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source: palm/trunk/SCRIPTS/mrun @ 755

Last change on this file since 755 was 755, checked in by witha, 13 years ago
adapted for lcflow (ForWind? cluster in Oldenburg)
Property svn:keywords set to `Id Rev`
File size: 176.9 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 755 2011-08-29 09:55:16Z witha $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix (.nc)
228	# 18/08/11 - Marcus - support for Linux OS with German locale
229	# - properly report hosts on general Linux clusters
230	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
231
232
233	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
234
235	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
236	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
237	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
238
239	AddFilenames=""
240	additional_conditions=""
241	add_source_path=""
242	afname=""
243	archive_save=true
244	archive_system=none
245	compiler_name=""
246	cond1=""
247	cond2=""
248	config_file=.mrun.config
249	coupled_dist=""
250	coupled_mode="mpi1"
251	cpp_opts=""
252	cpp_options=""
253	cpumax=0
254	cpurest=0
255	delete_temporary_catalog=true
256	do_batch=false
257	do_compile=true
258	do_remote=false
259	do_stagein=true
260	do_stageout=true
261	do_trace=false
262	email_notification="none"
263	exclude=""
264	executable=""
265	execution_error=false
266	fimm=false
267	fname=test
268	fromhost=""
269	global_revision=""
270	group_number=none
271	host=""
272	host_file=""
273	hp=""
274	ignore_archive_error=false
275	input_list=""
276	interpreted_config_file=""
277	job_catalog="~/job_queue"
278	job_on_file=""
279	keep_data_from_previous_run=false
280	link_local_input=false
281	link_local_output=false
282	localhost_realname=$(hostname)
283	local_compile=false
284	local_dvrserver_running=.FALSE.
285	locat=normal
286	mainprog=""
287	makefile=""
288	mc=$0
289	while [[ $(echo $mc \| grep -c "/") != 0 ]]
290	do
291	mc=`echo $mc \| cut -f2- -d"/"`
292	done
293	module_calls=""
294	mrun_script_name=$mc
295	netcdf_inc=""
296	netcdf_lib=""
297	netcdf_support=false
298	node_usage=default
299	numprocs=""
300	numprocs_atmos=0
301	numprocs_ocean=0
302	OOPT=""
303	openmp=false
304	output_list=""
305	package_list=""
306	punkte="..........................................................."
307	queue=none
308	read_from_config=""
309	restart_run=false
310	if [[ `hostname` = rte10 ]]
311	then
312	return_addres=133.5.185.60
313	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
314	elif [[ `hostname` = climate0 ]]
315	then
316	return_addres=165.132.26.68
317	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
318	else
319	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
320	fi
321	return_password=""
322	return_username=$LOGNAME
323	remotecall=false
324	remote_username=""
325	run_coupled_model=false
326	run_mode=""
327	scirocco=false
328	store_on_archive_system=false
329	striche=" ----------------------------------------------------------------------------"
330	silent=false
331	source_list=""
332	source_path=SOURCE
333	tasks_per_node=""
334	threads_per_task=1
335	tmpcreate=false
336	tmp_data_catalog=""
337	transfer_problems=false
338	usern=$LOGNAME
339	use_openmp=false
340	working_directory=`pwd`
341	TOPT=""
342	XOPT=""
343	zeit=$( date \| cut -c 12-19 )
344
345	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
346	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
347
348	typeset -R30 calltime
349	typeset -L20 spalte1
350	typeset -L40 spalte2
351	typeset -L60 spalte3
352	typeset -L35 string1=`date`
353	typeset -L12 string2=$usern
354	typeset -L12 string3=$localhost_realname
355	typeset -L12 string4
356	typeset -L12 string5
357	typeset -L30 version="MRUN 2.0 Rev$Rev: 755 $"
358
359
360
361	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
362	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
363
364	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
365	# EXPORTIERT WERDEN
366	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
367	export group_number input_list memory numprocs output_list queue run_mode
368
369
370
371	# FEHLERBEHANDLUNG
372	# BEI EXIT:
373	trap 'rm -rf $working_directory/tmp_mrun
374	if [[ $locat != localhost ]]
375	then
376	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
377	# then
378	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
379	#MRUN-calls on $localhost
380	#
381	#date and time user localhost remotehost termination mrun-command
382	#--------------------------------------------------------------------------------------------------------------------
383	#%STATEND%
384	# chmod 666 ${mrun_path}/statistik/mrun_statistik
385	# fi
386	#
387	# # EINTRAG IN DIE STATISTIK-DATEI
388	# string4=$host
389	# string5=$locat
390	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
391	# then
392	# if [[ $do_batch = true ]]
393	# then
394	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
395	# else
396	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
397	# fi
398	# fi
399	echo " " > /dev/null
400	fi
401
402	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
403	then
404
405	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
406	(( i = 0 ))
407	while (( i < iec ))
408	do
409	(( i = i + 1 ))
410	printf "\n *** Execution of ERROR-command:\n"
411	printf " >>> ${err_command[$i]}\n"
412	eval ${err_command[$i]}
413	done
414	if [[ -n $interpreted_config_file ]] then
415	rm -rf $interpreted_config_file
416	fi
417	if [[ -n .mrun_environment ]] then
418	rm -rf .mrun_environment
419	fi
420	if [[ $tmpcreate = true ]]
421	then
422	printf "\n *** Contents of \"$TEMPDIR\":\n"
423	ls -al; cd
424	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
425	fi
426	if [[ "$dvrserver_id" != "" ]]
427	then
428	echo "+++ killing dvrserver_id=$dvrserver_id"
429	kill $dvrserver_id
430	fi
431	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
432	then
433	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
434	fi
435	printf "\n\n+++ MRUN killed \n\n"
436	elif [[ $locat != control_c ]]
437	then
438	printf "\n\n --> all actions finished\n\n"
439	printf " Bye, bye $usern !!\n\n"
440	fi' exit
441
442
443	# BEI TERMINAL-BREAK:
444	trap 'rm -rf $working_directory/tmp_mrun
445	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
446	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
447	then
448	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
449	fi
450	if [[ "$dvrserver_id" != "" ]]
451	then
452	echo "+++ killing dvrserver_id=$dvrserver_id"
453	kill $dvrserver_id
454	fi
455	printf "\n+++ MRUN killed by \"^C\" \n\n"
456	locat=control_c
457	exit
458	' 2
459
460
461	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
462	# BEEN SET
463	if [[ "$PALM_BIN" = "" ]]
464	then
465	printf "\n +++ environment variable PALM_BIN has not been set"
466	printf "\n please set it to the directory where the PALM scripts are located"
467	locat=palm_bin; exit
468	fi
469	export PATH=$PALM_BIN:$PATH
470
471
472
473	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
474	# FUER FOLGEJOBS BENOETIGT WIRD
475	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
476	do
477	case $option in
478	(a) afname=$OPTARG;;
479	(A) store_on_archive_system=true; mc="$mc -A";;
480	(b) do_batch=true; mc="$mc -b";;
481	(B) delete_temporary_catalog=false; mc="$mc -B";;
482	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
483	(C) restart_run=true; mc="$mc -C";;
484	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
485	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
486	(F) job_on_file="-D"; mc="$mc -F";;
487	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
488	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
489	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
490	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
491	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
492	(I) ignore_archive_error=true; mc="$mc -I";;
493	(k) keep_data_from_previous_run=true; mc="$mc -k";;
494	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
495	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
496	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
497	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
498	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
499	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
500	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
501	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
502	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
503	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
504	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
505	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
506	(S) read_from_config=false; mc="$mc -S";;
507	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
508	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
509	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
510	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
511	(v) silent=true; mc="$mc -v";;
512	(x) do_trace=true;set -x; mc="$mc -x";;
513	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
514	(y) ocean_file_appendix=true; mc="$mc -y";;
515	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
516	(\?) printf "\n +++ unknown option $OPTARG \n"
517	printf "\n --> type \"$0 ?\" for available options \n"
518	locat=parameter;exit;;
519	esac
520	done
521
522
523	# EVTL. POSITIONSPARAMETER EINLESEN
524	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
525	shift OPTIND-1
526
527
528	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
529	if [[ "$1" = "?" ]]
530	then
531	(printf "\n *** mrun can be called as follows:\n"
532	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
533	printf "\n Description of available options:\n"
534	printf "\n Option Description Default-Value"
535	printf "\n -a base name of input files equiv. -d"
536	printf "\n -A archiving when using file-attribute fl"
537	printf "\n -b batch-job on local machine ---"
538	printf "\n -B do not delete temporary directory at end ---"
539	printf "\n -c configuration file .mrun.config"
540	printf "\n -d base name of files attached to program test"
541	printf "\n -D preprocessor(cpp)-directives \"\" "
542	printf "\n -F create remote job file only ---"
543	printf "\n -h execution host $localhost_realname"
544	printf "\n -i INPUT control list \"\" "
545	printf "\n -I archiving errors of previous batch-jobs"
546	printf "\n will be ignored"
547	printf "\n -k keep data from previous run"
548	printf "\n -K additional conditions for controling"
549	printf "\n usage of conditional code and"
550	printf "\n env-variables in configuration file \"\" "
551	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
552	printf "\n -M Makefile name Makefile"
553	printf "\n -n node usage (shared/not_shared) depending on -h"
554	printf "\n -o OUTPUT control list \"\" "
555	printf "\n -O use OpenMP ---"
556	printf "\n -p software package list \"\" "
557	printf "\n -q queue \"$queue\" "
558	printf "\n -r run control list (combines -i -o) \"\" "
559	printf "\n -s filenames of routines to be compiled \"\" "
560	printf "\n must end with .f, .f90, .F, or .c !"
561	printf "\n use \"..\" for more than one file and wildcards"
562	printf "\n -s TEST compiles all files with w-permit"
563	printf "\n -S config file interpreted by shellscript ---"
564	printf "\n -t allowed cpu-time in seconds (batch) 0"
565	printf "\n -T tasks per node depending on -h"
566	printf "\n -u username on remote machine \"\" "
567	printf "\n -v no prompt for confirmation ---"
568	printf "\n -x tracing of mrun for debug purposes ---"
569	printf "\n -X # of processors (on parallel machines) 1"
570	printf "\n -y add appendix \"_O\" to all local output"
571	printf "\n files (ocean precursor runs followed by"
572	printf "\n coupled atmosphere-ocean runs) ---"
573	printf "\n -Y run coupled model, \"#1 #2\" with"
574	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
575	printf "\n "
576	printf "\n Possible values of positional parameter <modus>:"
577	printf "\n \"?\" - this outline \n\n") \| more
578	exit
579	elif [[ "$1" != "" ]]
580	then
581	printf "\n +++ positional parameter $1 unknown \n"
582	locat=parameter; exit
583	fi
584
585
586
587	# KURZE STARTMELDUNG
588	printf "\n*** $version "
589	printf "\n will be executed. Please wait ..."
590
591
592
593	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
594	if [[ ! -f $config_file ]]
595	then
596	printf "\n\n +++ configuration file: "
597	printf "\n $config_file"
598	printf "\n does not exist"
599	locat=connect; exit
600	fi
601
602
603	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
604	line=""
605	grep "%host_identifier" $config_file > tmp_mrun
606	while read line
607	do
608	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
609	then
610	HOSTNAME=`echo $line \| cut -d" " -s -f2`
611	host_identifier=`echo $line \| cut -d" " -s -f3`
612	if [[ $localhost_realname = $HOSTNAME ]]
613	then
614	localhost=$host_identifier
615	break
616	fi
617	fi
618	done < tmp_mrun
619
620	if [[ "$localhost" = "" ]]
621	then
622	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
623	printf "\n for local host \"$localhost_realname\"."
624	printf "\n Please add line"
625	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
626	printf "\n to the configuration file."
627	locat=localhost; exit
628	fi
629
630
631	# HOSTSPEZIFISCHE VARIABLEN SETZEN
632	case $localhost_realname in
633	(r1\|r2\|h01\|b01) archive_system=tivoli;;
634	(cs*) archive_system=ut;;
635	(fimm.bccs.uib.no) fimm=true;;
636	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
637	(scirocco) scirocco=true;;
638	esac
639
640
641
642	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
643	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
644	[[ "$afname" = "" ]] && afname=$fname
645
646
647	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
648	if [[ "$run_mode" != "" ]]
649	then
650	input_list="$input_list $run_mode"
651	output_list="$output_list $run_mode"
652	fi
653
654
655	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
656	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
657	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
658	# STARTET)
659	if [[ "$fromhost" = "" ]]
660	then
661	fromhost=$localhost
662	fi
663
664
665	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
666	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
667	then
668	source_list=TEST
669	local_compile=true
670	host=$localhost
671	fi
672
673
674	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
675	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
676	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
677	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
678	if [[ -n $host && "$host" != $localhost ]]
679	then
680	do_batch=true
681	do_remote=true
682	case $host in
683	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
684	(*) printf "\n"
685	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
686	printf "\n is not available"
687	locat=nqs; (( iec = 0 )); exit;;
688	esac
689	else
690	host=$localhost
691	fi
692
693
694	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
695	if [[ -n $additional_conditions ]]
696	then
697	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
698	cond1=`echo $additional_conditions \| cut -d" " -f1`
699	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
700	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
701	if [[ -n $dummy ]]
702	then
703	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
704	locat=options; exit
705	fi
706	block=_$cond1
707	[[ -n $cond2 ]] && block=${block}_$cond2
708	fi
709
710
711	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
712	if [[ $run_coupled_model = true ]]
713	then
714
715	if [[ -n $coupled_dist ]]
716	then
717
718	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
719	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
720
721	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
722	then
723
724	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
725	printf "\n PEs (total) : $numprocs"
726	printf "\n PEs (atmosphere): $numprocs_atmos"
727	printf "\n PEs (ocean) : $numprocs_ocean"
728	locat=coupling; exit
729
730	fi
731
732	else
733
734	(( numprocs_ocean = $numprocs / 2 ))
735	(( numprocs_atmos = $numprocs / 2 ))
736
737	fi
738	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
739
740	# GET coupled_mode FROM THE CONFIG FILE
741	line=""
742	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
743	while read line
744	do
745	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
746	then
747	coupled_mode="mpi2"
748	fi
749	done < tmp_mrun
750
751	fi
752
753
754	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
755	# ARCHIVIERUNG FEHLGESCHLAGEN IST
756	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
757	then
758	if [[ $ignore_archive_error = false ]]
759	then
760	printf "\n +++ data archiving of previous run failed"
761	printf "\n see directory \~/job_queue on remote machine"
762	locat=archive; exit
763	else
764	printf "\n +++ warning: data archiving in a previous run failed"
765	printf "\n MRUN continues, trying to get backup copy"
766	fi
767	fi
768
769
770
771	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
772	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
773	if [[ "$read_from_config" = false ]]
774	then
775
776	[[ $silent = false ]] && printf "\n Reading the configuration file... "
777	while read zeile
778	do
779	[[ $silent = false ]] && printf "."
780
781
782	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
783	# ERSETZEN
784	eval zeile=\"$zeile\"
785
786
787	# INTERPRETATION DER ZEILE
788	if [[ "$(echo $zeile)" = "" ]]
789	then
790	# LEERZEILE, KEINE AKTION
791	continue
792
793	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
794	then
795
796	# ZEILE IST KOMMENTARZEILE
797	true
798
799	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
800	then
801
802	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
803	zeile=$(echo $zeile \| cut -c2-)
804	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
805	var=`echo $zeile \| cut -d" " -f1`
806	value=`echo $zeile \| cut -d" " -s -f2`
807	for_host=`echo $zeile \| cut -d" " -s -f3`
808	for_cond1=`echo $zeile \| cut -d" " -s -f4`
809	for_cond2=`echo $zeile \| cut -d" " -s -f5`
810
811	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
812	then
813
814	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
815	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
816	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
817
818
819	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
820	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
821	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
822	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
823	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
824	# KONFIGURATIONSDATEI
825	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
826	then
827	eval $var=\$value
828
829	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
830	if [[ $do_trace = true ]]
831	then
832	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
833	fi
834	fi
835
836	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
837	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
838	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
839	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
840	if [[ $var = host ]]
841	then
842	if [[ -n $host && "$host" != $localhost ]]
843	then
844	do_batch=true
845	do_remote=true
846	case $host in
847	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
848	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
849	printf "\n is not available"
850	locat=nqs; exit;;
851	esac
852	else
853	host=$localhost
854	fi
855	fi
856
857	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
858	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
859	# DEN PROGRAMMEN BENOETIGT WERDEN
860	export $var
861	fi
862
863
864
865
866	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
867	then
868
869	# ZEILE DEFINIERT ERROR-KOMMANDO
870	(( iec = iec + 1 ))
871	zeile=$(echo $zeile \| cut -c4-)
872	err_command[$iec]="$zeile"
873
874	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
875	then
876
877	# ZEILE DEFINIERT INPUT-KOMMANDO
878	(( iic = iic + 1 ))
879	zeile=$(echo $zeile \| cut -c4-)
880	in_command[$iic]="$zeile"
881
882	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
883	then
884
885	# ZEILE DEFINIERT OUTPUT-KOMMANDO
886	(( ioc = ioc + 1 ))
887	zeile=$(echo $zeile \| cut -c4-)
888	out_command[$ioc]="$zeile"
889
890	else
891
892	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
893	# s2a: in/out - Feld
894	# s2b: loc - Feld (optional)
895	# s2c: tr/ar - Feld (optional)
896	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
897	s1=`echo $zeile \| cut -d" " -f1`
898	s2=`echo $zeile \| cut -d" " -s -f2`
899	s2a=$(echo $s2 \| cut -d":" -f1)
900	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
901	then
902	s2b=""
903	s2c=""
904	else
905	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
906	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
907	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
908	fi
909	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
910	s3=`echo $zeile \| cut -d" " -f3`
911	s4=`echo $zeile \| cut -d" " -s -f4`
912	s5=`echo $zeile \| cut -d" " -s -f5`
913	s6=`echo $zeile \| cut -d" " -s -f6`
914
915
916	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
917	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
918	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
919	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
920	# HANDEN SEIN MUSS (D.H. s2b = loc)
921	IFSALT="$IFS"; IFS="$IFS:"
922	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
923	then
924	found=false
925	for actual in $input_list
926	do
927	for formal in $s3
928	do
929	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
930	done
931	done
932	if [[ $found = true ]]
933	then
934	(( iin = iin + 1 ))
935	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
936	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
937	extin[$iin]=$s6
938	fi
939	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
940	then
941	found=false
942	for actual in $output_list
943	do
944	for formal in $s3
945	do
946	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
947	done
948	done
949	if [[ $found = true ]]
950	then
951	(( iout = iout + 1 ))
952	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
953	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
954	fi
955	elif [[ "$s2a" != in && "$s2a" != out ]]
956	then
957	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
958	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
959	locat=connect; exit
960	fi
961	IFS="$IFSALT"
962	fi
963	done < $config_file
964
965	else
966
967
968	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
969	[[ $silent = false ]] && printf "..."
970	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
971	export interpreted_config_file=.icf.$RANDOM
972
973
974
975	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
976	# VERFUEGUNG STELLEN
977	cat > .mrun_environment << %%END%%
978	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
979	config_file = '$config_file', do_remote = '$do_remote',
980	do_trace = '$do_trace', host = '$host',
981	input_list = '$input_list', icf = '$interpreted_config_file',
982	localhost = '$localhost', output_list = '$output_list' /
983
984	%%END%%
985
986	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
987	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
988	mrun_memory=$memory
989	mrun_group_number=$group_number
990	mrun_cpumax=$cpumax
991	mrun_numprocs=$numprocs
992
993	if [[ $localhost_realname = "sx-fep" ]]
994	then
995	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
996	else
997
998	if [[ "$host" != $localhost ]]
999	then
1000
1001	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1002	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1003	if [[ $? != 0 ]]
1004	then
1005	printf "\n\n +++ no interpret_config found"
1006	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1007	locat=interpret_config; exit
1008	fi
1009	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1010	$interpret_config_executable
1011
1012	else
1013
1014	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1015	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1016	then
1017	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1018	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1019	locat=interpret_config; exit
1020	else
1021	interpret_config${block}.x
1022	fi
1023
1024	fi
1025	fi
1026	rm .mrun_environment
1027
1028
1029	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1030	chmod u+x $interpreted_config_file
1031	export PATH=$PATH:.
1032	. $interpreted_config_file
1033	rm $interpreted_config_file
1034
1035
1036	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1037	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1038	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1039	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1040	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1041
1042	fi
1043
1044
1045	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1046	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1047	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1048	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1049	if [[ "$SOURCES_COMPLETE" = "" ]]
1050	then
1051
1052	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1053	# VEREINBART WURDE
1054	source_path=""
1055	line=""
1056	grep "%source_path" $config_file > tmp_mrun
1057	while read line
1058	do
1059	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1060	then
1061	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1062	then
1063	global_source_path=`echo $line \| cut -d" " -f2`
1064	fi
1065	fi
1066	done < tmp_mrun
1067
1068	line=""
1069	found=false
1070	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1071	while read line
1072	do
1073	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1074	then
1075	if [[ $found = true ]]
1076	then
1077	printf "\n\n +++ more than one source path found in configuration file"
1078	printf "\n for local host \"$localhost\" "
1079	locat=source_path; exit
1080	fi
1081	source_path=`echo $line \| cut -d" " -f2`
1082	found=true
1083	fi
1084	done < tmp_mrun
1085	rm tmp_mrun
1086
1087	if [[ "$source_path" = "" ]]
1088	then
1089	if [[ "$global_source_path" != "" ]]
1090	then
1091	source_path=$global_source_path
1092	else
1093	printf "\n\n +++ no source path found in configuration file"
1094	printf "\n for local host \"$localhost\" "
1095	locat=source_path; exit
1096	fi
1097	fi
1098	eval source_path=$source_path
1099
1100	if [[ ! -d $source_path ]]
1101	then
1102	printf "\n\n +++ source path \"$source_path\" on local host"
1103	printf "\n \"$localhost\" does not exist"
1104	locat=source_path; exit
1105	fi
1106
1107	fi
1108
1109
1110	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1111	# DURCH OPTION -G MITGETEILT)
1112	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1113	then
1114	global_revision=`svnversion $source_path 2>/dev/null`
1115	global_revision="Rev: $global_revision"
1116	fi
1117
1118
1119	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1120	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1121	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1122	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1123	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1124	if [[ -n $host && "$host" != $localhost ]]
1125	then
1126	do_batch=true
1127	do_remote=true
1128	case $host in
1129	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1130	(*) printf "\n"
1131	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1132	printf "\n is not available"
1133	locat=nqs; (( iec = 0 )); exit;;
1134	esac
1135	else
1136	host=$localhost
1137	fi
1138
1139
1140	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1141	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1142	then
1143
1144	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1145	if [[ ! -n $numprocs ]]
1146	then
1147	printf "\n"
1148	printf "\n +++ option \"-K parallel\" requires additional specification"
1149	printf "\n of the number of processors to be used by"
1150	printf "\n mrun-option \"-X\" or by environment-variable"
1151	printf "\n \"numprocs\" in the configuration file"
1152	locat=numprocs; (( iec = 0 )); exit
1153	fi
1154
1155	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1156	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1157	# GESAMTPROZESSORANZAHL IST
1158	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmkisti \|\| $host = ibms ]]
1159	then
1160	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1161	(( ival = $tasks_per_node ))
1162	(( pes = numprocs ))
1163	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1164	# then
1165	# (( pes = pes - 1 ))
1166	# fi
1167	(( ii = pes / ival ))
1168	if (( pes - ii * ival > 0 ))
1169	then
1170	printf "\n"
1171	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1172	printf "\n divisor of the total number of processors (option \"-X\")"
1173	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1174	locat=tasks_per_node; (( iec = 0 )); exit
1175	fi
1176	fi
1177
1178	# IBMY HAT NUR EINEN KNOTEN
1179	if [[ $host = ibmy ]]
1180	then
1181	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1182	then
1183	printf "\n"
1184	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1185	printf "\n total number of processors (option \"-X\")"
1186	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1187	locat=tasks_per_node; (( iec = 0 )); exit
1188	fi
1189	fi
1190
1191	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1192	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1193	# if [[ $use_openmp = true ]]
1194	# then
1195	# threads_per_task=$tasks_per_node
1196	# tasks_per_node=1
1197	# fi
1198
1199	# SETTINGS FOR SUBJOB-COMMAND
1200	TOPT="-T $tasks_per_node"
1201	OOPT="-O $threads_per_task"
1202
1203	# GESAMTZAHL DER KNOTEN BESTIMMEN
1204	if [[ "$tasks_per_node" != "" ]]
1205	then
1206	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1207	fi
1208
1209	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1210	# SETZEN
1211	if [[ $node_usage = default ]]
1212	then
1213	if [[ $host = ibms ]]
1214	then
1215	node_usage=shared
1216	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1217	then
1218	node_usage=singlejob
1219	else
1220	node_usage=not_shared
1221	fi
1222	fi
1223
1224	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1225	then
1226	printf "\n"
1227	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1228	printf "\n \"shared\" or \"not_shared\""
1229	locat=tasks_per_node; (( iec = 0 )); exit
1230	fi
1231
1232	fi
1233
1234	# PRUEFEN, OB HOSTFILE EXISTIERT
1235	if [[ -n $hostfile ]]
1236	then
1237	if [[ ! -f $hostfile ]]
1238	then
1239	printf "\n"
1240	printf "\n +++ hostfile \"$hostfile\" does not exist"
1241	locat=hostfile; exit
1242	fi
1243	fi
1244
1245	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1246	if [[ $host = ibmy && $do_remote = false ]]
1247	then
1248	if [[ ! -f $HOME/.rhosts ]]
1249	then
1250	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1251	printf "\n\n *** file:"
1252	printf "\n $HOME/.rhosts"
1253	printf "\n was created\n"
1254	fi
1255	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1256	then
1257	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1258	printf "\n\n *** file:"
1259	printf "\n $HOME/.rhosts"
1260	printf "\n was extended by the name of the current host\n"
1261	fi
1262	fi
1263
1264
1265
1266	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1267	if [[ $queue = none ]]
1268	then
1269	case $host in
1270	(ibmh) queue=no_class;;
1271	(ibmkisti) queue=class.32plus;;
1272	(ibmy) queue=parallel;;
1273	(lckyoto) queue=ph;;
1274	(lcsgib) queue=bigq;;
1275	(lcsgih) queue=bigq;;
1276	(lctit) queue=S;;
1277	(nech) queue=none;;
1278	(necriam) queue=SP;;
1279	(unics) queue=unics;;
1280	esac
1281	fi
1282
1283
1284	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1285	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1286	# ERMITTELN
1287	(( i = 0 ))
1288	while (( i < iin ))
1289	do
1290	(( i = i + 1 ))
1291	(( maxcycle = 0 ))
1292
1293	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1294	if [[ "${actionin[$i]}" = di ]]
1295	then
1296	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1297	# REM-MASCHINE AUSWERTEN
1298	eval filename=${pathin[$i]}/${endin[$i]}
1299	else
1300	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1301	# REM-MASCHINE AUSWERTEN
1302	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1303	fi
1304
1305	# PRUEFEN AUF VORHANDENSEIN
1306	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1307	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1308	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1309	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1310	then
1311	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1312	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1313	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1314	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1315	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1316	if [[ "${transin[$i]}" != "locopt" ]]
1317	then
1318	printf "\n\n +++ INPUT-file: "
1319	if [[ "${extin[$i]}" = "" ]]
1320	then
1321	printf "\n $filename"
1322	else
1323	printf "\n $filename.${extin[$i]}"
1324	fi
1325	printf "\n does not exist\n"
1326	locat=input; exit
1327	else
1328	transin[$i]="unavailable"
1329	fi
1330	else
1331
1332	# ZYKLUSNUMMER FESTSTELLEN
1333	ls -1 -d $filename > filelist 2>/dev/null
1334	ls -1 -d $filename.* >> filelist 2>/dev/null
1335	while read zeile
1336	do
1337	cycle=$(print $zeile \| cut -f2 -d".")
1338	if [[ "$cycle" = "$zeile" ]]
1339	then
1340	(( icycle = 0 ))
1341	elif [[ "$cycle" = "${extin[$i]}" ]]
1342	then
1343	(( icycle = 0 ))
1344	else
1345	(( icycle = $cycle ))
1346	fi
1347	if (( icycle > maxcycle ))
1348	then
1349	(( maxcycle = icycle ))
1350	file_to_be_used=$zeile
1351	fi
1352	done <filelist
1353	rm filelist
1354
1355	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1356	if (( maxcycle > 0 ))
1357	then
1358	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1359	then
1360	filename=${filename}.$maxcycle.${extin[$i]}
1361	else
1362	filename=${filename}.$maxcycle
1363	fi
1364	else
1365	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1366	then
1367	filename=${filename}.${extin[$i]}
1368	fi
1369	fi
1370
1371	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1372	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1373	absnamein[$i]=$filename
1374	if (( maxcycle > 0 ))
1375	then
1376	if [[ "${actionin[$i]}" = di ]]
1377	then
1378	frelin[$i]=${endin[$i]}.$maxcycle
1379	else
1380	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1381	fi
1382	else
1383	if [[ "${actionin[$i]}" = di ]]
1384	then
1385	frelin[$i]=${endin[$i]}
1386	else
1387	frelin[$i]=${afname}${endin[$i]}
1388	fi
1389	fi
1390
1391	fi
1392	done
1393
1394
1395	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1396	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1397	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1398	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1399	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1400	(( i = 0 ))
1401	while (( i < iout ))
1402	do
1403	(( i = i + 1 ))
1404	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1405	then
1406	if [[ "${actionout[$i]}" = tr ]]
1407	then
1408	actionout[$i]=""
1409	elif [[ "${actionout[$i]}" = trpe ]]
1410	then
1411	actionout[$i]=pe
1412	elif [[ "${actionout[$i]}" = tra ]]
1413	then
1414	actionout[$i]=a
1415	fi
1416	(( maxcycle = 0 ))
1417	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1418	eval catalogname=${pathout[$i]}
1419	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1420	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1421	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1422	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1423	then
1424
1425	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1426	if cat /dev/null > $filename
1427	then
1428	rm $filename
1429	else
1430
1431	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1432	if [[ ! -d $catalogname ]]
1433	then
1434	if mkdir -p $catalogname
1435	then
1436	printf "\n\n *** directory:"
1437	printf "\n $catalogname"
1438	printf "\n was created\n"
1439	else
1440	printf "\n\n +++ OUTPUT-file:"
1441	printf "\n $filename"
1442	printf "\n cannot be created, because directory does not exist"
1443	printf "\n and cannot be created either"
1444	printf "\n"
1445	locat=output ; exit
1446	fi 2>/dev/null
1447	else
1448	printf "\n\n +++ OUTPUT-file:"
1449	printf "\n $filename"
1450	printf "\n cannot be created, although directory exists"
1451	printf "\n"
1452	locat=output ; exit
1453	fi
1454	fi 2>/dev/null
1455	else
1456
1457	# ZYKLUSNUMMER FESTSTELLEN
1458	ls -1 -d $filename > filelist 2>/dev/null
1459	ls -1 -d $filename.* >> filelist 2>/dev/null
1460	while read zeile
1461	do
1462	cycle=$(print $zeile \| cut -f2 -d".")
1463	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1464	then
1465	(( icycle = 1 ))
1466	else
1467	(( icycle = $cycle + 1 ))
1468	fi
1469	if (( icycle > maxcycle ))
1470	then
1471	(( maxcycle = icycle ))
1472	fi
1473	done <filelist
1474	rm filelist
1475	fi
1476
1477	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1478	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1479	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1480	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1481	if [[ "${actionout[$i]}" != a ]]
1482	then
1483	if (( maxcycle > 0 ))
1484	then
1485	filename=${filename}.$maxcycle
1486	if cat /dev/null > $filename
1487	then
1488	rm $filename
1489	else
1490	printf "\n +++ OUTPUT-file:"
1491	printf "\n $filename"
1492	printf "\n cannot be created"
1493	locat=output ; exit
1494	fi
1495	fi
1496	else
1497	(( maxcycle = maxcycle - 1 ))
1498	if (( maxcycle > 0 ))
1499	then
1500	filename=${filename}.$maxcycle
1501	fi
1502	fi
1503
1504	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1505	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1506	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1507	pathout[$i]=$filename
1508	if (( maxcycle > 0 ))
1509	then
1510	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1511	else
1512	frelout[$i]=${fname}${endout[$i]}
1513	fi
1514
1515	fi
1516	done
1517
1518
1519	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1520	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1521	then
1522	if [[ "$dvr_inc" = "" ]]
1523	then
1524	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1525	printf "\n This is required for the dvrp_graphics package.\n"
1526	locat=dvr; exit
1527	fi
1528	if [[ "$dvr_lib" = "" ]]
1529	then
1530	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1531	printf "\n This is required for the dvrp_graphics package.\n"
1532	locat=dvr; exit
1533	fi
1534	fi
1535
1536
1537	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1538	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1539	# UEBERSETZT ZU WERDEN)
1540	if [[ "$mainprog" = "" && "$executable" = "" ]]
1541	then
1542	printf "\n +++ neither main program nor executable defined"
1543	locat=source; exit
1544	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1545	then
1546	printf "\n +++ main program as well as executable defined"
1547	locat=source; exit
1548	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1549	then
1550	do_compile=false
1551	fi
1552
1553
1554	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1555	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1556	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1557	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1558	then
1559	rm -rf SOURCES_FOR_RUN_$fname
1560	mkdir SOURCES_FOR_RUN_$fname
1561	fi
1562
1563
1564	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1565	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1566	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1567	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1568	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1569	then
1570
1571	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1572	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1573
1574
1575	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1576	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1577	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1578	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1579	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1580	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1581	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1582	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1583	# GESAMMELT
1584	if [[ "$source_list" = WRITE_PERMIT ]]
1585	then
1586
1587	source_list=""
1588	cd $source_path
1589
1590
1591	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1592	Names=$(ls -1 *.f90 2>&1)
1593	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1594	Names=$(ls -1 *.F90 2>&1)
1595	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1596	Names=$(ls -1 *.F 2>&1)
1597	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1598	Names=$(ls -1 *.f 2>&1)
1599	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1600	Names=$(ls -1 *.c 2>&1)
1601	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1602
1603
1604	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1605	for dateiname in $Filenames
1606	do
1607	if [[ -w $dateiname ]]
1608	then
1609	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1610	then
1611	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1612	source_list=$source_list"$dateiname "
1613	fi
1614	fi
1615	done
1616
1617	cd - > /dev/null
1618
1619
1620	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1621	then
1622
1623	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1624	source_list=""
1625	cd $source_path
1626
1627
1628	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1629	if [[ ! -d .svn ]]
1630	then
1631	printf "\n\n +++ source directory"
1632	printf "\n \"$source_path\" "
1633	printf "\n is not under control of \"subversion\"."
1634	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1635	fi
1636
1637
1638	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1639	Filenames=""
1640	svn status > tmp_mrun
1641	while read line
1642	do
1643	firstc=`echo $line \| cut -c1`
1644	if [[ $firstc = M \|\| $firstc = "?" ]]
1645	then
1646	Name=`echo "$line" \| cut -c8-`
1647	extension=`echo $Name \| cut -d. -f2`
1648	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1649	then
1650	Filenames="$Filenames "$Name
1651	fi
1652	fi
1653	done < tmp_mrun
1654
1655
1656	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1657	for dateiname in $Filenames
1658	do
1659	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1660	source_list=$source_list"$dateiname "
1661	done
1662
1663	cd - > /dev/null
1664
1665
1666	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1667	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1668	# VORHANDEN
1669	elif [[ "$source_list" != "" && $restart_run != true ]]
1670	then
1671
1672	cd $source_path
1673
1674	for filename in $source_list
1675	do
1676
1677	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1678	if [[ $(print $filename \| grep -c "/") != 0 ]]
1679	then
1680	printf "\n +++ source code file: $filename"
1681	printf "\n must not contain (\"/\") "
1682	locat=source; exit
1683	fi
1684
1685	if [[ ! -f $filename ]]
1686	then
1687	printf "\n +++ source code file: $filename"
1688	printf "\n does not exist"
1689	locat=source; exit
1690	else
1691	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1692	fi
1693
1694	done
1695
1696	cd - > /dev/null
1697
1698	fi
1699
1700
1701	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1702	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1703	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1704	if [[ $restart_run != true ]]
1705	then
1706
1707	if [[ ! -f "$source_path/$mainprog" ]]
1708	then
1709	printf "\n\n +++ main program: $mainprog"
1710	printf "\n does not exist in source directory"
1711	printf "\n \"$source_path\"\n"
1712	locat=source; exit
1713	else
1714	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1715	then
1716	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1717	source_list=${mainprog}" $source_list"
1718	fi
1719	fi
1720	fi
1721
1722
1723	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1724	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1725	if [[ "$restart_run" != true ]]
1726	then
1727	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1728	if [[ ! -f $makefile ]]
1729	then
1730	printf "\n +++ file \"$makefile\" does not exist"
1731	locat=make; exit
1732	else
1733	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1734	fi
1735	fi
1736
1737
1738	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1739	if [[ $restart_run != true && "$add_source_path" != "" ]]
1740	then
1741
1742	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1743	if [[ ! -d $add_source_path ]]
1744	then
1745	printf "\n\n +++ WARNING: additional source code directory"
1746	printf "\n \"$add_source_path\" "
1747	printf "\n does not exist or is not a directory."
1748	printf "\n No source code will be used from this directory!\n"
1749	add_source_path=""
1750	sleep 3
1751	else
1752
1753	cd $add_source_path
1754	found=false
1755
1756	Names=$(ls -1 *.f90 2>&1)
1757	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1758	Names=$(ls -1 *.F90 2>&1)
1759	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1760	Names=$(ls -1 *.F 2>&1)
1761	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1762	Names=$(ls -1 *.f 2>&1)
1763	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1764	Names=$(ls -1 *.c 2>&1)
1765	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1766
1767	cd - > /dev/null
1768	cd SOURCES_FOR_RUN_$fname
1769
1770	# COPY MAKEFILE IF EXISTING
1771	if [[ -f $add_source_path/Makefile ]]
1772	then
1773	printf "\n\n *** user Makefile from directory"
1774	printf "\n \"$add_source_path\" is used \n"
1775	sleep 1
1776	cp $add_source_path/Makefile .
1777	fi
1778
1779	for dateiname in $AddFilenames
1780	do
1781	if [[ -f $dateiname ]]
1782	then
1783	printf "\n +++ source code file \"$dateiname\" found in additional"
1784	printf "\n source code directory \"$add_source_path\" "
1785	printf "\n but was also given with option \"-s\" which means that it should be taken"
1786	printf "\n from directory \"$source_path\"."
1787	locat=source; exit
1788	fi
1789
1790	cp $add_source_path/$dateiname .
1791	source_list="$source_list $dateiname"
1792
1793	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1794	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1795	then
1796	printf "\n\n +++ user file \"$dateiname\" "
1797	printf "\n is not listed in Makefile \n"
1798	locat=source; exit
1799	else
1800
1801	# Default User-Interface von der Liste entfernen, falls Datei
1802	# ein User-Interface enthaelt
1803	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1804	# then
1805	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1806	# then
1807	# rm -rf user_interface.f90
1808	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1809	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1810	# printf "\n since a user-interface is found in file"
1811	# printf "\n \"$add_source_path/$dateiname\" \n"
1812	# sleep 3
1813	# else
1814	if [[ $found = false ]]
1815	then
1816	found=true
1817	printf "\n\n *** following user file(s) added to the"
1818	printf " files to be translated:\n "
1819	fi
1820	printf "$dateiname "
1821	sleep 0.5
1822	fi
1823	done
1824	[[ $found = true ]] && printf "\n"
1825	cd - > /dev/null
1826	fi
1827	fi
1828
1829
1830	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1831	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1832	if [[ $restart_run != true && -n $package_list ]]
1833	then
1834
1835	cd $source_path
1836
1837	for package in $package_list
1838	do
1839
1840	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1841
1842	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1843	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1844	# LIEFERT
1845	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1846
1847
1848	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1849	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1850	for source_list_name in $package_source_list
1851	do
1852	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1853	then
1854
1855	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1856	ending=`echo $source_list_name \| cut -f2 -d.`
1857	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1858	then
1859	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1860	source_list="$source_list $source_list_name"
1861	fi
1862	fi
1863	done
1864	done
1865
1866	cd - > /dev/null
1867	fi
1868
1869
1870	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1871	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1872	# if [[ "$restart_run" != true ]]
1873	# then
1874	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1875	# if [[ ! -f $makefile ]]
1876	# then
1877	# printf "\n +++ file \"$makefile\" does not exist"
1878	# locat=make; exit
1879	# else
1880	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1881	# fi
1882	# fi
1883
1884	fi # do_compile=true
1885
1886
1887	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1888	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1889	if [[ $do_compile = true ]]
1890	then
1891
1892	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1893	# ZUSAMMENSETZEN
1894	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1895	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1896	then
1897	cpp_options="${cpp_options},-D__ibm=__ibm"
1898	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1899	then
1900	cpp_options="$cpp_options -D__nec"
1901	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1902	then
1903	cpp_options="$cpp_options -D__lc"
1904	else
1905	cpp_options="$cpp_options -D__$localhost"
1906	fi
1907
1908	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1909	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1910	then
1911	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1912	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1913	else
1914	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1915	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1916	fi
1917
1918	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1919	if [[ -n $package_list ]]
1920	then
1921	for package in $package_list
1922	do
1923	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1924	then
1925	if [[ $package != "dvrp_graphics+1PE" ]]
1926	then
1927	cpp_options="${cpp_options},-D__$package=__$package"
1928	else
1929	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1930	export use_seperate_pe_for_dvrp_output=true
1931	fi
1932	else
1933	if [[ $package != "dvrp_graphics+1PE" ]]
1934	then
1935	cpp_options="$cpp_options -D__$package"
1936	else
1937	cpp_options="$cpp_options -D__dvrp_graphics"
1938	export use_seperate_pe_for_dvrp_output=true
1939	fi
1940	fi
1941	done
1942	fi
1943
1944	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1945	if [[ -n $cpp_opts ]]
1946	then
1947	for popts in $cpp_opts
1948	do
1949	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1950	then
1951	cpp_options="${cpp_options},-D__$popts=__$popts"
1952	else
1953	cpp_options="$cpp_options -D__$popts"
1954	fi
1955	done
1956	fi
1957
1958	else
1959
1960
1961	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1962	if [[ $do_remote = false ]]
1963	then
1964	if [[ ! -f $executable ]]
1965	then
1966	printf "\n +++ executable file: $executable"
1967	printf "\n does not exist"
1968	locat=executable; exit
1969	fi
1970	fi
1971	fi
1972
1973
1974	# JOBMODUS FESTSTELLEN
1975	if [[ "$ENVIRONMENT" = BATCH ]]
1976	then
1977	jobmo=BATCH
1978	else
1979	jobmo=INTERACTIVE
1980	fi
1981
1982
1983	# no interactive runs on lctit
1984	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1985	then
1986	printf "\n +++ no interactive runs allowed on host \"$host\" "
1987	printf "\n please submit batch job using mrun option \"-b\" \n"
1988	locat=normal; exit
1989	fi
1990
1991
1992	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1993	# DURCH BENUTZER ANDERWEITIG VEREINBART
1994	if [[ "$compiler_name" = "" ]]
1995	then
1996
1997	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1998	locat=compiler_name; exit
1999
2000	fi
2001
2002
2003	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2004	[[ $localhost = necriam ]] && compiler_name=mpif90
2005
2006
2007
2008	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2009	kennung=$RANDOM
2010	if [[ "$tmp_user_catalog" = "" ]]
2011	then
2012	if [[ $localhost = ibmh ]]
2013	then
2014	tmp_user_catalog=$SCRATCH
2015	elif [[ $localhost = nech ]]
2016	then
2017	tmp_user_catalog=$WRKSHR
2018	else
2019	tmp_user_catalog=/tmp
2020	fi
2021	fi
2022	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2023
2024
2025	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2026	# BESTIMMEN
2027	if [[ "$tmp_data_catalog" = "" ]]
2028	then
2029	if [[ $localhost = nech ]]
2030	then
2031	tmp_data_catalog=$WRKSHR/mrun_restart_data
2032	else
2033	tmp_data_catalog=/tmp/mrun_restart_data
2034	fi
2035	fi
2036
2037
2038	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2039	# ERSETZEN
2040	if [[ $do_remote = false && $do_compile = true ]]
2041	then
2042	eval fopts=\"$fopts\"
2043	eval lopts=\"$lopts\"
2044	fi
2045
2046
2047
2048	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2049	fopts="$fopts $netcdf_inc $dvr_inc"
2050	lopts="$lopts $netcdf_lib $dvr_lib"
2051	ROPTS="$ropts"
2052	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2053	then
2054	XOPT="-X $numprocs"
2055	fi
2056
2057
2058
2059	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2060	# GRAMM BENOETIGT
2061	done=false
2062	while [[ $done = false ]]
2063	do
2064	cputime=$cpumax
2065	if (( $cputime == 0 ))
2066	then
2067	if [[ $do_batch = true ]]
2068	then
2069	printf "\n +++ cpu-time is undefined"
2070	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2071	printf "\n >>> "
2072	read cputime 1>/dev/null 2>&1
2073	else
2074	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2075	fi
2076	else
2077	done=true
2078	fi
2079	cpumax=$cputime
2080	done
2081
2082	(( minuten = cputime / 60 ))
2083	(( sekunden = cputime - minuten * 60 ))
2084
2085
2086	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2087	if [[ $do_batch = true ]]
2088	then
2089	done=false
2090	while [[ $done = false ]]
2091	do
2092	if (( memory == 0 ))
2093	then
2094	printf "\n +++ memory demand is undefined"
2095	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2096	printf "\n >>> "
2097	read memory 1>/dev/null 2>&1
2098	else
2099	done=true
2100	fi
2101	done
2102	fi
2103
2104
2105	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2106	if [[ $do_remote = true && -z $remote_username ]]
2107	then
2108	while [[ -z $remote_username ]]
2109	do
2110	printf "\n +++ username on remote host \"$host\" is undefined"
2111	printf "\n >>> Please type username:"
2112	printf "\n >>> "
2113	read remote_username
2114	done
2115	mc="$mc -u$remote_username"
2116	fi
2117
2118
2119	# set module load command and export for subjob
2120	if [[ "$modules" != "" ]]
2121	then
2122	if [[ $host = lctit ]]
2123	then
2124	export module_calls=". $modules"
2125	else
2126	export module_calls="module load ${modules};"
2127	fi
2128	fi
2129
2130	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2131	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2132	then
2133	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2134	then
2135	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2136	fi
2137	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2138	# then
2139	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2140	# echo "*** module_calls = $module_calls"
2141	# fi
2142	fi
2143
2144
2145	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2146	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2147	then
2148	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2149	then
2150	mpilib=mpt
2151	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2152	then
2153	mpilib=mvapich
2154	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2155	then
2156	mpilib=impi
2157	fi
2158	fi
2159
2160
2161
2162	###########################################################################
2163	# HEADER-AUSGABE
2164	###########################################################################
2165
2166
2167	calltime=$(date)
2168	printf "\n"
2169	# [[ $silent = false ]] && clear
2170	printf "#--------------------------------------------------------------# \n"
2171	printf "\| $version$calltime \| \n"
2172	printf "\| \| \n"
2173	spalte1="called on:"; spalte2=$localhost_realname
2174	printf "\| $spalte1$spalte2 \| \n"
2175	if [[ $local_compile = false ]]
2176	then
2177	if [[ $do_remote = true ]]
2178	then
2179	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2180	else
2181	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2182	fi
2183	else
2184	spalte1="compiling test only!"; spalte2=""
2185	fi
2186	printf "\| $spalte1$spalte2 \| \n"
2187	if [[ -n $numprocs ]]
2188	then
2189	spalte1="number of PEs:"; spalte2=$numprocs
2190	printf "\| $spalte1$spalte2 \| \n"
2191	fi
2192	if [[ -n $tasks_per_node ]]
2193	then
2194	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2195	printf "\| $spalte1$spalte2 \| \n"
2196	fi
2197	if [[ $use_openmp = true ]]
2198	then
2199	spalte1="threads per task:"; spalte2="$threads_per_task"
2200	printf "\| $spalte1$spalte2 \| \n"
2201	fi
2202	printf "\| \| \n"
2203	if [[ $do_compile = true ]]
2204	then
2205	if [[ "$mopts" != "" ]]
2206	then
2207	spalte1="make options:"; spalte2=$mopts
2208	printf "\| $spalte1$spalte2 \| \n"
2209	zeile=$(echo "$mopts" \| cut -c41-)
2210	while [[ "$zeile" != "" ]]
2211	do
2212	spalte1=""
2213	spalte2=$zeile
2214	printf "\| $spalte1$spalte2 \| \n"
2215	zeile=$(echo "$zeile" \| cut -c41-)
2216	done
2217	fi
2218
2219	spalte1="cpp directives:"; spalte2=$cpp_options
2220	printf "\| $spalte1$spalte2 \| \n"
2221	zeile=$(echo "$cpp_options" \| cut -c41-)
2222	while [[ "$zeile" != "" ]]
2223	do
2224	spalte1=""
2225	spalte2=$zeile
2226	printf "\| $spalte1$spalte2 \| \n"
2227	zeile=$(echo "$zeile" \| cut -c41-)
2228	done
2229
2230	spalte1="compiler options:"; spalte2="$fopts"
2231	printf "\| $spalte1$spalte2 \| \n"
2232	zeile=$(echo "$fopts" \| cut -c41-)
2233	while [[ "$zeile" != "" ]]
2234	do
2235	spalte1=""
2236	spalte2=$zeile
2237	printf "\| $spalte1$spalte2 \| \n"
2238	zeile=$(echo "$zeile" \| cut -c41-)
2239	done
2240
2241	spalte1="linker options:"; spalte2=$lopts
2242	printf "\| $spalte1$spalte2 \| \n"
2243	zeile=$(echo "$lopts" \| cut -c41-)
2244	while [[ "$zeile" != "" ]]
2245	do
2246	spalte1=""
2247	spalte2=$zeile
2248	printf "\| $spalte1$spalte2 \| \n"
2249	zeile=$(echo "$zeile" \| cut -c41-)
2250	done
2251
2252	spalte1="modules to be load:"; spalte2=$modules
2253	printf "\| $spalte1$spalte2 \| \n"
2254	zeile=$(echo "$modules" \| cut -c41-)
2255	while [[ "$zeile" != "" ]]
2256	do
2257	spalte1=""
2258	spalte2=$zeile
2259	printf "\| $spalte1$spalte2 \| \n"
2260	zeile=$(echo "$zeile" \| cut -c41-)
2261	done
2262
2263	spalte1="main program":; spalte2=$mainprog
2264	printf "\| $spalte1$spalte2 \| \n"
2265	else
2266	spalte1=executable:; spalte2=$executable
2267	printf "\| $spalte1$spalte2 \| \n"
2268	fi
2269	printf "\| \| \n"
2270	spalte1="base name of files":; spalte2=$fname
2271	printf "\| $spalte1$spalte2 \| \n"
2272	if [[ $fname != $afname ]]
2273	then
2274	spalte1="base name of input files":; spalte2=$afname
2275	printf "\| $spalte1$spalte2 \| \n"
2276	fi
2277	spalte1="INPUT control list":; spalte2=$input_list
2278	printf "\| $spalte1$spalte2 \| \n"
2279	spalte1="OUTPUT control list":; spalte2=$output_list
2280	printf "\| $spalte1$spalte2 \| \n"
2281
2282	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2283	then
2284	spalte1="memory demand / PE":; spalte2="$memory MB"
2285	printf "\| $spalte1$spalte2 \| \n"
2286	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2287	printf "\| $spalte1$spalte2 \| \n"
2288	fi
2289
2290	if [[ $do_compile = true ]]
2291	then
2292	printf "\| \| \n"
2293	printf "\| Files to be compiled: \| \n"
2294	zeile=$source_list
2295	while [[ "$zeile" != "" ]]
2296	do
2297	spalte3=$zeile
2298	printf "\| $spalte3 \| \n"
2299	zeile=$(echo "$zeile" \| cut -c61-)
2300	done
2301	fi
2302	printf "#--------------------------------------------------------------#"
2303
2304
2305
2306	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2307	if [[ $do_trace = true ]]
2308	then
2309	(( i = 0 ))
2310	while (( i < iin ))
2311	do
2312	(( i = i + 1 ))
2313	if (( i == 1 ))
2314	then
2315	printf "\n\n >>> INPUT-file assignments:\n"
2316	fi
2317	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2318	done
2319	(( i = 0 ))
2320	while (( i < iout ))
2321	do
2322	(( i = i + 1 ))
2323	if (( i == 1 ))
2324	then
2325	printf "\n\n >>> OUTPUT-file assignments:\n"
2326	fi
2327	printf "\n ${localout[$i]} : ${pathout[$i]}"
2328	done
2329	(( i = 0 ))
2330	while (( i < iic ))
2331	do
2332	(( i = i + 1 ))
2333	if (( i == 1 ))
2334	then
2335	printf "\n\n >>> INPUT-commands:\n"
2336	fi
2337	printf "\n ${in_command[$i]}"
2338	done
2339	(( i = 0 ))
2340	while (( i < ioc ))
2341	do
2342	(( i = i + 1 ))
2343	if (( i == 1 ))
2344	then
2345	printf "\n\n >>> OUTPUT-commands:\n"
2346	fi
2347	printf "\n ${out_command[$i]}"
2348	done
2349	fi
2350
2351
2352	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2353	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2354	then
2355	antwort=dummy
2356	printf "\n\n"
2357	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2358	do
2359	printf " >>> everything o.k. (y/n) ? "
2360	read antwort
2361	done
2362	if [[ $antwort = n \|\| $antwort = N ]]
2363	then
2364	locat=user_abort; (( iec = 0 )); exit
2365	fi
2366	if [[ $do_batch = true ]]
2367	then
2368	printf " >>> batch-job will be created and submitted"
2369	else
2370	if [[ $local_compile = false ]]
2371	then
2372	printf " >>> MRUN will now continue to execute on this machine"
2373	else
2374	printf " >>> a test compilation will now be carried out on this machine"
2375	fi
2376	fi
2377	fi
2378
2379
2380
2381
2382	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2383	# CHENDE AKTIONEN DURCHGEFUEHRT
2384	if [[ $do_batch = false ]]
2385	then
2386
2387
2388	# TEMPORAEREN KATALOG ERZEUGEN
2389	mkdir -p $TEMPDIR
2390	chmod go+rx $TEMPDIR
2391	tmpcreate=true
2392
2393	# set striping on lustre file system
2394	# if [[ $localhost = lcsgih ]]
2395	# then
2396	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2397	# lfs getstripe $TEMPDIR
2398	# fi
2399
2400
2401	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2402	# TEMPORAERES VERZEICHNIS KOPIEREN
2403	if [[ $do_compile = true ]]
2404	then
2405
2406	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2407	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2408	if [[ $localhost = nech ]]
2409	then
2410	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2411	if mkdir -p $TEMPDIR_COMPILE
2412	then
2413	printf "\n *** \"$TEMPDIR_COMPILE\" "
2414	printf "\n is generated as temporary directory for cross compiling\n"
2415	else
2416	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2417	printf "\n needed for cross compilation failed"
2418	locat=compile
2419	exit
2420	fi
2421	else
2422	TEMPDIR_COMPILE=$TEMPDIR
2423	fi
2424
2425
2426	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2427	line=""
2428	grep "%depository_path" $config_file > tmp_mrun
2429	while read line
2430	do
2431	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2432	then
2433	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2434	then
2435	global_depository_path=`echo $line \| cut -d" " -s -f2`
2436	fi
2437	fi
2438	done < tmp_mrun
2439
2440	line=""
2441	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2442	while read line
2443	do
2444	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2445	then
2446	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2447	then
2448	local_depository_path=`echo $line \| cut -d" " -s -f2`
2449	fi
2450	fi
2451	done < tmp_mrun
2452
2453	if [[ "$local_depository_path" = "" ]]
2454	then
2455	if [[ "$global_depository_path" != "" ]]
2456	then
2457	local_depository_path=$global_depository_path
2458	else
2459	printf "\n\n +++ no depository path found in configuration file"
2460	printf "\n for local host \"$localhost\" "
2461	printf "\n please set \"\%depository_path\" in configuration file\n"
2462	locat=config_file; exit
2463	fi
2464	fi
2465	eval local_depository_path=$local_depository_path
2466	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2467	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2468
2469
2470	basename=`print $mainprog \| cut -f1 -d"."`
2471	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2472	if [[ ! -f $make_depository ]]
2473	then
2474	printf "\n"
2475	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2476	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2477	else
2478	cp $make_depository $TEMPDIR_COMPILE
2479	cd $TEMPDIR_COMPILE
2480	tar -xf $make_depository > /dev/null 2>&1
2481	cd - > /dev/null
2482	fi
2483
2484	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2485
2486	else
2487
2488	cp $executable ${TEMPDIR}/a.out
2489
2490	fi
2491
2492
2493	# WECHSEL IN TEMPORAEREN KATALOG
2494	cd $TEMPDIR
2495	printf "\n *** changed to temporary directory: $TEMPDIR"
2496
2497
2498	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2499	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2500	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2501	# ERMITTELN
2502	(( i = 0 ))
2503	while (( i < iout ))
2504	do
2505	(( i = i + 1 ))
2506	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2507	then
2508	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2509	else
2510	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2511	fi
2512	done
2513
2514
2515	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2516	if [[ $do_compile = true ]]
2517	then
2518
2519
2520	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2521	printf "\n\n\n *** compilation starts \n$striche\n"
2522	printf " *** compilation with make using following options:\n"
2523	printf " make depository: $make_depository"
2524	if [[ "$mopts" != "" ]]
2525	then
2526	printf " make options: $mopts\n"
2527	fi
2528	printf " compilername: $compiler_name\n"
2529	printf " compiler options: $fopts\n"
2530	printf " preprocessor directives: $cpp_options \n"
2531	printf " linker options: $lopts \n"
2532	if [[ "$modules" != "" ]]
2533	then
2534	printf " modules to be load: $modules \n"
2535	fi
2536	printf " source code files: $source_list \n"
2537
2538	if [[ $localhost = nech ]]
2539	then
2540	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2541	cp $TEMPDIR_COMPILE/a.out .
2542	[[ $? != 0 ]] && compile_error=true
2543	rm -rf $TEMPDIR_COMPILE
2544	elif [[ $localhost = ibmh ]]
2545	then
2546	printf " compiler is called via ssh on \"plogin1\" \n"
2547	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2548	[[ ! -f a.out ]] && compile_error=true
2549	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2550	elif [[ $localhost = lcsgib ]]
2551	then
2552	printf " compiler is called via ssh on \"bicegate0\" \n"
2553	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2554	[[ ! -f a.out ]] && compile_error=true
2555	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2556	elif [[ $localhost = lcsgih ]]
2557	then
2558	printf " compiler is called via ssh on \"hicegate0\" \n"
2559	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2560	[[ ! -f a.out ]] && compile_error=true
2561	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2562	elif [[ $localhost = lcflow ]]
2563	then
2564	printf " compiler is called via ssh on \"flow\" \n"
2565	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2566	[[ ! -f a.out ]] && compile_error=true
2567	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2568	else
2569	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2570	[[ "$module_calls" != "" ]] && eval $module_calls
2571	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2572	fi
2573
2574	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2575	then
2576	printf "\n +++ error occured while compiling or linking"
2577	locat=compile
2578
2579	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2580	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2581	# then
2582	exit
2583	# else
2584	# locat=normal
2585	# fi
2586	else
2587	printf "$striche\n *** compilation finished \n"
2588	fi
2589	fi
2590
2591
2592	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2593	if [[ $local_compile = true ]]
2594	then
2595	cd $HOME
2596	rm -rf $TEMPDIR
2597	locat=local_compile; exit
2598	fi
2599
2600
2601	# BEREITSTELLEN DER INPUT-DATEIEN
2602	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2603	(( i = 0 ))
2604	while (( i < iin ))
2605	do
2606	(( i = i + 1 ))
2607	if (( i == 1 ))
2608	then
2609	printf "\n\n *** providing INPUT-files:\n$striche"
2610	fi
2611
2612
2613	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2614	if [[ "${transin[$i]}" = unavailable ]]
2615	then
2616	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2617	then
2618	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2619	printf "\n is not available!"
2620	else
2621	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2622	printf "\n is not available!"
2623	fi
2624	continue
2625	fi
2626
2627	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2628	files_for_pes=false; datentyp=file
2629	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2630	then
2631	files_for_pes=true; datentyp=directory
2632	actionin[$i]=""
2633	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2634	then
2635	actionin[$i]=""
2636	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2637	then
2638	files_for_pes=true; datentyp=directory
2639	actionin[$i]="ar"
2640	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2641	then
2642	actionin[$i]="ar"
2643	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2644	then
2645	files_for_pes=true; datentyp=directory
2646	actionin[$i]="fl"
2647	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2648	then
2649	actionin[$i]="fl"
2650	fi
2651
2652	if [[ $files_for_pes = true ]]
2653	then
2654	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2655	else
2656	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2657	fi
2658
2659	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2660	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2661	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2662	# SERVER ZU HOLEN
2663	if [[ "${actionin[$i]}" = fl ]]
2664	then
2665	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2666	if [[ $files_for_pes = false ]]
2667	then
2668	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2669	then
2670	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2671	got_tmp[$i]=true
2672	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2673	then
2674	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2675	printf "\n *** trying to use backup copy in \"$WORK\" "
2676	cp $WORK/${frelin[$i]} ${localin[$i]}
2677	else
2678	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2679	printf "\n or \"$tmp_data_catalog\" does not exist!"
2680	printf "\n *** trying to get copy from archive"
2681	actionin[$i]=ar
2682	fi
2683	else
2684	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2685	then
2686	mkdir ${localin[$i]}
2687	cd $tmp_data_catalog/${frelin[$i]}
2688	for file in $(ls *)
2689	do
2690	ln $file $TEMPDIR/${localin[$i]}
2691	done
2692	cd $TEMPDIR
2693	got_tmp[$i]=true
2694	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2695	then
2696	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2697	printf "\n *** trying to use backup copy in \"$WORK\" "
2698	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2699	else
2700	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2701	printf "\n or \"$tmp_data_catalog\" does not exist!"
2702	printf "\n *** trying to get copy from archive"
2703	actionin[$i]=ar
2704	fi
2705	fi
2706	fi
2707
2708
2709	# DATEI LIEGT AUF ARCHIV-SERVER
2710	if [[ "${actionin[$i]}" = ar ]]
2711	then
2712
2713	if [[ $files_for_pes = false ]]
2714	then
2715	printf "\n file will be restored from archive-system ($archive_system)!"
2716	else
2717	printf "\n directory will be restored from archive-system ($archive_system)!"
2718	fi
2719
2720	file_restored=false
2721
2722	if [[ $archive_system = asterix ]]
2723	then
2724	do_stagein=true
2725	(( stagein_anz = 0 ))
2726	while [[ $do_stagein = true ]]
2727	do
2728	if [[ $files_for_pes = false ]]
2729	then
2730	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2731	else
2732	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2733	fi
2734	cat STAGEIN_OUTPUT
2735	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2736	then
2737	file_restored=true
2738	do_stagein=false
2739	else
2740	(( stagein_anz = stagein_anz + 1 ))
2741	if (( stagein_anz == 10 ))
2742	then
2743	printf "\n +++ stagein stoped after 10 tries"
2744	locat=stage
2745	exit
2746	fi
2747	printf "\n +++ restoring from archive failed, trying again:"
2748	sleep 900
2749	fi
2750	done
2751	elif [[ $archive_system = DMF ]]
2752	then
2753	if [[ $files_for_pes = false ]]
2754	then
2755	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2756	locat=DMF
2757	exit
2758	else
2759	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2760	cp -r $ARCHIVE/${frelin[$i]} $PWD
2761	file_restored=true
2762	fi
2763	elif [[ $archive_system = tivoli ]]
2764	then
2765	if [[ $files_for_pes = false ]]
2766	then
2767	if [[ $localhost = lcsgih ]]
2768	then
2769	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2770	else
2771	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2772	fi
2773	else
2774	(( inode = 0 ))
2775	while (( inode < nodes ))
2776	do
2777	if [[ $localhost = lcsgih ]]
2778	then
2779	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2780	else
2781	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2782	fi
2783	(( inode = inode + 1 ))
2784	done
2785	fi
2786	file_restored=true
2787	elif [[ $archive_system = ut ]]
2788	then
2789	if [[ $files_for_pes = false ]]
2790	then
2791	cp $UT/${frelin[$i]} .
2792	else
2793	(( inode = 0 ))
2794	while (( inode < nodes ))
2795	do
2796	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2797	(( inode = inode + 1 ))
2798	done
2799	fi
2800	file_restored=true
2801	else
2802	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2803	locat=rearchive
2804	exit
2805	fi
2806
2807	if [[ $file_restored = true ]]
2808	then
2809
2810	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2811	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2812	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2813	if [[ $files_for_pes = false ]]
2814	then
2815	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2816	else
2817	mkdir $tmp_data_catalog/${frelin[$i]}
2818	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2819	fi
2820	got_tmp[$i]=true
2821
2822	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2823	mv ${frelin[$i]} ${localin[$i]}
2824
2825	fi
2826	fi
2827
2828
2829	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2830	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2831	then
2832
2833	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2834	then
2835
2836	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2837	printf "\n file will be provided for $numprocs processors"
2838	mkdir ${localin[$i]}
2839	ival=$numprocs
2840	(( ii = 0 ))
2841	while (( ii <= ival-1 ))
2842	do
2843	if (( ii < 10 ))
2844	then
2845	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2846	elif (( ii < 100 ))
2847	then
2848	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2849	elif (( ii < 1000 ))
2850	then
2851	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2852	else
2853	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2854	fi
2855	(( ii = ii + 1 ))
2856	done
2857
2858	else
2859
2860	if [[ $files_for_pes = true ]]
2861	then
2862
2863	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2864	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2865	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2866	# PER MOVE UMBENANNT WERDEN
2867	printf "\n providing $numprocs files for the respective processors"
2868	mkdir ${localin[$i]}
2869	if [[ $link_local_input = true ]]
2870	then
2871	printf " using ln -f\n"
2872	cd ${absnamein[$i]}
2873	for file in $(ls *)
2874	do
2875	ln -f $file ${localin[$i]}
2876	done
2877	cd $TEMPDIR
2878	fi
2879	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2880	if [[ ! -f "${localin[$i]}/_0000" ]]
2881	then
2882	if [[ $link_local_input = true ]]
2883	then
2884	printf " ln failed for .../_0000, using cp...\n"
2885	fi
2886	cp -r ${absnamein[$i]}/* ${localin[$i]}
2887	fi
2888
2889	else
2890	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2891	if [[ $link_local_input = true ]]
2892	then
2893	printf " using ln -f\n"
2894	ln -f ${absnamein[$i]} ${localin[$i]}
2895	fi
2896	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2897	if [[ ! -f "${localin[$i]}" ]]
2898	then
2899	if [[ $link_local_input = true ]]
2900	then
2901	printf " ln failed, using cp...\n"
2902	fi
2903	cp ${absnamein[$i]} ${localin[$i]}
2904	fi
2905	fi
2906	fi
2907	fi
2908
2909	done
2910	if (( i != 0 ))
2911	then
2912	printf "\n$striche\n *** all INPUT-files provided \n"
2913	fi
2914
2915
2916	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2917	(( i = 0 ))
2918	while (( i < iic ))
2919	do
2920	(( i = i + 1 ))
2921	if (( i == 1 ))
2922	then
2923	printf "\n\n *** execution of INPUT-commands:\n$striche"
2924	fi
2925	printf "\n >>> ${in_command[$i]}"
2926	eval ${in_command[$i]}
2927	if (( i == iic ))
2928	then
2929	printf "\n$striche\n"
2930	fi
2931	done
2932
2933
2934	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2935	cpurest=${cpumax}.
2936
2937
2938	# START DVR STREAMING SERVER
2939	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2940	then
2941	if [[ "$dvr_server" != "" ]]
2942	then
2943
2944	printf "\n\n *** preparing the dvr streaming server configuration file"
2945
2946	# Check, if a dvr server is already running
2947	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2948	if [[ "$running_dvrserver_id" != "" ]]
2949	then
2950
2951	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2952	printf "\n This server is used instead starting a new one!"
2953	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2954
2955	else
2956
2957	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2958	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2959	then
2960	cp ${PALM_BIN}/.dvrserver.config .
2961
2962	# Entering the BASEDIR, UID and GID into this file
2963	user_id=`id -u`
2964	group_id=`id -g`
2965	# & is needed as seperator, because TEMPDIR contains /
2966	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2967	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2968	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2969	mv .dvrserver.3 .dvrserver.config
2970	rm .dvrserver.1 .dvrserver.2
2971
2972	# Start dvr server in background, get his id and print on terminal
2973	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2974	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2975	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2976	local_dvrserver_running=.TRUE.
2977	else
2978	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2979	printf "\n \"$PALM_BIN\" "
2980	locat=dvr
2981	exit
2982	fi
2983
2984	fi
2985
2986	else
2987	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2988	fi
2989	fi
2990
2991
2992	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2993	# LESEN VON PALM)
2994	cat > ENVPAR << %%END%%
2995	&envpar run_identifier = '$fname', host = '$localhost',
2996	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2997	maximum_cpu_time_allowed = ${cpumax}.,
2998	revision = '$global_revision',
2999	local_dvrserver_running = $local_dvrserver_running /
3000
3001	%%END%%
3002
3003
3004	# PROGRAMMSTART
3005	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3006	PATH=$PATH:$TEMPDIR
3007
3008	# MPI debug option (argument checking, slows down execution due to increased latency)
3009	if [[ "$mpi_debug" = true ]]
3010	then
3011	export MPI_CHECK_ARGS=1
3012	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3013	fi
3014
3015	if [[ "$totalview" = true ]]
3016	then
3017	printf "\n *** totalview debugger will be used"
3018	tv_opt="-tv"
3019	else
3020	tv_opt=""
3021	fi
3022
3023	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3024	then
3025	if [[ "$ENVIRONMENT" = BATCH ]]
3026	then
3027	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3028	then
3029	printf "\n +++ debug is allowed in interactive mode only"
3030	locat=debug
3031	exit
3032	fi
3033	fi
3034	if [[ $localhost = decalpha ]]
3035	then
3036	dxladebug a.out
3037	elif [[ $localhost = ibmh ]]
3038	then
3039
3040	# SETUP THE IBM MPI ENVIRONMENT
3041	export MP_SHARED_MEMORY=yes
3042	export AIXTHREADS_SCOPE=S
3043	export OMP_NUM_THREADS=$threads_per_task
3044	export AUTHSTATE=files
3045	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3046
3047	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3048	export MP_ADAPTER_USE=shared
3049	export MP_CPU_USE=multiple
3050	export MP_TIMEOUT=1200
3051
3052	unset MP_TASK_AFFINITY
3053
3054	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3055	#(( ii = 1 ))
3056	#while (( ii <= $numprocs ))
3057	#do
3058	# echo $localhost_realname >> hostfile
3059	# (( ii = ii + 1 ))
3060	#done
3061	#export MP_HOSTFILE=hostfile
3062
3063	if [[ "$LOADLBATCH" = yes ]]
3064	then
3065	totalview poe a.out $ROPTS
3066	else
3067	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3068	export TVDSVRLAUNCHCMD=ssh
3069	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3070	fi
3071	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3072	then
3073	# CURRENTLY NO DEBUGGER ON LCSGI
3074	if [[ $run_coupled_model = true ]]
3075	then
3076	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3077	locat=debug
3078	exit
3079	else
3080	echo "no_coupling" > runfile_atmos
3081	fi
3082	(( ii = $numprocs / $threads_per_task ))
3083	export OMP_NUM_THREADS=$threads_per_task
3084	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3085	if [[ $threads_per_task != 1 ]]
3086	then
3087	printf "\n threads per task: $threads_per_task"
3088	fi
3089	printf "\n\n"
3090	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3091	then
3092	# export MPI_LAUNCH_TIMEOUT=360
3093	if [[ "$totalview" = true ]]
3094	then
3095	printf "\n running totalview debugger"
3096	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3097	else
3098	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3099	fi
3100	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3101	then
3102	# ulimit -s 300000 # A too large stack size causes problems
3103	# export MV2_NUM_PORTS=2
3104	# export MV2_CPU_MAPPING=0:1:2:3
3105	if [[ "$totalview" = true ]]
3106	then
3107	printf "\n running totalview debugger"
3108	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3109	else
3110	mpiexec ./a.out $ROPTS < runfile_atmos
3111	fi
3112	fi
3113	else
3114	printf "\n +++ no debug available on \"$localhost\" "
3115	printf "\n or not implemented in mrun so far"
3116	locat=debug
3117	exit
3118	fi
3119
3120	# end debug mode
3121	else
3122
3123	# normal execution
3124	if [[ -n $numprocs ]]
3125	then
3126	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3127	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3128	then
3129	# SETUP THE IBM MPI ENVIRONMENT
3130	if [[ $host != ibmh && $host != ibmkisti ]]
3131	then
3132	export MP_SHARED_MEMORY=yes
3133	export AIXTHREAD_SCOPE=S
3134	export OMP_NUM_THREADS=$threads_per_task
3135	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3136	export AUTHSTATE=files
3137	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3138	# export MP_PRINTENV=yes
3139
3140	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3141	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3142	export MP_WAIT_MODE=poll
3143	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3144	fi
3145
3146	if [[ $host = ibmkisti ]]
3147	then
3148	export LANG=en_US
3149	export MP_SHARED_MEMORY=yes
3150	if [[ $threads_per_task = 1 ]]
3151	then
3152	export MP_SINGLE_THREAD=yes
3153	export MEMORY_AFFINITY=MCM
3154	else
3155	export OMP_NUM_THREADS=$threads_per_task
3156	fi
3157	fi
3158
3159	if [[ "$LOADLBATCH" = yes ]]
3160	then
3161	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3162	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3163	then
3164	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3165	else
3166	if [[ $run_coupled_model = false ]]
3167	then
3168	if [[ "$ocean_file_appendix" = true ]]
3169	then
3170	echo "precursor_ocean" > runfile_atmos
3171	else
3172	echo "precursor_atmos" > runfile_atmos
3173	fi
3174	else
3175	(( iia = $numprocs_atmos / $threads_per_task ))
3176	(( iio = $numprocs_ocean / $threads_per_task ))
3177	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3178	printf "\n using $coupled_mode coupling"
3179	printf "\n\n"
3180	echo "coupled_run $iia $iio" > runfile_atmos
3181	fi
3182	poe ./a.out $ROPTS < runfile_atmos
3183	fi
3184	else
3185	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3186	then
3187	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3188	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3189	then
3190	if [[ -f $hostfile ]]
3191	then
3192	cp $hostfile hostfile
3193	else
3194	(( ii = 1 ))
3195	while (( ii <= $numprocs ))
3196	do
3197	echo $localhost_realname >> hostfile
3198	(( ii = ii + 1 ))
3199	done
3200	fi
3201	export MP_HOSTFILE=hostfile
3202	if [[ $run_coupled_model = false ]]
3203	then
3204	if [[ "$ocean_file_appendix" = true ]]
3205	then
3206	echo "precursor_ocean" > runfile_atmos
3207	else
3208	echo "precursor_atmos" > runfile_atmos
3209	fi
3210	else
3211	(( iia = $numprocs_atmos / $threads_per_task ))
3212	(( iio = $numprocs_ocean / $threads_per_task ))
3213	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3214	printf "\n using $coupled_mode coupling"
3215	printf "\n\n"
3216	echo "coupled_run $iia $iio" > runfile_atmos
3217	fi
3218	if [[ $localhost = ibmy ]]
3219	then
3220	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3221	else
3222	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3223	fi
3224
3225	else
3226	if [[ "$host_file" = "" ]]
3227	then
3228	printf "\n +++ no hostfile given in configuration file"
3229	locat=config_file
3230	exit
3231	else
3232	eval host_file=$host_file
3233	fi
3234	export MP_HOSTFILE=$host_file
3235	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3236	fi
3237	fi
3238	elif [[ $host = nech \|\| $host = necriam ]]
3239	then
3240	(( ii = nodes ))
3241	if [[ $ii = 1 ]]
3242	then
3243	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3244	export MPIPROGINF=YES
3245	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3246	echo "*** execution on single node with mpirun"
3247	mpirun -np $numprocs ./a.out $ROPTS
3248	else
3249	(( i = 0 ))
3250	while (( i < ii ))
3251	do
3252	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3253	(( i = i + 1 ))
3254	done
3255
3256	echo "#!/bin/sh" > mpi_exec_shell
3257	echo " " >> mpi_exec_shell
3258	echo "set -u" >> mpi_exec_shell
3259	echo "F_ERRCNT=0" >> mpi_exec_shell
3260	echo "MPIPROGINV=YES" >> mpi_exec_shell
3261	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3262	echo "cpurest=$cpurest" >> mpi_exec_shell
3263	echo "fname=$fname" >> mpi_exec_shell
3264	echo "localhost=$localhost" >> mpi_exec_shell
3265	echo "return_addres=$return_addres" >> mpi_exec_shell
3266	echo "return_username=$return_username" >> mpi_exec_shell
3267	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3268	echo "write_binary=$write_binary" >> mpi_exec_shell
3269	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3270	echo " " >> mpi_exec_shell
3271	echo "export F_ERRCNT" >> mpi_exec_shell
3272	echo "export MPIPROGINV" >> mpi_exec_shell
3273	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3274	echo "export cpurest" >> mpi_exec_shell
3275	echo "export fname" >> mpi_exec_shell
3276	echo "export localhost" >> mpi_exec_shell
3277	echo "export return_addres" >> mpi_exec_shell
3278	echo "export return_username" >> mpi_exec_shell
3279	echo "export tasks_per_node" >> mpi_exec_shell
3280	echo "export write_binary" >> mpi_exec_shell
3281	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3282	echo " " >> mpi_exec_shell
3283	echo "exec ./a.out" >> mpi_exec_shell
3284
3285	chmod u+x mpi_exec_shell
3286	export MPIPROGINF=YES
3287	mpirun -f multinode_config &
3288	wait
3289
3290	fi
3291	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3292	then
3293
3294	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3295	# DOES NOT EXIST
3296	if [[ $host != lcsgih && $host != lcsgib ]]
3297	then
3298	if [[ -f $hostfile ]]
3299	then
3300	cp $hostfile hostfile
3301	(( ii = $numprocs / $threads_per_task ))
3302	else
3303	(( ii = 1 ))
3304	while (( ii <= $numprocs / $threads_per_task ))
3305	do
3306	echo $localhost_realname >> hostfile
3307	(( ii = ii + 1 ))
3308	done
3309	fi
3310	eval zeile=\"`head -n $ii hostfile`\"
3311	printf "\n *** running on: $zeile"
3312	fi
3313
3314	(( ii = $numprocs / $threads_per_task ))
3315	export OMP_NUM_THREADS=$threads_per_task
3316	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3317	if [[ $threads_per_task != 1 ]]
3318	then
3319	# increase stack size to unlimited, because large runs
3320	# may abort otherwise
3321	ulimit -Ss unlimited
3322	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3323	fi
3324	if [[ $run_coupled_model = false ]]
3325	then
3326	if [[ "$ocean_file_appendix" = true ]]
3327	then
3328	echo "precursor_ocean" > runfile_atmos
3329	else
3330	echo "precursor_atmos" > runfile_atmos
3331	fi
3332	printf "\n\n"
3333	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3334	then
3335	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3336	then
3337	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3338	# export MPI_DSM_DISTRIBUTE=1
3339	# MPI_DSM_CPULIST: pin MPI processes to cores
3340	if [[ $use_openmp = false ]]
3341	then
3342	if [[ "$sgi_feature" = ice2 ]]
3343	then
3344	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3345	else
3346	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3347	fi
3348	else
3349	unset MPI_DSM_CPULIST
3350	fi
3351	# MPI_IB_RAILS: use both IB rails on ICE2
3352	export MPI_BUFS_PER_HOST=512
3353	export MPI_IB_RAILS=2
3354	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3355	export MPI_CONNECTIONS_THRESHOLD=8192
3356	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3357	export MPI_TYPE_DEPTH=20
3358	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3359	export MPI_GROUP_MAX=64
3360	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3361	if [[ $use_openmp = true ]]
3362	then
3363	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3364	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3365	else
3366	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3367	fi
3368
3369	# next is test for openmp usage
3370	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3371	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3372	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3373	then
3374	export MV2_NUM_PORTS=2
3375	# The default setting of MV2_CPU_MAPPING gives best results
3376	# export MV2_ENABLE_AFFINITY=1
3377	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3378	# if [[ "$sgi_feature" = ice2 ]]
3379	# then
3380	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3381	# else
3382	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3383	# fi
3384	if [[ $use_openmp = true ]]
3385	then
3386	unset MV2_CPU_MAPPING
3387	export MV2_ENABLE_AFFINITY=0
3388	fi
3389	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3390	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3391	if [[ $use_openmp = true ]]
3392	then
3393	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3394	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3395	else
3396	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3397	fi
3398	elif [[ "$mpilib" = impi ]]
3399	then
3400	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3401	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3402	fi
3403	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3404	then
3405	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3406	elif [[ $host = lcflow ]]
3407	then
3408	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3409	else
3410	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3411	fi
3412	else
3413
3414	# currently there is no full MPI-2 support on ICE and XT4
3415	(( iia = $numprocs_atmos / $threads_per_task ))
3416	(( iio = $numprocs_ocean / $threads_per_task ))
3417	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3418	printf "\n using $coupled_mode coupling"
3419	printf "\n\n"
3420
3421	if [[ $coupled_mode = "mpi2" ]]
3422	then
3423	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3424	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3425	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3426	then
3427
3428	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3429	then
3430	# export MPI_LAUNCH_TIMEOUT=360
3431	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3432	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3433	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3434	then
3435	# ulimit -s 300000 # A too large stack size causes problems
3436	# export MV2_NUM_PORTS=2
3437	# export MV2_CPU_MAPPING=0:1:2:3
3438	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3439	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3440	fi
3441
3442	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3443	then
3444
3445	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3446	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3447
3448	else
3449	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3450	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3451	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3452	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3453	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3454	fi
3455	wait
3456
3457	else
3458
3459	echo "coupled_run $iia $iio" > runfile_atmos
3460	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3461	then
3462
3463	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3464	then
3465	# export MPI_LAUNCH_TIMEOUT=360
3466	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3467	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3468	then
3469	# ulimit -s 300000 # A too large stack size causes problems
3470	# export MV2_NUM_PORTS=2
3471	# export MV2_CPU_MAPPING=0:1:2:3
3472	mpiexec ./a.out $ROPTS < runfile_atmos
3473	fi
3474
3475	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3476	then
3477
3478	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3479
3480	elif [[ $host = lck \|\| $host = lckordi ]]
3481	then
3482	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3483	fi
3484	wait
3485	fi
3486
3487	fi
3488	elif [[ $host = decalpha ]]
3489	then
3490	dmpirun -np $numprocs a.out $ROPTS
3491	elif [[ $host = lckyoto ]]
3492	then
3493	set -xv
3494	export P4_RSHCOMMAND=plesh
3495	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3496	if [[ "$ENVIRONMENT" = BATCH ]]
3497	then
3498	if [[ "$cond2" = fujitsu ]]
3499	then
3500	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3501	elif [[ "cond2" = pgi ]]
3502	then
3503	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3504	else
3505	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3506	fi
3507	else
3508	if [[ "$cond2" = "" ]]
3509	then
3510	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3511	else
3512	mpirun -np $numprocs ./a.out $ROPTS
3513	fi
3514	fi
3515	set +xv
3516	elif [[ $host = lctit ]]
3517	then
3518	export OMP_NUM_THREADS=$threads_per_task
3519	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3520	if [[ "$threads_per_task" != 1 ]]
3521	then
3522	export MV2_ENABLE_AFFINITY=0
3523	fi
3524	echo "----- PBS_NODEFILE content:"
3525	cat $PBS_NODEFILE
3526	echo "-----"
3527	(( ii = $numprocs / $threads_per_task ))
3528	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3529	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3530	else
3531	mpprun -n $numprocs a.out $ROPTS
3532	fi
3533	[[ $? != 0 ]] && execution_error=true
3534
3535
3536	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3537	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3538	then
3539	apprentice
3540	fi
3541	else
3542	a.out $ROPTS
3543	fi
3544	fi
3545	if [[ $? != 0 \|\| $execution_error = true ]]
3546	then
3547
3548	# ABBRUCH BEI LAUFZEITFEHLER
3549	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3550	printf "\n +++ runtime error occured"
3551	locat=execution
3552	exit
3553	else
3554	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3555	printf "\n$striche\n *** execution finished \n"
3556
3557	# Stop the dvr streaming server and process the dvr output in order
3558	# to create dvrs- and html-files containing all streams
3559	if [[ "$dvrserver_id" != "" ]]
3560	then
3561	kill $dvrserver_id
3562	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3563
3564	# If there is a directory, data have been output by the
3565	# streaming server. Otherwise, user has chosen dvrp_output=local
3566	if [[ -d DATA_DVR ]]
3567	then
3568
3569	# Add the current dvr configuration file to the dvr output
3570	# directory
3571	cp .dvrserver.config DATA_DVR
3572
3573	# Process the dvr output (option -s for also generating
3574	# sequence mode data)
3575	process_dvr_output -d DATA_DVR -f $fname -s
3576
3577	else
3578
3579	# Process the local output
3580	process_dvr_output -l -d DATA_DVR -f $fname
3581
3582	fi
3583
3584	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3585	then
3586
3587	# Process dvr output generated in local mode (dvrp_output=local)
3588	process_dvr_output -l -d DATA_DVR -f $fname
3589
3590	fi
3591	fi
3592
3593
3594
3595	# Call of combine_plot_fields in order to merge single files written
3596	# by each PE into one file.
3597	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3598	then
3599	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3600	printf "\n 2d- and/or 3d-data may be incomplete!"
3601	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3602	else
3603	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3604	combine_plot_fields${block}.x
3605	fi
3606
3607
3608
3609	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3610	(( i = 0 ))
3611	while (( i < ioc ))
3612	do
3613	(( i = i + 1 ))
3614	if (( i == 1 ))
3615	then
3616	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3617	fi
3618	printf "\n >>> ${out_command[$i]}"
3619	eval ${out_command[$i]}
3620	if (( i == ioc ))
3621	then
3622	printf "\n$striche\n"
3623	fi
3624	done
3625
3626
3627	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3628	if [[ $do_trace = true ]]
3629	then
3630	printf "\n\n"
3631	ls -al
3632	fi
3633
3634
3635
3636	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3637	(( i = 0 ))
3638	while (( i < iout ))
3639	do
3640	(( i = i + 1 ))
3641	if (( i == 1 ))
3642	then
3643	printf "\n\n *** saving OUTPUT-files:\n$striche"
3644	fi
3645
3646	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3647	files_for_pes=false; filetyp=file
3648	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3649	then
3650	files_for_pes=true; filetyp=directory
3651	actionout[$i]=""
3652	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3653	then
3654	actionout[$i]=""
3655	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3656	then
3657	files_for_pes=true; filetyp=directory
3658	actionout[$i]="ar"
3659	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3660	then
3661	actionout[$i]="ar"
3662	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3663	then
3664	files_for_pes=true; filetyp=directory
3665	actionout[$i]="fl"
3666	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3667	then
3668	actionout[$i]="fl"
3669	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3670	then
3671	files_for_pes=true; filetyp=directory
3672	actionout[$i]="tr"
3673	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3674	then
3675	actionout[$i]="tr"
3676	fi
3677
3678	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3679	then
3680	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3681	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3682	then
3683	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3684	else
3685
3686
3687	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3688	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3689	# REMOTE-RECHNUNGEN
3690	if [[ "${actionout[$i]}" = tr ]]
3691	then
3692	if [[ $localhost != $fromhost ]]
3693	then
3694	if [[ $files_for_pes = false ]]
3695	then
3696	cps=""
3697	cst=""
3698	else
3699	cps=-c
3700	cst="/"
3701	fi
3702	if [[ $localhost = nech ]]
3703	then
3704
3705	# TRANSFER IN EIGENSTAENDIGEM JOB
3706	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3707	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3708	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3709	if [[ $files_for_pes = false ]]
3710	then
3711	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3712	else
3713	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3714	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3715	fi
3716
3717	echo "set -x" > transfer_${localout[$i]}
3718	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3719
3720	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3721	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3722	printf "\n or higher cycle\n"
3723	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3724
3725	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3726
3727	if [[ $localhost = nech ]]
3728	then
3729	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3730	else
3731	if [[ "$LOGNAME" = b323013 ]]
3732	then
3733	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3734	else
3735	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3736	fi
3737	fi
3738
3739	else
3740
3741	# TRANSFER INNERHALB DIESES JOBS
3742	transfer_failed=false
3743	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3744	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3745	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3746	[[ $? != 0 ]] && transfer_failed=true
3747
3748	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3749	# LOKALER MASCHINE ANLEGEN
3750	if [[ $transfer_failed = true ]]
3751	then
3752	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3753	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3754
3755	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3756	# ANLEGEN.
3757	eval local_catalog=${pathout[$i]}
3758	if [[ ! -d $local_catalog ]]
3759	then
3760	printf " *** local directory does not exist. Trying to create:\n"
3761	printf " $local_catalog \n"
3762	mkdir -p $local_catalog
3763	fi
3764	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3765	transfer_problems=true
3766	fi
3767	fi
3768	else
3769
3770	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3771	actionout[$i]=""
3772	fi
3773	fi
3774
3775
3776	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3777	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3778	# REMOTE-RECHNUNGEN
3779	if [[ "${actionout[$i]}" = tra ]]
3780	then
3781	if [[ $localhost != $fromhost ]]
3782	then
3783	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3784	then
3785
3786	# TRANSFER IN EIGENSTAENDIGEM JOB
3787	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3788	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3789	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3790	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3791
3792	echo "set -x" > transfer_${localout[$i]}
3793	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3794
3795	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3796	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3797	printf "\n or higher cycle\n"
3798	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3799
3800	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3801
3802	if [[ $localhost = nech ]]
3803	then
3804	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3805	else
3806	if [[ $LOGNAME = b323013 ]]
3807	then
3808	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3809	else
3810	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3811	fi
3812	fi
3813
3814	else
3815
3816	# TRANSFER INNERHALB DIESES JOBS
3817	transfer_failed=false
3818	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3819	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3820	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3821	[[ $? != 0 ]] && transfer_failed=true
3822
3823	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3824	# LOKALER MASCHINE ANLEGEN
3825	if [[ $transfer_failed = true ]]
3826	then
3827	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3828	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3829
3830	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3831	# ANLEGEN
3832	eval local_catalog=${pathout[$i]}
3833	if [[ ! -d $local_catalog ]]
3834	then
3835	printf " *** local directory does not exist. Trying to create:\n"
3836	printf " $local_catalog \n"
3837	mkdir -p $local_catalog
3838	fi
3839
3840	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3841	transfer_problems=true
3842	fi
3843	fi
3844	else
3845
3846	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3847	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3848	actionout[$i]=a
3849	fi
3850	fi
3851
3852
3853	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3854	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3855	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3856	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3857	if [[ "${actionout[$i]}" = fl ]]
3858	then
3859	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3860	chmod g+rx $tmp_data_catalog
3861	if [[ $files_for_pes = false ]]
3862	then
3863	printf "\n >>> OUTPUT: ${localout[$i]} to"
3864	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3865	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3866	else
3867	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3868	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3869	mkdir $tmp_data_catalog/${frelout[$i]}
3870	cd ${localout[$i]}
3871	for file in $(ls *)
3872	do
3873	ln -f $file $tmp_data_catalog/${frelout[$i]}
3874	done
3875	cd $TEMPDIR
3876	fi
3877
3878
3879	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3880	if [[ $store_on_archive_system = true ]]
3881	then
3882
3883	if [[ $archive_system = asterix ]]
3884	then
3885	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3886	if [[ $files_for_pes = false ]]
3887	then
3888	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3889	else
3890	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3891	fi
3892	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3893	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3894	echo "then" >> archive_${frelout[$i]}
3895	echo " do_stageout=false" >> archive_${frelout[$i]}
3896	echo "else" >> archive_${frelout[$i]}
3897	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3898	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3899	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3900	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3901	if [[ $files_for_pes = false ]]
3902	then
3903	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3904	else
3905	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3906	fi
3907	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3908	echo "fi" >> archive_${frelout[$i]}
3909	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3910	elif [[ $archive_system = DMF ]]
3911	then
3912	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3913	if [[ $files_for_pes = false ]]
3914	then
3915	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3916	locat=DMF
3917	exit
3918	else
3919	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3920	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3921	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3922	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3923	fi
3924	elif [[ $archive_system = tivoli ]]
3925	then
3926	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3927	if [[ $files_for_pes = false ]]
3928	then
3929	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3930	echo "set -x" >> archive_${frelout[$i]}
3931	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3932	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3933	else
3934
3935	echo "set -x" >> archive_${frelout[$i]}
3936	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3937	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3938	cd $tmp_data_catalog
3939	all_files=`ls -1 ${frelout[$i]}/*`
3940	cd - > /dev/null
3941	(( inode = 0 ))
3942	(( tp1 = tasks_per_node + 1 ))
3943	while (( inode < nodes ))
3944	do
3945	# echo "*** all_files = \"$all_files\" "
3946	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3947	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3948	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3949	# echo "*** files = \"$files\" "
3950	# echo "*** all_files = \"$all_files\" "
3951	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3952	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3953	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3954	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3955	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3956	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3957	(( inode = inode + 1 ))
3958	done
3959	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3960	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3961	fi
3962	elif [[ $archive_system = ut ]]
3963	then
3964	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3965	if [[ $files_for_pes = false ]]
3966	then
3967	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3968	echo "set -x" >> archive_${frelout[$i]}
3969	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3970	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3971	else
3972
3973	echo "set -x" >> archive_${frelout[$i]}
3974	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3975	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3976	cd $tmp_data_catalog
3977	all_files=`ls -1 ${frelout[$i]}/*`
3978	cd - > /dev/null
3979	(( inode = 0 ))
3980	(( tp1 = tasks_per_node + 1 ))
3981	while (( inode < nodes ))
3982	do
3983	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3984	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3985	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3986	(( inode = inode + 1 ))
3987	done
3988	fi
3989	elif [[ $archive_system = none ]]
3990	then
3991	printf " +++ archiving on $localhost not available!\n"
3992	fi
3993
3994	if [[ $archive_system != none ]]
3995	then
3996	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3997	then
3998	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3999	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4000	elif [[ $localhost = nech ]]
4001	then
4002	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4003	fi
4004	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4005	fi
4006	else
4007	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4008	fi
4009
4010
4011	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4012	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4013	if [[ $files_for_pes = false ]]
4014	then
4015	cat /dev/null > ${pathout[$i]}
4016	else
4017	mkdir -p ${pathout[$i]}
4018	fi
4019
4020	fi
4021
4022
4023	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4024	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4025	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4026	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4027	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4028	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4029	if [[ "${actionout[$i]}" = ar ]]
4030	then
4031	if [[ $files_for_pes = false ]]
4032	then
4033	printf "\n >>> OUTPUT: ${localout[$i]} to"
4034	printf "\n ${pathout[$i]}"
4035	printf "\n File will be copied to archive-system ($archive_system) !\n"
4036	else
4037	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4038	printf "\n ${pathout[$i]}"
4039	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4040	fi
4041	mv ${localout[$i]} ${frelout[$i]}
4042
4043	file_saved=false
4044
4045	if [[ $archive_system = asterix ]]
4046	then
4047	do_stageout=true
4048	(( stageout_anz = 0 ))
4049	while [[ $do_stageout = true ]]
4050	do
4051	if [[ $files_for_pes = false ]]
4052	then
4053	stageout ${frelout[$i]} > STAGE_OUTPUT
4054	else
4055	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4056	fi
4057	cat STAGE_OUTPUT
4058	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4059	then
4060	file_saved=true
4061	do_stageout=false
4062	else
4063	if [[ $files_for_pes = false ]]
4064	then
4065	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4066	else
4067	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4068	fi
4069	(( stageout_anz = stageout_anz + 1 ))
4070	if (( stageout_anz == 10 ))
4071	then
4072	printf "\n +++ stoped after 10 unsuccessful tries!"
4073	archive_save=false
4074	do_stageout=false
4075	else
4076	printf "\n *** new try to store on archive after 15 min:"
4077	sleep 900
4078	fi
4079	fi
4080	done
4081	elif [[ $archive_system = DMF ]]
4082	then
4083	if [[ $files_for_pes = false ]]
4084	then
4085	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4086	locat=DMF
4087	exit
4088	else
4089	rm -rf $ARCHIVE/${frelout[$i]}
4090	cp -r ${frelout[$i]} $ARCHIVE
4091	fi
4092	file_saved=true
4093	elif [[ $archive_system = tivoli ]]
4094	then
4095	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4096	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4097	# GELEGT WERDEN
4098	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4099	chmod g+rx $tmp_data_catalog
4100	if [[ $files_for_pes = false ]]
4101	then
4102	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4103	else
4104	mkdir $tmp_data_catalog/${frelout[$i]}
4105	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4106	fi
4107
4108	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4109	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4110	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4111	if [[ $files_for_pes = false ]]
4112	then
4113	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4114	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4115	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4116	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4117	else
4118	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4119	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4120	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4121	fi
4122
4123	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4124	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4125	file_saved=true
4126
4127	elif [[ $archive_system = ut ]]
4128	then
4129	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4130	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4131	# GELEGT WERDEN
4132	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4133	chmod g+rx $tmp_data_catalog
4134	if [[ $files_for_pes = false ]]
4135	then
4136	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4137	else
4138	mkdir $tmp_data_catalog/${frelout[$i]}
4139	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4140	fi
4141
4142	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4143	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4144	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4145	if [[ $files_for_pes = false ]]
4146	then
4147	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4148	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4149	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4150	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4151	else
4152	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4153	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4154	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4155	fi
4156
4157	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4158	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4159	file_saved=true
4160
4161	else
4162	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4163	archive_save=false
4164	fi
4165	if [[ $file_saved = true ]]
4166	then
4167	if [[ $files_for_pes = false ]]
4168	then
4169	cat /dev/null > ${pathout[$i]}
4170	else
4171	mkdir -p ${pathout[$i]}
4172	fi
4173	fi
4174	fi
4175
4176	# APPEND AUF LOKALER MASCHINE
4177	if [[ "${actionout[$i]}" = "a" ]]
4178	then
4179	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4180	then
4181	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4182	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4183	else
4184	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4185	cat ${localout[$i]} >> ${pathout[$i]}
4186	fi
4187	fi
4188
4189	# KOPIEREN AUF LOKALER MASCHINE
4190	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4191	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4192	then
4193
4194	# KOPIEREN AUF EINPROZESSORMASCHINE
4195	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4196	then
4197	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4198	if [[ $link_local_output = true ]]
4199	then
4200	printf " using ln -f\n"
4201	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4202	fi
4203	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4204	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4205	then
4206	if [[ $link_local_output = true ]]
4207	then
4208	printf " ln failed, using cp...\n"
4209	fi
4210	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4211	fi
4212	else
4213	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4214	if [[ $link_local_output = true ]]
4215	then
4216	printf " using ln -f\n"
4217	ln -f ${localout[$i]} ${pathout[$i]}
4218	fi
4219	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4220	if [[ ! -f "${pathout[$i]}" ]]
4221	then
4222	if [[ $link_local_output = true ]]
4223	then
4224	printf " ln failed, using cp...\n"
4225	fi
4226	cp ${localout[$i]} ${pathout[$i]}
4227	fi
4228	fi
4229
4230	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4231	then
4232
4233	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4234	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4235	# WIRD DANN KOPIERT
4236	# PER MOVE UMBENANNT WERDEN
4237	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4238	if [[ $link_local_output = true ]]
4239	then
4240	printf " using ln -f\n"
4241	mkdir ${pathout[$i]}
4242	cd ${localout[$i]}
4243	for file in $(ls *)
4244	do
4245	ln -f $file ${pathout[$i]}
4246	done
4247	cd $TEMPDIR
4248	fi
4249	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4250	if [[ ! -f "${pathout[$i]}/_0000" ]]
4251	then
4252	if [[ $link_local_output = true ]]
4253	then
4254	printf " ln failed for .../_0000, using cp...\n"
4255	fi
4256	cp -r ${localout[$i]} ${pathout[$i]}
4257	fi
4258
4259	fi
4260	fi
4261	done
4262	if (( i != 0 ))
4263	then
4264	if [[ $transfer_problems = true ]]
4265	then
4266	printf "\n$striche\n *** OUTPUT-files saved"
4267	printf "\n +++ WARNING: some data transfers failed! \n"
4268	else
4269	printf "\n$striche\n *** all OUTPUT-files saved \n"
4270	fi
4271	fi
4272
4273
4274	# EVENTUELL FOLGEJOB STARTEN
4275	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4276	if [[ -f CONTINUE_RUN ]]
4277	then
4278
4279	if [[ $archive_save = true ]]
4280	then
4281
4282	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4283	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4284	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4285	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4286	# HANDEN
4287	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4288	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4289	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4290	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4291	then
4292	mc=`echo $mc \| sed 's/#/f/g'`
4293	fi
4294
4295
4296	# JOB STARTEN
4297	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4298	echo " $mc"
4299	printf "\n$striche\n"
4300	if [[ $localhost != $fromhost ]]
4301	then
4302
4303	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4304	then
4305	echo "*** ssh will be used to initiate restart-runs!"
4306	echo " return_addres=\"$return_addres\" "
4307	echo " return_username=\"$return_username\" "
4308	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4309	then
4310	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4311	else
4312	if [[ $localhost = ibmkisti ]]
4313	then
4314	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4315	else
4316	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4317	fi
4318	fi
4319	else
4320	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4321	locat=restart; exit
4322	fi
4323
4324	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4325	# DER AKTUELLE JOB ENDET
4326	if [[ $queue = special1q ]]
4327	then
4328	sleep 120
4329	else
4330	sleep 30
4331	fi
4332
4333	else
4334
4335	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4336	# RUFEN WERDEN, AUSSER AUF lcfimm
4337	cd $LOCAL_PWD
4338	if [[ $localhost = lcfimm ]]
4339	then
4340	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4341	else
4342	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4343	fi
4344	cd - > /dev/null
4345	fi
4346	printf "\n$striche\n *** restart-run initiated \n"
4347
4348
4349	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4350	# GEHOLT WORDEN SIND, LOESCHEN
4351	(( i = 0 ))
4352	while (( i < iin ))
4353	do
4354	(( i = i + 1 ))
4355	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4356	then
4357	rm -r $tmp_data_catalog/${frelin[$i]}
4358	fi
4359	done
4360
4361	else
4362
4363	printf "\n +++ no restart-run possible, since errors occured"
4364	printf "\n during the archive process"
4365	fi
4366
4367	fi
4368
4369
4370
4371	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4372	if [[ "$email_notification" != "none" ]]
4373	then
4374
4375	if [[ $localhost != $fromhost ]]
4376	then
4377	if [[ -f CONTINUE_RUN ]]
4378	then
4379	echo "PALM restart run necessary" > email_text
4380	echo "description header of actual run:" >> email_text
4381	cat CONTINUE_RUN >> email_text
4382	echo "mrun-command to restart:" >> email_text
4383	echo "$mc" >> email_text
4384	else
4385	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4386	fi
4387	mail $email_notification < email_text
4388	printf "\n *** email notification sent to \"$email_notification\" "
4389	fi
4390	fi
4391
4392
4393
4394	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4395	cd $HOME
4396	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4397
4398	else
4399
4400
4401	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4402	# CHENDE AKTIONEN DURCHGEFUEHRT
4403
4404	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4405	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4406	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4407	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4408	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4409	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4410	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4411	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4412	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4413	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4414	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4415	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4416	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4417	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4418	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4419	if [[ $use_openmp = true ]]
4420	then
4421	mrun_com=${mrun_com}" -O $threads_per_task"
4422	fi
4423	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4424	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4425	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4426	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4427	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4428	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4429	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4430	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4431	if [[ $do_remote = true ]]
4432	then
4433	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4434	fi
4435
4436
4437	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4438	jobfile=jobfile.$RANDOM
4439
4440
4441	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4442	echo "mkdir $TEMPDIR" >> $jobfile
4443	echo "cd $TEMPDIR" >> $jobfile
4444
4445
4446	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4447	if [[ $do_trace = true ]]
4448	then
4449	echo "set -x" >> $jobfile
4450	else
4451	echo "set +vx" >> $jobfile
4452	fi
4453
4454
4455	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4456	# DATEI FUER DEN JOB
4457	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4458	then
4459
4460	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4461	# KOPIEREN
4462	if [[ $restart_run != true ]]
4463	then
4464	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4465	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4466	fi
4467
4468	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4469	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4470	echo "set -x" >> $jobfile
4471	if [[ $host = $localhost ]]
4472	then
4473	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4474	else
4475	if [[ $host != ibmkisti ]]
4476	then
4477	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4478	else
4479	# on KISTI's IBM firewall is only opened on interactive node
4480	echo "localdir=\`pwd\`" >> $jobfile
4481	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4482	fi
4483	fi
4484	echo "export SOURCES_COMPLETE=true" >> $jobfile
4485
4486	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4487	# ARBEITSVERZEICHNIS VERSCHIEBEN
4488	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4489	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4490	echo "execute_mrun=true" >> $jobfile
4491	echo " " >> $jobfile
4492
4493	else
4494
4495	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4496	# SOWIE GEGEBENENFALLS DES MAKEFILES
4497	if [[ $do_compile = true ]]
4498	then
4499
4500	source_catalog=SOURCES_FOR_RUN_$fname
4501
4502	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4503	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4504	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4505	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4506	echo "export SOURCES_COMPLETE=true" >> $jobfile
4507	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4508
4509	for filename in $source_list
4510	do
4511	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4512	echo "cat > $filename << \"%END%\"" >> $jobfile
4513	cat $source_catalog/$filename >> $jobfile
4514	echo " " >> $jobfile
4515	echo "%END%" >> $jobfile
4516	echo " " >> $jobfile
4517	done
4518
4519	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4520	echo "cat > Makefile << \"%END%\"" >> $jobfile
4521	cat $source_catalog/Makefile >> $jobfile
4522	echo " " >> $jobfile
4523	echo "%END%" >> $jobfile
4524	echo " " >> $jobfile
4525
4526	echo "cd - > /dev/null" >> $jobfile
4527
4528	fi
4529
4530
4531	# ABSPEICHERN DER KONFIGURATIONSDATEI
4532	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4533	echo "cat > $config_file << \"%END%\"" >> $jobfile
4534	cat $config_file >> $jobfile
4535	echo "%END%" >> $jobfile
4536	echo " " >> $jobfile
4537
4538
4539	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4540	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4541	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4542	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4543	echo "%END%" >> $jobfile
4544	echo "chmod u+x $mrun_script_name" >> $jobfile
4545	echo "execute_mrun=true" >> $jobfile
4546	echo " " >> $jobfile
4547
4548	fi
4549
4550
4551	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4552	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4553	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4554	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4555	if [[ $do_remote = true ]]
4556	then
4557	(( i = 0 ))
4558	while (( i < iin ))
4559	do
4560	(( i = i + 1 ))
4561	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4562	if [[ "${transin[$i]}" = job ]]
4563	then
4564	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4565	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4566	echo " " >> $jobfile
4567	echo "%END%" >> $jobfile
4568	else
4569	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4570	fi
4571
4572	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4573	echo "if [[ \$? = 1 ]]" >> $jobfile
4574	echo "then" >> $jobfile
4575	echo " echo \" \" " >> $jobfile
4576	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4577	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4578	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4579	echo " execute_mrun=false" >> $jobfile
4580	echo "fi" >> $jobfile
4581	done
4582	fi
4583
4584	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4585	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4586	echo "LOCAL_PWD=$working_directory" >> $jobfile
4587	echo "export LOCAL_PWD" >> $jobfile
4588
4589	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4590	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4591	echo "export LOCAL_MRUN_PATH" >> $jobfile
4592
4593	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4594	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4595	then
4596	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4597	fi
4598
4599	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4600	echo "set -x" >> $jobfile
4601	echo "queue=$queue" >> $jobfile
4602	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4603
4604	echo 'ls -al; echo `pwd`' >> $jobfile
4605	echo "cd \$HOME" >> $jobfile
4606	echo "rm -rf $TEMPDIR" >> $jobfile
4607
4608
4609
4610
4611	# JOB PER SUBJOB STARTEN
4612	if [[ $silent = false ]]
4613	then
4614	printf "\n "
4615	else
4616	printf "\n\n"
4617	fi
4618
4619	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4620	rm -rf $jobfile
4621
4622
4623	fi # ENDE REMOTE-TEIL
4624
4625
4626
4627	# ENDE DER PROZEDUR

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