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source: palm/trunk/SCRIPTS/mrun @ 758

Last change on this file since 758 was 757, checked in by helmke, 13 years ago
mrun-adjustment of the path at IMUK
Property svn:keywords set to `Id Rev`
File size: 176.9 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 757 2011-08-29 11:00:28Z heinze $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix (.nc)
228	# 18/08/11 - Marcus - support for Linux OS with German locale
229	# - properly report hosts on general Linux clusters
230	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
231	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at IMUK
232
233
234	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
235
236	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
237	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
238	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
239
240	AddFilenames=""
241	additional_conditions=""
242	add_source_path=""
243	afname=""
244	archive_save=true
245	archive_system=none
246	compiler_name=""
247	cond1=""
248	cond2=""
249	config_file=.mrun.config
250	coupled_dist=""
251	coupled_mode="mpi1"
252	cpp_opts=""
253	cpp_options=""
254	cpumax=0
255	cpurest=0
256	delete_temporary_catalog=true
257	do_batch=false
258	do_compile=true
259	do_remote=false
260	do_stagein=true
261	do_stageout=true
262	do_trace=false
263	email_notification="none"
264	exclude=""
265	executable=""
266	execution_error=false
267	fimm=false
268	fname=test
269	fromhost=""
270	global_revision=""
271	group_number=none
272	host=""
273	host_file=""
274	hp=""
275	ignore_archive_error=false
276	input_list=""
277	interpreted_config_file=""
278	job_catalog="~/job_queue"
279	job_on_file=""
280	keep_data_from_previous_run=false
281	link_local_input=false
282	link_local_output=false
283	localhost_realname=$(hostname)
284	local_compile=false
285	local_dvrserver_running=.FALSE.
286	locat=normal
287	mainprog=""
288	makefile=""
289	mc=$0
290	while [[ $(echo $mc \| grep -c "/") != 0 ]]
291	do
292	mc=`echo $mc \| cut -f2- -d"/"`
293	done
294	module_calls=""
295	mrun_script_name=$mc
296	netcdf_inc=""
297	netcdf_lib=""
298	netcdf_support=false
299	node_usage=default
300	numprocs=""
301	numprocs_atmos=0
302	numprocs_ocean=0
303	OOPT=""
304	openmp=false
305	output_list=""
306	package_list=""
307	punkte="..........................................................."
308	queue=none
309	read_from_config=""
310	restart_run=false
311	if [[ `hostname` = rte10 ]]
312	then
313	return_addres=133.5.185.60
314	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
315	elif [[ `hostname` = climate0 ]]
316	then
317	return_addres=165.132.26.68
318	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
319	else
320	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
321	fi
322	return_password=""
323	return_username=$LOGNAME
324	remotecall=false
325	remote_username=""
326	run_coupled_model=false
327	run_mode=""
328	scirocco=false
329	store_on_archive_system=false
330	striche=" ----------------------------------------------------------------------------"
331	silent=false
332	source_list=""
333	source_path=SOURCE
334	tasks_per_node=""
335	threads_per_task=1
336	tmpcreate=false
337	tmp_data_catalog=""
338	transfer_problems=false
339	usern=$LOGNAME
340	use_openmp=false
341	working_directory=`pwd`
342	TOPT=""
343	XOPT=""
344	zeit=$( date \| cut -c 12-19 )
345
346	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
347	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
348
349	typeset -R30 calltime
350	typeset -L20 spalte1
351	typeset -L40 spalte2
352	typeset -L60 spalte3
353	typeset -L35 string1=`date`
354	typeset -L12 string2=$usern
355	typeset -L12 string3=$localhost_realname
356	typeset -L12 string4
357	typeset -L12 string5
358	typeset -L30 version="MRUN 2.0 Rev$Rev: 757 $"
359
360
361
362	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
363	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
364
365	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
366	# EXPORTIERT WERDEN
367	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
368	export group_number input_list memory numprocs output_list queue run_mode
369
370
371
372	# FEHLERBEHANDLUNG
373	# BEI EXIT:
374	trap 'rm -rf $working_directory/tmp_mrun
375	if [[ $locat != localhost ]]
376	then
377	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
378	# then
379	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
380	#MRUN-calls on $localhost
381	#
382	#date and time user localhost remotehost termination mrun-command
383	#--------------------------------------------------------------------------------------------------------------------
384	#%STATEND%
385	# chmod 666 ${mrun_path}/statistik/mrun_statistik
386	# fi
387	#
388	# # EINTRAG IN DIE STATISTIK-DATEI
389	# string4=$host
390	# string5=$locat
391	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
392	# then
393	# if [[ $do_batch = true ]]
394	# then
395	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
396	# else
397	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
398	# fi
399	# fi
400	echo " " > /dev/null
401	fi
402
403	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
404	then
405
406	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
407	(( i = 0 ))
408	while (( i < iec ))
409	do
410	(( i = i + 1 ))
411	printf "\n *** Execution of ERROR-command:\n"
412	printf " >>> ${err_command[$i]}\n"
413	eval ${err_command[$i]}
414	done
415	if [[ -n $interpreted_config_file ]] then
416	rm -rf $interpreted_config_file
417	fi
418	if [[ -n .mrun_environment ]] then
419	rm -rf .mrun_environment
420	fi
421	if [[ $tmpcreate = true ]]
422	then
423	printf "\n *** Contents of \"$TEMPDIR\":\n"
424	ls -al; cd
425	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
426	fi
427	if [[ "$dvrserver_id" != "" ]]
428	then
429	echo "+++ killing dvrserver_id=$dvrserver_id"
430	kill $dvrserver_id
431	fi
432	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
433	then
434	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
435	fi
436	printf "\n\n+++ MRUN killed \n\n"
437	elif [[ $locat != control_c ]]
438	then
439	printf "\n\n --> all actions finished\n\n"
440	printf " Bye, bye $usern !!\n\n"
441	fi' exit
442
443
444	# BEI TERMINAL-BREAK:
445	trap 'rm -rf $working_directory/tmp_mrun
446	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
447	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
448	then
449	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
450	fi
451	if [[ "$dvrserver_id" != "" ]]
452	then
453	echo "+++ killing dvrserver_id=$dvrserver_id"
454	kill $dvrserver_id
455	fi
456	printf "\n+++ MRUN killed by \"^C\" \n\n"
457	locat=control_c
458	exit
459	' 2
460
461
462	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
463	# BEEN SET
464	if [[ "$PALM_BIN" = "" ]]
465	then
466	printf "\n +++ environment variable PALM_BIN has not been set"
467	printf "\n please set it to the directory where the PALM scripts are located"
468	locat=palm_bin; exit
469	fi
470	export PATH=$PALM_BIN:$PATH
471
472
473
474	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
475	# FUER FOLGEJOBS BENOETIGT WIRD
476	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
477	do
478	case $option in
479	(a) afname=$OPTARG;;
480	(A) store_on_archive_system=true; mc="$mc -A";;
481	(b) do_batch=true; mc="$mc -b";;
482	(B) delete_temporary_catalog=false; mc="$mc -B";;
483	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
484	(C) restart_run=true; mc="$mc -C";;
485	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
486	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
487	(F) job_on_file="-D"; mc="$mc -F";;
488	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
489	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
490	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
491	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
492	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
493	(I) ignore_archive_error=true; mc="$mc -I";;
494	(k) keep_data_from_previous_run=true; mc="$mc -k";;
495	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
496	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
497	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
498	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
499	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
500	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
501	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
502	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
503	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
504	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
505	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
506	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
507	(S) read_from_config=false; mc="$mc -S";;
508	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
509	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
510	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
511	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
512	(v) silent=true; mc="$mc -v";;
513	(x) do_trace=true;set -x; mc="$mc -x";;
514	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
515	(y) ocean_file_appendix=true; mc="$mc -y";;
516	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
517	(\?) printf "\n +++ unknown option $OPTARG \n"
518	printf "\n --> type \"$0 ?\" for available options \n"
519	locat=parameter;exit;;
520	esac
521	done
522
523
524	# EVTL. POSITIONSPARAMETER EINLESEN
525	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
526	shift OPTIND-1
527
528
529	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
530	if [[ "$1" = "?" ]]
531	then
532	(printf "\n *** mrun can be called as follows:\n"
533	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
534	printf "\n Description of available options:\n"
535	printf "\n Option Description Default-Value"
536	printf "\n -a base name of input files equiv. -d"
537	printf "\n -A archiving when using file-attribute fl"
538	printf "\n -b batch-job on local machine ---"
539	printf "\n -B do not delete temporary directory at end ---"
540	printf "\n -c configuration file .mrun.config"
541	printf "\n -d base name of files attached to program test"
542	printf "\n -D preprocessor(cpp)-directives \"\" "
543	printf "\n -F create remote job file only ---"
544	printf "\n -h execution host $localhost_realname"
545	printf "\n -i INPUT control list \"\" "
546	printf "\n -I archiving errors of previous batch-jobs"
547	printf "\n will be ignored"
548	printf "\n -k keep data from previous run"
549	printf "\n -K additional conditions for controling"
550	printf "\n usage of conditional code and"
551	printf "\n env-variables in configuration file \"\" "
552	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
553	printf "\n -M Makefile name Makefile"
554	printf "\n -n node usage (shared/not_shared) depending on -h"
555	printf "\n -o OUTPUT control list \"\" "
556	printf "\n -O use OpenMP ---"
557	printf "\n -p software package list \"\" "
558	printf "\n -q queue \"$queue\" "
559	printf "\n -r run control list (combines -i -o) \"\" "
560	printf "\n -s filenames of routines to be compiled \"\" "
561	printf "\n must end with .f, .f90, .F, or .c !"
562	printf "\n use \"..\" for more than one file and wildcards"
563	printf "\n -s TEST compiles all files with w-permit"
564	printf "\n -S config file interpreted by shellscript ---"
565	printf "\n -t allowed cpu-time in seconds (batch) 0"
566	printf "\n -T tasks per node depending on -h"
567	printf "\n -u username on remote machine \"\" "
568	printf "\n -v no prompt for confirmation ---"
569	printf "\n -x tracing of mrun for debug purposes ---"
570	printf "\n -X # of processors (on parallel machines) 1"
571	printf "\n -y add appendix \"_O\" to all local output"
572	printf "\n files (ocean precursor runs followed by"
573	printf "\n coupled atmosphere-ocean runs) ---"
574	printf "\n -Y run coupled model, \"#1 #2\" with"
575	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
576	printf "\n "
577	printf "\n Possible values of positional parameter <modus>:"
578	printf "\n \"?\" - this outline \n\n") \| more
579	exit
580	elif [[ "$1" != "" ]]
581	then
582	printf "\n +++ positional parameter $1 unknown \n"
583	locat=parameter; exit
584	fi
585
586
587
588	# KURZE STARTMELDUNG
589	printf "\n*** $version "
590	printf "\n will be executed. Please wait ..."
591
592
593
594	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
595	if [[ ! -f $config_file ]]
596	then
597	printf "\n\n +++ configuration file: "
598	printf "\n $config_file"
599	printf "\n does not exist"
600	locat=connect; exit
601	fi
602
603
604	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
605	line=""
606	grep "%host_identifier" $config_file > tmp_mrun
607	while read line
608	do
609	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
610	then
611	HOSTNAME=`echo $line \| cut -d" " -s -f2`
612	host_identifier=`echo $line \| cut -d" " -s -f3`
613	if [[ $localhost_realname = $HOSTNAME ]]
614	then
615	localhost=$host_identifier
616	break
617	fi
618	fi
619	done < tmp_mrun
620
621	if [[ "$localhost" = "" ]]
622	then
623	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
624	printf "\n for local host \"$localhost_realname\"."
625	printf "\n Please add line"
626	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
627	printf "\n to the configuration file."
628	locat=localhost; exit
629	fi
630
631
632	# HOSTSPEZIFISCHE VARIABLEN SETZEN
633	case $localhost_realname in
634	(r1\|r2\|h01\|b01) archive_system=tivoli;;
635	(cs*) archive_system=ut;;
636	(fimm.bccs.uib.no) fimm=true;;
637	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
638	(scirocco) scirocco=true;;
639	esac
640
641
642
643	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
644	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
645	[[ "$afname" = "" ]] && afname=$fname
646
647
648	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
649	if [[ "$run_mode" != "" ]]
650	then
651	input_list="$input_list $run_mode"
652	output_list="$output_list $run_mode"
653	fi
654
655
656	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
657	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
658	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
659	# STARTET)
660	if [[ "$fromhost" = "" ]]
661	then
662	fromhost=$localhost
663	fi
664
665
666	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
667	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
668	then
669	source_list=TEST
670	local_compile=true
671	host=$localhost
672	fi
673
674
675	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
676	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
677	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
678	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
679	if [[ -n $host && "$host" != $localhost ]]
680	then
681	do_batch=true
682	do_remote=true
683	case $host in
684	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
685	(*) printf "\n"
686	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
687	printf "\n is not available"
688	locat=nqs; (( iec = 0 )); exit;;
689	esac
690	else
691	host=$localhost
692	fi
693
694
695	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
696	if [[ -n $additional_conditions ]]
697	then
698	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
699	cond1=`echo $additional_conditions \| cut -d" " -f1`
700	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
701	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
702	if [[ -n $dummy ]]
703	then
704	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
705	locat=options; exit
706	fi
707	block=_$cond1
708	[[ -n $cond2 ]] && block=${block}_$cond2
709	fi
710
711
712	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
713	if [[ $run_coupled_model = true ]]
714	then
715
716	if [[ -n $coupled_dist ]]
717	then
718
719	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
720	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
721
722	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
723	then
724
725	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
726	printf "\n PEs (total) : $numprocs"
727	printf "\n PEs (atmosphere): $numprocs_atmos"
728	printf "\n PEs (ocean) : $numprocs_ocean"
729	locat=coupling; exit
730
731	fi
732
733	else
734
735	(( numprocs_ocean = $numprocs / 2 ))
736	(( numprocs_atmos = $numprocs / 2 ))
737
738	fi
739	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
740
741	# GET coupled_mode FROM THE CONFIG FILE
742	line=""
743	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
744	while read line
745	do
746	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
747	then
748	coupled_mode="mpi2"
749	fi
750	done < tmp_mrun
751
752	fi
753
754
755	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
756	# ARCHIVIERUNG FEHLGESCHLAGEN IST
757	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
758	then
759	if [[ $ignore_archive_error = false ]]
760	then
761	printf "\n +++ data archiving of previous run failed"
762	printf "\n see directory \~/job_queue on remote machine"
763	locat=archive; exit
764	else
765	printf "\n +++ warning: data archiving in a previous run failed"
766	printf "\n MRUN continues, trying to get backup copy"
767	fi
768	fi
769
770
771
772	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
773	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
774	if [[ "$read_from_config" = false ]]
775	then
776
777	[[ $silent = false ]] && printf "\n Reading the configuration file... "
778	while read zeile
779	do
780	[[ $silent = false ]] && printf "."
781
782
783	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
784	# ERSETZEN
785	eval zeile=\"$zeile\"
786
787
788	# INTERPRETATION DER ZEILE
789	if [[ "$(echo $zeile)" = "" ]]
790	then
791	# LEERZEILE, KEINE AKTION
792	continue
793
794	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
795	then
796
797	# ZEILE IST KOMMENTARZEILE
798	true
799
800	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
801	then
802
803	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
804	zeile=$(echo $zeile \| cut -c2-)
805	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
806	var=`echo $zeile \| cut -d" " -f1`
807	value=`echo $zeile \| cut -d" " -s -f2`
808	for_host=`echo $zeile \| cut -d" " -s -f3`
809	for_cond1=`echo $zeile \| cut -d" " -s -f4`
810	for_cond2=`echo $zeile \| cut -d" " -s -f5`
811
812	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
813	then
814
815	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
816	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
817	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
818
819
820	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
821	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
822	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
823	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
824	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
825	# KONFIGURATIONSDATEI
826	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
827	then
828	eval $var=\$value
829
830	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
831	if [[ $do_trace = true ]]
832	then
833	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
834	fi
835	fi
836
837	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
838	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
839	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
840	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
841	if [[ $var = host ]]
842	then
843	if [[ -n $host && "$host" != $localhost ]]
844	then
845	do_batch=true
846	do_remote=true
847	case $host in
848	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
849	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
850	printf "\n is not available"
851	locat=nqs; exit;;
852	esac
853	else
854	host=$localhost
855	fi
856	fi
857
858	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
859	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
860	# DEN PROGRAMMEN BENOETIGT WERDEN
861	export $var
862	fi
863
864
865
866
867	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
868	then
869
870	# ZEILE DEFINIERT ERROR-KOMMANDO
871	(( iec = iec + 1 ))
872	zeile=$(echo $zeile \| cut -c4-)
873	err_command[$iec]="$zeile"
874
875	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
876	then
877
878	# ZEILE DEFINIERT INPUT-KOMMANDO
879	(( iic = iic + 1 ))
880	zeile=$(echo $zeile \| cut -c4-)
881	in_command[$iic]="$zeile"
882
883	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
884	then
885
886	# ZEILE DEFINIERT OUTPUT-KOMMANDO
887	(( ioc = ioc + 1 ))
888	zeile=$(echo $zeile \| cut -c4-)
889	out_command[$ioc]="$zeile"
890
891	else
892
893	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
894	# s2a: in/out - Feld
895	# s2b: loc - Feld (optional)
896	# s2c: tr/ar - Feld (optional)
897	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
898	s1=`echo $zeile \| cut -d" " -f1`
899	s2=`echo $zeile \| cut -d" " -s -f2`
900	s2a=$(echo $s2 \| cut -d":" -f1)
901	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
902	then
903	s2b=""
904	s2c=""
905	else
906	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
907	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
908	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
909	fi
910	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
911	s3=`echo $zeile \| cut -d" " -f3`
912	s4=`echo $zeile \| cut -d" " -s -f4`
913	s5=`echo $zeile \| cut -d" " -s -f5`
914	s6=`echo $zeile \| cut -d" " -s -f6`
915
916
917	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
918	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
919	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
920	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
921	# HANDEN SEIN MUSS (D.H. s2b = loc)
922	IFSALT="$IFS"; IFS="$IFS:"
923	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
924	then
925	found=false
926	for actual in $input_list
927	do
928	for formal in $s3
929	do
930	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
931	done
932	done
933	if [[ $found = true ]]
934	then
935	(( iin = iin + 1 ))
936	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
937	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
938	extin[$iin]=$s6
939	fi
940	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
941	then
942	found=false
943	for actual in $output_list
944	do
945	for formal in $s3
946	do
947	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
948	done
949	done
950	if [[ $found = true ]]
951	then
952	(( iout = iout + 1 ))
953	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
954	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
955	fi
956	elif [[ "$s2a" != in && "$s2a" != out ]]
957	then
958	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
959	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
960	locat=connect; exit
961	fi
962	IFS="$IFSALT"
963	fi
964	done < $config_file
965
966	else
967
968
969	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
970	[[ $silent = false ]] && printf "..."
971	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
972	export interpreted_config_file=.icf.$RANDOM
973
974
975
976	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
977	# VERFUEGUNG STELLEN
978	cat > .mrun_environment << %%END%%
979	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
980	config_file = '$config_file', do_remote = '$do_remote',
981	do_trace = '$do_trace', host = '$host',
982	input_list = '$input_list', icf = '$interpreted_config_file',
983	localhost = '$localhost', output_list = '$output_list' /
984
985	%%END%%
986
987	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
988	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
989	mrun_memory=$memory
990	mrun_group_number=$group_number
991	mrun_cpumax=$cpumax
992	mrun_numprocs=$numprocs
993
994	if [[ $localhost_realname = "sx-fep" ]]
995	then
996	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
997	else
998
999	if [[ "$host" != $localhost ]]
1000	then
1001
1002	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1003	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1004	if [[ $? != 0 ]]
1005	then
1006	printf "\n\n +++ no interpret_config found"
1007	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1008	locat=interpret_config; exit
1009	fi
1010	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1011	$interpret_config_executable
1012
1013	else
1014
1015	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1016	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1017	then
1018	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1019	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1020	locat=interpret_config; exit
1021	else
1022	interpret_config${block}.x
1023	fi
1024
1025	fi
1026	fi
1027	rm .mrun_environment
1028
1029
1030	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1031	chmod u+x $interpreted_config_file
1032	export PATH=$PATH:.
1033	. $interpreted_config_file
1034	rm $interpreted_config_file
1035
1036
1037	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1038	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1039	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1040	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1041	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1042
1043	fi
1044
1045
1046	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1047	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1048	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1049	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1050	if [[ "$SOURCES_COMPLETE" = "" ]]
1051	then
1052
1053	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1054	# VEREINBART WURDE
1055	source_path=""
1056	line=""
1057	grep "%source_path" $config_file > tmp_mrun
1058	while read line
1059	do
1060	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1061	then
1062	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1063	then
1064	global_source_path=`echo $line \| cut -d" " -f2`
1065	fi
1066	fi
1067	done < tmp_mrun
1068
1069	line=""
1070	found=false
1071	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1072	while read line
1073	do
1074	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1075	then
1076	if [[ $found = true ]]
1077	then
1078	printf "\n\n +++ more than one source path found in configuration file"
1079	printf "\n for local host \"$localhost\" "
1080	locat=source_path; exit
1081	fi
1082	source_path=`echo $line \| cut -d" " -f2`
1083	found=true
1084	fi
1085	done < tmp_mrun
1086	rm tmp_mrun
1087
1088	if [[ "$source_path" = "" ]]
1089	then
1090	if [[ "$global_source_path" != "" ]]
1091	then
1092	source_path=$global_source_path
1093	else
1094	printf "\n\n +++ no source path found in configuration file"
1095	printf "\n for local host \"$localhost\" "
1096	locat=source_path; exit
1097	fi
1098	fi
1099	eval source_path=$source_path
1100
1101	if [[ ! -d $source_path ]]
1102	then
1103	printf "\n\n +++ source path \"$source_path\" on local host"
1104	printf "\n \"$localhost\" does not exist"
1105	locat=source_path; exit
1106	fi
1107
1108	fi
1109
1110
1111	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1112	# DURCH OPTION -G MITGETEILT)
1113	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1114	then
1115	global_revision=`svnversion $source_path 2>/dev/null`
1116	global_revision="Rev: $global_revision"
1117	fi
1118
1119
1120	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1121	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1122	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1123	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1124	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1125	if [[ -n $host && "$host" != $localhost ]]
1126	then
1127	do_batch=true
1128	do_remote=true
1129	case $host in
1130	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1131	(*) printf "\n"
1132	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1133	printf "\n is not available"
1134	locat=nqs; (( iec = 0 )); exit;;
1135	esac
1136	else
1137	host=$localhost
1138	fi
1139
1140
1141	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1142	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1143	then
1144
1145	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1146	if [[ ! -n $numprocs ]]
1147	then
1148	printf "\n"
1149	printf "\n +++ option \"-K parallel\" requires additional specification"
1150	printf "\n of the number of processors to be used by"
1151	printf "\n mrun-option \"-X\" or by environment-variable"
1152	printf "\n \"numprocs\" in the configuration file"
1153	locat=numprocs; (( iec = 0 )); exit
1154	fi
1155
1156	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1157	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1158	# GESAMTPROZESSORANZAHL IST
1159	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmkisti \|\| $host = ibms ]]
1160	then
1161	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1162	(( ival = $tasks_per_node ))
1163	(( pes = numprocs ))
1164	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1165	# then
1166	# (( pes = pes - 1 ))
1167	# fi
1168	(( ii = pes / ival ))
1169	if (( pes - ii * ival > 0 ))
1170	then
1171	printf "\n"
1172	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1173	printf "\n divisor of the total number of processors (option \"-X\")"
1174	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1175	locat=tasks_per_node; (( iec = 0 )); exit
1176	fi
1177	fi
1178
1179	# IBMY HAT NUR EINEN KNOTEN
1180	if [[ $host = ibmy ]]
1181	then
1182	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1183	then
1184	printf "\n"
1185	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1186	printf "\n total number of processors (option \"-X\")"
1187	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1188	locat=tasks_per_node; (( iec = 0 )); exit
1189	fi
1190	fi
1191
1192	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1193	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1194	# if [[ $use_openmp = true ]]
1195	# then
1196	# threads_per_task=$tasks_per_node
1197	# tasks_per_node=1
1198	# fi
1199
1200	# SETTINGS FOR SUBJOB-COMMAND
1201	TOPT="-T $tasks_per_node"
1202	OOPT="-O $threads_per_task"
1203
1204	# GESAMTZAHL DER KNOTEN BESTIMMEN
1205	if [[ "$tasks_per_node" != "" ]]
1206	then
1207	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1208	fi
1209
1210	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1211	# SETZEN
1212	if [[ $node_usage = default ]]
1213	then
1214	if [[ $host = ibms ]]
1215	then
1216	node_usage=shared
1217	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1218	then
1219	node_usage=singlejob
1220	else
1221	node_usage=not_shared
1222	fi
1223	fi
1224
1225	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1226	then
1227	printf "\n"
1228	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1229	printf "\n \"shared\" or \"not_shared\""
1230	locat=tasks_per_node; (( iec = 0 )); exit
1231	fi
1232
1233	fi
1234
1235	# PRUEFEN, OB HOSTFILE EXISTIERT
1236	if [[ -n $hostfile ]]
1237	then
1238	if [[ ! -f $hostfile ]]
1239	then
1240	printf "\n"
1241	printf "\n +++ hostfile \"$hostfile\" does not exist"
1242	locat=hostfile; exit
1243	fi
1244	fi
1245
1246	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1247	if [[ $host = ibmy && $do_remote = false ]]
1248	then
1249	if [[ ! -f $HOME/.rhosts ]]
1250	then
1251	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1252	printf "\n\n *** file:"
1253	printf "\n $HOME/.rhosts"
1254	printf "\n was created\n"
1255	fi
1256	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1257	then
1258	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1259	printf "\n\n *** file:"
1260	printf "\n $HOME/.rhosts"
1261	printf "\n was extended by the name of the current host\n"
1262	fi
1263	fi
1264
1265
1266
1267	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1268	if [[ $queue = none ]]
1269	then
1270	case $host in
1271	(ibmh) queue=no_class;;
1272	(ibmkisti) queue=class.32plus;;
1273	(ibmy) queue=parallel;;
1274	(lckyoto) queue=ph;;
1275	(lcsgib) queue=bigq;;
1276	(lcsgih) queue=bigq;;
1277	(lctit) queue=S;;
1278	(nech) queue=none;;
1279	(necriam) queue=SP;;
1280	(unics) queue=unics;;
1281	esac
1282	fi
1283
1284
1285	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1286	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1287	# ERMITTELN
1288	(( i = 0 ))
1289	while (( i < iin ))
1290	do
1291	(( i = i + 1 ))
1292	(( maxcycle = 0 ))
1293
1294	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1295	if [[ "${actionin[$i]}" = di ]]
1296	then
1297	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1298	# REM-MASCHINE AUSWERTEN
1299	eval filename=${pathin[$i]}/${endin[$i]}
1300	else
1301	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1302	# REM-MASCHINE AUSWERTEN
1303	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1304	fi
1305
1306	# PRUEFEN AUF VORHANDENSEIN
1307	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1308	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1309	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1310	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1311	then
1312	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1313	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1314	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1315	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1316	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1317	if [[ "${transin[$i]}" != "locopt" ]]
1318	then
1319	printf "\n\n +++ INPUT-file: "
1320	if [[ "${extin[$i]}" = "" ]]
1321	then
1322	printf "\n $filename"
1323	else
1324	printf "\n $filename.${extin[$i]}"
1325	fi
1326	printf "\n does not exist\n"
1327	locat=input; exit
1328	else
1329	transin[$i]="unavailable"
1330	fi
1331	else
1332
1333	# ZYKLUSNUMMER FESTSTELLEN
1334	ls -1 -d $filename > filelist 2>/dev/null
1335	ls -1 -d $filename.* >> filelist 2>/dev/null
1336	while read zeile
1337	do
1338	cycle=$(print $zeile \| cut -f2 -d".")
1339	if [[ "$cycle" = "$zeile" ]]
1340	then
1341	(( icycle = 0 ))
1342	elif [[ "$cycle" = "${extin[$i]}" ]]
1343	then
1344	(( icycle = 0 ))
1345	else
1346	(( icycle = $cycle ))
1347	fi
1348	if (( icycle > maxcycle ))
1349	then
1350	(( maxcycle = icycle ))
1351	file_to_be_used=$zeile
1352	fi
1353	done <filelist
1354	rm filelist
1355
1356	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1357	if (( maxcycle > 0 ))
1358	then
1359	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1360	then
1361	filename=${filename}.$maxcycle.${extin[$i]}
1362	else
1363	filename=${filename}.$maxcycle
1364	fi
1365	else
1366	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1367	then
1368	filename=${filename}.${extin[$i]}
1369	fi
1370	fi
1371
1372	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1373	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1374	absnamein[$i]=$filename
1375	if (( maxcycle > 0 ))
1376	then
1377	if [[ "${actionin[$i]}" = di ]]
1378	then
1379	frelin[$i]=${endin[$i]}.$maxcycle
1380	else
1381	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1382	fi
1383	else
1384	if [[ "${actionin[$i]}" = di ]]
1385	then
1386	frelin[$i]=${endin[$i]}
1387	else
1388	frelin[$i]=${afname}${endin[$i]}
1389	fi
1390	fi
1391
1392	fi
1393	done
1394
1395
1396	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1397	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1398	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1399	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1400	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1401	(( i = 0 ))
1402	while (( i < iout ))
1403	do
1404	(( i = i + 1 ))
1405	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1406	then
1407	if [[ "${actionout[$i]}" = tr ]]
1408	then
1409	actionout[$i]=""
1410	elif [[ "${actionout[$i]}" = trpe ]]
1411	then
1412	actionout[$i]=pe
1413	elif [[ "${actionout[$i]}" = tra ]]
1414	then
1415	actionout[$i]=a
1416	fi
1417	(( maxcycle = 0 ))
1418	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1419	eval catalogname=${pathout[$i]}
1420	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1421	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1422	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1423	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1424	then
1425
1426	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1427	if cat /dev/null > $filename
1428	then
1429	rm $filename
1430	else
1431
1432	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1433	if [[ ! -d $catalogname ]]
1434	then
1435	if mkdir -p $catalogname
1436	then
1437	printf "\n\n *** directory:"
1438	printf "\n $catalogname"
1439	printf "\n was created\n"
1440	else
1441	printf "\n\n +++ OUTPUT-file:"
1442	printf "\n $filename"
1443	printf "\n cannot be created, because directory does not exist"
1444	printf "\n and cannot be created either"
1445	printf "\n"
1446	locat=output ; exit
1447	fi 2>/dev/null
1448	else
1449	printf "\n\n +++ OUTPUT-file:"
1450	printf "\n $filename"
1451	printf "\n cannot be created, although directory exists"
1452	printf "\n"
1453	locat=output ; exit
1454	fi
1455	fi 2>/dev/null
1456	else
1457
1458	# ZYKLUSNUMMER FESTSTELLEN
1459	ls -1 -d $filename > filelist 2>/dev/null
1460	ls -1 -d $filename.* >> filelist 2>/dev/null
1461	while read zeile
1462	do
1463	cycle=$(print $zeile \| cut -f2 -d".")
1464	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1465	then
1466	(( icycle = 1 ))
1467	else
1468	(( icycle = $cycle + 1 ))
1469	fi
1470	if (( icycle > maxcycle ))
1471	then
1472	(( maxcycle = icycle ))
1473	fi
1474	done <filelist
1475	rm filelist
1476	fi
1477
1478	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1479	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1480	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1481	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1482	if [[ "${actionout[$i]}" != a ]]
1483	then
1484	if (( maxcycle > 0 ))
1485	then
1486	filename=${filename}.$maxcycle
1487	if cat /dev/null > $filename
1488	then
1489	rm $filename
1490	else
1491	printf "\n +++ OUTPUT-file:"
1492	printf "\n $filename"
1493	printf "\n cannot be created"
1494	locat=output ; exit
1495	fi
1496	fi
1497	else
1498	(( maxcycle = maxcycle - 1 ))
1499	if (( maxcycle > 0 ))
1500	then
1501	filename=${filename}.$maxcycle
1502	fi
1503	fi
1504
1505	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1506	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1507	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1508	pathout[$i]=$filename
1509	if (( maxcycle > 0 ))
1510	then
1511	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1512	else
1513	frelout[$i]=${fname}${endout[$i]}
1514	fi
1515
1516	fi
1517	done
1518
1519
1520	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1521	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1522	then
1523	if [[ "$dvr_inc" = "" ]]
1524	then
1525	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1526	printf "\n This is required for the dvrp_graphics package.\n"
1527	locat=dvr; exit
1528	fi
1529	if [[ "$dvr_lib" = "" ]]
1530	then
1531	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1532	printf "\n This is required for the dvrp_graphics package.\n"
1533	locat=dvr; exit
1534	fi
1535	fi
1536
1537
1538	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1539	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1540	# UEBERSETZT ZU WERDEN)
1541	if [[ "$mainprog" = "" && "$executable" = "" ]]
1542	then
1543	printf "\n +++ neither main program nor executable defined"
1544	locat=source; exit
1545	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1546	then
1547	printf "\n +++ main program as well as executable defined"
1548	locat=source; exit
1549	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1550	then
1551	do_compile=false
1552	fi
1553
1554
1555	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1556	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1557	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1558	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1559	then
1560	rm -rf SOURCES_FOR_RUN_$fname
1561	mkdir SOURCES_FOR_RUN_$fname
1562	fi
1563
1564
1565	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1566	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1567	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1568	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1569	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1570	then
1571
1572	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1573	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1574
1575
1576	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1577	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1578	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1579	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1580	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1581	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1582	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1583	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1584	# GESAMMELT
1585	if [[ "$source_list" = WRITE_PERMIT ]]
1586	then
1587
1588	source_list=""
1589	cd $source_path
1590
1591
1592	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1593	Names=$(ls -1 *.f90 2>&1)
1594	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1595	Names=$(ls -1 *.F90 2>&1)
1596	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1597	Names=$(ls -1 *.F 2>&1)
1598	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1599	Names=$(ls -1 *.f 2>&1)
1600	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1601	Names=$(ls -1 *.c 2>&1)
1602	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1603
1604
1605	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1606	for dateiname in $Filenames
1607	do
1608	if [[ -w $dateiname ]]
1609	then
1610	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1611	then
1612	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1613	source_list=$source_list"$dateiname "
1614	fi
1615	fi
1616	done
1617
1618	cd - > /dev/null
1619
1620
1621	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1622	then
1623
1624	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1625	source_list=""
1626	cd $source_path
1627
1628
1629	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1630	if [[ ! -d .svn ]]
1631	then
1632	printf "\n\n +++ source directory"
1633	printf "\n \"$source_path\" "
1634	printf "\n is not under control of \"subversion\"."
1635	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1636	fi
1637
1638
1639	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1640	Filenames=""
1641	svn status > tmp_mrun
1642	while read line
1643	do
1644	firstc=`echo $line \| cut -c1`
1645	if [[ $firstc = M \|\| $firstc = "?" ]]
1646	then
1647	Name=`echo "$line" \| cut -c8-`
1648	extension=`echo $Name \| cut -d. -f2`
1649	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1650	then
1651	Filenames="$Filenames "$Name
1652	fi
1653	fi
1654	done < tmp_mrun
1655
1656
1657	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1658	for dateiname in $Filenames
1659	do
1660	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1661	source_list=$source_list"$dateiname "
1662	done
1663
1664	cd - > /dev/null
1665
1666
1667	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1668	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1669	# VORHANDEN
1670	elif [[ "$source_list" != "" && $restart_run != true ]]
1671	then
1672
1673	cd $source_path
1674
1675	for filename in $source_list
1676	do
1677
1678	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1679	if [[ $(print $filename \| grep -c "/") != 0 ]]
1680	then
1681	printf "\n +++ source code file: $filename"
1682	printf "\n must not contain (\"/\") "
1683	locat=source; exit
1684	fi
1685
1686	if [[ ! -f $filename ]]
1687	then
1688	printf "\n +++ source code file: $filename"
1689	printf "\n does not exist"
1690	locat=source; exit
1691	else
1692	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1693	fi
1694
1695	done
1696
1697	cd - > /dev/null
1698
1699	fi
1700
1701
1702	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1703	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1704	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1705	if [[ $restart_run != true ]]
1706	then
1707
1708	if [[ ! -f "$source_path/$mainprog" ]]
1709	then
1710	printf "\n\n +++ main program: $mainprog"
1711	printf "\n does not exist in source directory"
1712	printf "\n \"$source_path\"\n"
1713	locat=source; exit
1714	else
1715	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1716	then
1717	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1718	source_list=${mainprog}" $source_list"
1719	fi
1720	fi
1721	fi
1722
1723
1724	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1725	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1726	if [[ "$restart_run" != true ]]
1727	then
1728	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1729	if [[ ! -f $makefile ]]
1730	then
1731	printf "\n +++ file \"$makefile\" does not exist"
1732	locat=make; exit
1733	else
1734	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1735	fi
1736	fi
1737
1738
1739	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1740	if [[ $restart_run != true && "$add_source_path" != "" ]]
1741	then
1742
1743	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1744	if [[ ! -d $add_source_path ]]
1745	then
1746	printf "\n\n +++ WARNING: additional source code directory"
1747	printf "\n \"$add_source_path\" "
1748	printf "\n does not exist or is not a directory."
1749	printf "\n No source code will be used from this directory!\n"
1750	add_source_path=""
1751	sleep 3
1752	else
1753
1754	cd $add_source_path
1755	found=false
1756
1757	Names=$(ls -1 *.f90 2>&1)
1758	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1759	Names=$(ls -1 *.F90 2>&1)
1760	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1761	Names=$(ls -1 *.F 2>&1)
1762	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1763	Names=$(ls -1 *.f 2>&1)
1764	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1765	Names=$(ls -1 *.c 2>&1)
1766	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1767
1768	cd - > /dev/null
1769	cd SOURCES_FOR_RUN_$fname
1770
1771	# COPY MAKEFILE IF EXISTING
1772	if [[ -f $add_source_path/Makefile ]]
1773	then
1774	printf "\n\n *** user Makefile from directory"
1775	printf "\n \"$add_source_path\" is used \n"
1776	sleep 1
1777	cp $add_source_path/Makefile .
1778	fi
1779
1780	for dateiname in $AddFilenames
1781	do
1782	if [[ -f $dateiname ]]
1783	then
1784	printf "\n +++ source code file \"$dateiname\" found in additional"
1785	printf "\n source code directory \"$add_source_path\" "
1786	printf "\n but was also given with option \"-s\" which means that it should be taken"
1787	printf "\n from directory \"$source_path\"."
1788	locat=source; exit
1789	fi
1790
1791	cp $add_source_path/$dateiname .
1792	source_list="$source_list $dateiname"
1793
1794	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1795	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1796	then
1797	printf "\n\n +++ user file \"$dateiname\" "
1798	printf "\n is not listed in Makefile \n"
1799	locat=source; exit
1800	else
1801
1802	# Default User-Interface von der Liste entfernen, falls Datei
1803	# ein User-Interface enthaelt
1804	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1805	# then
1806	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1807	# then
1808	# rm -rf user_interface.f90
1809	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1810	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1811	# printf "\n since a user-interface is found in file"
1812	# printf "\n \"$add_source_path/$dateiname\" \n"
1813	# sleep 3
1814	# else
1815	if [[ $found = false ]]
1816	then
1817	found=true
1818	printf "\n\n *** following user file(s) added to the"
1819	printf " files to be translated:\n "
1820	fi
1821	printf "$dateiname "
1822	sleep 0.5
1823	fi
1824	done
1825	[[ $found = true ]] && printf "\n"
1826	cd - > /dev/null
1827	fi
1828	fi
1829
1830
1831	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1832	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1833	if [[ $restart_run != true && -n $package_list ]]
1834	then
1835
1836	cd $source_path
1837
1838	for package in $package_list
1839	do
1840
1841	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1842
1843	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1844	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1845	# LIEFERT
1846	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1847
1848
1849	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1850	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1851	for source_list_name in $package_source_list
1852	do
1853	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1854	then
1855
1856	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1857	ending=`echo $source_list_name \| cut -f2 -d.`
1858	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1859	then
1860	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1861	source_list="$source_list $source_list_name"
1862	fi
1863	fi
1864	done
1865	done
1866
1867	cd - > /dev/null
1868	fi
1869
1870
1871	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1872	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1873	# if [[ "$restart_run" != true ]]
1874	# then
1875	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1876	# if [[ ! -f $makefile ]]
1877	# then
1878	# printf "\n +++ file \"$makefile\" does not exist"
1879	# locat=make; exit
1880	# else
1881	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1882	# fi
1883	# fi
1884
1885	fi # do_compile=true
1886
1887
1888	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1889	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1890	if [[ $do_compile = true ]]
1891	then
1892
1893	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1894	# ZUSAMMENSETZEN
1895	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1896	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1897	then
1898	cpp_options="${cpp_options},-D__ibm=__ibm"
1899	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1900	then
1901	cpp_options="$cpp_options -D__nec"
1902	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1903	then
1904	cpp_options="$cpp_options -D__lc"
1905	else
1906	cpp_options="$cpp_options -D__$localhost"
1907	fi
1908
1909	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1910	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1911	then
1912	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1913	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1914	else
1915	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1916	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1917	fi
1918
1919	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1920	if [[ -n $package_list ]]
1921	then
1922	for package in $package_list
1923	do
1924	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1925	then
1926	if [[ $package != "dvrp_graphics+1PE" ]]
1927	then
1928	cpp_options="${cpp_options},-D__$package=__$package"
1929	else
1930	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1931	export use_seperate_pe_for_dvrp_output=true
1932	fi
1933	else
1934	if [[ $package != "dvrp_graphics+1PE" ]]
1935	then
1936	cpp_options="$cpp_options -D__$package"
1937	else
1938	cpp_options="$cpp_options -D__dvrp_graphics"
1939	export use_seperate_pe_for_dvrp_output=true
1940	fi
1941	fi
1942	done
1943	fi
1944
1945	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1946	if [[ -n $cpp_opts ]]
1947	then
1948	for popts in $cpp_opts
1949	do
1950	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1951	then
1952	cpp_options="${cpp_options},-D__$popts=__$popts"
1953	else
1954	cpp_options="$cpp_options -D__$popts"
1955	fi
1956	done
1957	fi
1958
1959	else
1960
1961
1962	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1963	if [[ $do_remote = false ]]
1964	then
1965	if [[ ! -f $executable ]]
1966	then
1967	printf "\n +++ executable file: $executable"
1968	printf "\n does not exist"
1969	locat=executable; exit
1970	fi
1971	fi
1972	fi
1973
1974
1975	# JOBMODUS FESTSTELLEN
1976	if [[ "$ENVIRONMENT" = BATCH ]]
1977	then
1978	jobmo=BATCH
1979	else
1980	jobmo=INTERACTIVE
1981	fi
1982
1983
1984	# no interactive runs on lctit
1985	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1986	then
1987	printf "\n +++ no interactive runs allowed on host \"$host\" "
1988	printf "\n please submit batch job using mrun option \"-b\" \n"
1989	locat=normal; exit
1990	fi
1991
1992
1993	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1994	# DURCH BENUTZER ANDERWEITIG VEREINBART
1995	if [[ "$compiler_name" = "" ]]
1996	then
1997
1998	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1999	locat=compiler_name; exit
2000
2001	fi
2002
2003
2004	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2005	[[ $localhost = necriam ]] && compiler_name=mpif90
2006
2007
2008
2009	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2010	kennung=$RANDOM
2011	if [[ "$tmp_user_catalog" = "" ]]
2012	then
2013	if [[ $localhost = ibmh ]]
2014	then
2015	tmp_user_catalog=$SCRATCH
2016	elif [[ $localhost = nech ]]
2017	then
2018	tmp_user_catalog=$WRKSHR
2019	else
2020	tmp_user_catalog=/tmp
2021	fi
2022	fi
2023	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2024
2025
2026	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2027	# BESTIMMEN
2028	if [[ "$tmp_data_catalog" = "" ]]
2029	then
2030	if [[ $localhost = nech ]]
2031	then
2032	tmp_data_catalog=$WRKSHR/mrun_restart_data
2033	else
2034	tmp_data_catalog=/tmp/mrun_restart_data
2035	fi
2036	fi
2037
2038
2039	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2040	# ERSETZEN
2041	if [[ $do_remote = false && $do_compile = true ]]
2042	then
2043	eval fopts=\"$fopts\"
2044	eval lopts=\"$lopts\"
2045	fi
2046
2047
2048
2049	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2050	fopts="$fopts $netcdf_inc $dvr_inc"
2051	lopts="$lopts $netcdf_lib $dvr_lib"
2052	ROPTS="$ropts"
2053	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2054	then
2055	XOPT="-X $numprocs"
2056	fi
2057
2058
2059
2060	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2061	# GRAMM BENOETIGT
2062	done=false
2063	while [[ $done = false ]]
2064	do
2065	cputime=$cpumax
2066	if (( $cputime == 0 ))
2067	then
2068	if [[ $do_batch = true ]]
2069	then
2070	printf "\n +++ cpu-time is undefined"
2071	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2072	printf "\n >>> "
2073	read cputime 1>/dev/null 2>&1
2074	else
2075	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2076	fi
2077	else
2078	done=true
2079	fi
2080	cpumax=$cputime
2081	done
2082
2083	(( minuten = cputime / 60 ))
2084	(( sekunden = cputime - minuten * 60 ))
2085
2086
2087	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2088	if [[ $do_batch = true ]]
2089	then
2090	done=false
2091	while [[ $done = false ]]
2092	do
2093	if (( memory == 0 ))
2094	then
2095	printf "\n +++ memory demand is undefined"
2096	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2097	printf "\n >>> "
2098	read memory 1>/dev/null 2>&1
2099	else
2100	done=true
2101	fi
2102	done
2103	fi
2104
2105
2106	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2107	if [[ $do_remote = true && -z $remote_username ]]
2108	then
2109	while [[ -z $remote_username ]]
2110	do
2111	printf "\n +++ username on remote host \"$host\" is undefined"
2112	printf "\n >>> Please type username:"
2113	printf "\n >>> "
2114	read remote_username
2115	done
2116	mc="$mc -u$remote_username"
2117	fi
2118
2119
2120	# set module load command and export for subjob
2121	if [[ "$modules" != "" ]]
2122	then
2123	if [[ $host = lctit ]]
2124	then
2125	export module_calls=". $modules"
2126	else
2127	export module_calls="module load ${modules};"
2128	fi
2129	fi
2130
2131	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2132	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2133	then
2134	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2135	then
2136	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2137	fi
2138	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2139	# then
2140	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2141	# echo "*** module_calls = $module_calls"
2142	# fi
2143	fi
2144
2145
2146	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2147	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2148	then
2149	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2150	then
2151	mpilib=mpt
2152	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2153	then
2154	mpilib=mvapich
2155	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2156	then
2157	mpilib=impi
2158	fi
2159	fi
2160
2161
2162
2163	###########################################################################
2164	# HEADER-AUSGABE
2165	###########################################################################
2166
2167
2168	calltime=$(date)
2169	printf "\n"
2170	# [[ $silent = false ]] && clear
2171	printf "#--------------------------------------------------------------# \n"
2172	printf "\| $version$calltime \| \n"
2173	printf "\| \| \n"
2174	spalte1="called on:"; spalte2=$localhost_realname
2175	printf "\| $spalte1$spalte2 \| \n"
2176	if [[ $local_compile = false ]]
2177	then
2178	if [[ $do_remote = true ]]
2179	then
2180	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2181	else
2182	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2183	fi
2184	else
2185	spalte1="compiling test only!"; spalte2=""
2186	fi
2187	printf "\| $spalte1$spalte2 \| \n"
2188	if [[ -n $numprocs ]]
2189	then
2190	spalte1="number of PEs:"; spalte2=$numprocs
2191	printf "\| $spalte1$spalte2 \| \n"
2192	fi
2193	if [[ -n $tasks_per_node ]]
2194	then
2195	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2196	printf "\| $spalte1$spalte2 \| \n"
2197	fi
2198	if [[ $use_openmp = true ]]
2199	then
2200	spalte1="threads per task:"; spalte2="$threads_per_task"
2201	printf "\| $spalte1$spalte2 \| \n"
2202	fi
2203	printf "\| \| \n"
2204	if [[ $do_compile = true ]]
2205	then
2206	if [[ "$mopts" != "" ]]
2207	then
2208	spalte1="make options:"; spalte2=$mopts
2209	printf "\| $spalte1$spalte2 \| \n"
2210	zeile=$(echo "$mopts" \| cut -c41-)
2211	while [[ "$zeile" != "" ]]
2212	do
2213	spalte1=""
2214	spalte2=$zeile
2215	printf "\| $spalte1$spalte2 \| \n"
2216	zeile=$(echo "$zeile" \| cut -c41-)
2217	done
2218	fi
2219
2220	spalte1="cpp directives:"; spalte2=$cpp_options
2221	printf "\| $spalte1$spalte2 \| \n"
2222	zeile=$(echo "$cpp_options" \| cut -c41-)
2223	while [[ "$zeile" != "" ]]
2224	do
2225	spalte1=""
2226	spalte2=$zeile
2227	printf "\| $spalte1$spalte2 \| \n"
2228	zeile=$(echo "$zeile" \| cut -c41-)
2229	done
2230
2231	spalte1="compiler options:"; spalte2="$fopts"
2232	printf "\| $spalte1$spalte2 \| \n"
2233	zeile=$(echo "$fopts" \| cut -c41-)
2234	while [[ "$zeile" != "" ]]
2235	do
2236	spalte1=""
2237	spalte2=$zeile
2238	printf "\| $spalte1$spalte2 \| \n"
2239	zeile=$(echo "$zeile" \| cut -c41-)
2240	done
2241
2242	spalte1="linker options:"; spalte2=$lopts
2243	printf "\| $spalte1$spalte2 \| \n"
2244	zeile=$(echo "$lopts" \| cut -c41-)
2245	while [[ "$zeile" != "" ]]
2246	do
2247	spalte1=""
2248	spalte2=$zeile
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$zeile" \| cut -c41-)
2251	done
2252
2253	spalte1="modules to be load:"; spalte2=$modules
2254	printf "\| $spalte1$spalte2 \| \n"
2255	zeile=$(echo "$modules" \| cut -c41-)
2256	while [[ "$zeile" != "" ]]
2257	do
2258	spalte1=""
2259	spalte2=$zeile
2260	printf "\| $spalte1$spalte2 \| \n"
2261	zeile=$(echo "$zeile" \| cut -c41-)
2262	done
2263
2264	spalte1="main program":; spalte2=$mainprog
2265	printf "\| $spalte1$spalte2 \| \n"
2266	else
2267	spalte1=executable:; spalte2=$executable
2268	printf "\| $spalte1$spalte2 \| \n"
2269	fi
2270	printf "\| \| \n"
2271	spalte1="base name of files":; spalte2=$fname
2272	printf "\| $spalte1$spalte2 \| \n"
2273	if [[ $fname != $afname ]]
2274	then
2275	spalte1="base name of input files":; spalte2=$afname
2276	printf "\| $spalte1$spalte2 \| \n"
2277	fi
2278	spalte1="INPUT control list":; spalte2=$input_list
2279	printf "\| $spalte1$spalte2 \| \n"
2280	spalte1="OUTPUT control list":; spalte2=$output_list
2281	printf "\| $spalte1$spalte2 \| \n"
2282
2283	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2284	then
2285	spalte1="memory demand / PE":; spalte2="$memory MB"
2286	printf "\| $spalte1$spalte2 \| \n"
2287	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2288	printf "\| $spalte1$spalte2 \| \n"
2289	fi
2290
2291	if [[ $do_compile = true ]]
2292	then
2293	printf "\| \| \n"
2294	printf "\| Files to be compiled: \| \n"
2295	zeile=$source_list
2296	while [[ "$zeile" != "" ]]
2297	do
2298	spalte3=$zeile
2299	printf "\| $spalte3 \| \n"
2300	zeile=$(echo "$zeile" \| cut -c61-)
2301	done
2302	fi
2303	printf "#--------------------------------------------------------------#"
2304
2305
2306
2307	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2308	if [[ $do_trace = true ]]
2309	then
2310	(( i = 0 ))
2311	while (( i < iin ))
2312	do
2313	(( i = i + 1 ))
2314	if (( i == 1 ))
2315	then
2316	printf "\n\n >>> INPUT-file assignments:\n"
2317	fi
2318	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2319	done
2320	(( i = 0 ))
2321	while (( i < iout ))
2322	do
2323	(( i = i + 1 ))
2324	if (( i == 1 ))
2325	then
2326	printf "\n\n >>> OUTPUT-file assignments:\n"
2327	fi
2328	printf "\n ${localout[$i]} : ${pathout[$i]}"
2329	done
2330	(( i = 0 ))
2331	while (( i < iic ))
2332	do
2333	(( i = i + 1 ))
2334	if (( i == 1 ))
2335	then
2336	printf "\n\n >>> INPUT-commands:\n"
2337	fi
2338	printf "\n ${in_command[$i]}"
2339	done
2340	(( i = 0 ))
2341	while (( i < ioc ))
2342	do
2343	(( i = i + 1 ))
2344	if (( i == 1 ))
2345	then
2346	printf "\n\n >>> OUTPUT-commands:\n"
2347	fi
2348	printf "\n ${out_command[$i]}"
2349	done
2350	fi
2351
2352
2353	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2354	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2355	then
2356	antwort=dummy
2357	printf "\n\n"
2358	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2359	do
2360	printf " >>> everything o.k. (y/n) ? "
2361	read antwort
2362	done
2363	if [[ $antwort = n \|\| $antwort = N ]]
2364	then
2365	locat=user_abort; (( iec = 0 )); exit
2366	fi
2367	if [[ $do_batch = true ]]
2368	then
2369	printf " >>> batch-job will be created and submitted"
2370	else
2371	if [[ $local_compile = false ]]
2372	then
2373	printf " >>> MRUN will now continue to execute on this machine"
2374	else
2375	printf " >>> a test compilation will now be carried out on this machine"
2376	fi
2377	fi
2378	fi
2379
2380
2381
2382
2383	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2384	# CHENDE AKTIONEN DURCHGEFUEHRT
2385	if [[ $do_batch = false ]]
2386	then
2387
2388
2389	# TEMPORAEREN KATALOG ERZEUGEN
2390	mkdir -p $TEMPDIR
2391	chmod go+rx $TEMPDIR
2392	tmpcreate=true
2393
2394	# set striping on lustre file system
2395	# if [[ $localhost = lcsgih ]]
2396	# then
2397	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2398	# lfs getstripe $TEMPDIR
2399	# fi
2400
2401
2402	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2403	# TEMPORAERES VERZEICHNIS KOPIEREN
2404	if [[ $do_compile = true ]]
2405	then
2406
2407	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2408	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2409	if [[ $localhost = nech ]]
2410	then
2411	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2412	if mkdir -p $TEMPDIR_COMPILE
2413	then
2414	printf "\n *** \"$TEMPDIR_COMPILE\" "
2415	printf "\n is generated as temporary directory for cross compiling\n"
2416	else
2417	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2418	printf "\n needed for cross compilation failed"
2419	locat=compile
2420	exit
2421	fi
2422	else
2423	TEMPDIR_COMPILE=$TEMPDIR
2424	fi
2425
2426
2427	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2428	line=""
2429	grep "%depository_path" $config_file > tmp_mrun
2430	while read line
2431	do
2432	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2433	then
2434	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2435	then
2436	global_depository_path=`echo $line \| cut -d" " -s -f2`
2437	fi
2438	fi
2439	done < tmp_mrun
2440
2441	line=""
2442	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2443	while read line
2444	do
2445	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2446	then
2447	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2448	then
2449	local_depository_path=`echo $line \| cut -d" " -s -f2`
2450	fi
2451	fi
2452	done < tmp_mrun
2453
2454	if [[ "$local_depository_path" = "" ]]
2455	then
2456	if [[ "$global_depository_path" != "" ]]
2457	then
2458	local_depository_path=$global_depository_path
2459	else
2460	printf "\n\n +++ no depository path found in configuration file"
2461	printf "\n for local host \"$localhost\" "
2462	printf "\n please set \"\%depository_path\" in configuration file\n"
2463	locat=config_file; exit
2464	fi
2465	fi
2466	eval local_depository_path=$local_depository_path
2467	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2468	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2469
2470
2471	basename=`print $mainprog \| cut -f1 -d"."`
2472	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2473	if [[ ! -f $make_depository ]]
2474	then
2475	printf "\n"
2476	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2477	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2478	else
2479	cp $make_depository $TEMPDIR_COMPILE
2480	cd $TEMPDIR_COMPILE
2481	tar -xf $make_depository > /dev/null 2>&1
2482	cd - > /dev/null
2483	fi
2484
2485	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2486
2487	else
2488
2489	cp $executable ${TEMPDIR}/a.out
2490
2491	fi
2492
2493
2494	# WECHSEL IN TEMPORAEREN KATALOG
2495	cd $TEMPDIR
2496	printf "\n *** changed to temporary directory: $TEMPDIR"
2497
2498
2499	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2500	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2501	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2502	# ERMITTELN
2503	(( i = 0 ))
2504	while (( i < iout ))
2505	do
2506	(( i = i + 1 ))
2507	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2508	then
2509	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2510	else
2511	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2512	fi
2513	done
2514
2515
2516	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2517	if [[ $do_compile = true ]]
2518	then
2519
2520
2521	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2522	printf "\n\n\n *** compilation starts \n$striche\n"
2523	printf " *** compilation with make using following options:\n"
2524	printf " make depository: $make_depository"
2525	if [[ "$mopts" != "" ]]
2526	then
2527	printf " make options: $mopts\n"
2528	fi
2529	printf " compilername: $compiler_name\n"
2530	printf " compiler options: $fopts\n"
2531	printf " preprocessor directives: $cpp_options \n"
2532	printf " linker options: $lopts \n"
2533	if [[ "$modules" != "" ]]
2534	then
2535	printf " modules to be load: $modules \n"
2536	fi
2537	printf " source code files: $source_list \n"
2538
2539	if [[ $localhost = nech ]]
2540	then
2541	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2542	cp $TEMPDIR_COMPILE/a.out .
2543	[[ $? != 0 ]] && compile_error=true
2544	rm -rf $TEMPDIR_COMPILE
2545	elif [[ $localhost = ibmh ]]
2546	then
2547	printf " compiler is called via ssh on \"plogin1\" \n"
2548	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2549	[[ ! -f a.out ]] && compile_error=true
2550	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2551	elif [[ $localhost = lcsgib ]]
2552	then
2553	printf " compiler is called via ssh on \"bicegate0\" \n"
2554	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2555	[[ ! -f a.out ]] && compile_error=true
2556	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2557	elif [[ $localhost = lcsgih ]]
2558	then
2559	printf " compiler is called via ssh on \"hicegate0\" \n"
2560	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2561	[[ ! -f a.out ]] && compile_error=true
2562	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2563	elif [[ $localhost = lcflow ]]
2564	then
2565	printf " compiler is called via ssh on \"flow\" \n"
2566	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2567	[[ ! -f a.out ]] && compile_error=true
2568	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2569	else
2570	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2571	[[ "$module_calls" != "" ]] && eval $module_calls
2572	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2573	fi
2574
2575	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2576	then
2577	printf "\n +++ error occured while compiling or linking"
2578	locat=compile
2579
2580	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2581	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2582	# then
2583	exit
2584	# else
2585	# locat=normal
2586	# fi
2587	else
2588	printf "$striche\n *** compilation finished \n"
2589	fi
2590	fi
2591
2592
2593	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2594	if [[ $local_compile = true ]]
2595	then
2596	cd $HOME
2597	rm -rf $TEMPDIR
2598	locat=local_compile; exit
2599	fi
2600
2601
2602	# BEREITSTELLEN DER INPUT-DATEIEN
2603	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2604	(( i = 0 ))
2605	while (( i < iin ))
2606	do
2607	(( i = i + 1 ))
2608	if (( i == 1 ))
2609	then
2610	printf "\n\n *** providing INPUT-files:\n$striche"
2611	fi
2612
2613
2614	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2615	if [[ "${transin[$i]}" = unavailable ]]
2616	then
2617	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2618	then
2619	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2620	printf "\n is not available!"
2621	else
2622	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2623	printf "\n is not available!"
2624	fi
2625	continue
2626	fi
2627
2628	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2629	files_for_pes=false; datentyp=file
2630	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2631	then
2632	files_for_pes=true; datentyp=directory
2633	actionin[$i]=""
2634	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2635	then
2636	actionin[$i]=""
2637	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2638	then
2639	files_for_pes=true; datentyp=directory
2640	actionin[$i]="ar"
2641	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2642	then
2643	actionin[$i]="ar"
2644	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2645	then
2646	files_for_pes=true; datentyp=directory
2647	actionin[$i]="fl"
2648	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2649	then
2650	actionin[$i]="fl"
2651	fi
2652
2653	if [[ $files_for_pes = true ]]
2654	then
2655	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2656	else
2657	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2658	fi
2659
2660	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2661	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2662	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2663	# SERVER ZU HOLEN
2664	if [[ "${actionin[$i]}" = fl ]]
2665	then
2666	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2667	if [[ $files_for_pes = false ]]
2668	then
2669	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2670	then
2671	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2672	got_tmp[$i]=true
2673	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2674	then
2675	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2676	printf "\n *** trying to use backup copy in \"$WORK\" "
2677	cp $WORK/${frelin[$i]} ${localin[$i]}
2678	else
2679	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2680	printf "\n or \"$tmp_data_catalog\" does not exist!"
2681	printf "\n *** trying to get copy from archive"
2682	actionin[$i]=ar
2683	fi
2684	else
2685	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2686	then
2687	mkdir ${localin[$i]}
2688	cd $tmp_data_catalog/${frelin[$i]}
2689	for file in $(ls *)
2690	do
2691	ln $file $TEMPDIR/${localin[$i]}
2692	done
2693	cd $TEMPDIR
2694	got_tmp[$i]=true
2695	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2696	then
2697	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2698	printf "\n *** trying to use backup copy in \"$WORK\" "
2699	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2700	else
2701	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2702	printf "\n or \"$tmp_data_catalog\" does not exist!"
2703	printf "\n *** trying to get copy from archive"
2704	actionin[$i]=ar
2705	fi
2706	fi
2707	fi
2708
2709
2710	# DATEI LIEGT AUF ARCHIV-SERVER
2711	if [[ "${actionin[$i]}" = ar ]]
2712	then
2713
2714	if [[ $files_for_pes = false ]]
2715	then
2716	printf "\n file will be restored from archive-system ($archive_system)!"
2717	else
2718	printf "\n directory will be restored from archive-system ($archive_system)!"
2719	fi
2720
2721	file_restored=false
2722
2723	if [[ $archive_system = asterix ]]
2724	then
2725	do_stagein=true
2726	(( stagein_anz = 0 ))
2727	while [[ $do_stagein = true ]]
2728	do
2729	if [[ $files_for_pes = false ]]
2730	then
2731	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2732	else
2733	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2734	fi
2735	cat STAGEIN_OUTPUT
2736	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2737	then
2738	file_restored=true
2739	do_stagein=false
2740	else
2741	(( stagein_anz = stagein_anz + 1 ))
2742	if (( stagein_anz == 10 ))
2743	then
2744	printf "\n +++ stagein stoped after 10 tries"
2745	locat=stage
2746	exit
2747	fi
2748	printf "\n +++ restoring from archive failed, trying again:"
2749	sleep 900
2750	fi
2751	done
2752	elif [[ $archive_system = DMF ]]
2753	then
2754	if [[ $files_for_pes = false ]]
2755	then
2756	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2757	locat=DMF
2758	exit
2759	else
2760	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2761	cp -r $ARCHIVE/${frelin[$i]} $PWD
2762	file_restored=true
2763	fi
2764	elif [[ $archive_system = tivoli ]]
2765	then
2766	if [[ $files_for_pes = false ]]
2767	then
2768	if [[ $localhost = lcsgih ]]
2769	then
2770	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2771	else
2772	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2773	fi
2774	else
2775	(( inode = 0 ))
2776	while (( inode < nodes ))
2777	do
2778	if [[ $localhost = lcsgih ]]
2779	then
2780	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2781	else
2782	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2783	fi
2784	(( inode = inode + 1 ))
2785	done
2786	fi
2787	file_restored=true
2788	elif [[ $archive_system = ut ]]
2789	then
2790	if [[ $files_for_pes = false ]]
2791	then
2792	cp $UT/${frelin[$i]} .
2793	else
2794	(( inode = 0 ))
2795	while (( inode < nodes ))
2796	do
2797	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2798	(( inode = inode + 1 ))
2799	done
2800	fi
2801	file_restored=true
2802	else
2803	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2804	locat=rearchive
2805	exit
2806	fi
2807
2808	if [[ $file_restored = true ]]
2809	then
2810
2811	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2812	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2813	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2814	if [[ $files_for_pes = false ]]
2815	then
2816	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2817	else
2818	mkdir $tmp_data_catalog/${frelin[$i]}
2819	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2820	fi
2821	got_tmp[$i]=true
2822
2823	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2824	mv ${frelin[$i]} ${localin[$i]}
2825
2826	fi
2827	fi
2828
2829
2830	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2831	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2832	then
2833
2834	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2835	then
2836
2837	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2838	printf "\n file will be provided for $numprocs processors"
2839	mkdir ${localin[$i]}
2840	ival=$numprocs
2841	(( ii = 0 ))
2842	while (( ii <= ival-1 ))
2843	do
2844	if (( ii < 10 ))
2845	then
2846	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2847	elif (( ii < 100 ))
2848	then
2849	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2850	elif (( ii < 1000 ))
2851	then
2852	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2853	else
2854	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2855	fi
2856	(( ii = ii + 1 ))
2857	done
2858
2859	else
2860
2861	if [[ $files_for_pes = true ]]
2862	then
2863
2864	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2865	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2866	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2867	# PER MOVE UMBENANNT WERDEN
2868	printf "\n providing $numprocs files for the respective processors"
2869	mkdir ${localin[$i]}
2870	if [[ $link_local_input = true ]]
2871	then
2872	printf " using ln -f\n"
2873	cd ${absnamein[$i]}
2874	for file in $(ls *)
2875	do
2876	ln -f $file ${localin[$i]}
2877	done
2878	cd $TEMPDIR
2879	fi
2880	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2881	if [[ ! -f "${localin[$i]}/_0000" ]]
2882	then
2883	if [[ $link_local_input = true ]]
2884	then
2885	printf " ln failed for .../_0000, using cp...\n"
2886	fi
2887	cp -r ${absnamein[$i]}/* ${localin[$i]}
2888	fi
2889
2890	else
2891	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2892	if [[ $link_local_input = true ]]
2893	then
2894	printf " using ln -f\n"
2895	ln -f ${absnamein[$i]} ${localin[$i]}
2896	fi
2897	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2898	if [[ ! -f "${localin[$i]}" ]]
2899	then
2900	if [[ $link_local_input = true ]]
2901	then
2902	printf " ln failed, using cp...\n"
2903	fi
2904	cp ${absnamein[$i]} ${localin[$i]}
2905	fi
2906	fi
2907	fi
2908	fi
2909
2910	done
2911	if (( i != 0 ))
2912	then
2913	printf "\n$striche\n *** all INPUT-files provided \n"
2914	fi
2915
2916
2917	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2918	(( i = 0 ))
2919	while (( i < iic ))
2920	do
2921	(( i = i + 1 ))
2922	if (( i == 1 ))
2923	then
2924	printf "\n\n *** execution of INPUT-commands:\n$striche"
2925	fi
2926	printf "\n >>> ${in_command[$i]}"
2927	eval ${in_command[$i]}
2928	if (( i == iic ))
2929	then
2930	printf "\n$striche\n"
2931	fi
2932	done
2933
2934
2935	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2936	cpurest=${cpumax}.
2937
2938
2939	# START DVR STREAMING SERVER
2940	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2941	then
2942	if [[ "$dvr_server" != "" ]]
2943	then
2944
2945	printf "\n\n *** preparing the dvr streaming server configuration file"
2946
2947	# Check, if a dvr server is already running
2948	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2949	if [[ "$running_dvrserver_id" != "" ]]
2950	then
2951
2952	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2953	printf "\n This server is used instead starting a new one!"
2954	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2955
2956	else
2957
2958	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2959	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2960	then
2961	cp ${PALM_BIN}/.dvrserver.config .
2962
2963	# Entering the BASEDIR, UID and GID into this file
2964	user_id=`id -u`
2965	group_id=`id -g`
2966	# & is needed as seperator, because TEMPDIR contains /
2967	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2968	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2969	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2970	mv .dvrserver.3 .dvrserver.config
2971	rm .dvrserver.1 .dvrserver.2
2972
2973	# Start dvr server in background, get his id and print on terminal
2974	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2975	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2976	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2977	local_dvrserver_running=.TRUE.
2978	else
2979	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2980	printf "\n \"$PALM_BIN\" "
2981	locat=dvr
2982	exit
2983	fi
2984
2985	fi
2986
2987	else
2988	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2989	fi
2990	fi
2991
2992
2993	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2994	# LESEN VON PALM)
2995	cat > ENVPAR << %%END%%
2996	&envpar run_identifier = '$fname', host = '$localhost',
2997	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2998	maximum_cpu_time_allowed = ${cpumax}.,
2999	revision = '$global_revision',
3000	local_dvrserver_running = $local_dvrserver_running /
3001
3002	%%END%%
3003
3004
3005	# PROGRAMMSTART
3006	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3007	PATH=$PATH:$TEMPDIR
3008
3009	# MPI debug option (argument checking, slows down execution due to increased latency)
3010	if [[ "$mpi_debug" = true ]]
3011	then
3012	export MPI_CHECK_ARGS=1
3013	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3014	fi
3015
3016	if [[ "$totalview" = true ]]
3017	then
3018	printf "\n *** totalview debugger will be used"
3019	tv_opt="-tv"
3020	else
3021	tv_opt=""
3022	fi
3023
3024	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3025	then
3026	if [[ "$ENVIRONMENT" = BATCH ]]
3027	then
3028	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3029	then
3030	printf "\n +++ debug is allowed in interactive mode only"
3031	locat=debug
3032	exit
3033	fi
3034	fi
3035	if [[ $localhost = decalpha ]]
3036	then
3037	dxladebug a.out
3038	elif [[ $localhost = ibmh ]]
3039	then
3040
3041	# SETUP THE IBM MPI ENVIRONMENT
3042	export MP_SHARED_MEMORY=yes
3043	export AIXTHREADS_SCOPE=S
3044	export OMP_NUM_THREADS=$threads_per_task
3045	export AUTHSTATE=files
3046	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3047
3048	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3049	export MP_ADAPTER_USE=shared
3050	export MP_CPU_USE=multiple
3051	export MP_TIMEOUT=1200
3052
3053	unset MP_TASK_AFFINITY
3054
3055	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3056	#(( ii = 1 ))
3057	#while (( ii <= $numprocs ))
3058	#do
3059	# echo $localhost_realname >> hostfile
3060	# (( ii = ii + 1 ))
3061	#done
3062	#export MP_HOSTFILE=hostfile
3063
3064	if [[ "$LOADLBATCH" = yes ]]
3065	then
3066	totalview poe a.out $ROPTS
3067	else
3068	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3069	export TVDSVRLAUNCHCMD=ssh
3070	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3071	fi
3072	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3073	then
3074	# CURRENTLY NO DEBUGGER ON LCSGI
3075	if [[ $run_coupled_model = true ]]
3076	then
3077	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3078	locat=debug
3079	exit
3080	else
3081	echo "no_coupling" > runfile_atmos
3082	fi
3083	(( ii = $numprocs / $threads_per_task ))
3084	export OMP_NUM_THREADS=$threads_per_task
3085	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3086	if [[ $threads_per_task != 1 ]]
3087	then
3088	printf "\n threads per task: $threads_per_task"
3089	fi
3090	printf "\n\n"
3091	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3092	then
3093	# export MPI_LAUNCH_TIMEOUT=360
3094	if [[ "$totalview" = true ]]
3095	then
3096	printf "\n running totalview debugger"
3097	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3098	else
3099	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3100	fi
3101	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3102	then
3103	# ulimit -s 300000 # A too large stack size causes problems
3104	# export MV2_NUM_PORTS=2
3105	# export MV2_CPU_MAPPING=0:1:2:3
3106	if [[ "$totalview" = true ]]
3107	then
3108	printf "\n running totalview debugger"
3109	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3110	else
3111	mpiexec ./a.out $ROPTS < runfile_atmos
3112	fi
3113	fi
3114	else
3115	printf "\n +++ no debug available on \"$localhost\" "
3116	printf "\n or not implemented in mrun so far"
3117	locat=debug
3118	exit
3119	fi
3120
3121	# end debug mode
3122	else
3123
3124	# normal execution
3125	if [[ -n $numprocs ]]
3126	then
3127	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3128	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3129	then
3130	# SETUP THE IBM MPI ENVIRONMENT
3131	if [[ $host != ibmh && $host != ibmkisti ]]
3132	then
3133	export MP_SHARED_MEMORY=yes
3134	export AIXTHREAD_SCOPE=S
3135	export OMP_NUM_THREADS=$threads_per_task
3136	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3137	export AUTHSTATE=files
3138	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3139	# export MP_PRINTENV=yes
3140
3141	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3142	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3143	export MP_WAIT_MODE=poll
3144	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3145	fi
3146
3147	if [[ $host = ibmkisti ]]
3148	then
3149	export LANG=en_US
3150	export MP_SHARED_MEMORY=yes
3151	if [[ $threads_per_task = 1 ]]
3152	then
3153	export MP_SINGLE_THREAD=yes
3154	export MEMORY_AFFINITY=MCM
3155	else
3156	export OMP_NUM_THREADS=$threads_per_task
3157	fi
3158	fi
3159
3160	if [[ "$LOADLBATCH" = yes ]]
3161	then
3162	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3163	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3164	then
3165	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3166	else
3167	if [[ $run_coupled_model = false ]]
3168	then
3169	if [[ "$ocean_file_appendix" = true ]]
3170	then
3171	echo "precursor_ocean" > runfile_atmos
3172	else
3173	echo "precursor_atmos" > runfile_atmos
3174	fi
3175	else
3176	(( iia = $numprocs_atmos / $threads_per_task ))
3177	(( iio = $numprocs_ocean / $threads_per_task ))
3178	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3179	printf "\n using $coupled_mode coupling"
3180	printf "\n\n"
3181	echo "coupled_run $iia $iio" > runfile_atmos
3182	fi
3183	poe ./a.out $ROPTS < runfile_atmos
3184	fi
3185	else
3186	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3187	then
3188	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3189	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3190	then
3191	if [[ -f $hostfile ]]
3192	then
3193	cp $hostfile hostfile
3194	else
3195	(( ii = 1 ))
3196	while (( ii <= $numprocs ))
3197	do
3198	echo $localhost_realname >> hostfile
3199	(( ii = ii + 1 ))
3200	done
3201	fi
3202	export MP_HOSTFILE=hostfile
3203	if [[ $run_coupled_model = false ]]
3204	then
3205	if [[ "$ocean_file_appendix" = true ]]
3206	then
3207	echo "precursor_ocean" > runfile_atmos
3208	else
3209	echo "precursor_atmos" > runfile_atmos
3210	fi
3211	else
3212	(( iia = $numprocs_atmos / $threads_per_task ))
3213	(( iio = $numprocs_ocean / $threads_per_task ))
3214	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3215	printf "\n using $coupled_mode coupling"
3216	printf "\n\n"
3217	echo "coupled_run $iia $iio" > runfile_atmos
3218	fi
3219	if [[ $localhost = ibmy ]]
3220	then
3221	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3222	else
3223	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3224	fi
3225
3226	else
3227	if [[ "$host_file" = "" ]]
3228	then
3229	printf "\n +++ no hostfile given in configuration file"
3230	locat=config_file
3231	exit
3232	else
3233	eval host_file=$host_file
3234	fi
3235	export MP_HOSTFILE=$host_file
3236	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3237	fi
3238	fi
3239	elif [[ $host = nech \|\| $host = necriam ]]
3240	then
3241	(( ii = nodes ))
3242	if [[ $ii = 1 ]]
3243	then
3244	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3245	export MPIPROGINF=YES
3246	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3247	echo "*** execution on single node with mpirun"
3248	mpirun -np $numprocs ./a.out $ROPTS
3249	else
3250	(( i = 0 ))
3251	while (( i < ii ))
3252	do
3253	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3254	(( i = i + 1 ))
3255	done
3256
3257	echo "#!/bin/sh" > mpi_exec_shell
3258	echo " " >> mpi_exec_shell
3259	echo "set -u" >> mpi_exec_shell
3260	echo "F_ERRCNT=0" >> mpi_exec_shell
3261	echo "MPIPROGINV=YES" >> mpi_exec_shell
3262	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3263	echo "cpurest=$cpurest" >> mpi_exec_shell
3264	echo "fname=$fname" >> mpi_exec_shell
3265	echo "localhost=$localhost" >> mpi_exec_shell
3266	echo "return_addres=$return_addres" >> mpi_exec_shell
3267	echo "return_username=$return_username" >> mpi_exec_shell
3268	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3269	echo "write_binary=$write_binary" >> mpi_exec_shell
3270	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3271	echo " " >> mpi_exec_shell
3272	echo "export F_ERRCNT" >> mpi_exec_shell
3273	echo "export MPIPROGINV" >> mpi_exec_shell
3274	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3275	echo "export cpurest" >> mpi_exec_shell
3276	echo "export fname" >> mpi_exec_shell
3277	echo "export localhost" >> mpi_exec_shell
3278	echo "export return_addres" >> mpi_exec_shell
3279	echo "export return_username" >> mpi_exec_shell
3280	echo "export tasks_per_node" >> mpi_exec_shell
3281	echo "export write_binary" >> mpi_exec_shell
3282	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3283	echo " " >> mpi_exec_shell
3284	echo "exec ./a.out" >> mpi_exec_shell
3285
3286	chmod u+x mpi_exec_shell
3287	export MPIPROGINF=YES
3288	mpirun -f multinode_config &
3289	wait
3290
3291	fi
3292	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3293	then
3294
3295	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3296	# DOES NOT EXIST
3297	if [[ $host != lcsgih && $host != lcsgib ]]
3298	then
3299	if [[ -f $hostfile ]]
3300	then
3301	cp $hostfile hostfile
3302	(( ii = $numprocs / $threads_per_task ))
3303	else
3304	(( ii = 1 ))
3305	while (( ii <= $numprocs / $threads_per_task ))
3306	do
3307	echo $localhost_realname >> hostfile
3308	(( ii = ii + 1 ))
3309	done
3310	fi
3311	eval zeile=\"`head -n $ii hostfile`\"
3312	printf "\n *** running on: $zeile"
3313	fi
3314
3315	(( ii = $numprocs / $threads_per_task ))
3316	export OMP_NUM_THREADS=$threads_per_task
3317	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3318	if [[ $threads_per_task != 1 ]]
3319	then
3320	# increase stack size to unlimited, because large runs
3321	# may abort otherwise
3322	ulimit -Ss unlimited
3323	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3324	fi
3325	if [[ $run_coupled_model = false ]]
3326	then
3327	if [[ "$ocean_file_appendix" = true ]]
3328	then
3329	echo "precursor_ocean" > runfile_atmos
3330	else
3331	echo "precursor_atmos" > runfile_atmos
3332	fi
3333	printf "\n\n"
3334	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3335	then
3336	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3337	then
3338	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3339	# export MPI_DSM_DISTRIBUTE=1
3340	# MPI_DSM_CPULIST: pin MPI processes to cores
3341	if [[ $use_openmp = false ]]
3342	then
3343	if [[ "$sgi_feature" = ice2 ]]
3344	then
3345	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3346	else
3347	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3348	fi
3349	else
3350	unset MPI_DSM_CPULIST
3351	fi
3352	# MPI_IB_RAILS: use both IB rails on ICE2
3353	export MPI_BUFS_PER_HOST=512
3354	export MPI_IB_RAILS=2
3355	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3356	export MPI_CONNECTIONS_THRESHOLD=8192
3357	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3358	export MPI_TYPE_DEPTH=20
3359	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3360	export MPI_GROUP_MAX=64
3361	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3362	if [[ $use_openmp = true ]]
3363	then
3364	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3365	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3366	else
3367	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3368	fi
3369
3370	# next is test for openmp usage
3371	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3372	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3373	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3374	then
3375	export MV2_NUM_PORTS=2
3376	# The default setting of MV2_CPU_MAPPING gives best results
3377	# export MV2_ENABLE_AFFINITY=1
3378	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3379	# if [[ "$sgi_feature" = ice2 ]]
3380	# then
3381	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3382	# else
3383	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3384	# fi
3385	if [[ $use_openmp = true ]]
3386	then
3387	unset MV2_CPU_MAPPING
3388	export MV2_ENABLE_AFFINITY=0
3389	fi
3390	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3391	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3392	if [[ $use_openmp = true ]]
3393	then
3394	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3395	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3396	else
3397	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3398	fi
3399	elif [[ "$mpilib" = impi ]]
3400	then
3401	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3402	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3403	fi
3404	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3405	then
3406	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3407	elif [[ $host = lcflow ]]
3408	then
3409	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3410	else
3411	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3412	fi
3413	else
3414
3415	# currently there is no full MPI-2 support on ICE and XT4
3416	(( iia = $numprocs_atmos / $threads_per_task ))
3417	(( iio = $numprocs_ocean / $threads_per_task ))
3418	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3419	printf "\n using $coupled_mode coupling"
3420	printf "\n\n"
3421
3422	if [[ $coupled_mode = "mpi2" ]]
3423	then
3424	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3425	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3426	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3427	then
3428
3429	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3430	then
3431	# export MPI_LAUNCH_TIMEOUT=360
3432	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3433	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3434	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3435	then
3436	# ulimit -s 300000 # A too large stack size causes problems
3437	# export MV2_NUM_PORTS=2
3438	# export MV2_CPU_MAPPING=0:1:2:3
3439	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3440	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3441	fi
3442
3443	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3444	then
3445
3446	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3447	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3448
3449	else
3450	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3451	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3452	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3453	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3454	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3455	fi
3456	wait
3457
3458	else
3459
3460	echo "coupled_run $iia $iio" > runfile_atmos
3461	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3462	then
3463
3464	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3465	then
3466	# export MPI_LAUNCH_TIMEOUT=360
3467	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3468	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3469	then
3470	# ulimit -s 300000 # A too large stack size causes problems
3471	# export MV2_NUM_PORTS=2
3472	# export MV2_CPU_MAPPING=0:1:2:3
3473	mpiexec ./a.out $ROPTS < runfile_atmos
3474	fi
3475
3476	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3477	then
3478
3479	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3480
3481	elif [[ $host = lck \|\| $host = lckordi ]]
3482	then
3483	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3484	fi
3485	wait
3486	fi
3487
3488	fi
3489	elif [[ $host = decalpha ]]
3490	then
3491	dmpirun -np $numprocs a.out $ROPTS
3492	elif [[ $host = lckyoto ]]
3493	then
3494	set -xv
3495	export P4_RSHCOMMAND=plesh
3496	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3497	if [[ "$ENVIRONMENT" = BATCH ]]
3498	then
3499	if [[ "$cond2" = fujitsu ]]
3500	then
3501	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3502	elif [[ "cond2" = pgi ]]
3503	then
3504	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3505	else
3506	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3507	fi
3508	else
3509	if [[ "$cond2" = "" ]]
3510	then
3511	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3512	else
3513	mpirun -np $numprocs ./a.out $ROPTS
3514	fi
3515	fi
3516	set +xv
3517	elif [[ $host = lctit ]]
3518	then
3519	export OMP_NUM_THREADS=$threads_per_task
3520	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3521	if [[ "$threads_per_task" != 1 ]]
3522	then
3523	export MV2_ENABLE_AFFINITY=0
3524	fi
3525	echo "----- PBS_NODEFILE content:"
3526	cat $PBS_NODEFILE
3527	echo "-----"
3528	(( ii = $numprocs / $threads_per_task ))
3529	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3530	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3531	else
3532	mpprun -n $numprocs a.out $ROPTS
3533	fi
3534	[[ $? != 0 ]] && execution_error=true
3535
3536
3537	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3538	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3539	then
3540	apprentice
3541	fi
3542	else
3543	a.out $ROPTS
3544	fi
3545	fi
3546	if [[ $? != 0 \|\| $execution_error = true ]]
3547	then
3548
3549	# ABBRUCH BEI LAUFZEITFEHLER
3550	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3551	printf "\n +++ runtime error occured"
3552	locat=execution
3553	exit
3554	else
3555	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3556	printf "\n$striche\n *** execution finished \n"
3557
3558	# Stop the dvr streaming server and process the dvr output in order
3559	# to create dvrs- and html-files containing all streams
3560	if [[ "$dvrserver_id" != "" ]]
3561	then
3562	kill $dvrserver_id
3563	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3564
3565	# If there is a directory, data have been output by the
3566	# streaming server. Otherwise, user has chosen dvrp_output=local
3567	if [[ -d DATA_DVR ]]
3568	then
3569
3570	# Add the current dvr configuration file to the dvr output
3571	# directory
3572	cp .dvrserver.config DATA_DVR
3573
3574	# Process the dvr output (option -s for also generating
3575	# sequence mode data)
3576	process_dvr_output -d DATA_DVR -f $fname -s
3577
3578	else
3579
3580	# Process the local output
3581	process_dvr_output -l -d DATA_DVR -f $fname
3582
3583	fi
3584
3585	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3586	then
3587
3588	# Process dvr output generated in local mode (dvrp_output=local)
3589	process_dvr_output -l -d DATA_DVR -f $fname
3590
3591	fi
3592	fi
3593
3594
3595
3596	# Call of combine_plot_fields in order to merge single files written
3597	# by each PE into one file.
3598	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3599	then
3600	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3601	printf "\n 2d- and/or 3d-data may be incomplete!"
3602	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3603	else
3604	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3605	combine_plot_fields${block}.x
3606	fi
3607
3608
3609
3610	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3611	(( i = 0 ))
3612	while (( i < ioc ))
3613	do
3614	(( i = i + 1 ))
3615	if (( i == 1 ))
3616	then
3617	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3618	fi
3619	printf "\n >>> ${out_command[$i]}"
3620	eval ${out_command[$i]}
3621	if (( i == ioc ))
3622	then
3623	printf "\n$striche\n"
3624	fi
3625	done
3626
3627
3628	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3629	if [[ $do_trace = true ]]
3630	then
3631	printf "\n\n"
3632	ls -al
3633	fi
3634
3635
3636
3637	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3638	(( i = 0 ))
3639	while (( i < iout ))
3640	do
3641	(( i = i + 1 ))
3642	if (( i == 1 ))
3643	then
3644	printf "\n\n *** saving OUTPUT-files:\n$striche"
3645	fi
3646
3647	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3648	files_for_pes=false; filetyp=file
3649	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3650	then
3651	files_for_pes=true; filetyp=directory
3652	actionout[$i]=""
3653	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3654	then
3655	actionout[$i]=""
3656	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3657	then
3658	files_for_pes=true; filetyp=directory
3659	actionout[$i]="ar"
3660	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3661	then
3662	actionout[$i]="ar"
3663	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3664	then
3665	files_for_pes=true; filetyp=directory
3666	actionout[$i]="fl"
3667	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3668	then
3669	actionout[$i]="fl"
3670	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3671	then
3672	files_for_pes=true; filetyp=directory
3673	actionout[$i]="tr"
3674	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3675	then
3676	actionout[$i]="tr"
3677	fi
3678
3679	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3680	then
3681	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3682	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3683	then
3684	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3685	else
3686
3687
3688	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3689	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3690	# REMOTE-RECHNUNGEN
3691	if [[ "${actionout[$i]}" = tr ]]
3692	then
3693	if [[ $localhost != $fromhost ]]
3694	then
3695	if [[ $files_for_pes = false ]]
3696	then
3697	cps=""
3698	cst=""
3699	else
3700	cps=-c
3701	cst="/"
3702	fi
3703	if [[ $localhost = nech ]]
3704	then
3705
3706	# TRANSFER IN EIGENSTAENDIGEM JOB
3707	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3708	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3709	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3710	if [[ $files_for_pes = false ]]
3711	then
3712	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3713	else
3714	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3715	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3716	fi
3717
3718	echo "set -x" > transfer_${localout[$i]}
3719	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3720
3721	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3722	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3723	printf "\n or higher cycle\n"
3724	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3725
3726	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3727
3728	if [[ $localhost = nech ]]
3729	then
3730	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3731	else
3732	if [[ "$LOGNAME" = b323013 ]]
3733	then
3734	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3735	else
3736	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3737	fi
3738	fi
3739
3740	else
3741
3742	# TRANSFER INNERHALB DIESES JOBS
3743	transfer_failed=false
3744	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3745	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3746	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3747	[[ $? != 0 ]] && transfer_failed=true
3748
3749	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3750	# LOKALER MASCHINE ANLEGEN
3751	if [[ $transfer_failed = true ]]
3752	then
3753	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3754	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3755
3756	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3757	# ANLEGEN.
3758	eval local_catalog=${pathout[$i]}
3759	if [[ ! -d $local_catalog ]]
3760	then
3761	printf " *** local directory does not exist. Trying to create:\n"
3762	printf " $local_catalog \n"
3763	mkdir -p $local_catalog
3764	fi
3765	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3766	transfer_problems=true
3767	fi
3768	fi
3769	else
3770
3771	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3772	actionout[$i]=""
3773	fi
3774	fi
3775
3776
3777	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3778	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3779	# REMOTE-RECHNUNGEN
3780	if [[ "${actionout[$i]}" = tra ]]
3781	then
3782	if [[ $localhost != $fromhost ]]
3783	then
3784	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3785	then
3786
3787	# TRANSFER IN EIGENSTAENDIGEM JOB
3788	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3789	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3790	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3791	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3792
3793	echo "set -x" > transfer_${localout[$i]}
3794	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3795
3796	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3797	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3798	printf "\n or higher cycle\n"
3799	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3800
3801	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3802
3803	if [[ $localhost = nech ]]
3804	then
3805	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3806	else
3807	if [[ $LOGNAME = b323013 ]]
3808	then
3809	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3810	else
3811	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3812	fi
3813	fi
3814
3815	else
3816
3817	# TRANSFER INNERHALB DIESES JOBS
3818	transfer_failed=false
3819	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3820	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3821	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3822	[[ $? != 0 ]] && transfer_failed=true
3823
3824	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3825	# LOKALER MASCHINE ANLEGEN
3826	if [[ $transfer_failed = true ]]
3827	then
3828	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3829	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3830
3831	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3832	# ANLEGEN
3833	eval local_catalog=${pathout[$i]}
3834	if [[ ! -d $local_catalog ]]
3835	then
3836	printf " *** local directory does not exist. Trying to create:\n"
3837	printf " $local_catalog \n"
3838	mkdir -p $local_catalog
3839	fi
3840
3841	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3842	transfer_problems=true
3843	fi
3844	fi
3845	else
3846
3847	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3848	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3849	actionout[$i]=a
3850	fi
3851	fi
3852
3853
3854	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3855	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3856	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3857	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3858	if [[ "${actionout[$i]}" = fl ]]
3859	then
3860	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3861	chmod g+rx $tmp_data_catalog
3862	if [[ $files_for_pes = false ]]
3863	then
3864	printf "\n >>> OUTPUT: ${localout[$i]} to"
3865	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3866	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3867	else
3868	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3869	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3870	mkdir $tmp_data_catalog/${frelout[$i]}
3871	cd ${localout[$i]}
3872	for file in $(ls *)
3873	do
3874	ln -f $file $tmp_data_catalog/${frelout[$i]}
3875	done
3876	cd $TEMPDIR
3877	fi
3878
3879
3880	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3881	if [[ $store_on_archive_system = true ]]
3882	then
3883
3884	if [[ $archive_system = asterix ]]
3885	then
3886	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3887	if [[ $files_for_pes = false ]]
3888	then
3889	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3890	else
3891	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3892	fi
3893	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3894	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3895	echo "then" >> archive_${frelout[$i]}
3896	echo " do_stageout=false" >> archive_${frelout[$i]}
3897	echo "else" >> archive_${frelout[$i]}
3898	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3899	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3900	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3901	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3902	if [[ $files_for_pes = false ]]
3903	then
3904	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3905	else
3906	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3907	fi
3908	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3909	echo "fi" >> archive_${frelout[$i]}
3910	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3911	elif [[ $archive_system = DMF ]]
3912	then
3913	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3914	if [[ $files_for_pes = false ]]
3915	then
3916	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3917	locat=DMF
3918	exit
3919	else
3920	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3921	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3922	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3923	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3924	fi
3925	elif [[ $archive_system = tivoli ]]
3926	then
3927	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3928	if [[ $files_for_pes = false ]]
3929	then
3930	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3931	echo "set -x" >> archive_${frelout[$i]}
3932	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3933	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3934	else
3935
3936	echo "set -x" >> archive_${frelout[$i]}
3937	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3938	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3939	cd $tmp_data_catalog
3940	all_files=`ls -1 ${frelout[$i]}/*`
3941	cd - > /dev/null
3942	(( inode = 0 ))
3943	(( tp1 = tasks_per_node + 1 ))
3944	while (( inode < nodes ))
3945	do
3946	# echo "*** all_files = \"$all_files\" "
3947	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3948	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3949	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3950	# echo "*** files = \"$files\" "
3951	# echo "*** all_files = \"$all_files\" "
3952	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3953	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3954	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3955	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3956	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3957	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3958	(( inode = inode + 1 ))
3959	done
3960	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3961	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3962	fi
3963	elif [[ $archive_system = ut ]]
3964	then
3965	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3966	if [[ $files_for_pes = false ]]
3967	then
3968	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3969	echo "set -x" >> archive_${frelout[$i]}
3970	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3971	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3972	else
3973
3974	echo "set -x" >> archive_${frelout[$i]}
3975	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3976	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3977	cd $tmp_data_catalog
3978	all_files=`ls -1 ${frelout[$i]}/*`
3979	cd - > /dev/null
3980	(( inode = 0 ))
3981	(( tp1 = tasks_per_node + 1 ))
3982	while (( inode < nodes ))
3983	do
3984	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3985	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3986	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3987	(( inode = inode + 1 ))
3988	done
3989	fi
3990	elif [[ $archive_system = none ]]
3991	then
3992	printf " +++ archiving on $localhost not available!\n"
3993	fi
3994
3995	if [[ $archive_system != none ]]
3996	then
3997	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3998	then
3999	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4000	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4001	elif [[ $localhost = nech ]]
4002	then
4003	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4004	fi
4005	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4006	fi
4007	else
4008	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4009	fi
4010
4011
4012	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4013	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4014	if [[ $files_for_pes = false ]]
4015	then
4016	cat /dev/null > ${pathout[$i]}
4017	else
4018	mkdir -p ${pathout[$i]}
4019	fi
4020
4021	fi
4022
4023
4024	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4025	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4026	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4027	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4028	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4029	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4030	if [[ "${actionout[$i]}" = ar ]]
4031	then
4032	if [[ $files_for_pes = false ]]
4033	then
4034	printf "\n >>> OUTPUT: ${localout[$i]} to"
4035	printf "\n ${pathout[$i]}"
4036	printf "\n File will be copied to archive-system ($archive_system) !\n"
4037	else
4038	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4039	printf "\n ${pathout[$i]}"
4040	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4041	fi
4042	mv ${localout[$i]} ${frelout[$i]}
4043
4044	file_saved=false
4045
4046	if [[ $archive_system = asterix ]]
4047	then
4048	do_stageout=true
4049	(( stageout_anz = 0 ))
4050	while [[ $do_stageout = true ]]
4051	do
4052	if [[ $files_for_pes = false ]]
4053	then
4054	stageout ${frelout[$i]} > STAGE_OUTPUT
4055	else
4056	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4057	fi
4058	cat STAGE_OUTPUT
4059	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4060	then
4061	file_saved=true
4062	do_stageout=false
4063	else
4064	if [[ $files_for_pes = false ]]
4065	then
4066	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4067	else
4068	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4069	fi
4070	(( stageout_anz = stageout_anz + 1 ))
4071	if (( stageout_anz == 10 ))
4072	then
4073	printf "\n +++ stoped after 10 unsuccessful tries!"
4074	archive_save=false
4075	do_stageout=false
4076	else
4077	printf "\n *** new try to store on archive after 15 min:"
4078	sleep 900
4079	fi
4080	fi
4081	done
4082	elif [[ $archive_system = DMF ]]
4083	then
4084	if [[ $files_for_pes = false ]]
4085	then
4086	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4087	locat=DMF
4088	exit
4089	else
4090	rm -rf $ARCHIVE/${frelout[$i]}
4091	cp -r ${frelout[$i]} $ARCHIVE
4092	fi
4093	file_saved=true
4094	elif [[ $archive_system = tivoli ]]
4095	then
4096	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4097	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4098	# GELEGT WERDEN
4099	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4100	chmod g+rx $tmp_data_catalog
4101	if [[ $files_for_pes = false ]]
4102	then
4103	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4104	else
4105	mkdir $tmp_data_catalog/${frelout[$i]}
4106	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4107	fi
4108
4109	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4110	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4111	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4112	if [[ $files_for_pes = false ]]
4113	then
4114	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4115	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4116	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4117	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4118	else
4119	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4120	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4121	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4122	fi
4123
4124	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4125	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4126	file_saved=true
4127
4128	elif [[ $archive_system = ut ]]
4129	then
4130	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4131	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4132	# GELEGT WERDEN
4133	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4134	chmod g+rx $tmp_data_catalog
4135	if [[ $files_for_pes = false ]]
4136	then
4137	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4138	else
4139	mkdir $tmp_data_catalog/${frelout[$i]}
4140	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4141	fi
4142
4143	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4144	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4145	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4146	if [[ $files_for_pes = false ]]
4147	then
4148	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4149	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4150	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4151	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4152	else
4153	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4154	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4155	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4156	fi
4157
4158	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4159	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4160	file_saved=true
4161
4162	else
4163	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4164	archive_save=false
4165	fi
4166	if [[ $file_saved = true ]]
4167	then
4168	if [[ $files_for_pes = false ]]
4169	then
4170	cat /dev/null > ${pathout[$i]}
4171	else
4172	mkdir -p ${pathout[$i]}
4173	fi
4174	fi
4175	fi
4176
4177	# APPEND AUF LOKALER MASCHINE
4178	if [[ "${actionout[$i]}" = "a" ]]
4179	then
4180	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4181	then
4182	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4183	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4184	else
4185	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4186	cat ${localout[$i]} >> ${pathout[$i]}
4187	fi
4188	fi
4189
4190	# KOPIEREN AUF LOKALER MASCHINE
4191	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4192	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4193	then
4194
4195	# KOPIEREN AUF EINPROZESSORMASCHINE
4196	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4197	then
4198	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4199	if [[ $link_local_output = true ]]
4200	then
4201	printf " using ln -f\n"
4202	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4203	fi
4204	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4205	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4206	then
4207	if [[ $link_local_output = true ]]
4208	then
4209	printf " ln failed, using cp...\n"
4210	fi
4211	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4212	fi
4213	else
4214	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4215	if [[ $link_local_output = true ]]
4216	then
4217	printf " using ln -f\n"
4218	ln -f ${localout[$i]} ${pathout[$i]}
4219	fi
4220	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4221	if [[ ! -f "${pathout[$i]}" ]]
4222	then
4223	if [[ $link_local_output = true ]]
4224	then
4225	printf " ln failed, using cp...\n"
4226	fi
4227	cp ${localout[$i]} ${pathout[$i]}
4228	fi
4229	fi
4230
4231	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4232	then
4233
4234	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4235	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4236	# WIRD DANN KOPIERT
4237	# PER MOVE UMBENANNT WERDEN
4238	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4239	if [[ $link_local_output = true ]]
4240	then
4241	printf " using ln -f\n"
4242	mkdir ${pathout[$i]}
4243	cd ${localout[$i]}
4244	for file in $(ls *)
4245	do
4246	ln -f $file ${pathout[$i]}
4247	done
4248	cd $TEMPDIR
4249	fi
4250	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4251	if [[ ! -f "${pathout[$i]}/_0000" ]]
4252	then
4253	if [[ $link_local_output = true ]]
4254	then
4255	printf " ln failed for .../_0000, using cp...\n"
4256	fi
4257	cp -r ${localout[$i]} ${pathout[$i]}
4258	fi
4259
4260	fi
4261	fi
4262	done
4263	if (( i != 0 ))
4264	then
4265	if [[ $transfer_problems = true ]]
4266	then
4267	printf "\n$striche\n *** OUTPUT-files saved"
4268	printf "\n +++ WARNING: some data transfers failed! \n"
4269	else
4270	printf "\n$striche\n *** all OUTPUT-files saved \n"
4271	fi
4272	fi
4273
4274
4275	# EVENTUELL FOLGEJOB STARTEN
4276	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4277	if [[ -f CONTINUE_RUN ]]
4278	then
4279
4280	if [[ $archive_save = true ]]
4281	then
4282
4283	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4284	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4285	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4286	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4287	# HANDEN
4288	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4289	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4290	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4291	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4292	then
4293	mc=`echo $mc \| sed 's/#/f/g'`
4294	fi
4295
4296
4297	# JOB STARTEN
4298	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4299	echo " $mc"
4300	printf "\n$striche\n"
4301	if [[ $localhost != $fromhost ]]
4302	then
4303
4304	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4305	then
4306	echo "*** ssh will be used to initiate restart-runs!"
4307	echo " return_addres=\"$return_addres\" "
4308	echo " return_username=\"$return_username\" "
4309	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4310	then
4311	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4312	else
4313	if [[ $localhost = ibmkisti ]]
4314	then
4315	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4316	else
4317	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4318	fi
4319	fi
4320	else
4321	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4322	locat=restart; exit
4323	fi
4324
4325	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4326	# DER AKTUELLE JOB ENDET
4327	if [[ $queue = special1q ]]
4328	then
4329	sleep 120
4330	else
4331	sleep 30
4332	fi
4333
4334	else
4335
4336	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4337	# RUFEN WERDEN, AUSSER AUF lcfimm
4338	cd $LOCAL_PWD
4339	if [[ $localhost = lcfimm ]]
4340	then
4341	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4342	else
4343	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4344	fi
4345	cd - > /dev/null
4346	fi
4347	printf "\n$striche\n *** restart-run initiated \n"
4348
4349
4350	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4351	# GEHOLT WORDEN SIND, LOESCHEN
4352	(( i = 0 ))
4353	while (( i < iin ))
4354	do
4355	(( i = i + 1 ))
4356	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4357	then
4358	rm -r $tmp_data_catalog/${frelin[$i]}
4359	fi
4360	done
4361
4362	else
4363
4364	printf "\n +++ no restart-run possible, since errors occured"
4365	printf "\n during the archive process"
4366	fi
4367
4368	fi
4369
4370
4371
4372	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4373	if [[ "$email_notification" != "none" ]]
4374	then
4375
4376	if [[ $localhost != $fromhost ]]
4377	then
4378	if [[ -f CONTINUE_RUN ]]
4379	then
4380	echo "PALM restart run necessary" > email_text
4381	echo "description header of actual run:" >> email_text
4382	cat CONTINUE_RUN >> email_text
4383	echo "mrun-command to restart:" >> email_text
4384	echo "$mc" >> email_text
4385	else
4386	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4387	fi
4388	mail $email_notification < email_text
4389	printf "\n *** email notification sent to \"$email_notification\" "
4390	fi
4391	fi
4392
4393
4394
4395	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4396	cd $HOME
4397	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4398
4399	else
4400
4401
4402	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4403	# CHENDE AKTIONEN DURCHGEFUEHRT
4404
4405	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4406	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4407	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4408	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4409	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4410	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4411	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4412	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4413	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4414	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4415	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4416	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4417	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4418	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4419	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4420	if [[ $use_openmp = true ]]
4421	then
4422	mrun_com=${mrun_com}" -O $threads_per_task"
4423	fi
4424	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4425	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4426	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4427	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4428	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4429	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4430	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4431	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4432	if [[ $do_remote = true ]]
4433	then
4434	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4435	fi
4436
4437
4438	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4439	jobfile=jobfile.$RANDOM
4440
4441
4442	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4443	echo "mkdir $TEMPDIR" >> $jobfile
4444	echo "cd $TEMPDIR" >> $jobfile
4445
4446
4447	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4448	if [[ $do_trace = true ]]
4449	then
4450	echo "set -x" >> $jobfile
4451	else
4452	echo "set +vx" >> $jobfile
4453	fi
4454
4455
4456	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4457	# DATEI FUER DEN JOB
4458	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4459	then
4460
4461	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4462	# KOPIEREN
4463	if [[ $restart_run != true ]]
4464	then
4465	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4466	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4467	fi
4468
4469	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4470	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4471	echo "set -x" >> $jobfile
4472	if [[ $host = $localhost ]]
4473	then
4474	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4475	else
4476	if [[ $host != ibmkisti ]]
4477	then
4478	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4479	else
4480	# on KISTI's IBM firewall is only opened on interactive node
4481	echo "localdir=\`pwd\`" >> $jobfile
4482	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4483	fi
4484	fi
4485	echo "export SOURCES_COMPLETE=true" >> $jobfile
4486
4487	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4488	# ARBEITSVERZEICHNIS VERSCHIEBEN
4489	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4490	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4491	echo "execute_mrun=true" >> $jobfile
4492	echo " " >> $jobfile
4493
4494	else
4495
4496	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4497	# SOWIE GEGEBENENFALLS DES MAKEFILES
4498	if [[ $do_compile = true ]]
4499	then
4500
4501	source_catalog=SOURCES_FOR_RUN_$fname
4502
4503	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4504	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4505	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4506	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4507	echo "export SOURCES_COMPLETE=true" >> $jobfile
4508	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4509
4510	for filename in $source_list
4511	do
4512	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4513	echo "cat > $filename << \"%END%\"" >> $jobfile
4514	cat $source_catalog/$filename >> $jobfile
4515	echo " " >> $jobfile
4516	echo "%END%" >> $jobfile
4517	echo " " >> $jobfile
4518	done
4519
4520	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4521	echo "cat > Makefile << \"%END%\"" >> $jobfile
4522	cat $source_catalog/Makefile >> $jobfile
4523	echo " " >> $jobfile
4524	echo "%END%" >> $jobfile
4525	echo " " >> $jobfile
4526
4527	echo "cd - > /dev/null" >> $jobfile
4528
4529	fi
4530
4531
4532	# ABSPEICHERN DER KONFIGURATIONSDATEI
4533	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4534	echo "cat > $config_file << \"%END%\"" >> $jobfile
4535	cat $config_file >> $jobfile
4536	echo "%END%" >> $jobfile
4537	echo " " >> $jobfile
4538
4539
4540	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4541	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4542	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4543	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4544	echo "%END%" >> $jobfile
4545	echo "chmod u+x $mrun_script_name" >> $jobfile
4546	echo "execute_mrun=true" >> $jobfile
4547	echo " " >> $jobfile
4548
4549	fi
4550
4551
4552	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4553	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4554	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4555	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4556	if [[ $do_remote = true ]]
4557	then
4558	(( i = 0 ))
4559	while (( i < iin ))
4560	do
4561	(( i = i + 1 ))
4562	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4563	if [[ "${transin[$i]}" = job ]]
4564	then
4565	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4566	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4567	echo " " >> $jobfile
4568	echo "%END%" >> $jobfile
4569	else
4570	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4571	fi
4572
4573	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4574	echo "if [[ \$? = 1 ]]" >> $jobfile
4575	echo "then" >> $jobfile
4576	echo " echo \" \" " >> $jobfile
4577	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4578	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4579	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4580	echo " execute_mrun=false" >> $jobfile
4581	echo "fi" >> $jobfile
4582	done
4583	fi
4584
4585	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4586	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4587	echo "LOCAL_PWD=$working_directory" >> $jobfile
4588	echo "export LOCAL_PWD" >> $jobfile
4589
4590	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4591	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4592	echo "export LOCAL_MRUN_PATH" >> $jobfile
4593
4594	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4595	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4596	then
4597	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4598	fi
4599
4600	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4601	echo "set -x" >> $jobfile
4602	echo "queue=$queue" >> $jobfile
4603	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4604
4605	echo 'ls -al; echo `pwd`' >> $jobfile
4606	echo "cd \$HOME" >> $jobfile
4607	echo "rm -rf $TEMPDIR" >> $jobfile
4608
4609
4610
4611
4612	# JOB PER SUBJOB STARTEN
4613	if [[ $silent = false ]]
4614	then
4615	printf "\n "
4616	else
4617	printf "\n\n"
4618	fi
4619
4620	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4621	rm -rf $jobfile
4622
4623
4624	fi # ENDE REMOTE-TEIL
4625
4626
4627
4628	# ENDE DER PROZEDUR

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