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source: palm/trunk/SCRIPTS/palmbuild @ 3690

Last change on this file since 3690 was 3549, checked in by raasch, 6 years ago
ssh-call for submitting batch jobs on remote systems modified to avoid output of login messages on specific systems, ssh-calls for compilations on remote systems modified to avoid output of login messages on specific systems, english translation of german comments / variable names
Property svn:executable set to ``* Property svn:keywords set to `Id Rev`
File size: 34.2 KB

Line
1	#!/bin/bash
2
3	# palmbuild - script for compiling the PALM code and its utility programs
4
5	#------------------------------------------------------------------------------#
6	# This file is part of the PALM model system.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 2017-2018 Leibniz Universitaet Hannover
20	#------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: palmbuild 3549 2018-11-21 15:44:44Z knoop $
29	# ssh-calls for compilations on remote systems modified to avoid output
30	# of login messages on specific systems
31	#
32	# 3534 2018-11-19 15:35:16Z raasch
33	# build of inifor added,
34	# ssh-calls rearranged to avoid output of system/user-profile messages
35	#
36	# 3523 2018-11-13 16:09:31Z suehring
37	# Enable compilation of post-processing tool for surface output - interface
38	# for posix conform sytemcalls is implemented.
39	#
40	# 3499 2018-11-07 10:55:15Z suehring
41	# Temporarily avoid compilation of post-processing tool for surface output
42	# until a workaround for compiler-specific intrinsic functions is found.
43	#
44	# 3494 2018-11-06 14:51:27Z suehring
45	# Add tool for surface-output post-processing
46	#
47	# 3455 2018-10-30 14:12:31Z raasch
48	# options -h and -d renamed -c and -r, respectively
49	#
50	# 3312 2018-10-06 14:15:46Z knoop
51	# "host identifier" in header output renamed "config. identifier",
52	# host_configuration renamed configuration_identifier,
53	# jobname renamed run_identifier
54	# header output of PALM code revision,
55	# options -m, -s, and -S removed
56	#
57	# 3210 2018-08-28 07:31:13Z sward
58	# Bugfix: agent_preprocessing stays in MAKE_DEPOSITORY after compilation
59	#
60	# 3208 2018-08-27 13:10:50Z sward
61	# Added building of agent_preprocessing
62	#
63	# 3033 2018-05-23 15:26:19Z raasch
64	# "fname" renamed to "jobname"
65	#
66	# 2718 2018-01-02 08:49:38Z maronga
67	# Corrected "Former revisions" section
68	#
69	# 2696 2017-12-14 17:12:51Z kanani
70	# Change in file header (GPL part)
71	#
72	# 2566 2017-10-20 08:50:47Z raasch
73	# informative messages switched of almost completely in silent mode
74	# two header blocks merged into one
75	#
76	# 2506 2017-09-29 08:30:37Z raasch
77	# option -V added to check for an existing SOURCES_FOR_RUN_... folder
78	# host configuration added to SOURCES_FOR_RUN_... folder name
79	# SOURCES_FOR_RUN_... folder is deleted in case of compilation errors
80	# host_identifier renamed host_configuration
81	#
82	# 2500 2017-09-25 11:10:03Z raasch
83	# bugfix for r2492
84	#
85	# 2492 2017-09-21 14:18:48Z raasch
86	# ask for compilation, if SOURCES_FOR_RUN_... exists
87	#
88	# 2487 2017-09-21 11:30:10Z raasch
89	# bugfix: abort in case of compiling/linking errors in silent mode
90	#
91	# 2422 2017-09-08 08:25:41Z raasch
92	# initial revision
93	#
94	#------------------------------------------------------------------------------#
95	# palmbuild - script for compiling the PALM code and its utility programs
96	#
97	# Procedure to compile code on local and remote hosts using the
98	# make-mechanism. The source code must be provided on the local host.
99	#
100	# @note This script does not work on MAC OS
101	#------------------------------------------------------------------------------#
102
103
104	# VARIABLE DECLARATIONS + DEFAULT VALUES
105	calltime=""
106	column1=""
107	column2=""
108	configuration_identifier=default
109	global_revision=""
110	locat=normal
111	makefile=""
112	make_options=""
113	module_commands=""
114	program_name=palm
115	remote_ip=""
116	silent=false
117	ssh_key=""
118	suf=f90
119	use_existing_sources_folder=false
120	version="palmbuild 1.0 Rev$Rev: 3549 $"
121	working_directory=`pwd`
122
123
124	# ERROR HANDLING IN CASE OF EXIT
125	trap 'rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
126	if [[ $locat != normal && $locat != control_c ]]
127	then
128	printf "\n\n+++ palmbuild crashed \n\n"
129	exit 1
130	elif [[ $locat != normal ]]
131	then
132	printf "\n+++ palmbuild killed by \"^C\" \n\n"
133	exit 2
134	else
135	if [[ $silent = false ]]
136	then
137	printf "\n --> palmbuild finished\n\n"
138	fi
139	exit 0
140	fi' exit
141
142
143	# ACTIONS IN CASE OF TERMINAL-BREAK (CONTROL-C):
144	trap 'locat=control_c
145	exit 1
146	' 2
147
148
149
150	# READ SHELLSCRIPT-OPTIONS
151	while getopts :c:r:uvV option
152	do
153	case $option in
154	(c) configuration_identifier=$OPTARG;;
155	(r) run_identifier=$OPTARG;;
156	(v) silent=true;;
157	(V) use_existing_sources_folder=true;;
158	(\?) printf "\n +++ unknown option $OPTARG \n";
159	locat=parameter; exit;;
160	esac
161	done
162
163
164	# BUILD THE CONFIGURATION-FILE NAME AND THE SOURCES_FOR_RUN-FOLDER NAME
165	config_file=.palm.config.$configuration_identifier
166	sources_for_run_catalog=SOURCES_FOR_RUN_${configuration_identifier}_$run_identifier
167
168
169	# CHECK, IF CONFIGURATION-FILE EXISTS
170	if [[ ! -f $config_file ]]
171	then
172	printf "\n +++ configuration file: "
173	printf "\n $config_file"
174	printf "\n does not exist"
175	locat=configuration; exit
176	fi
177
178
179	# ### is this really required?
180	config_file=$PWD/$config_file
181
182
183	# READ VARIABLE SETTINGS FROM CONFIG FILE LINE BY LINE
184	while read line
185	do
186
187	# FIRST REPLACE ENVIRONMENT-VARIABLES BY THEIR RESPECTIVE VALUES
188	eval line=\"$line\"
189
190
191	# INTERPRET THE LINE
192	if [[ "$(echo $line)" = "" ]]
193	then
194
195	# EMPTY LINE, NO ACTION
196	continue
197
198	elif [[ "$(echo $line \| cut -c1)" = "#" ]]
199	then
200
201	# LINE IS A COMMENT LINE
202	continue
203
204	elif [[ "$(echo $line \| cut -c1)" = "%" ]]
205	then
206
207	# LINE DEFINES AN ENVIRONMENT-VARIABLE
208	var=`echo $line \| cut -d" " -s -f1 \| cut -c2-`
209	value=`echo $line \| cut -d" " -s -f2-`
210
211	# REPLACE ":" BY " " IN COMPILER- CPP- OR LINKER-OPTIONS,
212	# "::" IS REPLACED BY ":".
213	#value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
214
215
216	# VALUE FROM THE CONFIGURATION-FILE IS ASSIGNED TO THE
217	# ENVIRONMENT-VARIABLE, BUT ONLY IF NO VALUE HAS BEEN ALREADY
218	# ASSIGNED WITHIN THIS SCRIPT (E.G. BY SCRIPT-OPTIONS).
219	# NON-ASSIGNED VARIABLES HAVE VALUE "" OR 0 (IN CASE OF INTEGER).
220	# HENCE THE GENERAL RULE IS: SCRIPT-OPTION OVERWRITES THE
221	# CONFIGURATION-FILE.
222	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
223	then
224	eval export $var="\$value"
225
226	# TERMINAL OUTPUT OF ENVIRONMENT-VARIABLES, IF TRACEBACK IS SWITCHED on
227	if [[ $do_trace = true ]]
228	then
229	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
230	fi
231	fi
232
233	else
234
235	# SKIP ALL OTHER LINES
236	continue
237
238	fi
239
240	done < $config_file
241
242
243	# CHECK, IF THE BASE DIRECTORY PATH HAS BEEN GIVEN
244	if [[ "$base_directory" = "" ]]
245	then
246	printf "\n +++ no base directory found in configuration file"
247	locat=config_file; exit
248	else
249	if [[ ! -d $base_directory ]]
250	then
251	printf "\n\n +++ base directory \"$base_directory\" "
252	printf "\n does not exist"
253	locat=source_path; exit
254	fi
255	fi
256
257
258	# CHECK SOURCE-CODE PATH
259	if [[ "$source_path" = "" ]]
260	then
261	printf "\n +++ no source path found in configuration file"
262	locat=config_file; exit
263	else
264	if [[ ! -d $source_path ]]
265	then
266	printf "\n\n +++ source path \"$source_path\" "
267	printf "\n does not exist"
268	locat=source_path; exit
269	fi
270	fi
271
272
273	# CHECK MAKEFILE
274	makefile=$source_path/Makefile
275	if [[ ! -f $makefile ]]
276	then
277	printf "\n +++ makefile: "
278	printf "\n $makefile"
279	printf "\n does not exist"
280	locat=makefile; exit
281	fi
282
283
284	# CHECK COMPILERNAME
285	if [[ "$compiler_name" = "" ]]
286	then
287	printf "\n +++ no compiler name found in configuration file"
288	locat=config_file; exit
289	fi
290
291
292	# CHECK SERIAL COMPILERNAME
293	if [[ "$compiler_name_ser" = "" ]]
294	then
295	printf "\n +++ no compiler name for serial compilation in configuration file"
296	locat=config_file; exit
297	fi
298
299
300	# DETERMINE SSH-KEY TO BE USED
301	if [[ "$ssh_key" != "" ]]
302	then
303	ssh_key="-i $HOME/.ssh/`echo $line \| cut -d" " -s -f2`"
304	fi
305
306
307	#CHECK CPP-OPTIONS
308	if [[ "$cpp_options" = "" ]]
309	then
310	printf "\n +++ WARNING: no cpp-options found in configuration file"
311	fi
312
313
314	# CHECK SETTINGS IN CASE OF COMPILING ON REMOTE MACHINE
315	if [[ "$remote_ip" != "" ]]
316	then
317
318	if [[ "$remote_username" = "" ]]
319	then
320	printf "\n +++ no user name given in configuration file"
321	locat=config_file; exit
322	fi
323
324	# GET SOURCE AND DEPOSITORY PATH ON THE REMOTE MACHINE WITHOUT EVALUATING
325	# THE $
326	# IF NOT GIVEN, USE THE LOCAL SOURCE AND DEPOSITORY PATH
327	line=`grep %remote_source_path $config_file`
328	if [[ "$line" != "" ]]
329	then
330	remote_source_path=`echo $line \| cut -d" " -s -f2`
331	else
332	line=`grep %source_path $config_file`
333	remote_source_path=`echo $line \| cut -d" " -s -f2`
334	fi
335
336	line=`grep %base_directory $config_file`
337	make_depository=`echo $line \| cut -d" " -s -f2`/MAKE_DEPOSITORY_${configuration_identifier}
338
339	else
340
341	make_depository=${base_directory}/MAKE_DEPOSITORY_${configuration_identifier}
342
343	fi
344
345
346	# GET THE GLOBAL REVISION-NUMBER OF THE SVN-REPOSITORY
347	global_revision=`svnversion $source_path 2>/dev/null`
348	global_revision="Rev: $global_revision"
349
350
351	# HEADER-OUTPUT (PART1: MESSAGES CONCERNING THE LOCAL HOST)
352	if [[ $silent = false ]]
353	then
354	calltime=$(date)
355	printf "\n"
356	printf "#------------------------------------------------------------------------# \n"
357	printf "\| %-40s%30s \| \n" "$version" "$calltime"
358	printf "\| %-40s%30s \| \n" "PALM code $global_revision" " "
359	printf "\| \| \n"
360	printf "\| %-13s%-57s \| \n" "called on:" "$(hostname) (IP:$local_ip)"
361	column2=$(echo $config_file \| cut -c1-57 )
362	printf "\| %-13s%-57s \| \n" "config file:" "$column2"
363	line=$(echo "$config_file" \| cut -c58-)
364	while [[ "$line" != "" ]]
365	do
366	column1=""
367	column2=$(echo $line \| cut -c1-57 )
368	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
369	line=$(echo "$line" \| cut -c58-)
370	done
371	column2=$(echo $makefile \| cut -c1-57 )
372	printf "\| %-13s%-57s \| \n" "makefile:" "$column2"
373	line=$(echo "$makefile" \| cut -c58-)
374	while [[ "$line" != "" ]]
375	do
376	column1=""
377	column2=$(echo $line \| cut -c1-57 )
378	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
379	line=$(echo "$line" \| cut -c58-)
380	done
381	column2=$(echo $source_path \| cut -c1-57 )
382	printf "\| %-13s%-57s \| \n" "source path:" "$column2"
383	line=$(echo "$source_path" \| cut -c58-)
384	while [[ "$line" != "" ]]
385	do
386	column1=""
387	column2=$(echo $line \| cut -c1-57 )
388	printf "\| %-13s%-57s \| \n" "$column1" "$column2"
389	line=$(echo "$line" \| cut -c58-)
390	done
391	printf "\| \| \n"
392
393	if [[ "$remote_ip" != "" ]]
394	then
395	column2="$configuration_identifier"
396	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
397	column2=$(echo "$make_depository" \| cut -c1-50 )
398	printf "\| %-20s%-50s \| \n" "remote depository:" "$column2"
399	else
400	column2="$configuration_identifier"
401	printf "\| %-20s%-50s \| \n" "config. identifier:" "$column2"
402	column2=$(echo "$make_depository" \| cut -c1-50 )
403	printf "\| %-20s%-50s \| \n" "local depository:" "$column2"
404	fi
405	line=$(echo "$make_depository" \| cut -c51-)
406	while [[ "$line" != "" ]]
407	do
408	column1=""
409	column2=$(echo "$line" \| cut -c1-50 )
410	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
411	line=$(echo "$line" \| cut -c51-)
412	done
413
414	if [[ "$remote_ip" != "" ]]
415	then
416	printf "\| %-20s%-50s \| \n" "remote username:" "$remote_username"
417	printf "\| %-20s%-50s \| \n" "remote address:" "$remote_ip"
418	else
419	printf "\| %-20s%-50s \| \n" "username:" "$local_username"
420	printf "\| %-20s%-50s \| \n" "address:" "$local_ip"
421	fi
422
423	printf "\| %-20s%-50s \| \n" "compiler:" "$compiler_name"
424	printf "\| %-20s%-50s \| \n" "serial compiler:" "$compiler_name_ser"
425
426	if [[ "$make_options" != "" ]]
427	then
428	printf "\| %-20s%-50s \| \n" "make options:" "$make_options"
429	fi
430	column2=$(echo "$cpp_options" \| cut -c1-50 )
431	printf "\| %-20s%-50s \| \n" "cpp options:" "$column2"
432	line=$(echo "$cpp_options" \| cut -c51-)
433	while [[ "$line" != "" ]]
434	do
435	column1=""
436	column2=$(echo "$line" \| cut -c1-50 )
437	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
438	line=$(echo "$line" \| cut -c51-)
439	done
440	column2=$(echo "$compiler_options" \| cut -c1-50 )
441	printf "\| %-20s%-50s \| \n" "compiler options:" "$column2"
442	line=$(echo "$compiler_options" \| cut -c51-)
443	while [[ "$line" != "" ]]
444	do
445	column1=""
446	column2=$(echo "$line" \| cut -c1-50 )
447	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
448	line=$(echo "$line" \| cut -c51-)
449	done
450	column2=$(echo "$linker_options" \| cut -c1-50 )
451	printf "\| %-20s%-50s \| \n" "linker options:" "$column2"
452	line=$(echo "$linker_options" \| cut -c51-)
453	while [[ "$line" != "" ]]
454	do
455	column1=""
456	column2=$(echo "$line" \| cut -c1-50 )
457	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
458	line=$(echo "$line" \| cut -c51-)
459	done
460	if [[ "$login_init_cmd" != "" ]]
461	then
462	column2=$(echo "$login_init_cmd" \| cut -c1-50 )
463	printf "\| %-20s%-50s \| \n" "login init command:" "$column2"
464	line=$(echo "$login_init_cmd" \| cut -c51-)
465	while [[ "$line" != "" ]]
466	do
467	column1=""
468	column2=$(echo "$line" \| cut -c1-50 )
469	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
470	line=$(echo "$line" \| cut -c51-)
471	done
472	fi
473	if [[ "$module_commands" != "" ]]
474	then
475	column2=$(echo "$module_commands" \| cut -c1-50 )
476	printf "\| %-20s%-50s \| \n" "module command(s):" "$column2"
477	line=$(echo "$module_commands" \| cut -c51-)
478	while [[ "$line" != "" ]]
479	do
480	column1=""
481	column2=$(echo "$line" \| cut -c1-50 )
482	printf "\| %-20s%-50s \| \n" "$column1" "$column2"
483	line=$(echo "$line" \| cut -c51-)
484	done
485	fi
486	printf "#------------------------------------------------------------------------# \n"
487
488	answer=dummy
489	printf "\n"
490	while [[ "$answer" != y && "$answer" != Y && "$answer" != s && "$answer" != S && "$answer" != a && "$answer" != A ]]
491	do
492	printf " >>> continue (y(es)/a(bort)) ? "
493	read answer
494	done
495	if [[ $answer = a \|\| $answer = A ]]
496	then
497	locat=user_abort; exit
498	fi
499	fi
500
501
502	# TAR THE SOURCES AND MAKEFILES
503	# UTILITIES ARE TEMPORARILY COPIED TO THE SOURCE DIRECTORY IN ORDER TO TAR
504	# THEM TOO
505	if [[ $silent = false ]]
506	then
507	printf "\n\n *** tar of makefile and source files in"
508	printf "\n $source_path\n"
509	fi
510	cd $source_path
511	cp -p ../UTIL/combine_plot_fields.f90 .
512	cp -p ../UTIL/compare_palm_logs.f90 .
513	cp -p ../UTIL/agent_preprocessing/agent_preprocessing.f90 .
514	cp -p ../UTIL/surface_output_processing/surface_output_to_vtk.f90 .
515	cp -p ../UTIL/inifor/src/inifor*f90 .
516	cp -p ../UTIL/Makefile_utilities .
517	tar -cf ${program_name}_sources.tar Makefile* *.$suf
518	rm combine_plot_fields.f90 compare_palm_logs.f90 agent_preprocessing.f90 Makefile_utilities surface_output_to_vtk.f90 inifor*f90
519
520
521	# MAKE ON REMOTE HOST
522	if [[ "$remote_ip" != "" ]]
523	then
524
525	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_...
526	if [[ "$run_identifier" = "" ]]
527	then
528
529	# COPY CURRENT SOURCE CODE TO SOURCE-CODE DIRECTORY ON THE REMOTE HOST
530	# CREATE THIS DIRECTORY, IF IT DOES NOT EXIST
531	if [[ $silent = false ]]
532	then
533	echo " "
534	echo " *** copying \"${program_name}_sources.tar\" to \"${remote_ip}:${make_depository}/\" "
535	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && (echo \" *** ${make_depository} will be created\"; mkdir -p ${make_depository})" 2>&1
536	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar
537	else
538	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ ! -d ${make_depository} ]] && mkdir -p ${make_depository}" 2>&1
539	scp $ssh_key ${source_path}/${program_name}_sources.tar ${remote_username}@${remote_ip}:${make_depository}/${program_name}_sources.tar > /dev/null
540	fi
541
542
543
544
545	# UNTAR PREVIOUS UPDATE ON REMOTE HOST, IF EXISTING
546	if [[ $silent = false ]]
547	then
548	echo " *** untar previous update on remote host, if existing"
549	fi
550	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; [[ -f ${program_name}_current_version.tar ]] && tar -xf ${program_name}_current_version.tar" 2>&1
551
552
553	# UNTAR CURRENT SOURCES ON REMOTE HOST
554	if [[ $silent = false ]]
555	then
556	echo " *** untar current sources on remote host"
557	fi
558	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; tar -xf ${program_name}_sources.tar" 2>&1
559
560
561	# CREATE INIT AND MODULE COAMMNDS
562	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
563	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
564
565
566	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
567	if [[ $silent = false ]]
568	then
569	echo " "
570	echo " *** creating utilities on remote host"
571	fi
572	make_call_string="make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
573	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>/dev/null \| tee ${configuration_identifier}_last_make_protocol
574	### ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
575
576	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
577	then
578	printf "\a\n +++ error(s) occurred during compiling or linking of utilities"
579	printf "\n for host configuration \"$configuration_identifier\" "
580	if [[ $silent = false ]]
581	then
582	answer=dummy
583	printf "\n"
584	while [[ "$answer" != c && "$answer" != k ]]
585	do
586	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
587	read answer
588	if [[ "$answer" = l ]]
589	then
590	more ${configuration_identifier}_last_make_protocol
591	fi
592	done
593	if [[ $answer = k ]]
594	then
595	locat=user_abort; exit
596	fi
597	else
598	# ABORT ANYWAY
599	locat=user_abort; exit
600	fi
601	fi
602
603	# NOW COMPILE THE PALM CODE
604	# COMMANDS WILL BE COMMUNICATED TO SSH VIA PIPE, SINCE THIS WAY THE SYSTEM- AND
605	# USER-PROFILES OF THE SHELL ARE COMPLETELY EXECUTED (OTHERWISE, MAKE
606	# MAY E.G. MISS THE COMPILER-PATHS)
607	if [[ $silent = false ]]
608	then
609	echo " "
610	echo " *** compile PALM sources on remote host"
611	fi
612	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
613	echo "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" \| ssh -q $ssh_key ${remote_username}@${remote_ip} 2>&1 \| tee ${configuration_identifier}_last_make_protocol
614	### ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${make_depository}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
615
616	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
617	then
618	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
619	if [[ $silent = false ]]
620	then
621	answer=dummy
622	printf "\n"
623	while [[ "$answer" != c && "$answer" != k ]]
624	do
625	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
626	read answer
627	if [[ "$answer" = l ]]
628	then
629	more ${configuration_identifier}_last_make_protocol
630	fi
631	done
632	if [[ $answer = k ]]
633	then
634	locat=user_abort; exit
635	fi
636	else
637	# ABORT ANYWAY
638	locat=user_abort; exit
639	fi
640	fi
641
642	# TAR UPDATED VERSION ON THE REMOTE HOST
643	if [[ $silent = false ]]
644	then
645	printf "\n *** tar update on remote host ..."
646	fi
647	ssh -q $ssh_key ${remote_username}@${remote_ip} "cd ${make_depository}; chmod u+w ; tar -cf ${program_name}_current_version.tar ${program_name} .f90 .o .mod *.x" 2>&1
648
649
650	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
651	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
652	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
653	elif [[ "$run_identifier" != "" ]]
654	then
655
656	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
657	# AND ASK, IF THEY SHALL BE USED
658	ssh -q $ssh_key ${remote_username}@${remote_ip} "[[ -d ${fast_io_catalog}/${sources_for_run_catalog} ]] && echo sources for run found" 2>&1 > ${configuration_identifier}_last_make_protocol
659	if [[ $(grep -c "sources for run found" ${configuration_identifier}_last_make_protocol) != 0 && $use_existing_sources_folder = true ]]
660	then
661	printf "\a\n *** compiled sources for run \"$run_identifier\" found on remote host in folder"
662	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
663	printf "\n will be used!"
664	exit
665	fi
666
667	# COPY MAKE DEPOSITORY ON REMOTE MACHINE TO SOURCES_FOR_RUN_...
668	if [[ $silent = false ]]
669	then
670	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on remote host to $sources_for_run_catalog \n"
671	fi
672	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}; mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}; cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}; cd ${fast_io_catalog}/${sources_for_run_catalog}; tar xf ${program_name}_current_version.tar" 2>&1
673
674
675	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_... ON THE REMOTE MACHINE
676	if [[ $silent = false ]]
677	then
678	printf "\n *** copy ${base_directory}/${sources_for_run_catalog}"
679	printf "\n to $sources_for_run_catalog on remote host \n"
680	fi
681	scp -q $ssh_key ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${remote_username}@${remote_ip}:${fast_io_catalog}/${sources_for_run_catalog}
682
683
684	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
685	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
686	then
687
688	make_call_string="make $make_options PROG=$program_name F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$compiler_options\" LDFLAGS=\"$linker_options\" "
689	[[ "$login_init_cmd" != "" ]] && login_init_cmd=${login_init_cmd}";"
690	[[ "$module_commands" != "" ]] && module_commands=${module_commands}";"
691	if [[ $silent = false ]]
692	then
693	echo " *** execute \"make\" on remote host"
694	fi
695	ssh -q $ssh_key ${remote_username}@${remote_ip} "$login_init_cmd $module_commands cd ${fast_io_catalog}/${sources_for_run_catalog}; echo $make_call_string > LAST_MAKE_CALL; chmod u+x LAST_MAKE_CALL; $make_call_string; [[ \$? != 0 ]] && echo MAKE_ERROR" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
696
697	if [[ $(grep -c MAKE_ERROR ${configuration_identifier}_last_make_protocol) != 0 ]]
698	then
699	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
700	if [[ $silent = false ]]
701	then
702	answer=dummy
703	printf "\n"
704	while [[ "$answer" != c && "$answer" != k ]]
705	do
706	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
707	read answer
708	if [[ "$answer" = l ]]
709	then
710	more ${configuration_identifier}_last_make_protocol
711	fi
712	done
713	if [[ $answer = k ]]
714	then
715	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
716	locat=user_abort; exit
717	fi
718	else
719	# ABORT ANYWAY
720	ssh -q $ssh_key ${remote_username}@${remote_ip} "rm -rf ${fast_io_catalog}/${sources_for_run_catalog}" 2>&1
721	locat=user_abort; exit
722	fi
723	fi
724
725	else
726
727	echo " *** nothing to compile for this run"
728
729	fi
730
731	fi
732
733	rm -rf ${source_path}/${configuration_identifier}_last_make_protocol
734
735
736	# MAKE ON LOCAL HOST
737	else
738
739
740	# NEXT IS THE BRANCH FOR CREATING THE MAKE_DEPOSITORY_... ON THE
741	# LOCAL HOST
742	if [[ "$run_identifier" = "" ]]
743	then
744
745	# SET THE ENVIRONMENT (EXECUTE INIT AND MODULE COMMANDS)
746	if [[ "$login_init_cmd" != "" ]]
747	then
748	$login_init_cmd
749	fi
750
751	if [[ "$module_commands" != "" ]]
752	then
753	$module_commands
754	fi
755
756
757	# CREATE MAKE-DEPOSITORY, IF IT DOES NOT EXIST
758	eval make_depository=$make_depository
759	if [[ ! -d $make_depository ]]
760	then
761	if mkdir -p $make_depository
762	then
763	if [[ $silent = false ]]
764	then
765	printf "\n\n *** directory for local make depository:"
766	printf "\n $make_depository"
767	printf "\n was created\n"
768	fi
769	else
770	printf "\n +++ directory for local make depository:"
771	printf "\n $make_depository"
772	printf "\n cannot be created"
773	locat=local_depository; exit
774	fi
775	fi
776
777	# COPY SOURCE-CODE FROM REPOSITORY TO MAKE-DEPOSITORY
778	if [[ $silent = false ]]
779	then
780	echo " "
781	echo " *** untar current source sources on local host in"
782	echo " $make_depository"
783	fi
784	cd $make_depository
785	cp $source_path/${program_name}_sources.tar .
786	tar xf ${program_name}_sources.tar
787
788
789	# FIRST CREATE EXECUTABLES FOR THE UTILITY ROUTINES
790	if [[ $silent = false ]]
791	then
792	echo " "
793	echo " *** creating utilities on local host"
794	fi
795	make -f Makefile_utilities $make_options F90=$compiler_name F90_SER=$compiler_name_ser COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" \| tee ${configuration_identifier}_last_make_protocol
796
797	if [[ ${PIPESTATUS[0]} != 0 ]]
798	then
799	printf "\a\n +++ error(s) occurred during compiling of the utilities for host configuration \"$configuration_identifier\" "
800	if [[ $silent = false ]]
801	then
802	answer=dummy
803	printf "\n"
804	while [[ "$answer" != c && "$answer" != k ]]
805	do
806	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
807	read answer
808	if [[ "$answer" = l ]]
809	then
810	more ${configuration_identifier}_last_make_protocol
811	fi
812	done
813	if [[ $answer = k ]]
814	then
815	locat=user_abort; exit
816	fi
817	else
818	# ABORT ANYWAY
819	locat=user_abort; exit
820	fi
821	else
822	cp agent_preprocessing $source_path/../SCRIPTS/.
823	cp inifor $source_path/../SCRIPTS/.
824	fi
825
826
827	# CALL MAKE ON LOCAL HOST USING THE OPTIONS DETERMINED FURTHER ABOVE
828	if [[ $silent = false ]]
829	then
830	echo " "
831	echo " *** compile PALM sources on local host"
832	fi
833
834	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options" 2>&1 \| tee ${configuration_identifier}_last_make_protocol
835
836	if [[ ${PIPESTATUS[0]} != 0 ]]
837	then
838	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
839	if [[ $silent = false ]]
840	then
841	answer=dummy
842	printf "\n"
843	while [[ "$answer" != c && "$answer" != k ]]
844	do
845	printf " >>> continue / list errors / kill palmbuild (c/l/k) ? "
846	read answer
847	if [[ "$answer" = l ]]
848	then
849	more ${configuration_identifier}_last_make_protocol
850	fi
851	done
852	if [[ $answer = k ]]
853	then
854	locat=user_abort; exit
855	fi
856	else
857	# ABORT ANYWAY
858	locat=user_abort; exit
859	fi
860	fi
861
862
863	# TAR NEW VERSION ON LOCAL HOST
864	if [[ $silent = false ]]
865	then
866	printf "\n *** tar update on local host ..."
867	fi
868	tar -cf ${program_name}_current_version.tar ${program_name} .$suf .o .mod .x
869
870	else
871
872	# NOW COMES THE BRANCH FOR CREATING THE EXECUTABLE FOR THE CURRENT RUN
873	# INCLUDING E.G. USER-INTERFACE ROUTINES. ALSO ADD OTHER UTILITY EXECUTABLES. EVERYTHING IS
874	# COLLECTED IN DIRECTORY SOURCES_FOR_RUN_...
875
876	# FIRST CHECK, IF COMPILED SOURCES FOR THIS RUN IDENTIFIER EXISTS
877	# AND ASK, IF THEY SHALL BE USED
878	if [[ -d ${fast_io_catalog}/${sources_for_run_catalog} && $use_existing_sources_folder = true ]]
879	then
880	printf "\a\n *** compiled sources for run \"$run_identifier\" found on local host in folder"
881	printf "\n ${fast_io_catalog}/${sources_for_run_catalog}"
882	printf "\n will be used!"
883	exit
884	fi
885
886	# SECOND CHECK, IF A DEPOSITORY EXISTS ON THE LOCAL MACHINE
887	if [[ ! -d ${make_depository} ]]
888	then
889	printf "\n +++ directory for local make depository:"
890	printf "\n $make_depository"
891	printf "\n not found. Please run \"palmbuild -c $configuration_identifier\" "
892	locat=make_depository; exit
893	fi
894
895
896	# COPY MAKE DEPOSITORY ON LOCAL MACHINE TO SOURCES_FOR_RUN_...
897	if [[ $silent = false ]]
898	then
899	printf "\n *** copy MAKE_DEPOSITORY_${configuration_identifier} on local host to "
900	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} \n"
901	fi
902	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
903	mkdir -p ${fast_io_catalog}/${sources_for_run_catalog}
904	cp ${make_depository}/${program_name}_current_version.tar ${fast_io_catalog}/${sources_for_run_catalog}
905	cd $fast_io_catalog/${sources_for_run_catalog}
906	tar xf ${program_name}_current_version.tar
907
908
909	# COPY CONTENTS OF SOURCES_FOR_RUN_... TO SOURCES_FOR_RUN_...
910	# IN THE FAST_IO_CATALOG ON THE LOCAL MACHINE
911	if [[ $silent = false ]]
912	then
913	printf "\n *** copy ${base_directory}/${sources_for_run_catalog} to"
914	printf "\n ${fast_io_catalog}/${sources_for_run_catalog} on local host \n"
915	fi
916	cp ${base_directory}/${sources_for_run_catalog}/{,.[!.]} ${fast_io_catalog}/${sources_for_run_catalog}
917
918
919	# CREATE EXECUTABLE FROM THE NEW/MODIFIED SOURCE FILES, IF THERE ARE ANY
920	if [[ $(ls -1 ${base_directory}/${sources_for_run_catalog}/ \| grep -c .$suf) != 0 ]]
921	then
922
923	if [[ $silent = false ]]
924	then
925	echo " *** execute \"make\" on local host"
926	fi
927	[[ "$login_init_cmd" != "" ]] && $login_init_cmd
928	[[ "$module_commands" != "" ]] && $module_commands
929
930	make $make_options PROG=$program_name F90=$compiler_name COPT="$cpp_options" F90FLAGS="$compiler_options" LDFLAGS="$linker_options"
931
932	if [[ ${PIPESTATUS[0]} != 0 ]]
933	then
934
935	printf "\a\n +++ error(s) occurred during compiling or linking for host configuration \"$configuration_identifier\" "
936	if [[ $silent = false ]]
937	then
938	answer=dummy
939	printf "\n"
940	while [[ "$answer" != c && "$answer" != k ]]
941	do
942	printf " >>> continue / kill palmbuild (c/k) ? "
943	read answer
944	done
945	if [[ $answer = k ]]
946	then
947	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
948	locat=user_abort; exit
949	fi
950	else
951	# ABORT ANYWAY
952	rm -rf ${fast_io_catalog}/${sources_for_run_catalog}
953	locat=user_abort; exit
954	fi
955	fi
956
957	else
958
959	echo " *** nothing to compile for this run"
960
961	fi
962
963	fi
964	fi

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