	# 13/02/07 - Siggi - hpmuk releated code removed
[35]	82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
[82]	83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
[102]	84	# 27/07/07 - Siggi - autan admitted
[1]	85
	86
	87	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	88	delete_dayfile=false
	89	locat=normal
	90	no_default_queue=none
	91	no_submit=false
	92	job_catalog="~/job_queue"
	93	job_name=none
	94	local_user=$LOGNAME
	95	node_usage=shared
	96	numprocs=1
	97	punkte="..........................................................."
	98	submcom=qsub
	99	queue=default
	100	remote_host=none
	101	remote_user=""
	102	verify=true
	103
	104	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
	105	typeset -i inumprocs nodes=0 tasks_per_node=0 threads_per_task=1
	106	typeset -L20 spalte1
	107	typeset -R40 spalte2
	108	typeset -L60 spalte3
	109
	110
	111
	112	# FEHLERBEHANDLUNG
	113	# BEI EXIT:
	114	trap 'if [[ $locat != normal ]]
	115	then
	116	case $locat in
	117	(option) printf "\n --> available optios can be displayed"
	118	printf " by typing:"
	119	printf "\n \"subjob ?\" \n";;
	120	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	121	(*) printf "\n +++ unknown error"
	122	printf "\n please inform S. Raasch!\n"
	123	esac
	124	[[ -f $job_to_send ]] && rm $job_to_send
	125	printf "\n\n+++ SUBJOB killed \n\n"
	126	fi' exit
	127
	128
	129	# BEI TERMINAL-BREAK:
	130	trap '[[ -f $job_to_send ]] && rm $job_to_send
	131	printf "\n\n+++ SUBJOB killed \n\n"
	132	exit
	133	' 2
	134
	135
	136
	137
	138	# LOKALEN HOSTNAMEN FESTSTELLEN
	139	local_host=$(hostname)
	140
	141
	142
	143	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	144	# UEBERHAUPT ZULAESSIG IST
	145	case $local_host in
	146	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	147	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	148	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[1]	149	(breg-en0\|berni-en0) local_addres=130.73.230.10; local_host=ibmb;;
[12]	150	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[1]	151	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	152	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[101]	153	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[35]	154	(gate\|n-sx) local_addres=133.5.178.11; local_host=neck;;
[1]	155	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
	156	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
[5]	157	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	158	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[1]	159	(hreg-en0\|hanni-en0) local_addres=130.75.4.10; local_host=ibmh;;
[5]	160	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
	161	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
	162	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[1]	163	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	164	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	165	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
	166	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[1]	167	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
	168	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
	169	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
	170	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
	171	(*) printf "\n +++ \"$local_host\" unknown";
	172	printf "\n please inform S. Raasch!";
	173	locat=parameter; exit;;
	174	esac
	175
	176
	177
	178	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	179	remote_host=$local_host
	180
	181
	182
	183
	184	# PROZEDUROPTIONEN EINLESEN
[82]	185	while getopts :c:dDh:m:n:N:O:q:t:T:u:vX: option
[1]	186	do
	187	case $option in
	188	(c) job_catalog=$OPTARG;;
	189	(d) delete_dayfile=true;;
	190	(D) no_submit=true;;
	191	(h) remote_host=$OPTARG;;
	192	(m) memory=$OPTARG;;
	193	(n) job_name=$OPTARG;;
	194	(N) node_usage=$OPTARG;;
	195	(O) threads_per_task=$OPTARG;;
	196	(q) no_default_queue=$OPTARG;;
	197	(t) cputime=$OPTARG;;
	198	(T) tasks_per_node=$OPTARG;;
	199	(u) remote_user=$OPTARG;;
	200	(v) verify=false;;
	201	(X) numprocs=$OPTARG;;
	202	(\?) printf "\n +++ Option $OPTARG unknown \n";
	203	locat=option; exit;;
	204	esac
	205	done
	206
	207
	208	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	209	shift OPTIND-1; file_to_send=$1
	210
	211
	212	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	213	if [ "$1" = "?" ]
	214	then
	215	(printf "\n *** subjob can be called as follows:\n"
	216	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	217	printf "\n Description of available options:\n"
	218	printf "\n Option Description Default-Value"
	219	printf "\n -c job-input- and output-catalog ~/job_queue"
	220	printf "\n -d no job-protocol will be created ---"
	221	printf "\n -D only the job-file will be created ---"
	222	printf "\n -h execution host, available hosts: $remote_host"
[5]	223	printf "\n ibm, ibmb, ibmh, ibms, ibmy, lcmuk,"
[35]	224	printf "\n lctit, nech, neck, unics"
[1]	225	printf "\n -m memory demand per process in MByte ---"
	226	printf "\n -n jobname <jobdatei>"
	227	printf "\n -O threads per task (for OpenMP usage) 1"
	228	printf "\n -q job-queue to be used default"
	229	printf "\n -t allowed cpu-time in seconds ---"
	230	printf "\n -T tasks per node (on parallel hosts) ---"
	231	printf "\n -u username on execution host from .netrc"
	232	printf "\n -v no prompt for confirmation ---"
	233	printf "\n -X # of processors (on parallel hosts) 1"
	234	printf "\n "
	235	printf "\n The only possible positional parameter is <jobfile>:"
	236	printf "\n The complete NQS-job must be provided here."
	237	printf "\n <jobfile>=? creates this outline\n\n") \| more
	238	exit
	239	fi
	240
	241
	242
	243	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	244	if [[ "$file_to_send" = "" ]]
	245	then
	246	printf "\n +++ job-file missing"
	247	locat=parameter; exit
	248	else
	249	if [[ -f $file_to_send ]]
	250	then
	251	true
	252	else
	253	printf "\n +++ job-file: "
	254	printf "\n $file_to_send"
	255	printf "\n does not exist"
	256	locat=parameter; exit
	257	fi
	258	fi
	259
	260
	261
	262	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	263	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	264	if [[ $job_name = none ]]
	265	then
	266	job_name=$file_to_send
	267	fi
	268	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	269	then
	270	printf "\n +++ job-file name: "
	271	printf "\n $job_name"
	272	printf "\n must not contain \"/\"-characters"
	273	locat=parameter; exit
	274	fi
	275
	276
	277
	278
	279	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	280	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	281	if [[ $remote_host = none ]]
	282	then
	283	printf "\n +++ host missing"
	284	locat=option; exit
	285	else
	286	case $remote_host in
	287	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	288	(ibmb) queue=cpar; remote_addres=130.73.230.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	289	(ibmh) queue=cpar; remote_addres=130.75.4.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	290	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	291	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[69]	292	(lctit) queue=default; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
[1]	293	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
[35]	294	(neck) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=133.5.178.11; submcom="/usr/bin/nqsII/qsub";;
[1]	295	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	296	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	297	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	298	locat=parameter; exit;;
	299	esac
	300	fi
	301
	302
	303	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	304	if [[ $no_default_queue != none ]]
	305	then
	306	error=false
	307	ndq=$no_default_queue
	308	case $remote_host in
	309	(ibm) case $ndq in
	310	(p690_express\|p690_standard\|p690_long) error=false;;
	311	(*) error=true;;
	312	esac;;
	313	(ibmb) case $ndq in
	314	(cdata\|cdev\|cexp\|c1\|cshare\|csolo\|cspec) error=false;;
	315	(*) error=true;;
	316	esac;;
	317	(ibmh) case $ndq in
	318	(cdata\|cdev\|cexp\|channi\|cxxl\|c1\|cshare\|csolo\|cspec) error=false;;
	319	(*) error=true;;
	320	esac;;
	321	(ibms) case $ndq in
	322	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	323	(*) error=true;;
	324	esac;;
	325	(ibmy) case $ndq in
	326	(parallel) error=false;;
	327	(*) error=true;;
	328	esac;;
	329	(lctit) case $ndq in
[69]	330	(default\|high\|bes1\|bes2\|sla1\|sla2) error=false;;
[1]	331	(*) error=true;;
	332	esac;;
	333	(t3eb) case $ndq in
	334	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	335	(*) error=true;;
	336	esac;;
	337	(t3eh) case $ndq in
	338	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	339	(*) error=true;;
	340	esac;;
	341	(t3ej2\|t3ej5) case $ndq in
	342	(low\|normal\|high) error=false;;
	343	(*) error=true;;
	344	esac;;
	345	(t3es) case $ndq in
	346	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	347	(*) error=true;;
	348	esac;;
	349	(unics) case $ndq in
	350	(unics\|ht) error=false;;
	351	(*) error=true;;
	352	esac;;
	353	esac
	354	if [[ $error = true ]]
	355	then
	356	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	357	locat=parameter; exit
	358	else
	359	queue=$no_default_queue
	360	fi
	361	fi
	362
	363
	364
	365	# KNOTENNUTZUNG IN ENTWICKLERQUEUE MUSS SHARED SEIN
	366	if [[ $node_usage != shared && $queue = cdev ]]
	367	then
	368	node_usage=shared
	369	fi
	370
	371
	372
	373	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	374	# AUFTEILEN
	375	done=false
	376	while [[ $done = false ]]
	377	do
	378	if (( $cputime <= 0 ))
	379	then
	380	printf "\n +++ wrong cpu-time or cpu-time missing"
	381	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	382	printf "\n >>> "
	383	read cputime 1>/dev/null 2>&1
	384	else
	385	done=true
	386	fi
	387	done
	388	if [[ $remote_host = nech ]]
	389	then
	390	if (( tasks_per_node != 0 ))
	391	then
	392	(( cputime = cputime * tasks_per_node ))
	393	elif [[ $numprocs != 0 ]]
	394	then
	395	(( cputime = cputime * numprocs ))
	396	fi
	397	fi
	398	(( stunden = cputime / 3600 ))
	399	(( resttime = cputime - stunden * 3600 ))
	400	(( minuten = resttime / 60 ))
	401	(( sekunden = resttime - minuten * 60 ))
	402	timestring=${stunden}:${minuten}:${sekunden}
	403
	404
	405
	406	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	407	done=false
	408	while [[ $done = false ]]
	409	do
	410	if (( memory <= 0 ))
	411	then
	412	printf "\n +++ wrong memory demand or memory demand missing"
	413	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	414	printf "\n >>> "
	415	read memory 1>/dev/null 2>&1
	416	else
	417	done=true
	418	fi
	419	done
	420
[35]	421	if [[ $remote_host = nech \|\| $remote_host = neck ]]
[1]	422	then
	423	if (( tasks_per_node != 0 ))
	424	then
	425	(( Memory = memory * tasks_per_node / 1000 ))
	426	elif [[ $numprocs != 0 ]]
	427	then
	428	(( Memory = memory * numprocs / 1000 ))
	429	else
	430	(( Memory = memory / 1000 ))
	431	fi
	432	fi
	433
	434
	435	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	436	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	437	then
	438	(( memory = memory * threads_per_task ))
	439	fi
	440
	441
	442	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	443	if (( tasks_per_node != 0 ))
	444	then
	445	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	446	fi
	447
	448
	449
	450	# HEADER-AUSGABE
	451	if [[ $verify = true ]]
	452	then
	453	printf "\n\n"
	454	printf "#--------------------------------------------------------------# \n"
	455	spalte1=SUBJOB;spalte2=$(date)
	456	printf "\| $spalte1$spalte2 \| \n"
	457	printf "\| \| \n"
	458	printf "\| values of parameters/options: \| \n"
	459	spalte1=local_host$punkte; spalte2=$punkte$local_host
	460	printf "\| $spalte1$spalte2 \| \n"
	461	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	462	printf "\| $spalte1$spalte2 \| \n"
	463	spalte1=queue$punkte; spalte2=$punkte$queue
	464	printf "\| $spalte1$spalte2 \| \n"
	465	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	466	printf "\| $spalte1$spalte2 \| \n"
	467	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	468	printf "\| $spalte1$spalte2 \| \n"
	469	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	470	printf "\| $spalte1$spalte2 \| \n"
	471	printf "#--------------------------------------------------------------# \n\n"
	472
	473
	474	# KONTROLLABFRAGE, OB ALLES O.K.
	475	antwort="dummy"
	476	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	477	do
	478	read antwort?" >>> continue (y/n) ? "
	479	done
	480	if [[ $antwort = n \|\| $antwort = N ]]
	481	then
	482	locat=verify; exit
	483	fi
	484	printf "\n"
	485	fi
	486
	487
	488
	489	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	490	kennung=$RANDOM
	491	job_on_remhost=${job_name}_${kennung}_$local_host
	492	job_to_send=job_to_send_$kennung
	493	if [[ $delete_dayfile = false ]]
	494	then
	495	remote_dayfile=${local_host}_${job_name}_result_$kennung
	496	local_dayfile=${remote_host}_${job_name}
	497	else
	498	remote_dayfile=/dev/null
	499	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	500	then
	501	notification='# @ notification = never'
	502	fi
	503	fi
	504
	505
	506
	507	# QSUB- ODER LL-KOMMANDOS BZW. SKRIPTE GENERIEREN
	508	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	509	then
	510
	511	if [[ $remote_host = ibmy ]]
	512	then
	513	consumable_memory=""
	514	else
	515	consumable_memory="ConsumableMemory($memory mb)"
	516	fi
	517	if [[ $queue = cdev ]]
	518	then
	519	data_limit="# @ data_limit = 1.76gb"
	520	network_to_use="# @ network.mpi = sn_all,shared,ip"
	521	else
	522	if [[ $remote_host = ibms ]]
	523	then
	524	network_to_use="# @ network.mpi = csss,shared,us"
	525	elif [[ $remote_host = ibmy ]]
	526	then
	527	network_to_use=""
	528	else
	529	network_to_use="# @ network.mpi = sn_all,shared,us"
	530	data_limit="# @ data_limit = 1.76gb"
	531	fi
	532	fi
	533
	534	cat > $job_to_send << %%END%%
	535	#!/bin/ksh
	536
	537	# @ job_type = parallel
	538	# @ job_name = palm
	539	# @ wall_clock_limit = ${timestring},$timestring
	540	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	541	# @ output = $remote_dayfile
	542	# @ error = $remote_dayfile
	543	# @ image_size = 50
	544	# @ class = $queue
	545	# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes
	546	$network_to_use
	547	$data_limit
	548	$notification
	549
	550	%%END%%
	551
	552	if (( nodes > 0 ))
	553	then
	554
	555	cat >> $job_to_send << %%END%%
	556	# @ node = $nodes
	557	# @ tasks_per_node = $tasks_per_node
	558	# @ node_usage = $node_usage
	559	# @ queue
	560
	561	%%END%%
	562
	563	else
	564
	565	if [[ $remote_host != ibmy ]]
	566	then
	567
	568	cat >> $job_to_send << %%END%%
	569	# @ blocking = unlimited
	570	# @ total_tasks = $numprocs
	571	# @ node_usage = $node_usage
	572	# @ queue
	573
	574	%%END%%
	575
	576	else
	577
	578	cat >> $job_to_send << %%END%%
	579	# @ node = 1
	580	# @ total_tasks = $numprocs
	581	# @ queue
	582
	583	%%END%%
	584
	585	fi
	586
	587	fi
	588
	589	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	590	then
	591
	592	cat > $job_to_send << %%END%%
	593	#!/bin/ksh
	594
	595	# @ job_type = serial
	596	# @ node_usage = $node_usage
	597	# @ job_name = palm
	598	# @ wall_clock_limit = ${timestring},$timestring
	599	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	600	# @ output = $remote_dayfile
	601	# @ error = $remote_dayfile
	602	# @ class = $queue
	603	$notification
	604
	605	# @ queue
	606
	607	%%END%%
	608
	609	elif [[ $remote_host = nech ]]
	610	then
	611
	612	if (( nodes > 1 ))
	613	then
	614	cat > $job_to_send << %%END%%
	615	#!/bin/ksh
	616	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	617	#PBS -l ${qsubmem}=${Memory}gb
	618	#PBS -b $nodes
	619	#PBS -o $remote_dayfile
	620	#PBS -N palm
	621	#PBS -j o
	622	#PBS -T mpisx
	623
	624	%%END%%
	625
	626	elif [[ $numprocs != 0 ]]
	627	then
	628	cat > $job_to_send << %%END%%
	629	#!/bin/ksh
	630	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	631	#PBS -l ${qsubmem}=${Memory}gb
	632	#PBS -o $remote_dayfile
	633	#PBS -N palm
	634	#PBS -j o
	635
	636	%%END%%
	637
	638	else
	639	cat > $job_to_send << %%END%%
	640	#!/bin/ksh
	641	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	642	#PBS -o $remote_dayfile
	643	#PBS -j o
	644
	645	%%END%%
	646
	647	fi
	648
[35]	649	elif [[ $remote_host = neck ]]
	650	then
	651
	652	if (( nodes > 1 ))
	653	then
	654	cat > $job_to_send << %%END%%
	655	#!/bin/ksh
	656	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	657	#PBS -l ${qsubmem}=${Memory}gb
	658	#PBS -b $nodes
	659	#PBS -o $remote_dayfile
	660	#PBS -N palm
	661	#PBS -j o
	662	#PBS -T mpisx
	663
	664	%%END%%
	665
	666	elif [[ $numprocs != 0 ]]
	667	then
	668	cat > $job_to_send << %%END%%
	669	#!/bin/ksh
	670	#PBS -q ${queue}
	671	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
	672	#PBS -l ${qsubmem}=${Memory}gb
	673	#PBS -o $remote_dayfile
	674	#PBS -N palm
	675	#PBS -j o
	676	#PBS -T mpisx
	677
	678	%%END%%
	679
	680	else
	681	cat > $job_to_send << %%END%%
	682	#!/bin/ksh
	683	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	684	#PBS -o $remote_dayfile
	685	#PBS -j o
	686
	687	%%END%%
	688
	689	fi
	690
[1]	691	elif [[ $remote_host = lctit ]]
	692	then
	693	cat > $job_to_send << %%END%%
	694	#!/bin/bash
	695	#$ -S /bin/bash
	696	cd $job_catalog
[69]	697	export PATH=$PALM_BIN:\$PATH
	698	echo \$PATH
[1]	699
	700	%%END%%
	701
	702	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
	703	submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
	704
	705	else
	706
	707	cat > $job_to_send << %%END%%
	708	# @\$-q ${queue}
	709	# @\$-l${qsubtime} $timestring
	710	# @\$-l${qsubmem} ${memory}mb
	711	# @\$-o $remote_dayfile
	712	# @\$-eo
	713
	714	%%END%%
	715
	716	fi
	717
	718
	719	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	720	# BEI EXIT VERANLASSEN
	721	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	722	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	723	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	724	then
	725	echo "set +vx" >> $job_to_send
	726	echo "trap '" >> $job_to_send
	727	echo "set +vx" >> $job_to_send
[35]	728	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
[1]	729	then
	730	if [[ $remote_host = ibmb \|\| $remote_host = ibmh ]]
	731	then
	732	return_queue=c1
	733	elif [[ $remote_host = ibms ]]
	734	then
	735	return_queue=p_normal
	736	elif [[ $remote_host = ibmy ]]
	737	then
	738	return_queue=serial
	739	elif [[ $remote_host = lctit ]]
	740	then
	741	return_queue=default
[35]	742	elif [[ $remote_host = neck ]]
[1]	743	then
[35]	744	return_queue=S
[1]	745	else
	746	return_queue=unknown
	747	fi
	748
	749	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	750	then
	751
	752	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	753	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	754	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	755	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	756	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	757	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	758	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	759	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	760	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	761	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	762
	763	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	764	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	765
	766	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
	767	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
	768	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	769
	770	elif [[ $remote_host = nech ]]
	771	then
	772	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	773	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	774	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	775	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	776	echo "#PBS -j o" >> $job_to_send
	777	echo " " >> $job_to_send
	778	echo "set -x" >> $job_to_send
	779	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	780	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	781	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	782	echo "%%END%%" >> $job_to_send
	783
[35]	784	elif [[ $remote_host = neck ]]
	785	then
	786	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	787	echo "#PBS -q $return_queue" >> $job_to_send
	788	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	789	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	790	echo "#PBS -j o" >> $job_to_send
	791	echo " " >> $job_to_send
	792	echo "set -x" >> $job_to_send
	793	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	794	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	795	echo "%%END%%" >> $job_to_send
	796
[1]	797	elif [[ $remote_host = lctit ]]
	798	then
	799	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	800	echo "set -x" >> $job_to_send
	801	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
	802	echo "cd $job_catalog" >> $job_to_send
	803	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	804	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	805	echo "%%END%%" >> $job_to_send
	806
	807	else
	808
	809	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	810	echo "# @\\\$-q $return_queue" >> $job_to_send
	811	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	812	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	813	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	814	then
	815	echo "# @\$-l mpp_p=0" >> $job_to_send
	816	fi
	817	echo '# @\$-lF 10mb' >> $job_to_send
	818	# echo '# @\$-o /dev/null' >> $job_to_send
	819	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	820	echo '# @\\\$-eo' >> $job_to_send
	821	echo " " >> $job_to_send
	822	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	823	then
	824	echo "set +vx" >> $job_to_send
	825	echo ". .profile" >> $job_to_send
	826	fi
	827	echo "set -x" >> $job_to_send
	828	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
	829	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	830	echo "%%END%%" >> $job_to_send
	831	fi
	832
	833	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	834	then
	835	echo "llsubmit scpjob.$kennung" >> $job_to_send
	836	elif [[ $remote_host = lctit ]]
	837	then
	838	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	839	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
	840	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
	841	echo "sleep 10" >> $job_to_send
	842	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	843	then
	844	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	845	elif [[ $remote_host = t3es ]]
	846	then
	847	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
	848	else
	849	echo "qsub scpjob.$kennung" >> $job_to_send
	850	fi
	851	echo "rm scpjob.$kennung" >> $job_to_send
	852	if [[ $remote_host = nech ]]
	853	then
	854	echo "cd -" >> $job_to_send
	855	fi
	856	else
	857	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	858	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	859	fi
	860	echo "set -x" >> $job_to_send
	861	echo " ' exit" >> $job_to_send
	862	echo "set -x" >> $job_to_send
	863	fi
	864
	865
	866
	867	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	868	cat $file_to_send >> $job_to_send
[69]	869
[1]	870	if [[ $remote_host = ibm ]]
	871	then
	872	echo " " >> $job_to_send
	873	echo "exit" >> $job_to_send
	874	fi
[69]	875	if [[ $remote_host = lctit ]]
	876	then
	877	echo " " >> $job_to_send
	878	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	879	fi
[1]	880
	881
	882
	883	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	884	if [[ -z $remote_user ]]
	885	then
	886	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	887	then
	888	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	889	fi
	890	fi
	891
	892
	893
	894	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	895	if [[ $no_submit = false ]]
	896	then
	897	if [[ $remote_host != $local_host ]]
	898	then
	899	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	900	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	901	then
[82]	902	job_catalog_save=$job_catalog
	903	job_catalog=job_queue
	904	elif [[ $remote_host = nech ]]
	905	then
	906	job_catalog_save=$job_catalog
	907	job_catalog=/hpf/b/${remote_user}/job_queue
	908	fi
	909	if [[ $local_host = decalpha ]]
	910	then
	911	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
	912	# PASSWORT AB
	913	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
	914	elif [[ $remote_host = nech ]]
	915	then
	916	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	917	# TRANSFERIERT WERDEN
	918	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	919	else
[82]	920	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	921	fi
[82]	922	if [[ $? = 1 ]]
	923	then
	924	locat=scp; exit
	925	fi
	926	if [[ $remote_host = ibms ]]
	927	then
	928	job_catalog=$job_catalog_save
	929	fi
[1]	930	[[ $verify = true ]] && printf "\n >>> finished\n"
	931	else
	932	eval job_catalog=$job_catalog
	933	cp $job_to_send ${job_catalog}/$job_on_remhost
	934	fi
	935
	936
	937
	938	# NQS- BZW. LOADLEVELER-JOB STARTEN
	939	if [[ $remote_host != $local_host ]]
	940	then
	941	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[82]	942	if [[ $remote_host != lctit ]]
[1]	943	then
[82]	944	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[1]	945	else
[82]	946	# TIT ERLAUBT NUR DIE AUSFÜHRUNG GANZ BESTIMMTER KOMMANDOS
	947	# MIT SSH, DESHALB AUFRUF PER PIPE
	948	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
	949	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	950	echo "first try" > send_protocol
	951	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
	952	do
	953	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
	954	then
	955	printf "\n trying to submit job to TIT cluster..."
	956	else
	957	printf "\n +++ failed ... trying to submit again ..."
	958	fi
	959	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
	960	cat send_protocol
	961	done
	962	sleep 10
	963	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
	964	echo "$submcom $job_on_remhost"
	965	rm send_protocol
	966	fi
[1]	967
	968	[[ $verify = true ]] && printf " >>> o.k.\n"
	969	else
	970	cd $job_catalog
	971	if [[ $(echo $local_host \| cut -c1-3) = ibm ]]
	972	then
	973	eval $submcom $job_on_remhost
	974	elif [[ $local_host = lctit ]]
	975	then
	976	eval $submcom $job_on_remhost
	977	echo "$submcom $job_on_remhost"
	978	chmod u+x $job_on_remhost
	979	elif [[ $local_host = nech ]]
	980	then
	981	if [[ $queue = default ]]
	982	then
	983	eval $submcom $job_on_remhost
	984	else
	985	eval $submcom -q $queue $job_on_remhost
	986	fi
	987	else
	988	qsub $job_on_remhost
	989	fi
[69]	990	# JOBFILE DARF AUF LCTIT NICHT GELOESCHT WERDEN!! GESCHIEHT ERST AM JOBENDE
	991	[[ $local_host != lctit ]] && rm $job_on_remhost
[1]	992	cd - > /dev/null
	993	fi
	994	fi
	995
	996
	997
	998	# ABSCHLUSSARBEITEN
	999
	1000	if [[ $no_submit = false ]]
	1001	then
	1002	rm $job_to_send
	1003	fi
	1004	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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