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source: palm/trunk/SCRIPTS/palmbuild @ 3725

Last change on this file since 3725 was 3725, checked in by raasch, 6 years ago
modifications to avoid compiler warnings about unused variables, temperton-fft: GOTO statements replaced, file re-formatted corresponding to coding standards, ssh-calls for compilations on remote systems modified to avoid output of login messages on specific systems changed again (palmbuild, reverted as before r3549), error messages for failed restarts extended (palmrun)
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 34.4 KB

Line
1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2018 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 3725 2019-02-07 10:11:02Z raasch $
29	# ssh-calls for compilations on remote systems modified to avoid output
30	# of login messages on specific systems changed again (reverted as before r3549)
31	#
32	# 3549 2018-11-21 15:44:44Z raasch
33	# ssh-calls for compilations on remote systems modified to avoid output
34	# of login messages on specific systems
35	#
36	# 3534 2018-11-19 15:35:16Z raasch
37	# build of inifor added,
38	# ssh-calls rearranged to avoid output of system/user-profile messages
39	#
40	# 3523 2018-11-13 16:09:31Z suehring
41	# Enable compilation of post-processing tool for surface output - interface
42	# for posix conform sytemcalls is implemented.
43	#
44	# 3499 2018-11-07 10:55:15Z suehring
45	# Temporarily avoid compilation of post-processing tool for surface output
46	# until a workaround for compiler-specific intrinsic functions is found.
47	#
48	# 3494 2018-11-06 14:51:27Z suehring
49	# Add tool for surface-output post-processing
50	#
51	# 3455 2018-10-30 14:12:31Z raasch
52	# options -h and -d renamed -c and -r, respectively
53	#
54	# 3312 2018-10-06 14:15:46Z knoop
55	# "host identifier" in header output renamed "config. identifier",
56	# host_configuration renamed configuration_identifier,
57	# jobname renamed run_identifier
58	# header output of PALM code revision,
59	# options -m, -s, and -S removed
60	#
61	# 3210 2018-08-28 07:31:13Z sward
62	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
63	#
64	# 3208 2018-08-27 13:10:50Z sward
65	# Added building of agent_preprocessing
66	#
67	# 3033 2018-05-23 15:26:19Z raasch
68	# "fname" renamed to "jobname"
69	#
70	# 2718 2018-01-02 08:49:38Z maronga
71	# Corrected "Former revisions" section
72	#
73	# 2696 2017-12-14 17:12:51Z kanani
74	# Change in file header (GPL part)
75	#
76	# 2566 2017-10-20 08:50:47Z raasch
77	# informative messages switched of almost completely in silent mode
78	# two header blocks merged into one
79	#
80	# 2506 2017-09-29 08:30:37Z raasch
81	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
82	# host configuration added to SOURCES_FOR_RUN_... folder name
83	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
84	# host_identifier renamed host_configuration
85	#
86	# 2500 2017-09-25 11:10:03Z raasch
87	# bugfix for r2492
88	#
89	# 2492 2017-09-21 14:18:48Z raasch
90	# ask for compilation, if SOURCES_FOR_RUN_... exists
91	#
92	# 2487 2017-09-21 11:30:10Z raasch
93	# bugfix: abort in case of compiling/linking errors in silent mode
94	#
95	# 2422 2017-09-08 08:25:41Z raasch
96	# initial revision
97	#
98	#------------------------------------------------------------------------------#
99	# palmbuild - script for compiling the PALM code and its utility programs
100	#
101	# Procedure to compile code on local and remote hosts using the
102	# make-mechanism. The source code must be provided on the local host.
103	#
104	# @note This script does not work on MAC OS
105	#------------------------------------------------------------------------------#
106
107
108	# VARIABLE DECLARATIONS + DEFAULT VALUES
109	calltime=""
110	column1=""
111	column2=""
112	configuration_identifier=default
113	global_revision=""
114	locat=normal
115	makefile=""
116	make_options=""
117	module_commands=""
118	program_name=palm
119	remote_ip=""
120	silent=false
121	ssh_key=""
122	suf=f90
123	use_existing_sources_folder=false
124	version="palmbuild 1.0 Rev$Rev: 3725 $"
125	working_directory=`pwd`
126
127
128	# ERROR HANDLING IN CASE OF EXIT
129	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
130	if [[ $locat != normal && $locat != control_c ]]
131	then
132	printf "\n\n+++ palmbuild crashed \n\n"
133	exit 1
134	elif [[ $locat != normal ]]
135	then
136	printf "\n+++ palmbuild killed by \"^C\" \n\n"
137	exit 2
138	else
139	if [[ $silent = false ]]
140	then
141	printf "\n --> palmbuild finished\n\n"
142	fi
143	exit 0
144	fi' exit
145
146
147	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
148	trap 'locat=control_c
149	exit 1
150	' 2
151
152
153
154	# READ SHELLSCRIPT-OPTIONS
155	while getopts :c:r:uvV option
156	do
157	case $option in
158	(c) configuration_identifier=$OPTARG;;
159	(r) run_identifier=$OPTARG;;
160	(v) silent=true;;
161	(V) use_existing_sources_folder=true;;
162	(\?) printf "\n +++ unknown option $OPTARG \n";
163	locat=parameter; exit;;
164	esac
165	done
166
167
168	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
169	config_file=.palm.config.$configuration_identifier
170	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
171
172
173	# CHECK, IF CONFIGURATION-FILE EXISTS
174	if [[ ! -f $config_file ]]
175	then
176	printf "\n +++ configuration file: "
177	printf "\n $config_file"
178	printf "\n does not exist"
179	locat=configuration; exit
180	fi
181
182
183	# ### is this really required?
184	config_file=$PWD/$config_file
185
186
187	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
188	while read line
189	do
190
191	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
192	eval line=\"$line\"
193
194
195	# INTERPRET THE LINE
196	if [[ "$(echo $line)" = "" ]]
197	then
198
199	# EMPTY LINE, NO ACTION
200	continue
201
202	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
203	then
204
205	# LINE IS A COMMENT LINE
206	continue
207
208	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
209	then
210
211	# LINE DEFINES AN ENVIRONMENT-VARIABLE
212	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
213	value=`echo $line \| cut -d" " -s -f2-`
214
215	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
216	# "::" IS REPLACED BY ":".
217	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
218
219
220	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
221	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
222	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
223	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
224	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
225	# CONFIGURATION-FILE.
226	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
227	then
228	eval export $var="\$value"
229
230	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
231	if [[ $do_trace = true ]]
232	then
233	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
234	fi
235	fi
236
237	else
238
239	# SKIP ALL OTHER LINES
240	continue
241
242	fi
243
244	done < $config_file
245
246
247	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
248	if [[ "$base_directory" = "" ]]
249	then
250	printf "\n +++ no base directory found in configuration file"
251	locat=config_file; exit
252	else
253	if [[ ! -d $base_directory ]]
254	then
255	printf "\n\n +++ base directory \"$base_directory\" "
256	printf "\n does not exist"
257	locat=source_path; exit
258	fi
259	fi
260
261
262	# CHECK SOURCE-CODE PATH
263	if [[ "$source_path" = "" ]]
264	then
265	printf "\n +++ no source path found in configuration file"
266	locat=config_file; exit
267	else
268	if [[ ! -d $source_path ]]
269	then
270	printf "\n\n +++ source path \"$source_path\" "
271	printf "\n does not exist"
272	locat=source_path; exit
273	fi
274	fi
275
276
277	# CHECK MAKEFILE
278	makefile=$source_path/Makefile
279	if [[ ! -f $makefile ]]
280	then
281	printf "\n +++ makefile: "
282	printf "\n $makefile"
283	printf "\n does not exist"
284	locat=makefile; exit
285	fi
286
287
288	# CHECK COMPILERNAME
289	if [[ "$compiler_name" = "" ]]
290	then
291	printf "\n +++ no compiler name found in configuration file"
292	locat=config_file; exit
293	fi
294
295
296	# CHECK SERIAL COMPILERNAME
297	if [[ "$compiler_name_ser" = "" ]]
298	then
299	printf "\n +++ no compiler name for serial compilation in configuration file"
300	locat=config_file; exit
301	fi
302
303
304	# DETERMINE SSH-KEY TO BE USED
305	if [[ "$ssh_key" != "" ]]
306	then
307	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
308	fi
309
310
311	#CHECK CPP-OPTIONS
312	if [[ "$cpp_options" = "" ]]
313	then
314	printf "\n +++ WARNING: no cpp-options found in configuration file"
315	fi
316
317
318	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
319	if [[ "$remote_ip" != "" ]]
320	then
321
322	if [[ "$remote_username" = "" ]]
323	then
324	printf "\n +++ no user name given in configuration file"
325	locat=config_file; exit
326	fi
327
328	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
329	# THE $
330	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
331	line=`grep %remote_source_path $config_file`
332	if [[ "$line" != "" ]]
333	then
334	remote_source_path=`echo $line \| cut -d" " -s -f2`
335	else
336	line=`grep %source_path $config_file`
337	remote_source_path=`echo $line \| cut -d" " -s -f2`
338	fi
339
340	line=`grep %base_directory $config_file`
341	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
342
343	else
344
345	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
346
347	fi
348
349
350	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
351	global_revision=`svnversion $source_path 2>/dev/null`
352	global_revision="Rev: $global_revision"
353
354
355	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
356	if [[ $silent = false ]]
357	then
358	calltime=$(date)
359	printf "\n"
360	printf "#------------------------------------------------------------------------# \n"
361	printf "\| %-40s%30s \| \n" "$version" "$calltime"
362	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
363	printf "\| \| \n"
364	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
365	column2=$(echo $config_file \| cut -c1-57 )
366	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
367	line=$(echo "$config_file" \| cut -c58-)
368	while [[ "$line" != "" ]]
369	do
370	column1=""
371	column2=$(echo $line \| cut -c1-57 )
372	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
373	line=$(echo "$line" \| cut -c58-)
374	done
375	column2=$(echo $makefile \| cut -c1-57 )
376	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
377	line=$(echo "$makefile" \| cut -c58-)
378	while [[ "$line" != "" ]]
379	do
380	column1=""
381	column2=$(echo $line \| cut -c1-57 )
382	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
383	line=$(echo "$line" \| cut -c58-)
384	done
385	column2=$(echo $source_path \| cut -c1-57 )
386	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
387	line=$(echo "$source_path" \| cut -c58-)
388	while [[ "$line" != "" ]]
389	do
390	column1=""
391	column2=$(echo $line \| cut -c1-57 )
392	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
393	line=$(echo "$line" \| cut -c58-)
394	done
395	printf "\| \| \n"
396
397	if [[ "$remote_ip" != "" ]]
398	then
399	column2="$configuration_identifier"
400	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
401	column2=$(echo "$make_depository" \| cut -c1-50 )
402	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
403	else
404	column2="$configuration_identifier"
405	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
406	column2=$(echo "$make_depository" \| cut -c1-50 )
407	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
408	fi
409	line=$(echo "$make_depository" \| cut -c51-)
410	while [[ "$line" != "" ]]
411	do
412	column1=""
413	column2=$(echo "$line" \| cut -c1-50 )
414	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
415	line=$(echo "$line" \| cut -c51-)
416	done
417
418	if [[ "$remote_ip" != "" ]]
419	then
420	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
421	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
422	else
423	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
424	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
425	fi
426
427	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
428	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
429
430	if [[ "$make_options" != "" ]]
431	then
432	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
433	fi
434	column2=$(echo "$cpp_options" \| cut -c1-50 )
435	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
436	line=$(echo "$cpp_options" \| cut -c51-)
437	while [[ "$line" != "" ]]
438	do
439	column1=""
440	column2=$(echo "$line" \| cut -c1-50 )
441	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
442	line=$(echo "$line" \| cut -c51-)
443	done
444	column2=$(echo "$compiler_options" \| cut -c1-50 )
445	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
446	line=$(echo "$compiler_options" \| cut -c51-)
447	while [[ "$line" != "" ]]
448	do
449	column1=""
450	column2=$(echo "$line" \| cut -c1-50 )
451	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
452	line=$(echo "$line" \| cut -c51-)
453	done
454	column2=$(echo "$linker_options" \| cut -c1-50 )
455	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
456	line=$(echo "$linker_options" \| cut -c51-)
457	while [[ "$line" != "" ]]
458	do
459	column1=""
460	column2=$(echo "$line" \| cut -c1-50 )
461	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
462	line=$(echo "$line" \| cut -c51-)
463	done
464	if [[ "$login_init_cmd" != "" ]]
465	then
466	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
467	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
468	line=$(echo "$login_init_cmd" \| cut -c51-)
469	while [[ "$line" != "" ]]
470	do
471	column1=""
472	column2=$(echo "$line" \| cut -c1-50 )
473	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
474	line=$(echo "$line" \| cut -c51-)
475	done
476	fi
477	if [[ "$module_commands" != "" ]]
478	then
479	column2=$(echo "$module_commands" \| cut -c1-50 )
480	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
481	line=$(echo "$module_commands" \| cut -c51-)
482	while [[ "$line" != "" ]]
483	do
484	column1=""
485	column2=$(echo "$line" \| cut -c1-50 )
486	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
487	line=$(echo "$line" \| cut -c51-)
488	done
489	fi
490	printf "#------------------------------------------------------------------------# \n"
491
492	answer=dummy
493	printf "\n"
494	while [[ "$answer" != y && "$answer" != Y && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
495	do
496	printf " >>> continue (y(es)/a(bort)) ? "
497	read answer
498	done
499	if [[ $answer = a \|\| $answer = A ]]
500	then
501	locat=user_abort; exit
502	fi
503	fi
504
505
506	# TAR THE SOURCES AND MAKEFILES
507	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
508	# THEM TOO
509	if [[ $silent = false ]]
510	then
511	printf "\n\n *** tar of makefile and source files in"
512	printf "\n $source_path\n"
513	fi
514	cd $source_path
515	cp -p ../UTIL/combine_plot_fields.f90 .
516	cp -p ../UTIL/compare_palm_logs.f90 .
517	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
518	cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
519	cp -p ../UTIL/inifor/src/inifor*f90 .
520	cp -p ../UTIL/Makefile_utilities .
521	tar -cf ${program_name}_sources.tar Makefile* *.$suf
522	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities surface_output_to_vtk.f90 inifor*f90
523
524
525	# MAKE ON REMOTE HOST
526	if [[ "$remote_ip" != "" ]]
527	then
528
529	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
530	if [[ "$run_identifier" = "" ]]
531	then
532
533	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
534	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
535	if [[ $silent = false ]]
536	then
537	echo " "
538	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
539	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
540	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
541	else
542	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
543	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
544	fi
545
546
547
548
549	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
550	if [[ $silent = false ]]
551	then
552	echo " *** untar previous update on remote host, if existing"
553	fi
554	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
555
556
557	# UNTAR CURRENT SOURCES ON REMOTE HOST
558	if [[ $silent = false ]]
559	then
560	echo " *** untar current sources on remote host"
561	fi
562	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
563
564
565	# CREATE INIT AND MODULE COAMMNDS
566	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
567	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
568
569
570	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
571	if [[ $silent = false ]]
572	then
573	echo " "
574	echo " *** creating utilities on remote host"
575	fi
576	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
577	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>/dev/null \| tee ${configuration_identifier}_last_make_protocol
578	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
579
580	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
581	then
582	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
583	printf "\n for host configuration \"$configuration_identifier\" "
584	if [[ $silent = false ]]
585	then
586	answer=dummy
587	printf "\n"
588	while [[ "$answer" != c && "$answer" != k ]]
589	do
590	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
591	read answer
592	if [[ "$answer" = l ]]
593	then
594	more ${configuration_identifier}_last_make_protocol
595	fi
596	done
597	if [[ $answer = k ]]
598	then
599	locat=user_abort; exit
600	fi
601	else
602	# ABORT ANYWAY
603	locat=user_abort; exit
604	fi
605	fi
606
607	# NOW COMPILE THE PALM CODE
608	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
609	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
610	# MAY E.G. MISS THE COMPILER-PATHS)
611	if [[ $silent = false ]]
612	then
613	echo " "
614	echo " *** compile PALM sources on remote host"
615	fi
616	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
617	### echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
618	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
619
620	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
621	then
622	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
623	if [[ $silent = false ]]
624	then
625	answer=dummy
626	printf "\n"
627	while [[ "$answer" != c && "$answer" != k ]]
628	do
629	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
630	read answer
631	if [[ "$answer" = l ]]
632	then
633	more ${configuration_identifier}_last_make_protocol
634	fi
635	done
636	if [[ $answer = k ]]
637	then
638	locat=user_abort; exit
639	fi
640	else
641	# ABORT ANYWAY
642	locat=user_abort; exit
643	fi
644	fi
645
646	# TAR UPDATED VERSION ON THE REMOTE HOST
647	if [[ $silent = false ]]
648	then
649	printf "\n *** tar update on remote host ..."
650	fi
651	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
652
653
654	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
655	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
656	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
657	elif [[ "$run_identifier" != "" ]]
658	then
659
660	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
661	# AND ASK, IF THEY SHALL BE USED
662	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
663	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
664	then
665	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
666	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
667	printf "\n will be used!"
668	exit
669	fi
670
671	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
672	if [[ $silent = false ]]
673	then
674	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
675	fi
676	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
677
678
679	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
680	if [[ $silent = false ]]
681	then
682	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
683	printf "\n to $sources_for_run_catalog on remote host \n"
684	fi
685	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
686
687
688	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
689	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
690	then
691
692	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
693	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
694	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
695	if [[ $silent = false ]]
696	then
697	echo " *** execute \"make\" on remote host"
698	fi
699	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
700
701	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
702	then
703	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
704	if [[ $silent = false ]]
705	then
706	answer=dummy
707	printf "\n"
708	while [[ "$answer" != c && "$answer" != k ]]
709	do
710	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
711	read answer
712	if [[ "$answer" = l ]]
713	then
714	more ${configuration_identifier}_last_make_protocol
715	fi
716	done
717	if [[ $answer = k ]]
718	then
719	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
720	locat=user_abort; exit
721	fi
722	else
723	# ABORT ANYWAY
724	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
725	locat=user_abort; exit
726	fi
727	fi
728
729	else
730
731	echo " *** nothing to compile for this run"
732
733	fi
734
735	fi
736
737	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
738
739
740	# MAKE ON LOCAL HOST
741	else
742
743
744	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
745	# LOCAL HOST
746	if [[ "$run_identifier" = "" ]]
747	then
748
749	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
750	if [[ "$login_init_cmd" != "" ]]
751	then
752	$login_init_cmd
753	fi
754
755	if [[ "$module_commands" != "" ]]
756	then
757	$module_commands
758	fi
759
760
761	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
762	eval make_depository=$make_depository
763	if [[ ! -d $make_depository ]]
764	then
765	if mkdir -p $make_depository
766	then
767	if [[ $silent = false ]]
768	then
769	printf "\n\n *** directory for local make depository:"
770	printf "\n $make_depository"
771	printf "\n was created\n"
772	fi
773	else
774	printf "\n +++ directory for local make depository:"
775	printf "\n $make_depository"
776	printf "\n cannot be created"
777	locat=local_depository; exit
778	fi
779	fi
780
781	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
782	if [[ $silent = false ]]
783	then
784	echo " "
785	echo " *** untar current source sources on local host in"
786	echo " $make_depository"
787	fi
788	cd $make_depository
789	cp $source_path/${program_name}_sources.tar .
790	tar xf ${program_name}_sources.tar
791
792
793	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
794	if [[ $silent = false ]]
795	then
796	echo " "
797	echo " *** creating utilities on local host"
798	fi
799	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
800
801	if [[ ${PIPESTATUS[0]} != 0 ]]
802	then
803	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
804	if [[ $silent = false ]]
805	then
806	answer=dummy
807	printf "\n"
808	while [[ "$answer" != c && "$answer" != k ]]
809	do
810	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
811	read answer
812	if [[ "$answer" = l ]]
813	then
814	more ${configuration_identifier}_last_make_protocol
815	fi
816	done
817	if [[ $answer = k ]]
818	then
819	locat=user_abort; exit
820	fi
821	else
822	# ABORT ANYWAY
823	locat=user_abort; exit
824	fi
825	else
826	cp agent_preprocessing $source_path/../SCRIPTS/.
827	cp inifor $source_path/../SCRIPTS/.
828	fi
829
830
831	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
832	if [[ $silent = false ]]
833	then
834	echo " "
835	echo " *** compile PALM sources on local host"
836	fi
837
838	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
839
840	if [[ ${PIPESTATUS[0]} != 0 ]]
841	then
842	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
843	if [[ $silent = false ]]
844	then
845	answer=dummy
846	printf "\n"
847	while [[ "$answer" != c && "$answer" != k ]]
848	do
849	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
850	read answer
851	if [[ "$answer" = l ]]
852	then
853	more ${configuration_identifier}_last_make_protocol
854	fi
855	done
856	if [[ $answer = k ]]
857	then
858	locat=user_abort; exit
859	fi
860	else
861	# ABORT ANYWAY
862	locat=user_abort; exit
863	fi
864	fi
865
866
867	# TAR NEW VERSION ON LOCAL HOST
868	if [[ $silent = false ]]
869	then
870	printf "\n *** tar update on local host ..."
871	fi
872	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
873
874	else
875
876	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
877	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
878	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
879
880	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
881	# AND ASK, IF THEY SHALL BE USED
882	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
883	then
884	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
885	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
886	printf "\n will be used!"
887	exit
888	fi
889
890	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
891	if [[ ! -d ${make_depository} ]]
892	then
893	printf "\n +++ directory for local make depository:"
894	printf "\n $make_depository"
895	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
896	locat=make_depository; exit
897	fi
898
899
900	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
901	if [[ $silent = false ]]
902	then
903	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
904	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
905	fi
906	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
907	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
908	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
909	cd $fast_io_catalog/${sources_for_run_catalog}
910	tar xf ${program_name}_current_version.tar
911
912
913	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
914	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
915	if [[ $silent = false ]]
916	then
917	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
918	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
919	fi
920	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
921
922
923	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
924	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
925	then
926
927	if [[ $silent = false ]]
928	then
929	echo " *** execute \"make\" on local host"
930	fi
931	[[ "$login_init_cmd" != "" ]] && $login_init_cmd
932	[[ "$module_commands" != "" ]] && $module_commands
933
934	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
935
936	if [[ ${PIPESTATUS[0]} != 0 ]]
937	then
938
939	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
940	if [[ $silent = false ]]
941	then
942	answer=dummy
943	printf "\n"
944	while [[ "$answer" != c && "$answer" != k ]]
945	do
946	printf " >>> continue / kill palmbuild (c/k) ? "
947	read answer
948	done
949	if [[ $answer = k ]]
950	then
951	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
952	locat=user_abort; exit
953	fi
954	else
955	# ABORT ANYWAY
956	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
957	locat=user_abort; exit
958	fi
959	fi
960
961	else
962
963	echo " *** nothing to compile for this run"
964
965	fi
966
967	fi
968	fi

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