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source: palm/trunk/SCRIPTS/palmbuild @ 4074

Last change on this file since 4074 was 3756, checked in by suehring, 6 years ago
Disable compilation of postprocessing tool for surface output, until crashes with unexpected segmentation faults with intel compiler are solved.
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 34.5 KB

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1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2018 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 3756 2019-02-20 11:24:32Z eckhard $
29	# Disable compilation of postprocessing tool for surface output, until
30	# crashes with unexpected segmentation faults with intel compiler are solved.
31	#
32	# 3725 2019-02-07 10:11:02Z raasch
33	# ssh-calls for compilations on remote systems modified to avoid output
34	# of login messages on specific systems changed again (reverted as before r3549)
35	#
36	# 3549 2018-11-21 15:44:44Z raasch
37	# ssh-calls for compilations on remote systems modified to avoid output
38	# of login messages on specific systems
39	#
40	# 3534 2018-11-19 15:35:16Z raasch
41	# build of inifor added,
42	# ssh-calls rearranged to avoid output of system/user-profile messages
43	#
44	# 3523 2018-11-13 16:09:31Z suehring
45	# Enable compilation of post-processing tool for surface output - interface
46	# for posix conform sytemcalls is implemented.
47	#
48	# 3499 2018-11-07 10:55:15Z suehring
49	# Temporarily avoid compilation of post-processing tool for surface output
50	# until a workaround for compiler-specific intrinsic functions is found.
51	#
52	# 3494 2018-11-06 14:51:27Z suehring
53	# Add tool for surface-output post-processing
54	#
55	# 3455 2018-10-30 14:12:31Z raasch
56	# options -h and -d renamed -c and -r, respectively
57	#
58	# 3312 2018-10-06 14:15:46Z knoop
59	# "host identifier" in header output renamed "config. identifier",
60	# host_configuration renamed configuration_identifier,
61	# jobname renamed run_identifier
62	# header output of PALM code revision,
63	# options -m, -s, and -S removed
64	#
65	# 3210 2018-08-28 07:31:13Z sward
66	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
67	#
68	# 3208 2018-08-27 13:10:50Z sward
69	# Added building of agent_preprocessing
70	#
71	# 3033 2018-05-23 15:26:19Z raasch
72	# "fname" renamed to "jobname"
73	#
74	# 2718 2018-01-02 08:49:38Z maronga
75	# Corrected "Former revisions" section
76	#
77	# 2696 2017-12-14 17:12:51Z kanani
78	# Change in file header (GPL part)
79	#
80	# 2566 2017-10-20 08:50:47Z raasch
81	# informative messages switched of almost completely in silent mode
82	# two header blocks merged into one
83	#
84	# 2506 2017-09-29 08:30:37Z raasch
85	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
86	# host configuration added to SOURCES_FOR_RUN_... folder name
87	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
88	# host_identifier renamed host_configuration
89	#
90	# 2500 2017-09-25 11:10:03Z raasch
91	# bugfix for r2492
92	#
93	# 2492 2017-09-21 14:18:48Z raasch
94	# ask for compilation, if SOURCES_FOR_RUN_... exists
95	#
96	# 2487 2017-09-21 11:30:10Z raasch
97	# bugfix: abort in case of compiling/linking errors in silent mode
98	#
99	# 2422 2017-09-08 08:25:41Z raasch
100	# initial revision
101	#
102	#------------------------------------------------------------------------------#
103	# palmbuild - script for compiling the PALM code and its utility programs
104	#
105	# Procedure to compile code on local and remote hosts using the
106	# make-mechanism. The source code must be provided on the local host.
107	#
108	# @note This script does not work on MAC OS
109	#------------------------------------------------------------------------------#
110
111
112	# VARIABLE DECLARATIONS + DEFAULT VALUES
113	calltime=""
114	column1=""
115	column2=""
116	configuration_identifier=default
117	global_revision=""
118	locat=normal
119	makefile=""
120	make_options=""
121	module_commands=""
122	program_name=palm
123	remote_ip=""
124	silent=false
125	ssh_key=""
126	suf=f90
127	use_existing_sources_folder=false
128	version="palmbuild 1.0 Rev$Rev: 3756 $"
129	working_directory=`pwd`
130
131
132	# ERROR HANDLING IN CASE OF EXIT
133	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
134	if [[ $locat != normal && $locat != control_c ]]
135	then
136	printf "\n\n+++ palmbuild crashed \n\n"
137	exit 1
138	elif [[ $locat != normal ]]
139	then
140	printf "\n+++ palmbuild killed by \"^C\" \n\n"
141	exit 2
142	else
143	if [[ $silent = false ]]
144	then
145	printf "\n --> palmbuild finished\n\n"
146	fi
147	exit 0
148	fi' exit
149
150
151	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
152	trap 'locat=control_c
153	exit 1
154	' 2
155
156
157
158	# READ SHELLSCRIPT-OPTIONS
159	while getopts :c:r:uvV option
160	do
161	case $option in
162	(c) configuration_identifier=$OPTARG;;
163	(r) run_identifier=$OPTARG;;
164	(v) silent=true;;
165	(V) use_existing_sources_folder=true;;
166	(\?) printf "\n +++ unknown option $OPTARG \n";
167	locat=parameter; exit;;
168	esac
169	done
170
171
172	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
173	config_file=.palm.config.$configuration_identifier
174	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
175
176
177	# CHECK, IF CONFIGURATION-FILE EXISTS
178	if [[ ! -f $config_file ]]
179	then
180	printf "\n +++ configuration file: "
181	printf "\n $config_file"
182	printf "\n does not exist"
183	locat=configuration; exit
184	fi
185
186
187	# ### is this really required?
188	config_file=$PWD/$config_file
189
190
191	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
192	while read line
193	do
194
195	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
196	eval line=\"$line\"
197
198
199	# INTERPRET THE LINE
200	if [[ "$(echo $line)" = "" ]]
201	then
202
203	# EMPTY LINE, NO ACTION
204	continue
205
206	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
207	then
208
209	# LINE IS A COMMENT LINE
210	continue
211
212	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
213	then
214
215	# LINE DEFINES AN ENVIRONMENT-VARIABLE
216	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
217	value=`echo $line \| cut -d" " -s -f2-`
218
219	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
220	# "::" IS REPLACED BY ":".
221	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
222
223
224	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
225	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
226	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
227	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
228	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
229	# CONFIGURATION-FILE.
230	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
231	then
232	eval export $var="\$value"
233
234	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
235	if [[ $do_trace = true ]]
236	then
237	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
238	fi
239	fi
240
241	else
242
243	# SKIP ALL OTHER LINES
244	continue
245
246	fi
247
248	done < $config_file
249
250
251	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
252	if [[ "$base_directory" = "" ]]
253	then
254	printf "\n +++ no base directory found in configuration file"
255	locat=config_file; exit
256	else
257	if [[ ! -d $base_directory ]]
258	then
259	printf "\n\n +++ base directory \"$base_directory\" "
260	printf "\n does not exist"
261	locat=source_path; exit
262	fi
263	fi
264
265
266	# CHECK SOURCE-CODE PATH
267	if [[ "$source_path" = "" ]]
268	then
269	printf "\n +++ no source path found in configuration file"
270	locat=config_file; exit
271	else
272	if [[ ! -d $source_path ]]
273	then
274	printf "\n\n +++ source path \"$source_path\" "
275	printf "\n does not exist"
276	locat=source_path; exit
277	fi
278	fi
279
280
281	# CHECK MAKEFILE
282	makefile=$source_path/Makefile
283	if [[ ! -f $makefile ]]
284	then
285	printf "\n +++ makefile: "
286	printf "\n $makefile"
287	printf "\n does not exist"
288	locat=makefile; exit
289	fi
290
291
292	# CHECK COMPILERNAME
293	if [[ "$compiler_name" = "" ]]
294	then
295	printf "\n +++ no compiler name found in configuration file"
296	locat=config_file; exit
297	fi
298
299
300	# CHECK SERIAL COMPILERNAME
301	if [[ "$compiler_name_ser" = "" ]]
302	then
303	printf "\n +++ no compiler name for serial compilation in configuration file"
304	locat=config_file; exit
305	fi
306
307
308	# DETERMINE SSH-KEY TO BE USED
309	if [[ "$ssh_key" != "" ]]
310	then
311	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
312	fi
313
314
315	#CHECK CPP-OPTIONS
316	if [[ "$cpp_options" = "" ]]
317	then
318	printf "\n +++ WARNING: no cpp-options found in configuration file"
319	fi
320
321
322	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
323	if [[ "$remote_ip" != "" ]]
324	then
325
326	if [[ "$remote_username" = "" ]]
327	then
328	printf "\n +++ no user name given in configuration file"
329	locat=config_file; exit
330	fi
331
332	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
333	# THE $
334	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
335	line=`grep %remote_source_path $config_file`
336	if [[ "$line" != "" ]]
337	then
338	remote_source_path=`echo $line \| cut -d" " -s -f2`
339	else
340	line=`grep %source_path $config_file`
341	remote_source_path=`echo $line \| cut -d" " -s -f2`
342	fi
343
344	line=`grep %base_directory $config_file`
345	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
346
347	else
348
349	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
350
351	fi
352
353
354	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
355	global_revision=`svnversion $source_path 2>/dev/null`
356	global_revision="Rev: $global_revision"
357
358
359	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
360	if [[ $silent = false ]]
361	then
362	calltime=$(date)
363	printf "\n"
364	printf "#------------------------------------------------------------------------# \n"
365	printf "\| %-40s%30s \| \n" "$version" "$calltime"
366	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
367	printf "\| \| \n"
368	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
369	column2=$(echo $config_file \| cut -c1-57 )
370	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
371	line=$(echo "$config_file" \| cut -c58-)
372	while [[ "$line" != "" ]]
373	do
374	column1=""
375	column2=$(echo $line \| cut -c1-57 )
376	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
377	line=$(echo "$line" \| cut -c58-)
378	done
379	column2=$(echo $makefile \| cut -c1-57 )
380	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
381	line=$(echo "$makefile" \| cut -c58-)
382	while [[ "$line" != "" ]]
383	do
384	column1=""
385	column2=$(echo $line \| cut -c1-57 )
386	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
387	line=$(echo "$line" \| cut -c58-)
388	done
389	column2=$(echo $source_path \| cut -c1-57 )
390	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
391	line=$(echo "$source_path" \| cut -c58-)
392	while [[ "$line" != "" ]]
393	do
394	column1=""
395	column2=$(echo $line \| cut -c1-57 )
396	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
397	line=$(echo "$line" \| cut -c58-)
398	done
399	printf "\| \| \n"
400
401	if [[ "$remote_ip" != "" ]]
402	then
403	column2="$configuration_identifier"
404	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
405	column2=$(echo "$make_depository" \| cut -c1-50 )
406	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
407	else
408	column2="$configuration_identifier"
409	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
410	column2=$(echo "$make_depository" \| cut -c1-50 )
411	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
412	fi
413	line=$(echo "$make_depository" \| cut -c51-)
414	while [[ "$line" != "" ]]
415	do
416	column1=""
417	column2=$(echo "$line" \| cut -c1-50 )
418	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
419	line=$(echo "$line" \| cut -c51-)
420	done
421
422	if [[ "$remote_ip" != "" ]]
423	then
424	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
425	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
426	else
427	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
428	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
429	fi
430
431	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
432	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
433
434	if [[ "$make_options" != "" ]]
435	then
436	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
437	fi
438	column2=$(echo "$cpp_options" \| cut -c1-50 )
439	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
440	line=$(echo "$cpp_options" \| cut -c51-)
441	while [[ "$line" != "" ]]
442	do
443	column1=""
444	column2=$(echo "$line" \| cut -c1-50 )
445	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
446	line=$(echo "$line" \| cut -c51-)
447	done
448	column2=$(echo "$compiler_options" \| cut -c1-50 )
449	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
450	line=$(echo "$compiler_options" \| cut -c51-)
451	while [[ "$line" != "" ]]
452	do
453	column1=""
454	column2=$(echo "$line" \| cut -c1-50 )
455	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
456	line=$(echo "$line" \| cut -c51-)
457	done
458	column2=$(echo "$linker_options" \| cut -c1-50 )
459	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
460	line=$(echo "$linker_options" \| cut -c51-)
461	while [[ "$line" != "" ]]
462	do
463	column1=""
464	column2=$(echo "$line" \| cut -c1-50 )
465	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
466	line=$(echo "$line" \| cut -c51-)
467	done
468	if [[ "$login_init_cmd" != "" ]]
469	then
470	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
471	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
472	line=$(echo "$login_init_cmd" \| cut -c51-)
473	while [[ "$line" != "" ]]
474	do
475	column1=""
476	column2=$(echo "$line" \| cut -c1-50 )
477	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
478	line=$(echo "$line" \| cut -c51-)
479	done
480	fi
481	if [[ "$module_commands" != "" ]]
482	then
483	column2=$(echo "$module_commands" \| cut -c1-50 )
484	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
485	line=$(echo "$module_commands" \| cut -c51-)
486	while [[ "$line" != "" ]]
487	do
488	column1=""
489	column2=$(echo "$line" \| cut -c1-50 )
490	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
491	line=$(echo "$line" \| cut -c51-)
492	done
493	fi
494	printf "#------------------------------------------------------------------------# \n"
495
496	answer=dummy
497	printf "\n"
498	while [[ "$answer" != y && "$answer" != Y && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
499	do
500	printf " >>> continue (y(es)/a(bort)) ? "
501	read answer
502	done
503	if [[ $answer = a \|\| $answer = A ]]
504	then
505	locat=user_abort; exit
506	fi
507	fi
508
509
510	# TAR THE SOURCES AND MAKEFILES
511	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
512	# THEM TOO
513	if [[ $silent = false ]]
514	then
515	printf "\n\n *** tar of makefile and source files in"
516	printf "\n $source_path\n"
517	fi
518	cd $source_path
519	cp -p ../UTIL/combine_plot_fields.f90 .
520	cp -p ../UTIL/compare_palm_logs.f90 .
521	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
522	#cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
523	cp -p ../UTIL/inifor/src/inifor*f90 .
524	cp -p ../UTIL/Makefile_utilities .
525	tar -cf ${program_name}_sources.tar Makefile* *.$suf
526	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities inifor*f90 #surface_output_to_vtk.f90
527
528
529	# MAKE ON REMOTE HOST
530	if [[ "$remote_ip" != "" ]]
531	then
532
533	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
534	if [[ "$run_identifier" = "" ]]
535	then
536
537	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
538	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
539	if [[ $silent = false ]]
540	then
541	echo " "
542	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
543	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
544	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
545	else
546	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
547	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
548	fi
549
550
551
552
553	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
554	if [[ $silent = false ]]
555	then
556	echo " *** untar previous update on remote host, if existing"
557	fi
558	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
559
560
561	# UNTAR CURRENT SOURCES ON REMOTE HOST
562	if [[ $silent = false ]]
563	then
564	echo " *** untar current sources on remote host"
565	fi
566	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
567
568
569	# CREATE INIT AND MODULE COAMMNDS
570	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
571	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
572
573
574	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
575	if [[ $silent = false ]]
576	then
577	echo " "
578	echo " *** creating utilities on remote host"
579	fi
580	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
581	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>/dev/null \| tee ${configuration_identifier}_last_make_protocol
582	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
583
584	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
585	then
586	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
587	printf "\n for host configuration \"$configuration_identifier\" "
588	if [[ $silent = false ]]
589	then
590	answer=dummy
591	printf "\n"
592	while [[ "$answer" != c && "$answer" != k ]]
593	do
594	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
595	read answer
596	if [[ "$answer" = l ]]
597	then
598	more ${configuration_identifier}_last_make_protocol
599	fi
600	done
601	if [[ $answer = k ]]
602	then
603	locat=user_abort; exit
604	fi
605	else
606	# ABORT ANYWAY
607	locat=user_abort; exit
608	fi
609	fi
610
611	# NOW COMPILE THE PALM CODE
612	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
613	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
614	# MAY E.G. MISS THE COMPILER-PATHS)
615	if [[ $silent = false ]]
616	then
617	echo " "
618	echo " *** compile PALM sources on remote host"
619	fi
620	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
621	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
622	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
623
624	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
625	then
626	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
627	if [[ $silent = false ]]
628	then
629	answer=dummy
630	printf "\n"
631	while [[ "$answer" != c && "$answer" != k ]]
632	do
633	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
634	read answer
635	if [[ "$answer" = l ]]
636	then
637	more ${configuration_identifier}_last_make_protocol
638	fi
639	done
640	if [[ $answer = k ]]
641	then
642	locat=user_abort; exit
643	fi
644	else
645	# ABORT ANYWAY
646	locat=user_abort; exit
647	fi
648	fi
649
650	# TAR UPDATED VERSION ON THE REMOTE HOST
651	if [[ $silent = false ]]
652	then
653	printf "\n *** tar update on remote host ..."
654	fi
655	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
656
657
658	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
659	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
660	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
661	elif [[ "$run_identifier" != "" ]]
662	then
663
664	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
665	# AND ASK, IF THEY SHALL BE USED
666	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
667	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
668	then
669	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
670	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
671	printf "\n will be used!"
672	exit
673	fi
674
675	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
676	if [[ $silent = false ]]
677	then
678	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
679	fi
680	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
681
682
683	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
684	if [[ $silent = false ]]
685	then
686	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
687	printf "\n to $sources_for_run_catalog on remote host \n"
688	fi
689	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
690
691
692	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
693	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
694	then
695
696	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
697	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
698	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
699	if [[ $silent = false ]]
700	then
701	echo " *** execute \"make\" on remote host"
702	fi
703	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
704
705	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
706	then
707	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
708	if [[ $silent = false ]]
709	then
710	answer=dummy
711	printf "\n"
712	while [[ "$answer" != c && "$answer" != k ]]
713	do
714	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
715	read answer
716	if [[ "$answer" = l ]]
717	then
718	more ${configuration_identifier}_last_make_protocol
719	fi
720	done
721	if [[ $answer = k ]]
722	then
723	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
724	locat=user_abort; exit
725	fi
726	else
727	# ABORT ANYWAY
728	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
729	locat=user_abort; exit
730	fi
731	fi
732
733	else
734
735	echo " *** nothing to compile for this run"
736
737	fi
738
739	fi
740
741	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
742
743
744	# MAKE ON LOCAL HOST
745	else
746
747
748	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
749	# LOCAL HOST
750	if [[ "$run_identifier" = "" ]]
751	then
752
753	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
754	if [[ "$login_init_cmd" != "" ]]
755	then
756	$login_init_cmd
757	fi
758
759	if [[ "$module_commands" != "" ]]
760	then
761	$module_commands
762	fi
763
764
765	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
766	eval make_depository=$make_depository
767	if [[ ! -d $make_depository ]]
768	then
769	if mkdir -p $make_depository
770	then
771	if [[ $silent = false ]]
772	then
773	printf "\n\n *** directory for local make depository:"
774	printf "\n $make_depository"
775	printf "\n was created\n"
776	fi
777	else
778	printf "\n +++ directory for local make depository:"
779	printf "\n $make_depository"
780	printf "\n cannot be created"
781	locat=local_depository; exit
782	fi
783	fi
784
785	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
786	if [[ $silent = false ]]
787	then
788	echo " "
789	echo " *** untar current source sources on local host in"
790	echo " $make_depository"
791	fi
792	cd $make_depository
793	cp $source_path/${program_name}_sources.tar .
794	tar xf ${program_name}_sources.tar
795
796
797	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
798	if [[ $silent = false ]]
799	then
800	echo " "
801	echo " *** creating utilities on local host"
802	fi
803	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
804
805	if [[ ${PIPESTATUS[0]} != 0 ]]
806	then
807	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
808	if [[ $silent = false ]]
809	then
810	answer=dummy
811	printf "\n"
812	while [[ "$answer" != c && "$answer" != k ]]
813	do
814	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
815	read answer
816	if [[ "$answer" = l ]]
817	then
818	more ${configuration_identifier}_last_make_protocol
819	fi
820	done
821	if [[ $answer = k ]]
822	then
823	locat=user_abort; exit
824	fi
825	else
826	# ABORT ANYWAY
827	locat=user_abort; exit
828	fi
829	else
830	cp agent_preprocessing $source_path/../SCRIPTS/.
831	cp inifor $source_path/../SCRIPTS/.
832	fi
833
834
835	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
836	if [[ $silent = false ]]
837	then
838	echo " "
839	echo " *** compile PALM sources on local host"
840	fi
841
842	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
843
844	if [[ ${PIPESTATUS[0]} != 0 ]]
845	then
846	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
847	if [[ $silent = false ]]
848	then
849	answer=dummy
850	printf "\n"
851	while [[ "$answer" != c && "$answer" != k ]]
852	do
853	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
854	read answer
855	if [[ "$answer" = l ]]
856	then
857	more ${configuration_identifier}_last_make_protocol
858	fi
859	done
860	if [[ $answer = k ]]
861	then
862	locat=user_abort; exit
863	fi
864	else
865	# ABORT ANYWAY
866	locat=user_abort; exit
867	fi
868	fi
869
870
871	# TAR NEW VERSION ON LOCAL HOST
872	if [[ $silent = false ]]
873	then
874	printf "\n *** tar update on local host ..."
875	fi
876	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
877
878	else
879
880	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
881	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
882	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
883
884	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
885	# AND ASK, IF THEY SHALL BE USED
886	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
887	then
888	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
889	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
890	printf "\n will be used!"
891	exit
892	fi
893
894	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
895	if [[ ! -d ${make_depository} ]]
896	then
897	printf "\n +++ directory for local make depository:"
898	printf "\n $make_depository"
899	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
900	locat=make_depository; exit
901	fi
902
903
904	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
905	if [[ $silent = false ]]
906	then
907	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
908	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
909	fi
910	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
911	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
912	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
913	cd $fast_io_catalog/${sources_for_run_catalog}
914	tar xf ${program_name}_current_version.tar
915
916
917	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
918	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
919	if [[ $silent = false ]]
920	then
921	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
922	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
923	fi
924	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
925
926
927	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
928	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
929	then
930
931	if [[ $silent = false ]]
932	then
933	echo " *** execute \"make\" on local host"
934	fi
935	[[ "$login_init_cmd" != "" ]] && $login_init_cmd
936	[[ "$module_commands" != "" ]] && $module_commands
937
938	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
939
940	if [[ ${PIPESTATUS[0]} != 0 ]]
941	then
942
943	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
944	if [[ $silent = false ]]
945	then
946	answer=dummy
947	printf "\n"
948	while [[ "$answer" != c && "$answer" != k ]]
949	do
950	printf " >>> continue / kill palmbuild (c/k) ? "
951	read answer
952	done
953	if [[ $answer = k ]]
954	then
955	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
956	locat=user_abort; exit
957	fi
958	else
959	# ABORT ANYWAY
960	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
961	locat=user_abort; exit
962	fi
963	fi
964
965	else
966
967	echo " *** nothing to compile for this run"
968
969	fi
970
971	fi
972	fi

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