Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 74

Last change on this file since 74 was 74, checked in by raasch, 18 years ago
temporary change in mrun removed
Property svn:keywords set to `Rev`
File size: 149.0 KB

Line
1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 61 2007-03-12 05:42:06Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114
115
116
117
118	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
119
120	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
121	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
122	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
123
124	AddFilenames=""
125	additional_conditions=""
126	add_source_path=""
127	afname=""
128	archive_save=true
129	archive_system=none
130	compiler_name=""
131	cond1=""
132	cond2=""
133	config_file=.mrun.config
134	cpp_opts=""
135	cpumax=0
136	cpurest=0
137	delete_temporary_catalog=true
138	do_batch=false
139	do_compile=true
140	do_remote=false
141	do_stagein=true
142	do_stageout=true
143	do_trace=false
144	email_notification=""
145	exclude=""
146	executable=""
147	execution_error=false
148	filetransfer_protocol=""
149	fimm=false
150	fname=test
151	fromhost=""
152	host=""
153	host_file=""
154	hp=""
155	ignore_archive_error=false
156	input_list=""
157	interpreted_config_file=""
158	job_on_file=""
159	keep_data_from_previous_run=false
160	localhost_realname=$(hostname)
161	local_compile=false
162	locat=normal
163	mainprog=""
164	makefile=""
165	mc=$0
166	while [[ $(echo $mc \| grep -c "/") != 0 ]]
167	do
168	mc=`echo $mc \| cut -f2- -d"/"`
169	done
170	module_files=""
171	MODULE_OPTIONS=""
172	mrun_script_name=$mc
173	netcdf_support=false
174	node_usage=default
175	numprocs=""
176	OOPT=""
177	openmp=false
178	output_list=""
179	package_list=""
180	punkte="..........................................................."
181	queue=none
182	read_from_config=""
183	restart_run=false
184	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
185	if [[ $return_addres = 130.75.105.158 ]]
186	then
187	return_addres=172.20.25.41
188	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
189	fi
190	# if [[ $return_addres = 210.117.65.1 ]]
191	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
192	# then
193	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
194	# fi
195	return_password=""
196	return_username=$LOGNAME
197	remotecall=false
198	remote_username=""
199	run_mode=""
200	scirocco=false
201	store_on_archive_system=true
202	striche=" ----------------------------------------------------------------------------"
203	silent=false
204	source_list=""
205	source_path=SOURCE
206	tasks_per_node=""
207	threads_per_task=1
208	tmpcreate=false
209	tmp_data_catalog=""
210	transfer_problems=false
211	usern=$LOGNAME
212	use_makefile=""
213	working_directory=`pwd`
214	TOPT=""
215	XOPT=""
216	zeit=$( date \| cut -c 12-19 )
217
218	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
219	typeset -i cputime i ii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
220
221	typeset -R30 calltime
222	typeset -L20 spalte1
223	typeset -L40 spalte2
224	typeset -L60 spalte3
225	typeset -L35 string1=`date`
226	typeset -L12 string2=$usern
227	typeset -L12 string3=$localhost_realname
228	typeset -L12 string4
229	typeset -L12 string5
230	typeset -L30 version="MRUN 2.0 Rev$Rev: 74 $"
231
232
233
234	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
235	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
236
237	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
238	# EXPORTIERT WERDEN
239	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
240	export input_list memory numprocs output_list queue run_mode
241
242
243
244	# FEHLERBEHANDLUNG
245	# BEI EXIT:
246	trap 'rm -rf tmp_mrun
247	if [[ $locat != localhost ]]
248	then
249	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
250	# then
251	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
252	#MRUN-calls on $localhost
253	#
254	#date and time user localhost remotehost termination mrun-command
255	#--------------------------------------------------------------------------------------------------------------------
256	#%STATEND%
257	# chmod 666 ${mrun_path}/statistik/mrun_statistik
258	# fi
259	#
260	# # EINTRAG IN DIE STATISTIK-DATEI
261	# string4=$host
262	# string5=$locat
263	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
264	# then
265	# if [[ $do_batch = true ]]
266	# then
267	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
268	# else
269	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
270	# fi
271	# fi
272	echo " " > /dev/null
273	fi
274
275	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
276	then
277
278	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
279	(( i = 0 ))
280	while (( i < iec ))
281	do
282	(( i = i + 1 ))
283	printf "\n *** Execution of ERROR-command:\n"
284	printf " >>> ${err_command[$i]}\n"
285	eval ${err_command[$i]}
286	done
287	if [[ -n $interpreted_config_file ]] then
288	rm -rf $interpreted_config_file
289	fi
290	if [[ -n .mrun_environment ]] then
291	rm -rf .mrun_environment
292	fi
293	if [[ $tmpcreate = true ]]
294	then
295	printf "\n *** Contents of \"$TEMPDIR\":\n"
296	ls -al; cd
297	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
298	fi
299	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
300	then
301	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
302	fi
303	printf "\n\n+++ MRUN killed \n\n"
304	elif [[ $locat != control_c ]]
305	then
306	printf "\n\n --> all actions finished\n\n"
307	printf " Bye, bye $usern !!\n\n"
308	fi' exit
309
310
311	# BEI TERMINAL-BREAK:
312	trap 'rm -rf tmp_mrun
313	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
314	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
315	then
316	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
317	fi
318	printf "\n+++ MRUN killed by \"^C\" \n\n"
319	locat=control_c
320	exit
321	' 2
322
323
324	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
325	# BEEN SET
326	if [[ "$PALM_BIN" = "" ]]
327	then
328	printf "\n +++ environment variable PALM_BIN has not been set"
329	printf "\n please set it to the directory where the PALM scripts are located"
330	locat=palm_bin; exit
331	fi
332
333
334	# EVTL. NAMEN DES LOKALEN RECHNERS MIT UEBERGREIFENDEM NAMEN VERSEHEN
335	case $localhost_realname in
336	(atmos) localhost=lcide;;
337	(bora\|breva\|elephanta\|gallego\|gregale\|hababai\|irifi\|levanto\|maestro\|orkan\|ostria\|poniente\|quanero\|scirocco\|vorias) localhost=lcmuk;;
338	(breg-en0\|berni-en0) localhost=ibmb; archive_system=tivoli;;
339	(cs*) localhost=nech; archive_system=ut;;
340	(fimm.bccs.uib.no) localhost=lcmuk;;
341	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII; localhost=neck;;
342	(ground.yonsei.ac.kr) localhost=decalpha;;
343	(gfdl3.yonsei.ac.kr) localhost=decalpha;;
344	(gfdl5) localhost=ibmy;;
345	(hreg-en0\|hanni-en0) localhost=ibmh; archive_system=tivoli;;
346	(nobel*) localhost=ibms;;
347	(sun1\|sun2) localhost=unics;;
348	(tgg*) localhost=lctit;;
349	(*) printf "\n +++ Host \"$localhost_realname\" not admitted for mrun \n"
350	locat=localhost; exit;;
351	esac
352
353	[[ $localhost_realname = scirocco ]] && scirocco=true
354	[[ $localhost_realname = fimm.bccs.uib.no ]] && fimm=true
355
356
357
358	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
359	# FUER FOLGEJOBS BENOETIGT WIRD
360	while getopts :a:AbBc:Cd:D:f:Fh:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX: option
361	do
362	case $option in
363	(a) afname=$OPTARG;;
364	(A) store_on_archive_system=false; mc="$mc -A";;
365	(b) do_batch=true; mc="$mc -b";;
366	(B) delete_temporary_catalog=false; mc="$mc -B";;
367	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
368	(C) restart_run=true; mc="$mc -C";;
369	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
370	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
371	(f) filetransfer_protocol=$OPTARG; mc="$mc -f$OPTARG";;
372	(F) job_on_file="-D"; mc="$mc -F";;
373	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
374	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
375	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
376	(I) ignore_archive_error=true; mc="$mc -I";;
377	(k) keep_data_from_previous_run=true; mc="$mc -k";;
378	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
379	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
380	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
381	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
382	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
383	(O) use_openmp=true; mc="$mc -O";;
384	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
385	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
386	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
387	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
388	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
389	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
390	(S) read_from_config=false; mc="$mc -S";;
391	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
392	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
393	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
394	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
395	(v) silent=true; mc="$mc -v";;
396	(x) do_trace=true;set -x; mc="$mc -x";;
397	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
398	(\?) printf "\n +++ unknown option $OPTARG \n"
399	printf "\n --> type \"$0 ?\" for available options \n"
400	locat=parameter;exit;;
401	esac
402	done
403
404
405	# EVTL. POSITIONSPARAMETER EINLESEN
406	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
407	shift OPTIND-1
408
409
410	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
411	if [[ "$1" = "?" ]]
412	then
413	(printf "\n *** mrun can be called as follows:\n"
414	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
415	printf "\n Description of available options:\n"
416	printf "\n Option Description Default-Value"
417	printf "\n -a base name of input files equiv. -d"
418	printf "\n -A no archiving when using file-attribute fl"
419	printf "\n -b batch-job on local machine ---"
420	printf "\n -B do not delete temporary directory at end ---"
421	printf "\n -c configuration file .mrun.config"
422	printf "\n -d base name of files attached to program test"
423	printf "\n -D preprocessor(cpp)-directives \"\" "
424	printf "\n -f filetransfer protocol (ftp or scp) depending on -h"
425	printf "\n -F create remote job file only ---"
426	printf "\n -h execution host $localhost_realname"
427	printf "\n -i INPUT control list \"\" "
428	printf "\n -I archiving errors of previous batch-jobs"
429	printf "\n will be ignored"
430	printf "\n -k keep data from previous run"
431	printf "\n -K additional conditions for controling"
432	printf "\n usage of conditional code and"
433	printf "\n env-variables in configuration file \"\" "
434	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
435	printf "\n -M Makefile name Makefile"
436	printf "\n -n node usage (shared/not_shared) depending on -h"
437	printf "\n -o OUTPUT control list \"\" "
438	printf "\n -O use OpenMP ---"
439	printf "\n -p software package list \"\" "
440	printf "\n -q queue \"$queue\" "
441	printf "\n -r run control list (combines -i -o) \"\" "
442	printf "\n -s filenames of routines to be compiled \"\" "
443	printf "\n must end with .f, .f90, .F, or .c !"
444	printf "\n use \"..\" for more than one file and wildcards"
445	printf "\n -s TEST compiles all files with w-permit"
446	printf "\n -S config file interpreted by shellscript ---"
447	printf "\n -t allowed cpu-time in seconds (batch) 0"
448	printf "\n -T tasks per node depending on -h"
449	printf "\n -u username on remote machine \"\" "
450	printf "\n -v no prompt for confirmation ---"
451	printf "\n -x tracing of mrun for debug purposes ---"
452	printf "\n -X # of processors (on parallel machines) 1"
453	printf "\n "
454	printf "\n Possible values of positional parameter <modus>:"
455	printf "\n \"?\" - this outline \n\n") \| more
456	exit
457	elif [[ "$1" != "" ]]
458	then
459	printf "\n +++ positional parameter $1 unknown \n"
460	locat=parameter; exit
461	fi
462
463
464
465	# KURZE STARTMELDUNG
466	printf "\n*** $version "
467	printf "\n will be executed. Please wait ..."
468
469
470	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
471	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
472	[[ "$afname" = "" ]] && afname=$fname
473
474
475	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
476	if [[ "$run_mode" != "" ]]
477	then
478	input_list="$input_list $run_mode"
479	output_list="$output_list $run_mode"
480	fi
481
482
483	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
484	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
485	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
486	# STARTET)
487	if [[ "$fromhost" = "" ]]
488	then
489	fromhost=$localhost
490	fi
491
492
493	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
494	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
495	then
496	source_list=TEST
497	local_compile=true
498	host=$localhost
499	fi
500
501
502	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
503	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
504	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
505	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
506	if [[ -n $host && "$host" != $localhost ]]
507	then
508	do_batch=true
509	do_remote=true
510	case $host in
511	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lctit\|unics) true;;
512	(*) printf "\n"
513	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
514	printf "\n or NQS not available on execution host!"
515	locat=nqs; (( iec = 0 )); exit;;
516	esac
517	else
518	host=$localhost
519	fi
520
521
522	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
523	if [[ -n $additional_conditions ]]
524	then
525	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
526	cond1=`echo $additional_conditions \| cut -d" " -f1`
527	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
528	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
529	if [[ -n $dummy ]]
530	then
531	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
532	locat=options; exit
533	fi
534	fi
535
536
537	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
538	# ARCHIVIERUNG FEHLGESCHLAGEN IST
539	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
540	then
541	if [[ $ignore_archive_error = false ]]
542	then
543	printf "\n +++ data archiving of previous run failed"
544	printf "\n see directory \~/job_queue on remote machine"
545	locat=archive; exit
546	else
547	printf "\n +++ warning: data archiving in a previous run failed"
548	printf "\n MRUN continues, trying to get backup copy"
549	fi
550	fi
551
552
553	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
554	if [[ ! -f $config_file ]]
555	then
556	printf "\n\n +++ configuration file: "
557	printf "\n $config_file"
558	printf "\n does not exist"
559	locat=connect; exit
560	fi
561
562
563
564	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
565	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
566	if [[ "$read_from_config" = false ]]
567	then
568
569	[[ $silent = false ]] && printf "\n Reading the configuration file... "
570	while read zeile
571	do
572	[[ $silent = false ]] && printf "."
573
574
575	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
576	# ERSETZEN
577	eval zeile=\"$zeile\"
578
579
580	# INTERPRETATION DER ZEILE
581	if [[ "$(echo $zeile)" = "" ]]
582	then
583	# LEERZEILE, KEINE AKTION
584	continue
585
586	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
587	then
588
589	# ZEILE IST KOMMENTARZEILE
590	true
591
592	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
593	then
594
595	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
596	zeile=$(echo $zeile \| cut -c2-)
597	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
598	var=`echo $zeile \| cut -d" " -f1`
599	value=`echo $zeile \| cut -d" " -s -f2`
600	for_host=`echo $zeile \| cut -d" " -s -f3`
601	for_cond1=`echo $zeile \| cut -d" " -s -f4`
602	for_cond2=`echo $zeile \| cut -d" " -s -f5`
603
604	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
605	then
606
607	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
608	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
609	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
610
611
612	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
613	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
614	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
615	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
616	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
617	# KONFIGURATIONSDATEI
618	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
619	then
620	eval $var=\$value
621
622	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
623	if [[ $do_trace = true ]]
624	then
625	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
626	fi
627	fi
628
629	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
630	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
631	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
632	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
633	if [[ $var = host ]]
634	then
635	if [[ -n $host && "$host" != $localhost ]]
636	then
637	do_batch=true
638	do_remote=true
639	case $host in
640	(ibm\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
641	(*) printf "\n +++ no queueing system available on execution host \"$host\""
642	locat=nqs; exit;;
643	esac
644	else
645	host=$localhost
646	fi
647	fi
648
649	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
650	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
651	# DEN PROGRAMMEN BENOETIGT WERDEN
652	export $var
653	fi
654
655
656
657
658	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
659	then
660
661	# ZEILE DEFINIERT ERROR-KOMMANDO
662	(( iec = iec + 1 ))
663	zeile=$(echo $zeile \| cut -c4-)
664	err_command[$iec]="$zeile"
665
666	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
667	then
668
669	# ZEILE DEFINIERT INPUT-KOMMANDO
670	(( iic = iic + 1 ))
671	zeile=$(echo $zeile \| cut -c4-)
672	in_command[$iic]="$zeile"
673
674	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
675	then
676
677	# ZEILE DEFINIERT OUTPUT-KOMMANDO
678	(( ioc = ioc + 1 ))
679	zeile=$(echo $zeile \| cut -c4-)
680	out_command[$ioc]="$zeile"
681
682	else
683
684	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
685	# s2a: in/out - Feld
686	# s2b: loc - Feld (optional)
687	# s2c: tr/ar - Feld (optional)
688	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
689	s1=`echo $zeile \| cut -d" " -f1`
690	s2=`echo $zeile \| cut -d" " -s -f2`
691	s2a=$(echo $s2 \| cut -d":" -f1)
692	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
693	then
694	s2b=""
695	s2c=""
696	else
697	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
698	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
699	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
700	fi
701	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
702	s3=`echo $zeile \| cut -d" " -f3`
703	s4=`echo $zeile \| cut -d" " -s -f4`
704	s5=`echo $zeile \| cut -d" " -s -f5`
705	s6=`echo $zeile \| cut -d" " -s -f6`
706
707
708	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
709	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
710	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
711	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
712	# HANDEN SEIN MUSS (D.H. s2b = loc)
713	IFSALT="$IFS"; IFS="$IFS:"
714	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
715	then
716	found=false
717	for actual in $input_list
718	do
719	for formal in $s3
720	do
721	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
722	done
723	done
724	if [[ $found = true ]]
725	then
726	(( iin = iin + 1 ))
727	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
728	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
729	extin[$iin]=$s6
730	fi
731	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
732	then
733	found=false
734	for actual in $output_list
735	do
736	for formal in $s3
737	do
738	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
739	done
740	done
741	if [[ $found = true ]]
742	then
743	(( iout = iout + 1 ))
744	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
745	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
746	fi
747	elif [[ "$s2a" != in && "$s2a" != out ]]
748	then
749	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
750	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
751	locat=connect; exit
752	fi
753	IFS="$IFSALT"
754	fi
755	done < $config_file
756
757	else
758
759
760	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
761	[[ $silent = false ]] && printf "..."
762	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
763	export interpreted_config_file=.icf.$RANDOM
764
765	# case $localhost_realname in
766	# (caurus\|twister) interpret_config.hp;;
767	# (bora\|breva\|elephanta\|gallego\|gregale\|hababai\|maestro\|orkan\|ostria) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel_ifc/8.1/lib/; interpret_config_9.x;;
768	# (levanto\|vorias) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel/ifort/9.1.037/lib/; interpret_config_9.x_levanto;;
769	# (quanero) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel_fc_80/lib; interpret_config_9.x;;
770	# (*) interpret_config.x;;
771	# esac
772
773
774	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
775	# VERFUEGUNG STELLEN
776	cat > .mrun_environment << %%END%%
777	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
778	config_file = '$config_file', do_remote = '$do_remote',
779	do_trace = '$do_trace', host = '$host',
780	input_list = '$input_list', icf = '$interpreted_config_file',
781	localhost = '$localhost', output_list = '$output_list' /
782
783	%%END%%
784
785	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
786	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
787	mrun_memory=$memory
788	mrun_cpumax=$cpumax
789	mrun_numprocs=$numprocs
790
791	if [[ $localhost_realname = "gate" ]]
792	then
793	interpret_config_gate.x
794	else
795	interpret_config.x
796	fi
797	rm .mrun_environment
798
799
800	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
801	chmod u+x $interpreted_config_file
802	export PATH=$PATH:.
803	. $interpreted_config_file
804	rm $interpreted_config_file
805
806
807	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
808	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
809	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
810	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
811
812	fi
813
814
815	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
816	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
817	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
818	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
819	if [[ "$SOURCES_COMPLETE" = "" ]]
820	then
821
822	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
823	# VEREINBART WURDE
824	source_path=""
825	line=""
826	grep "%source_path" $config_file > tmp_mrun
827	while read line
828	do
829	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
830	then
831	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
832	then
833	global_source_path=`echo $line \| cut -d" " -f2`
834	fi
835	fi
836	done < tmp_mrun
837
838	line=""
839	found=false
840	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
841	while read line
842	do
843	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
844	then
845	if [[ $found = true ]]
846	then
847	printf "\n\n +++ more than one source path found in configuration file"
848	printf "\n for local host \"$localhost\" "
849	locat=source_path; exit
850	fi
851	source_path=`echo $line \| cut -d" " -f2`
852	found=true
853	fi
854	done < tmp_mrun
855	rm tmp_mrun
856
857	if [[ "$source_path" = "" ]]
858	then
859	if [[ "$global_source_path" != "" ]]
860	then
861	source_path=$global_source_path
862	else
863	printf "\n\n +++ no source path found in configuration file"
864	printf "\n for local host \"$localhost\" "
865	locat=source_path; exit
866	fi
867	fi
868	eval source_path=$source_path
869
870	if [[ ! -d $source_path ]]
871	then
872	printf "\n\n +++ source path \"$source_path\" on local host"
873	printf "\n \"$localhost\" does not exist"
874	locat=source_path; exit
875	fi
876
877	fi
878
879
880
881	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
882	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
883	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
884	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
885	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
886	if [[ -n $host && "$host" != $localhost ]]
887	then
888	do_batch=true
889	do_remote=true
890	case $host in
891	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
892	(*) printf "\n"
893	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
894	printf "\n or no queueing system available on execution host!"
895	locat=nqs; (( iec = 0 )); exit;;
896	esac
897	else
898	host=$localhost
899	fi
900
901
902	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
903	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
904	then
905
906	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
907	if [[ ! -n $numprocs ]]
908	then
909	printf "\n"
910	printf "\n +++ option \"-K parallel\" requires additional specification"
911	printf "\n of the number of processors to be used by"
912	printf "\n mrun-option \"-X\" or by environment-variable"
913	printf "\n \"numprocs\" in the configuration file"
914	locat=numprocs; (( iec = 0 )); exit
915	fi
916
917	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
918	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
919	# GESAMTPROZESSORANZAHL IST
920	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
921	then
922	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
923	(( ival = $tasks_per_node ))
924	(( pes = numprocs ))
925	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
926	# then
927	# (( pes = pes - 1 ))
928	# fi
929	(( ii = pes / ival ))
930	if (( pes - ii * ival > 0 ))
931	then
932	printf "\n"
933	printf "\n +++ tasks per node (option \"-T\") must be an integral"
934	printf "\n divisor of the total number of processors (option \"-X\")"
935	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
936	locat=tasks_per_node; (( iec = 0 )); exit
937	fi
938	fi
939
940	# IBMY HAT NUR EINEN KNOTEN
941	if [[ $host = ibmy ]]
942	then
943	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
944	then
945	printf "\n"
946	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
947	printf "\n total number of processors (option \"-X\")"
948	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
949	locat=tasks_per_node; (( iec = 0 )); exit
950	fi
951	fi
952
953	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
954	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
955	if [[ $use_openmp = true ]]
956	then
957	threads_per_task=$tasks_per_node
958	tasks_per_node=1
959	fi
960	OOPT="-O $threads_per_task"
961	TOPT="-T $tasks_per_node"
962
963	# GESAMTZAHL DER KNOTEN BESTIMMEN
964	if [[ "$tasks_per_node" != "" ]]
965	then
966	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
967	fi
968
969	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
970	# SETZEN
971	if [[ $node_usage = default ]]
972	then
973	if [[ $host = ibms ]]
974	then
975	node_usage=shared
976	else
977	node_usage=not_shared
978	fi
979	fi
980	if [[ $node_usage != shared && $node_usage != not_shared ]]
981	then
982	printf "\n"
983	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
984	printf "\n \"shared\" or \"not_shared\""
985	locat=tasks_per_node; (( iec = 0 )); exit
986	fi
987
988	fi
989
990	# PRUEFEN, OB HOSTFILE EXISTIERT
991	if [[ -n $hostfile ]]
992	then
993	if [[ ! -f $hostfile ]]
994	then
995	printf "\n"
996	printf "\n +++ hostfile \"$hostfile\" does not exist"
997	locat=hostfile; exit
998	fi
999	fi
1000
1001	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1002	if [[ $host = ibmy && $do_remote = false ]]
1003	then
1004	if [[ ! -f $HOME/.rhosts ]]
1005	then
1006	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1007	printf "\n\n *** file:"
1008	printf "\n $HOME/.rhosts"
1009	printf "\n was created\n"
1010	fi
1011	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1012	then
1013	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1014	printf "\n\n *** file:"
1015	printf "\n $HOME/.rhosts"
1016	printf "\n was extended by the name of the current host\n"
1017	fi
1018	fi
1019
1020	# DEFAULT-DATEITRANSFER-PROTOKOLL FESTLEGEN
1021	if [[ "$filetransfer_protocol" = "" ]]
1022	then
1023	case $host in
1024	(nech\|neck\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit) filetransfer_protocol=scp;;
1025	(*) filetransfer_protocol=ftp;;
1026	esac
1027	fi
1028
1029	# PRUEFEN, OB ZULAESSIGES DATEITRANSFER-PROTOKOLL GEWAEHLT WURDE
1030	if [[ "$filetransfer_protocol" != ftp && "$filetransfer_protocol" != scp ]]
1031	then
1032	printf "\n"
1033	printf "\n +++ illegal value \"$filetransfer_protocol\" for Option -f"
1034	printf "\n only \"ftp\" or \"scp\" are allowed"
1035	locat=options; exit
1036	fi
1037
1038
1039	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1040	if [[ $queue = none ]]
1041	then
1042	case $host in
1043	(ibmb) if [[ $node_usage = shared ]]
1044	then
1045	queue=cshare
1046	else
1047	queue=csolo
1048	fi;;
1049	(ibmh) if [[ $node_usage = shared ]]
1050	then
1051	queue=cshare
1052	else
1053	queue=csolo
1054	fi;;
1055	(ibmy) queue=parallel;;
1056	(lctit) queue=default;;
1057	(nech) queue=none;;
1058	(neck) queue=P;;
1059	(unics) queue=unics;;
1060	esac
1061	fi
1062
1063
1064	# EVTL. NETCDF-UNTERSTUETZUNG SETZEN
1065	case $host in
1066	(decalpha) netcdf_support=true
1067	netcdf_path=/usr/local/netcdf-3.5.1;;
1068	(ibmb\|ibmh) netcdf_support=true
1069	netcdf_path=/aws/dataformats/netcdf-3.6.0-p1/64-32;;
1070	(ibms) netcdf_support=true
1071	netcdf_path=/applic/lib/NETCDF64;;
1072	(ibmy) netcdf_support=true
1073	netcdf_path=/usr1/users/raasch/pub/netcdf-3.6.0-p1;;
1074	(lcmuk) netcdf_support=true
1075	if [[ $scirocco = true ]]
1076	then
1077	netcdf_path=/opt/netcdf/3.6.2-beta4
1078	elif [[ $fimm = true ]]
1079	then
1080	netcdf_path=/local/netcdf
1081	else
1082	netcdf_path=/muksoft/packages/netcdf/linux
1083	fi;;
1084	(lctit) netcdf_support=true
1085	netcdf_path=/home2/usr5/mkanda/netcdf-3.6.2;;
1086	(nech) netcdf_support=true
1087	netcdf_path=/pool/SX-6/netcdf/netcdf-3.6.0-p1;;
1088	(neck) netcdf_support=true
1089	netcdf_path=/home/DSRC/NC/tatuyama/pub/netcdf-3.6.0-p1;;
1090	esac
1091
1092
1093	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1094	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1095	# ERMITTELN
1096	(( i = 0 ))
1097	while (( i < iin ))
1098	do
1099	(( i = i + 1 ))
1100	(( maxcycle = 0 ))
1101
1102	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1103	if [[ "${actionin[$i]}" = di ]]
1104	then
1105	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1106	# REM-MASCHINE AUSWERTEN
1107	eval filename=${pathin[$i]}/${endin[$i]}
1108	else
1109	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1110	# REM-MASCHINE AUSWERTEN
1111	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1112	fi
1113
1114	# PRUEFEN AUF VORHANDENSEIN
1115	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1116	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1117	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1118	then
1119	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1120	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1121	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1122	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1123	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1124	if [[ "${transin[$i]}" != "locopt" ]]
1125	then
1126	printf "\n\n +++ INPUT-file: "
1127	if [[ "${extin[$i]}" = "" ]]
1128	then
1129	printf "\n $filename"
1130	else
1131	printf "\n $filename.${extin[$i]}"
1132	fi
1133	printf "\n does not exist\n"
1134	locat=input; exit
1135	else
1136	transin[$i]="unavailable"
1137	fi
1138	else
1139
1140	# ZYKLUSNUMMER FESTSTELLEN
1141	ls -1 -d $filename > filelist 2>/dev/null
1142	ls -1 -d $filename.* >> filelist 2>/dev/null
1143	while read zeile
1144	do
1145	cycle=$(print $zeile \| cut -f2 -d".")
1146	if [[ "$cycle" = "$zeile" ]]
1147	then
1148	(( icycle = 0 ))
1149	elif [[ "$cycle" = "${extin[$i]}" ]]
1150	then
1151	(( icycle = 0 ))
1152	else
1153	(( icycle = $cycle ))
1154	fi
1155	if (( icycle > maxcycle ))
1156	then
1157	(( maxcycle = icycle ))
1158	file_to_be_used=$zeile
1159	fi
1160	done <filelist
1161	rm filelist
1162
1163	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1164	if (( maxcycle > 0 ))
1165	then
1166	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1167	then
1168	filename=${filename}.$maxcycle.${extin[$i]}
1169	else
1170	filename=${filename}.$maxcycle
1171	fi
1172	else
1173	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1174	then
1175	filename=${filename}.${extin[$i]}
1176	fi
1177	fi
1178
1179	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1180	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1181	absnamein[$i]=$filename
1182	if (( maxcycle > 0 ))
1183	then
1184	if [[ "${actionin[$i]}" = di ]]
1185	then
1186	frelin[$i]=${endin[$i]}.$maxcycle
1187	else
1188	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1189	fi
1190	else
1191	if [[ "${actionin[$i]}" = di ]]
1192	then
1193	frelin[$i]=${endin[$i]}
1194	else
1195	frelin[$i]=${afname}${endin[$i]}
1196	fi
1197	fi
1198
1199	fi
1200	done
1201
1202
1203	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1204	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1205	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1206	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1207	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1208	(( i = 0 ))
1209	while (( i < iout ))
1210	do
1211	(( i = i + 1 ))
1212	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1213	then
1214	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1215	then
1216	actionout[$i]=""
1217	elif [[ "${actionout[$i]}" = tra ]]
1218	then
1219	actionout[$i]=a
1220	fi
1221	(( maxcycle = 0 ))
1222	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1223	eval catalogname=${pathout[$i]}
1224	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1225	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1226	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1227	then
1228
1229	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1230	if cat /dev/null > $filename
1231	then
1232	rm $filename
1233	else
1234
1235	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1236	if [[ ! -d $catalogname ]]
1237	then
1238	if mkdir -p $catalogname
1239	then
1240	printf "\n\n *** directory:"
1241	printf "\n $catalogname"
1242	printf "\n was created\n"
1243	else
1244	printf "\n\n +++ OUTPUT-file:"
1245	printf "\n $filename"
1246	printf "\n cannot be created, because directory does not exist"
1247	printf "\n and cannot be created either"
1248	printf "\n"
1249	locat=output ; exit
1250	fi 2>/dev/null
1251	else
1252	printf "\n\n +++ OUTPUT-file:"
1253	printf "\n $filename"
1254	printf "\n cannot be created, although directory exists"
1255	printf "\n"
1256	locat=output ; exit
1257	fi
1258	fi 2>/dev/null
1259	else
1260
1261	# ZYKLUSNUMMER FESTSTELLEN
1262	ls -1 -d $filename > filelist 2>/dev/null
1263	ls -1 -d $filename.* >> filelist 2>/dev/null
1264	while read zeile
1265	do
1266	cycle=$(print $zeile \| cut -f2 -d".")
1267	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1268	then
1269	(( icycle = 1 ))
1270	else
1271	(( icycle = $cycle + 1 ))
1272	fi
1273	if (( icycle > maxcycle ))
1274	then
1275	(( maxcycle = icycle ))
1276	fi
1277	done <filelist
1278	rm filelist
1279	fi
1280
1281	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1282	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1283	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1284	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1285	if [[ "${actionout[$i]}" != a ]]
1286	then
1287	if (( maxcycle > 0 ))
1288	then
1289	filename=${filename}.$maxcycle
1290	if cat /dev/null > $filename
1291	then
1292	rm $filename
1293	else
1294	printf "\n +++ OUTPUT-file:"
1295	printf "\n $filename"
1296	printf "\n cannot be created"
1297	locat=output ; exit
1298	fi
1299	fi
1300	else
1301	(( maxcycle = maxcycle - 1 ))
1302	if (( maxcycle > 0 ))
1303	then
1304	filename=${filename}.$maxcycle
1305	fi
1306	fi
1307
1308	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1309	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1310	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1311	pathout[$i]=$filename
1312	if (( maxcycle > 0 ))
1313	then
1314	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1315	else
1316	frelout[$i]=${fname}${endout[$i]}
1317	fi
1318
1319	fi
1320	done
1321
1322
1323	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1324	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1325	# UEBERSETZT ZU WERDEN)
1326	if [[ "$mainprog" = "" && "$executable" = "" ]]
1327	then
1328	printf "\n +++ neither main program nor executable defined"
1329	locat=source; exit
1330	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1331	then
1332	printf "\n +++ main program as well as executable defined"
1333	locat=source; exit
1334	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1335	then
1336	do_compile=false
1337	fi
1338
1339
1340	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1341	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1342	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1343	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1344	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1345	then
1346
1347	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1348	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1349
1350	if [[ $restart_run != true ]]
1351	then
1352	rm -rf SOURCES_FOR_RUN_$fname
1353	mkdir SOURCES_FOR_RUN_$fname
1354	fi
1355
1356
1357	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1358	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1359	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1360	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1361	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1362	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1363	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1364	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1365	# GESAMMELT
1366	if [[ "$source_list" = WRITE_PERMIT ]]
1367	then
1368
1369	source_list=""
1370	cd $source_path
1371
1372
1373	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1374	Names=$(ls -1 *.f90 2>&1)
1375	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1376	Names=$(ls -1 *.F90 2>&1)
1377	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1378	Names=$(ls -1 *.F 2>&1)
1379	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1380	Names=$(ls -1 *.f 2>&1)
1381	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1382	Names=$(ls -1 *.c 2>&1)
1383	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1384
1385
1386	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1387	for dateiname in $Filenames
1388	do
1389	if [[ -w $dateiname ]]
1390	then
1391	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1392	then
1393	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1394	source_list=$source_list"$dateiname "
1395	fi
1396	fi
1397	done
1398
1399	cd - > /dev/null
1400
1401
1402	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1403	then
1404
1405	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1406	source_list=""
1407	cd $source_path
1408
1409
1410	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1411	if [[ ! -d .svn ]]
1412	then
1413	printf "\n\n +++ source directory"
1414	printf "\n \"$source_path\" "
1415	printf "\n is not under control of \"subversion\"."
1416	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1417	fi
1418
1419
1420	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1421	Filenames=""
1422	svn status > tmp_mrun
1423	while read line
1424	do
1425	firstc=`echo $line \| cut -c1`
1426	if [[ $firstc = M \|\| $firstc = "?" ]]
1427	then
1428	Name=`echo "$line" \| cut -c8-`
1429	extension=`echo $Name \| cut -d. -f2`
1430	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1431	then
1432	Filenames="$Filenames "$Name
1433	fi
1434	fi
1435	done < tmp_mrun
1436
1437
1438	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1439	for dateiname in $Filenames
1440	do
1441	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1442	source_list=$source_list"$dateiname "
1443	done
1444
1445	cd - > /dev/null
1446
1447
1448	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1449	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1450	# VORHANDEN
1451	elif [[ "$source_list" != "" && $restart_run != true ]]
1452	then
1453
1454	cd $source_path
1455
1456	for filename in $source_list
1457	do
1458
1459	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1460	if [[ $(print $filename \| grep -c "/") != 0 ]]
1461	then
1462	printf "\n +++ source code file: $filename"
1463	printf "\n must not contain (\"/\") "
1464	locat=source; exit
1465	fi
1466
1467	if [[ ! -f $filename ]]
1468	then
1469	printf "\n +++ source code file: $filename"
1470	printf "\n does not exist"
1471	locat=source; exit
1472	else
1473	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1474	fi
1475
1476	done
1477
1478	cd - > /dev/null
1479
1480	fi
1481
1482
1483	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1484	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1485	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1486	if [[ $restart_run != true ]]
1487	then
1488
1489	if [[ ! -f "$source_path/$mainprog" ]]
1490	then
1491	printf "\n\n +++ main program: $mainprog"
1492	printf "\n does not exist in source directory"
1493	printf "\n \"$source_path\"\n"
1494	locat=source; exit
1495	else
1496	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1497	then
1498	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1499	source_list=${mainprog}" $source_list"
1500	fi
1501	fi
1502	fi
1503
1504
1505	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1506	if [[ $restart_run != true && "$add_source_path" != "" ]]
1507	then
1508
1509	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1510	if [[ ! -d $add_source_path ]]
1511	then
1512	printf "\n\n +++ WARNING: additional source code directory"
1513	printf "\n \"$add_source_path\" "
1514	printf "\n does not exist or is not a directory."
1515	printf "\n No source code will be used from this directory!\n"
1516	add_source_path=""
1517	sleep 3
1518	else
1519
1520	cd $add_source_path
1521
1522	Names=$(ls -1 *.f90 2>&1)
1523	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1524	Names=$(ls -1 *.F90 2>&1)
1525	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1526	Names=$(ls -1 *.F 2>&1)
1527	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1528	Names=$(ls -1 *.f 2>&1)
1529	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1530	Names=$(ls -1 *.c 2>&1)
1531	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1532
1533	cd - > /dev/null
1534	cd SOURCES_FOR_RUN_$fname
1535
1536	for dateiname in $AddFilenames
1537	do
1538	if [[ -f $dateiname ]]
1539	then
1540	printf "\n +++ source code file \"$dateiname\" found in additional"
1541	printf "\n source code directory \"$add_source_path\" "
1542	printf "\n as well as in directory \"$source_path\"."
1543	locat=source; exit
1544	fi
1545
1546	cp $add_source_path/$dateiname .
1547	source_list="$source_list $dateiname"
1548
1549	# Default User-Interface von der Liste entfernen, falls Datei
1550	# ein User-Interface enthaelt
1551	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1552	then
1553	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1554	then
1555	rm -rf user_interface.f90
1556	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1557	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1558	printf "\n since a user-interface is found in file"
1559	printf "\n \"$add_source_path/$dateiname\" \n"
1560	sleep 3
1561	else
1562	printf "\n\n *** user-interface file \"$dateiname\" "
1563	printf "\n added to the files to be translated \n"
1564	sleep 3
1565	fi
1566	fi
1567	done
1568
1569	cd - > /dev/null
1570	fi
1571	fi
1572
1573
1574	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1575	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1576	if [[ $restart_run != true && -n $package_list ]]
1577	then
1578
1579	cd $source_path
1580
1581	for package in $package_list
1582	do
1583
1584	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1585
1586	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1587	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1588	# LIEFERT
1589	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1590
1591
1592	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1593	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1594	for source_list_name in $package_source_list
1595	do
1596	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1597	then
1598
1599	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1600	ending=`echo $source_list_name \| cut -f2 -d.`
1601	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1602	then
1603	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1604	source_list="$source_list $source_list_name"
1605	fi
1606	fi
1607	done
1608	done
1609
1610	cd - > /dev/null
1611	fi
1612
1613
1614	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1615	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1616	if [[ "$use_makefile" = true && "$restart_run" != true ]]
1617	then
1618	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1619	if [[ ! -f $makefile ]]
1620	then
1621	printf "\n +++ file \"$makefile\" does not exist"
1622	printf "\n provide this file or set \"use_makefile=false\" in configuration file\n"
1623	locat=make; exit
1624	else
1625	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1626	fi
1627	fi
1628
1629	fi # do_compile=true
1630
1631
1632	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1633	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1634	if [[ $do_compile = true ]]
1635	then
1636
1637	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1638	# ZUSAMMENSETZEN
1639	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1640	then
1641	PPOPTS=-Dibm=ibm
1642	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1643	then
1644	PPOPTS=-Dnec
1645	else
1646	PPOPTS=-D$localhost
1647	fi
1648	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1649	then
1650	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1=$cond1"
1651	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2=$cond2"
1652	if [[ $netcdf_support = true ]]
1653	then
1654	PPOPTS="$PPOPTS -Dnetcdf=netcdf"
1655	[[ $localhost != ibms ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit=netcdf_64bit"
1656	fi
1657	if [[ $localhost = ibmy ]]
1658	then
1659	PPOPTS="$PPOPTS -Dibmy_special=ibmy_special"
1660	fi
1661	else
1662	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1"
1663	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2"
1664	if [[ $netcdf_support = true ]]
1665	then
1666	PPOPTS="$PPOPTS -Dnetcdf"
1667	[[ $localhost != decalpha && $localhost != lctit ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit"
1668	fi
1669	fi
1670	if [[ -n $package_list ]]
1671	then
1672	for package in $package_list
1673	do
1674	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1675	then
1676	if [[ $package != "dvrp_graphics+1PE" ]]
1677	then
1678	PPOPTS="$PPOPTS -D$package=$package"
1679	else
1680	PPOPTS="$PPOPTS -Ddvrp_graphics"
1681	export use_seperate_pe_for_dvrp_output=true
1682	fi
1683	else
1684	if [[ $package != "dvrp_graphics+1PE" ]]
1685	then
1686	PPOPTS="$PPOPTS -D$package"
1687	else
1688	PPOPTS="$PPOPTS -Ddvrp_graphics"
1689	export use_seperate_pe_for_dvrp_output=true
1690	fi
1691	fi
1692	done
1693	fi
1694	if [[ -n $cpp_opts ]]
1695	then
1696	for popts in $cpp_opts
1697	do
1698	PPOPTS="$PPOPTS -D$popts"
1699	done
1700	fi
1701
1702	# -D ARGUMENTEN EINEN DOPPELTEN UNTERSTRICH VORANSTELLEN
1703	PPOPTS=`echo " $PPOPTS" \| sed 's/ -D/ -D__/g'`
1704
1705	# OPTION ZUM EINSCHALTEN DES PRAEPROZESSORS HINZUFUEGEN
1706	if [[ $host = decalpha ]]
1707	then
1708	C_PPOPTS="-cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION $PPOPTS"
1709	elif [[ $(echo $host \| cut -c1-3) = ibm ]]
1710	then
1711	# blanks in PPOPTS muessen durch "," ersetzt werden
1712	PPOPTS=`echo $PPOPTS \| sed 's/ -/,-/g'`
1713	C_PPOPTS="-qsuffix=cpp=f90 -WF,-DMPI_REAL=MPI_DOUBLE_PRECISION,$PPOPTS"
1714	elif [[ $host = lcmuk ]]
1715	then
1716	C_PPOPTS="$PPOPTS -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1717	elif [[ $host = lctit ]]
1718	then
1719	C_PPOPTS="$PPOPTS -Mpreprocess -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1720	elif [[ $(echo $host \| cut -c1-3) = nec ]]
1721	then
1722	C_PPOPTS="-Ep -DMPI_REAL=MPI_REAL8 -DMPI_2REAL=MPI_2REAL8 -DSCFFT=dzfft -DCSFFT=zdfft $PPOPTS"
1723	else
1724	C_PPOPTS="$PPOPTS"
1725	fi
1726
1727	else
1728
1729
1730	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1731	if [[ $do_remote = false ]]
1732	then
1733	if [[ ! -f $executable ]]
1734	then
1735	printf "\n +++ executable file: $executable"
1736	printf "\n does not exist"
1737	locat=executable; exit
1738	fi
1739	fi
1740	fi
1741
1742
1743	# JOBMODUS FESTSTELLEN
1744	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1745	then
1746	jobmo=BATCH
1747	else
1748	jobmo=INTERACTIVE
1749	fi
1750
1751
1752	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1753	# DURCH BENUTZER ANDERWEITIG VEREINBART
1754	if [[ "$compiler_name" = "" ]]
1755	then
1756	case $localhost in
1757	(unics) compiler_name=f77;;
1758	(lcmuk) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1759	then
1760	compiler_name=mpif90
1761	else
1762	compiler_name=ifc
1763	fi;;
1764	(lctit) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1765	then
1766	compiler_name=mpif90
1767	echo ">>> compiler=mpif90"
1768	else
1769	compiler_name=pgf95
1770	echo ">>> compiler=pgf95"
1771	fi;;
1772	(nech) compiler_name=sxmpif90;;
1773	(decalpha) compiler_name=f95;;
1774	(ibm\|ibmb\|ibmh\|ibms\|ibmy) compiler_name=mpxlf95_r;;
1775	(*) printf "\n +++ unknown host name: $localhost \n";
1776	locat=localhost; exit;;
1777	esac
1778	fi
1779
1780
1781	# COMPILER AUF NECK UEBERSCHREIBEN
1782	[[ $localhost = neck ]] && compiler_name=mpif90
1783
1784
1785
1786	# PRAEPROZESSOR-PFAD BESTIMMEN
1787	case $localhost in
1788	(decalpha\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|unics) praeproc=cpp;;
1789	esac
1790
1791
1792	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1793	kennung=$RANDOM
1794	if [[ "$tmp_user_catalog" = "" ]]
1795	then
1796	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1797	then
1798	tmp_user_catalog=$TMPDIR
1799	elif [[ $localhost = nech ]]
1800	then
1801	tmp_user_catalog=$WRKSHR
1802	else
1803	tmp_user_catalog=/tmp
1804	fi
1805	fi
1806	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1807
1808
1809	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1810	# BESTIMMEN
1811	if [[ "$tmp_data_catalog" = "" ]]
1812	then
1813	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1814	then
1815	tmp_data_catalog=$WORK/mrun_restart_data
1816	elif [[ $localhost = nech ]]
1817	then
1818	tmp_data_catalog=$WRKSHR/mrun_restart_data
1819	else
1820	tmp_data_catalog=/tmp/mrun_restart_data
1821	fi
1822	fi
1823
1824
1825	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1826	# ERSETZEN
1827	if [[ $do_remote = false && $do_compile = true ]]
1828	then
1829	eval fopts=\"$fopts\"
1830	eval lopts=\"$lopts\"
1831	fi
1832
1833
1834
1835	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1836	FOPTS="$fopts"
1837	LOPTS="$lopts"
1838	ROPTS="$ropts"
1839	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lctit ) && -n $numprocs ]]
1840	then
1841	XOPT="-X $numprocs"
1842	fi
1843
1844
1845	# BEI VERWENDUNG VON DVRP-SOFTWARE MUSS ENTSPECHENDE GRAFIK-BIBLIOTHEK
1846	# MIT EINGEBUNDEN WERDEN
1847	if [[ -n $package_list ]]
1848	then
1849	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1850	then
1851
1852	# DVRP-GRAFIK GIBT ES NUR AUF DER IBM AM HLRN, AUF NECH/NECK UND
1853	# DEM NOTEBOOK SCIROCCO
1854	if [[ $host != ibmh && $host != nech && $host != neck && $host != lcmuk && "$local_compile" != true ]]
1855	then
1856	printf "\n"
1857	printf "\n +++ option -p with package \"dvrp_graphics\" only allowed on nech and ibmh"
1858	locat=parameter; exit
1859	fi
1860	if [[ $host = ibmh ]]
1861	then
1862	if [[ $cond1 = debug \|\| $cond2 = debug ]]
1863	then
1864	FOPTS="-I/home/h/hzazchmi/lib/debug $FOPTS"
1865	LOPTS="$LOPTS -L/home/h/hzazchmi/lib/debug -lDVRP2 -lftp"
1866	else
1867	FOPTS="-I/home/h/nikevita/lib_stable/optimize $FOPTS"
1868	LOPTS="$LOPTS -L/home/h/nikevita/lib_stable/optimize -lDVRP2 -lftp"
1869	fi
1870	elif [[ $host = nech ]]
1871	then
1872	FOPTS="-I/import/ds9b/ipf2/b/b323014/lib/optimize $FOPTS"
1873	LOPTS="$LOPTS -L/import/ds9b/ipf2/b/b323014/lib/optimize -lDVRP2 -lftp"
1874	elif [[ $host = neck ]]
1875	then
1876	FOPTS="-I/home/DSRC/NC/tatuyama/pub/dvrp $FOPTS"
1877	LOPTS="$LOPTS -L/home/DSRC/NC/tatuyama/pub/dvrp -lDVRP2 -lftp"
1878	elif [[ $host = lcmuk ]]
1879	then
1880	FOPTS="-I/usr/local/lib/dvrp/optimize $FOPTS"
1881	LOPTS="$LOPTS -L/usr/local/lib/dvrp/optimize -lDVRP2 -lftp"
1882	fi
1883	fi
1884	fi
1885
1886
1887	# EVTL. EINBINDEN DER NETCDF-BIBLIOTHEK
1888	if [[ $netcdf_support = true ]]
1889	then
1890	case $host in
1891	(decalpha) FOPTS="-I${netcdf_path}/include $FOPTS"
1892	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1893	(ibmb\|ibmh) FOPTS="-I ${netcdf_path}/include-64 $FOPTS"
1894	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1895	(ibms) FOPTS="-I /applic/netcdf64/src/f90 $FOPTS"
1896	LOPTS="$LOPTS -L${netcdf_path} -lnetcdf";;
1897	(ibmy) FOPTS="-I ${netcdf_path}/include $FOPTS"
1898	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1899	(lcmuk\|nech\|neck) FOPTS="-I ${netcdf_path}/include $FOPTS"
1900	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1901	(lctit) FOPTS="-I ${netcdf_path}/include $FOPTS"
1902	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1903
1904	esac
1905	fi
1906
1907	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1908	# GRAMM BENOETIGT
1909	done=false
1910	while [[ $done = false ]]
1911	do
1912	cputime=$cpumax
1913	if (( $cputime == 0 ))
1914	then
1915	printf "\n +++ cpu-time is undefined"
1916	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1917	printf "\n >>> "
1918	read cputime 1>/dev/null 2>&1
1919	else
1920	done=true
1921	fi
1922	cpumax=$cputime
1923	done
1924
1925	(( minuten = cputime / 60 ))
1926	(( sekunden = cputime - minuten * 60 ))
1927
1928
1929	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1930	if [[ $do_batch = true ]]
1931	then
1932	done=false
1933	while [[ $done = false ]]
1934	do
1935	if (( memory == 0 ))
1936	then
1937	printf "\n +++ memory demand is undefined"
1938	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1939	printf "\n >>> "
1940	read memory 1>/dev/null 2>&1
1941	else
1942	done=true
1943	fi
1944	done
1945	fi
1946
1947
1948	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1949	if [[ $do_remote = true && -z $remote_username ]]
1950	then
1951	while [[ -z $remote_username ]]
1952	do
1953	printf "\n +++ username on remote host \"$host\" is undefined"
1954	printf "\n >>> Please type username:"
1955	printf "\n >>> "
1956	read remote_username
1957	done
1958	mc="$mc -u$remote_username"
1959	fi
1960
1961	###########################################################################
1962	# HEADER-AUSGABE
1963	###########################################################################
1964
1965
1966	calltime=$(date)
1967	printf "\n"
1968	# [[ $silent = false ]] && clear
1969	printf "#--------------------------------------------------------------# \n"
1970	printf "\| $version$calltime \| \n"
1971	printf "\| \| \n"
1972	spalte1="called on:"; spalte2=$localhost_realname
1973	printf "\| $spalte1$spalte2 \| \n"
1974	if [[ $local_compile = false ]]
1975	then
1976	if [[ $do_remote = true ]]
1977	then
1978	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1979	else
1980	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1981	fi
1982	else
1983	spalte1="compiling test only!"; spalte2=""
1984	fi
1985	printf "\| $spalte1$spalte2 \| \n"
1986	if [[ -n $numprocs ]]
1987	then
1988	spalte1="number of PEs:"; spalte2=$numprocs
1989	printf "\| $spalte1$spalte2 \| \n"
1990	fi
1991	if [[ -n $tasks_per_node ]]
1992	then
1993	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1994	printf "\| $spalte1$spalte2 \| \n"
1995	fi
1996	if [[ $threads_per_task != 1 ]]
1997	then
1998	spalte1="threads per task:"; spalte2="$threads_per_task"
1999	printf "\| $spalte1$spalte2 \| \n"
2000	fi
2001	printf "\| \| \n"
2002	if [[ $do_compile = true ]]
2003	then
2004	spalte1=cpp-directives:; spalte2=$C_PPOPTS
2005	printf "\| $spalte1$spalte2 \| \n"
2006	zeile=$(echo "$C_PPOPTS" \| cut -c41-)
2007	while [[ "$zeile" != "" ]]
2008	do
2009	spalte1=""
2010	spalte2=$zeile
2011	printf "\| $spalte1$spalte2 \| \n"
2012	zeile=$(echo "$zeile" \| cut -c41-)
2013	done
2014
2015	spalte1=compiler-options:; spalte2="$FOPTS $MODULE_OPTIONS"
2016	printf "\| $spalte1$spalte2 \| \n"
2017	zeile=$(echo "$FOPTS $MODULE_OPTIONS" \| cut -c41-)
2018	while [[ "$zeile" != "" ]]
2019	do
2020	spalte1=""
2021	spalte2=$zeile
2022	printf "\| $spalte1$spalte2 \| \n"
2023	zeile=$(echo "$zeile" \| cut -c41-)
2024	done
2025
2026	spalte1=linker-options:; spalte2=$LOPTS
2027	printf "\| $spalte1$spalte2 \| \n"
2028	zeile=$(echo "$LOPTS" \| cut -c41-)
2029	while [[ "$zeile" != "" ]]
2030	do
2031	spalte1=""
2032	spalte2=$zeile
2033	printf "\| $spalte1$spalte2 \| \n"
2034	zeile=$(echo "$zeile" \| cut -c41-)
2035	done
2036
2037	spalte1="main program":; spalte2=$mainprog
2038	printf "\| $spalte1$spalte2 \| \n"
2039	if [[ "$use_makefile" = true ]]
2040	then
2041	spalte1="using \"make\" for com"; spalte2="piling and linking"
2042	printf "\| $spalte1$spalte2 \| \n"
2043	fi
2044	# if [[ $vtk_graphics = true ]]
2045	# then
2046	# spalte1=""; spalte2="wird in C++ - Programm eingebunden (vtk)"
2047	# printf "\| $spalte1$spalte2 \| \n"
2048	# fi
2049	else
2050	spalte1=executable:; spalte2=$executable
2051	printf "\| $spalte1$spalte2 \| \n"
2052	fi
2053	printf "\| \| \n"
2054	spalte1="base name of files":; spalte2=$fname
2055	printf "\| $spalte1$spalte2 \| \n"
2056	if [[ $fname != $afname ]]
2057	then
2058	spalte1="base name of input files":; spalte2=$afname
2059	printf "\| $spalte1$spalte2 \| \n"
2060	fi
2061	spalte1="INPUT control list":; spalte2=$input_list
2062	printf "\| $spalte1$spalte2 \| \n"
2063	spalte1="OUTPUT control list":; spalte2=$output_list
2064	printf "\| $spalte1$spalte2 \| \n"
2065
2066	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2067	then
2068	spalte1="memory demand / PE":; spalte2="$memory MB"
2069	printf "\| $spalte1$spalte2 \| \n"
2070	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2071	printf "\| $spalte1$spalte2 \| \n"
2072	fi
2073
2074	if [[ $do_compile = true ]]
2075	then
2076	printf "\| \| \n"
2077	printf "\| Files to be compiled: \| \n"
2078	zeile=$source_list
2079	while [[ "$zeile" != "" ]]
2080	do
2081	spalte3=$zeile
2082	printf "\| $spalte3 \| \n"
2083	zeile=$(echo "$zeile" \| cut -c61-)
2084	done
2085	fi
2086	printf "#--------------------------------------------------------------#"
2087
2088
2089
2090	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2091	if [[ $do_trace = true ]]
2092	then
2093	(( i = 0 ))
2094	while (( i < iin ))
2095	do
2096	(( i = i + 1 ))
2097	if (( i == 1 ))
2098	then
2099	printf "\n\n >>> INPUT-file assignments:\n"
2100	fi
2101	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2102	done
2103	(( i = 0 ))
2104	while (( i < iout ))
2105	do
2106	(( i = i + 1 ))
2107	if (( i == 1 ))
2108	then
2109	printf "\n\n >>> OUTPUT-file assignments:\n"
2110	fi
2111	printf "\n ${localout[$i]} : ${pathout[$i]}"
2112	done
2113	(( i = 0 ))
2114	while (( i < iic ))
2115	do
2116	(( i = i + 1 ))
2117	if (( i == 1 ))
2118	then
2119	printf "\n\n >>> INPUT-commands:\n"
2120	fi
2121	printf "\n ${in_command[$i]}"
2122	done
2123	(( i = 0 ))
2124	while (( i < ioc ))
2125	do
2126	(( i = i + 1 ))
2127	if (( i == 1 ))
2128	then
2129	printf "\n\n >>> OUTPUT-commands:\n"
2130	fi
2131	printf "\n ${out_command[$i]}"
2132	done
2133	fi
2134
2135
2136	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2137	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2138	then
2139	antwort=dummy
2140	printf "\n\n"
2141	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2142	do
2143	printf " >>> everything o.k. (y/n) ? "
2144	read antwort
2145	done
2146	if [[ $antwort = n \|\| $antwort = N ]]
2147	then
2148	locat=user_abort; (( iec = 0 )); exit
2149	fi
2150	if [[ $do_batch = true ]]
2151	then
2152	printf " >>> batch-job will be created and submitted"
2153	else
2154	if [[ $local_compile = false ]]
2155	then
2156	printf " >>> MRUN will now continue to execute on this machine"
2157	else
2158	printf " >>> a test compilation will now be carried out on this machine"
2159	fi
2160	fi
2161	fi
2162
2163
2164
2165
2166	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2167	# CHENDE AKTIONEN DURCHGEFUEHRT
2168	if [[ $do_batch = false ]]
2169	then
2170
2171
2172	# TEMPORAEREN KATALOG ERZEUGEN
2173	mkdir -p $TEMPDIR
2174	chmod go+rx $TEMPDIR
2175	tmpcreate=true
2176
2177
2178	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2179	# TEMPORAERES VERZEICHNIS KOPIEREN
2180	if [[ $do_compile = true ]]
2181	then
2182
2183	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2184	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2185	if [[ $localhost = nech ]]
2186	then
2187	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2188	if mkdir -p $TEMPDIR_COMPILE
2189	then
2190	printf "\n *** \"$TEMPDIR_COMPILE\" "
2191	printf "\n is generated as temporary directory for cross compiling\n"
2192	else
2193	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2194	printf "\n needed for cross compilation failed"
2195	locat=compile
2196	exit
2197	fi
2198	else
2199	TEMPDIR_COMPILE=$TEMPDIR
2200	fi
2201
2202	if [[ "$use_makefile" = true ]]
2203	then
2204
2205	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2206	line=""
2207	grep "%depository_path" $config_file > tmp_mrun
2208	while read line
2209	do
2210	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2211	then
2212	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2213	then
2214	global_depository_path=`echo $line \| cut -d" " -s -f2`
2215	fi
2216	fi
2217	done < tmp_mrun
2218
2219	line=""
2220	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2221	while read line
2222	do
2223	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2224	then
2225	local_depository_path=`echo $line \| cut -d" " -s -f2`
2226	fi
2227	done < tmp_mrun
2228
2229	if [[ "$local_depository_path" = "" ]]
2230	then
2231	if [[ "$global_depository_path" != "" ]]
2232	then
2233	local_depository_path=$global_depository_path
2234	else
2235	printf "\n\n +++ no depository path found in configuration file"
2236	printf "\n for local host \"$localhost\" "
2237	printf "\n please set \"\%depository_path\" in configuration file\n"
2238	locat=config_file; exit
2239	fi
2240	fi
2241	eval local_depository_path=$local_depository_path
2242
2243	basename=`print $mainprog \| cut -f1 -d"."`
2244	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2245	if [[ ! -f $make_depository ]]
2246	then
2247	printf "\n"
2248	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2249	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2250	else
2251	cp $make_depository $TEMPDIR_COMPILE
2252	cd $TEMPDIR_COMPILE
2253	tar -xf $make_depository > /dev/null 2>&1
2254	cd - > /dev/null
2255	fi
2256
2257	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2258
2259	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2260	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2261	# MAKEFILE EINTRAGEN
2262	cd $TEMPDIR_COMPILE
2263	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2264	if [[ "$interface_file" != "" ]]
2265	then
2266	interface_file=`echo $interface_file \| cut -d"." -f1`
2267	mv Makefile Makefile_old
2268	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2269	fi
2270	cd - > /dev/null
2271	fi
2272	else
2273	cp $executable ${TEMPDIR}/a.out
2274	fi
2275
2276
2277	# WECHSEL IN TEMPORAEREN KATALOG
2278	cd $TEMPDIR
2279	printf "\n *** changed to temporary directory: $TEMPDIR"
2280
2281
2282	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2283	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2284	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2285	# ERMITTELN
2286	(( i = 0 ))
2287	while (( i < iout ))
2288	do
2289	(( i = i + 1 ))
2290	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2291	then
2292	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2293	else
2294	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2295	fi
2296	done
2297
2298
2299	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2300	if [[ $do_compile = true ]]
2301	then
2302
2303
2304	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2305	if [[ "$use_makefile" = true ]]
2306	then
2307	printf "\n\n\n *** compilation starts \n$striche\n"
2308	printf " *** compilation with make using following options:\n"
2309	printf " compilername: $compiler_name\n"
2310	printf " options: $FOPTS\n"
2311	printf " preprocessor-directives: $C_PPOPTS \n"
2312	printf " linker-options: $LOPTS \n"
2313	printf " source code files: $source_list \n"
2314
2315	if [[ $localhost = nech ]]
2316	then
2317	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$C_PPOPTS\" F90FLAGS=\"$FOPTS\" LDFLAGS=\"$LOPTS\" "
2318	cp $TEMPDIR_COMPILE/a.out .
2319	[[ $? != 0 ]] && compile_error=true
2320	rm -rf $TEMPDIR_COMPILE
2321	else
2322	make -f Makefile PROG=a.out F90=$compiler_name COPT="$C_PPOPTS" F90FLAGS="$FOPTS" LDFLAGS="$LOPTS"
2323	fi
2324
2325	# UEBERSETZUNG "VON HAND" (OHNE MAKE)
2326	else
2327
2328
2329	# UEBERSETZUNG DER QUELLTEXT-DATEIEN UND DES HAUPTPROGRAMMS
2330	# $CPPOPTS FUER CPP-PRAEPROZESSOR WURDEN OBEN BESTIMMT
2331	printf "\n\n\n *** compilation starts \n$striche\n"
2332
2333
2334	# VORWEG EVTL. UEBERSETZUNG VON PROGRAMMTEILEN MIT SPEZIELLEN
2335	# COMPILERN UND/ODER COMPILEROPTIONEN. DIESE WERDEN BEI DER SPAETEREN
2336	# EIGENTLICHEN UEBERSETZUNG ALS OBJECT-FILES EINGEBUNDEN
2337	new_source_list=""
2338	for filename in $source_list
2339	do
2340
2341	basename=`print $filename \| cut -f1 -d"."`
2342
2343	# EVTL. SPEZIELLEN COMPILER FUER UP BESTIMMEN
2344	comp_var=$(eval echo \$comp_$basename) # \$ liefert evtl. fuer source alternativ vereinbarten Compiler
2345	comp_opt_var=$(eval echo \$$basename) # \$$ liefert evtl. fuer source vereinbarte Compiler-Environment-Variable
2346
2347	if [[ "$comp_var" = "" && "$comp_opt_var" = "" ]]
2348	then
2349	new_source_list="$new_source_list "$filename
2350	else
2351
2352	if [[ "$comp_var" = "" ]]
2353	then
2354	SPECIAL_COMPILER=$compiler_name
2355	else
2356	SPECIAL_COMPILER=$comp_var
2357	fi
2358
2359	if [[ "$comp_opt_var" = "" ]]
2360	then
2361	SPECIAL_FOPTS=$FOPTS
2362	else
2363	SPECIAL_FOPTS="$parallel_options $(eval echo \$$comp_opt_var)"
2364	fi
2365
2366	printf " *** compiling of $filename with special compiler call: $SPECIAL_COMPILER $CPPOPTS -c $SPECIAL_FOPTS \n"
2367	$SPECIAL_COMPILER $C_PPOPTS -c $SPECIAL_FOPTS $MODULE_OPTIONS $filename
2368	if [[ $? != 0 ]]
2369	then
2370	printf "\n +++ compiling error occured"
2371	locat=compile
2372	exit
2373	fi
2374	new_source_list="$new_source_list "${basename}.o
2375	fi
2376	done
2377	source_list="$new_source_list"
2378
2379
2380	# EIGENTLICHE UEBERSETZUNG MIT DEN NORMALEN OPTIONEN
2381	printf " *** compilation with standard options: $compiler_name $FOPTS $MODULE_OPTIONS \n"
2382	printf " preprocessor-directives: $C_PPOPTS \n"
2383	printf " linker-options: $LOPTS \n"
2384	printf " source code files: $source_list \n"
2385
2386	$compiler_name $C_PPOPTS $FOPTS $MODULE_OPTIONS $LOPTS $source_list
2387
2388	fi
2389	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2390	then
2391	printf "\n +++ error occured while compiling or linking"
2392	locat=compile
2393	exit
2394	else
2395	printf "$striche\n *** compilation finished \n"
2396	fi
2397	fi
2398
2399
2400	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2401	if [[ $local_compile = true ]]
2402	then
2403	cd $HOME
2404	rm -rf $TEMPDIR
2405	locat=local_compile; exit
2406	fi
2407
2408
2409	# BEREITSTELLEN DER INPUT-DATEIEN
2410	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2411	(( i = 0 ))
2412	while (( i < iin ))
2413	do
2414	(( i = i + 1 ))
2415	if (( i == 1 ))
2416	then
2417	printf "\n\n *** providing INPUT-files:\n$striche"
2418	fi
2419
2420
2421	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2422	if [[ "${transin[$i]}" = unavailable ]]
2423	then
2424	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2425	then
2426	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2427	printf "\n is not available!"
2428	else
2429	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2430	printf "\n is not available!"
2431	fi
2432	continue
2433	fi
2434
2435	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2436	files_for_pes=false; datentyp=file
2437	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2438	then
2439	files_for_pes=true; datentyp=directory
2440	actionin[$i]=""
2441	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2442	then
2443	actionin[$i]=""
2444	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2445	then
2446	files_for_pes=true; datentyp=directory
2447	actionin[$i]="ar"
2448	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2449	then
2450	actionin[$i]="ar"
2451	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2452	then
2453	files_for_pes=true; datentyp=directory
2454	actionin[$i]="fl"
2455	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2456	then
2457	actionin[$i]="fl"
2458	fi
2459
2460	if [[ $files_for_pes = true ]]
2461	then
2462	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2463	else
2464	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2465	fi
2466
2467	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2468	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2469	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2470	# SERVER ZU HOLEN
2471	if [[ "${actionin[$i]}" = fl ]]
2472	then
2473	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2474	if [[ $files_for_pes = false ]]
2475	then
2476	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2477	then
2478	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2479	got_tmp[$i]=true
2480	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2481	then
2482	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2483	printf "\n *** trying to use backup copy in \"$WORK\" "
2484	cp $WORK/${frelin[$i]} ${localin[$i]}
2485	else
2486	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2487	printf "\n or \"$tmp_data_catalog\" does not exist!"
2488	printf "\n *** trying to get copy from archive"
2489	actionin[$i]=ar
2490	fi
2491	else
2492	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2493	then
2494	mkdir ${localin[$i]}
2495	ln $tmp_data_catalog/${frelin[$i]}/* ${localin[$i]}
2496	got_tmp[$i]=true
2497	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2498	then
2499	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2500	printf "\n *** trying to use backup copy in \"$WORK\" "
2501	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2502	else
2503	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2504	printf "\n or \"$tmp_data_catalog\" does not exist!"
2505	printf "\n *** trying to get copy from archive"
2506	actionin[$i]=ar
2507	fi
2508	fi
2509	fi
2510
2511
2512	# DATEI LIEGT AUF ARCHIV-SERVER
2513	if [[ "${actionin[$i]}" = ar ]]
2514	then
2515
2516	if [[ $files_for_pes = false ]]
2517	then
2518	printf "\n file will be restored from archive-system ($archive_system)!"
2519	else
2520	printf "\n directory will be restored from archive-system ($archive_system)!"
2521	fi
2522
2523	file_restored=false
2524
2525	if [[ $archive_system = asterix ]]
2526	then
2527	do_stagein=true
2528	(( stagein_anz = 0 ))
2529	while [[ $do_stagein = true ]]
2530	do
2531	if [[ $files_for_pes = false ]]
2532	then
2533	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2534	else
2535	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2536	fi
2537	cat STAGEIN_OUTPUT
2538	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2539	then
2540	file_restored=true
2541	do_stagein=false
2542	else
2543	(( stagein_anz = stagein_anz + 1 ))
2544	if (( stagein_anz == 10 ))
2545	then
2546	printf "\n +++ stagein stoped after 10 tries"
2547	locat=stage
2548	exit
2549	fi
2550	printf "\n +++ restoring from archive failed, trying again:"
2551	sleep 900
2552	fi
2553	done
2554	elif [[ $archive_system = DMF ]]
2555	then
2556	if [[ $files_for_pes = false ]]
2557	then
2558	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2559	locat=DMF
2560	exit
2561	else
2562	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2563	cp -r $ARCHIVE/${frelin[$i]} $PWD
2564	file_restored=true
2565	fi
2566	elif [[ $archive_system = tivoli ]]
2567	then
2568	if [[ $files_for_pes = false ]]
2569	then
2570	if [[ $localhost = ibmh ]]
2571	then
2572	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2573	else
2574	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2575	fi
2576	else
2577	(( inode = 0 ))
2578	while (( inode < nodes ))
2579	do
2580	if [[ $localhost = ibmh ]]
2581	then
2582	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2583	else
2584	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2585	fi
2586	(( inode = inode + 1 ))
2587	done
2588	fi
2589	file_restored=true
2590	elif [[ $archive_system = ut ]]
2591	then
2592	if [[ $files_for_pes = false ]]
2593	then
2594	cp $UT/${frelin[$i]} .
2595	else
2596	(( inode = 0 ))
2597	while (( inode < nodes ))
2598	do
2599	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2600	(( inode = inode + 1 ))
2601	done
2602	fi
2603	file_restored=true
2604	else
2605	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2606	locat=rearchive
2607	exit
2608	fi
2609
2610	if [[ $file_restored = true ]]
2611	then
2612
2613	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2614	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2615	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2616	if [[ $files_for_pes = false ]]
2617	then
2618	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2619	else
2620	mkdir $tmp_data_catalog/${frelin[$i]}
2621	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2622	fi
2623	got_tmp[$i]=true
2624
2625	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2626	mv ${frelin[$i]} ${localin[$i]}
2627
2628	fi
2629	fi
2630
2631
2632	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2633	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2634	then
2635
2636	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2637	then
2638
2639	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2640	printf "\n file will be provided for $numprocs processors"
2641	mkdir ${localin[$i]}
2642	ival=$numprocs
2643	(( ii = 0 ))
2644	while (( ii <= ival-1 ))
2645	do
2646	if (( ii < 10 ))
2647	then
2648	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2649	elif (( ii < 100 ))
2650	then
2651	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2652	elif (( ii < 1000 ))
2653	then
2654	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2655	else
2656	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2657	fi
2658	(( ii = ii + 1 ))
2659	done
2660
2661	else
2662
2663	if [[ $files_for_pes = true ]]
2664	then
2665
2666	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2667	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2668	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2669	# PER MOVE UMBENANNT WERDEN
2670	printf "\n providing $numprocs files for the respective processors"
2671	mkdir ${localin[$i]}
2672	cp -r ${absnamein[$i]}/* ${localin[$i]}
2673
2674	else
2675	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2676	cp ${absnamein[$i]} ${localin[$i]}
2677	fi
2678	fi
2679	fi
2680
2681	done
2682	if (( i != 0 ))
2683	then
2684	printf "\n$striche\n *** all INPUT-files provided \n"
2685	fi
2686
2687
2688	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2689	# LESEN VON PALM)
2690	cat > ENVPAR << %%END%%
2691	&envpar run_identifier = '$fname', host = '$localhost',
2692	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2693	maximum_cpu_time_allowed = ${cpumax}. /
2694
2695	%%END%%
2696
2697
2698	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2699	(( i = 0 ))
2700	while (( i < iic ))
2701	do
2702	(( i = i + 1 ))
2703	if (( i == 1 ))
2704	then
2705	printf "\n\n *** execution of INPUT-commands:\n$striche"
2706	fi
2707	printf "\n >>> ${in_command[$i]}"
2708	eval ${in_command[$i]}
2709	if (( i == iic ))
2710	then
2711	printf "\n$striche\n"
2712	fi
2713	done
2714
2715
2716	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2717	cpurest=${cpumax}.
2718
2719
2720	# PROGRAMMSTART
2721	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2722	PATH=$PATH:$TEMPDIR
2723
2724	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2725	then
2726	if [[ "$ENVIRONMENT" = BATCH ]]
2727	then
2728	printf "\n +++ debug is allowed in interactive mode only"
2729	locat=debug
2730	exit
2731	fi
2732	if [[ $localhost = decalpha ]]
2733	then
2734	dxladebug a.out
2735	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2736	then
2737
2738	# SETUP THE IBM MPI ENVIRONMENT
2739	export MP_SHARED_MEMORY=yes
2740	export AIXTHREADS_SCOPE=S
2741	export OMP_NUM_THREADS=$threads_per_task
2742	export AUTHSTATE=files
2743	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2744
2745	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2746	export MP_ADAPTER_USE=shared
2747	export MP_CPU_USE=multiple
2748	export MP_TIMEOUT=1200
2749
2750	unset MP_TASK_AFFINITY
2751
2752	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2753	#(( ii = 1 ))
2754	#while (( ii <= $numprocs ))
2755	#do
2756	# echo $localhost_realname >> hostfile
2757	# (( ii = ii + 1 ))
2758	#done
2759	#export MP_HOSTFILE=hostfile
2760
2761	if [[ "$LOADLBATCH" = yes ]]
2762	then
2763	totalview poe a.out $ROPTS
2764	else
2765	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2766	export TVDSVRLAUNCHCMD=ssh
2767	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2768	fi
2769	else
2770	printf "\n +++ no debug available on \"$localhost\" "
2771	printf "\n or not implemented in mrun so far"
2772	locat=debug
2773	exit
2774	fi
2775	else
2776	if [[ -n $numprocs ]]
2777	then
2778
2779	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2780	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2781	then
2782	# SETUP THE IBM MPI ENVIRONMENT
2783	export MP_SHARED_MEMORY=yes
2784	export AIXTHREAD_SCOPE=S
2785	export OMP_NUM_THREADS=$threads_per_task
2786	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2787	export AUTHSTATE=files
2788	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2789	# export MP_PRINTENV=yes
2790
2791	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2792	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2793	export MP_WAIT_MODE=poll
2794	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2795	# export MP_EAGER_LIMIT=65535
2796
2797	# # TESTWEISE FUER TURBOMPI (JAN 05)
2798	# export MPJ_MTAB=128
2799	# export MPJ_ALLTOALL=1
2800	# export MPJ_ALLTOALLV=1
2801
2802	if [[ "$LOADLBATCH" = yes ]]
2803	then
2804	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2805	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2806	then
2807	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS > aout_output 2>&1
2808	else
2809	poe ./a.out $ROPTS > aout_output 2>&1
2810	fi
2811	else
2812	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2813	then
2814	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS > aout_output 2>&1
2815	elif [[ $localhost = ibmy ]]
2816	then
2817	if [[ -f $hostfile ]]
2818	then
2819	cp $hostfile hostfile
2820	else
2821	(( ii = 1 ))
2822	while (( ii <= $numprocs ))
2823	do
2824	echo $localhost_realname >> hostfile
2825	(( ii = ii + 1 ))
2826	done
2827	fi
2828	export MP_HOSTFILE=hostfile
2829	./a.out -procs $tasks_per_node $ROPTS > aout_output 2>&1
2830	else
2831	if [[ "$host_file" = "" ]]
2832	then
2833	printf "\n +++ no hostfile given in configuration file"
2834	locat=config_file
2835	exit
2836	else
2837	eval host_file=$host_file
2838	fi
2839	export MP_HOSTFILE=$host_file
2840	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS > aout_output 2>&1
2841	fi
2842	fi
2843	elif [[ $host = nech \|\| $host = neck ]]
2844	then
2845	(( ii = nodes ))
2846	if [[ $ii = 1 ]]
2847	then
2848	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2849	export MPIPROGINF=YES
2850	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2851	echo "*** execution on single node with mpirun"
2852	mpirun -np $numprocs ./a.out $ROPTS > aout_output 2>&1
2853	else
2854	(( i = 0 ))
2855	while (( i < ii ))
2856	do
2857	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2858	(( i = i + 1 ))
2859	done
2860
2861	echo "#!/bin/sh" > mpi_exec_shell
2862	echo " " >> mpi_exec_shell
2863	echo "set -u" >> mpi_exec_shell
2864	echo "F_ERRCNT=0" >> mpi_exec_shell
2865	echo "MPIPROGINV=YES" >> mpi_exec_shell
2866	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2867	echo "cpurest=$cpurest" >> mpi_exec_shell
2868	echo "fname=$fname" >> mpi_exec_shell
2869	echo "localhost=$localhost" >> mpi_exec_shell
2870	echo "return_addres=$return_addres" >> mpi_exec_shell
2871	echo "return_username=$return_username" >> mpi_exec_shell
2872	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2873	echo "write_binary=$write_binary" >> mpi_exec_shell
2874	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2875	echo " " >> mpi_exec_shell
2876	echo "export F_ERRCNT" >> mpi_exec_shell
2877	echo "export MPIPROGINV" >> mpi_exec_shell
2878	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2879	echo "export cpurest" >> mpi_exec_shell
2880	echo "export fname" >> mpi_exec_shell
2881	echo "export localhost" >> mpi_exec_shell
2882	echo "export return_addres" >> mpi_exec_shell
2883	echo "export return_username" >> mpi_exec_shell
2884	echo "export tasks_per_node" >> mpi_exec_shell
2885	echo "export write_binary" >> mpi_exec_shell
2886	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2887	echo " " >> mpi_exec_shell
2888	echo "exec ./a.out > aout_output 2>&1" >> mpi_exec_shell
2889
2890	chmod u+x mpi_exec_shell
2891	export MPIPROGINF=YES
2892	mpirun -f multinode_config &
2893	wait
2894
2895	fi
2896	elif [[ $host = lcmuk ]]
2897	then
2898
2899	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2900	# DOES NOT EXIST
2901	if [[ -f $hostfile ]]
2902	then
2903	cp $hostfile hostfile
2904	else
2905	(( ii = 1 ))
2906	while (( ii <= $numprocs / $threads_per_task ))
2907	do
2908	echo $localhost_realname >> hostfile
2909	(( ii = ii + 1 ))
2910	done
2911	fi
2912	(( ii = $numprocs / $threads_per_task ))
2913	eval zeile=\"`head -n $ii hostfile`\"
2914	printf "\n *** running on: $zeile"
2915	export OMP_NUM_THREADS=$threads_per_task
2916	if [[ $threads_per_task != 1 ]]
2917	then
2918	printf "\n threads per task: $threads_per_task"
2919	fi
2920	printf "\n\n"
2921	if [[ $scirocco = true ]]
2922	then
2923	mpiexec -machinefile hostfile -n $ii a.out $ROPTS > aout_output 2>&1
2924	else
2925	mpirun -machinefile hostfile -np $ii a.out $ROPTS > aout_output 2>&1
2926	fi
2927	elif [[ $host = decalpha ]]
2928	then
2929	dmpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2930	elif [[ $host = lctit ]]
2931	then
2932	export runfile=runfile.$kennung
2933
2934	echo "cd $PWD" > $runfile
2935	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2936	echo "export cpurest=$cpurest" >> $runfile
2937	echo "export fname=$fname" >> $runfile
2938	echo "export localhost=$localhost" >> $runfile
2939	echo "export return_addres=$return_addres" >> $runfile
2940	echo "export return_username=$return_username" >> $runfile
2941	echo "export tasks_per_node=$tasks_per_node" >> $runfile
2942	echo "export write_binary=$write_binary" >> $runfile
2943	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
2944	echo "./a.out" >> $runfile
2945	chmod u+x $runfile
2946
2947	if [[ "$QUEUE" = interactive ]]
2948	then
2949	mpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2950	else
2951	n1ge -fore -mpi $numprocs -q $queue a.out $ROPTS > aout_output 2>&1
2952	fi
2953
2954	rm $runfile
2955	else
2956	mpprun -n $numprocs a.out $ROPTS > aout_output 2>&1
2957	fi
2958	[[ $? != 0 ]] && execution_error=true
2959
2960
2961	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
2962	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
2963	then
2964	apprentice
2965	fi
2966	else
2967	a.out $ROPTS > aout_output 2>&1
2968	fi
2969	fi
2970	if [[ $? != 0 \|\| $execution_error = true ]]
2971	then
2972
2973	# ABBRUCH BEI LAUFZEITFEHLER
2974	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2975	printf "\n +++ runtime error occured"
2976	locat=execution
2977	exit
2978	else
2979	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2980	printf "\n$striche\n *** execution finished \n"
2981	fi
2982
2983
2984
2985	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
2986	(( i = 0 ))
2987	while (( i < ioc ))
2988	do
2989	(( i = i + 1 ))
2990	if (( i == 1 ))
2991	then
2992	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
2993	fi
2994	printf "\n >>> ${out_command[$i]}"
2995	eval ${out_command[$i]}
2996	if (( i == ioc ))
2997	then
2998	printf "\n$striche\n"
2999	fi
3000	done
3001
3002
3003	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3004	if [[ $do_trace = true ]]
3005	then
3006	printf "\n\n"
3007	ls -al
3008	fi
3009
3010
3011
3012	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3013	(( i = 0 ))
3014	while (( i < iout ))
3015	do
3016	(( i = i + 1 ))
3017	if (( i == 1 ))
3018	then
3019	printf "\n\n *** saving OUTPUT-files:\n$striche"
3020	fi
3021
3022	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3023	files_for_pes=false; filetyp=file
3024	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3025	then
3026	files_for_pes=true; filetyp=directory
3027	actionout[$i]=""
3028	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3029	then
3030	actionout[$i]=""
3031	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3032	then
3033	files_for_pes=true; filetyp=directory
3034	actionout[$i]="ar"
3035	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3036	then
3037	actionout[$i]="ar"
3038	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3039	then
3040	files_for_pes=true; filetyp=directory
3041	actionout[$i]="fl"
3042	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3043	then
3044	actionout[$i]="fl"
3045	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3046	then
3047	files_for_pes=true; filetyp=directory
3048	actionout[$i]="tr"
3049	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3050	then
3051	actionout[$i]="tr"
3052	fi
3053
3054	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3055	then
3056	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3057	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3058	then
3059	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3060	else
3061
3062
3063	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3064	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3065	# REMOTE-RECHNUNGEN
3066	if [[ "${actionout[$i]}" = tr ]]
3067	then
3068	if [[ $localhost != $fromhost ]]
3069	then
3070	if [[ $files_for_pes = false ]]
3071	then
3072	cps=""
3073	cst=""
3074	else
3075	cps=-c
3076	cst="/"
3077	fi
3078	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3079	then
3080
3081	# TRANSFER IN EIGENSTAENDIGEM JOB
3082	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3083	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3084	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3085	if [[ $files_for_pes = false ]]
3086	then
3087	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3088	else
3089	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3090	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3091	fi
3092
3093	echo "set -x" > transfer_${localout[$i]}
3094	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3095	if [[ $filetransfer_protocol = ftp ]]
3096	then
3097	if [[ $files_for_pes = true ]]
3098	then
3099	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3100	fi
3101	printf "\n >>> OUTPUT: ${localout[$i]} by FTP in seperate job to"
3102	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3103	printf "\n or higher cycle\n"
3104	echo "ftpcopy -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3105	else
3106	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3107	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3108	printf "\n or higher cycle\n"
3109	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3110	fi
3111	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3112
3113	if [[ $localhost = nech ]]
3114	then
3115	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3116	else
3117	if [[ "$LOGNAME" = b323013 ]]
3118	then
3119	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3120	else
3121	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3122	fi
3123	fi
3124
3125	else
3126
3127	# TRANSFER INNERHALB DIESES JOBS
3128	transfer_failed=false
3129	if [[ $filetransfer_protocol = ftp ]]
3130	then
3131	if [[ $files_for_pes = true ]]
3132	then
3133	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3134	fi
3135	printf "\n >>> OUTPUT: ${localout[$i]} by FTP to"
3136	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3137	ftpcopy -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3138	[[ $? != 0 ]] && transfer_failed=true
3139	else
3140	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3141	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3142	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3143	[[ $? != 0 ]] && transfer_failed=true
3144	fi
3145
3146	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3147	# LOKALER MASCHINE ANLEGEN
3148	if [[ $transfer_failed = true ]]
3149	then
3150	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3151	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3152
3153	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3154	# ANLEGEN.
3155	eval local_catalog=${pathout[$i]}
3156	if [[ ! -d $local_catalog ]]
3157	then
3158	printf " *** local directory does not exist. Trying to create:\n"
3159	printf " $local_catalog \n"
3160	mkdir -p $local_catalog
3161	fi
3162	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3163	transfer_problems=true
3164	fi
3165	fi
3166	else
3167
3168	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3169	actionout[$i]=""
3170	fi
3171	fi
3172
3173
3174	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3175	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3176	# REMOTE-RECHNUNGEN
3177	if [[ "${actionout[$i]}" = tra ]]
3178	then
3179	if [[ $localhost != $fromhost ]]
3180	then
3181	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3182	then
3183
3184	# TRANSFER IN EIGENSTAENDIGEM JOB
3185	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3186	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3187	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3188	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3189
3190	echo "set -x" > transfer_${localout[$i]}
3191	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3192	if [[ $filetransfer_protocol = ftp ]]
3193	then
3194	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP in seperate job to"
3195	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3196	printf "\n or higher cycle\n"
3197	echo "ftpcopy -A -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3198	else
3199	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3200	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3201	printf "\n or higher cycle\n"
3202	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3203	fi
3204	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3205
3206	if [[ $localhost = nech ]]
3207	then
3208	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3209	else
3210	if [[ $LOGNAME = b323013 ]]
3211	then
3212	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3213	else
3214	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3215	fi
3216	fi
3217
3218	else
3219
3220	# TRANSFER INNERHALB DIESES JOBS
3221	transfer_failed=false
3222	if [[ $filetransfer_protocol = ftp ]]
3223	then
3224	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP to"
3225	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3226	ftpcopy -A -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3227	[[ $? != 0 ]] && transfer_failed=true
3228	else
3229	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3230	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3231	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3232	[[ $? != 0 ]] && transfer_failed=true
3233	fi
3234
3235	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3236	# LOKALER MASCHINE ANLEGEN
3237	if [[ $transfer_failed = true ]]
3238	then
3239	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3240	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3241
3242	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3243	# ANLEGEN
3244	eval local_catalog=${pathout[$i]}
3245	if [[ ! -d $local_catalog ]]
3246	then
3247	printf " *** local directory does not exist. Trying to create:\n"
3248	printf " $local_catalog \n"
3249	mkdir -p $local_catalog
3250	fi
3251
3252	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3253	transfer_problems=true
3254	fi
3255	fi
3256	else
3257
3258	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3259	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3260	actionout[$i]=a
3261	fi
3262	fi
3263
3264
3265	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3266	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3267	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3268	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3269	if [[ "${actionout[$i]}" = fl ]]
3270	then
3271	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3272	chmod g+rx $tmp_data_catalog
3273	if [[ $files_for_pes = false ]]
3274	then
3275	printf "\n >>> OUTPUT: ${localout[$i]} to"
3276	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3277	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3278	else
3279	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3280	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3281	mkdir $tmp_data_catalog/${frelout[$i]}
3282	ln -f ${localout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3283	fi
3284
3285
3286	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3287	if [[ $store_on_archive_system = true ]]
3288	then
3289
3290	if [[ $archive_system = asterix ]]
3291	then
3292	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3293	if [[ $files_for_pes = false ]]
3294	then
3295	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3296	else
3297	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3298	fi
3299	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3300	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3301	echo "then" >> archive_${frelout[$i]}
3302	echo " do_stageout=false" >> archive_${frelout[$i]}
3303	echo "else" >> archive_${frelout[$i]}
3304	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3305	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3306	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3307	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3308	if [[ $files_for_pes = false ]]
3309	then
3310	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3311	else
3312	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3313	fi
3314	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3315	echo "fi" >> archive_${frelout[$i]}
3316	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3317	elif [[ $archive_system = DMF ]]
3318	then
3319	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3320	if [[ $files_for_pes = false ]]
3321	then
3322	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3323	locat=DMF
3324	exit
3325	else
3326	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3327	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3328	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3329	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3330	fi
3331	elif [[ $archive_system = tivoli ]]
3332	then
3333	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3334	if [[ $files_for_pes = false ]]
3335	then
3336	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3337	echo "set -x" >> archive_${frelout[$i]}
3338	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3339	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3340	else
3341
3342	echo "set -x" >> archive_${frelout[$i]}
3343	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3344	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3345	cd $tmp_data_catalog
3346	all_files=`ls -1 ${frelout[$i]}/*`
3347	cd - > /dev/null
3348	(( inode = 0 ))
3349	(( tp1 = tasks_per_node + 1 ))
3350	while (( inode < nodes ))
3351	do
3352	# echo "*** all_files = \"$all_files\" "
3353	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3354	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3355	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3356	# echo "*** files = \"$files\" "
3357	# echo "*** all_files = \"$all_files\" "
3358	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3359	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3360	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3361	(( inode = inode + 1 ))
3362	done
3363	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3364	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3365	fi
3366	elif [[ $archive_system = ut ]]
3367	then
3368	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3369	if [[ $files_for_pes = false ]]
3370	then
3371	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3372	echo "set -x" >> archive_${frelout[$i]}
3373	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3374	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3375	else
3376
3377	echo "set -x" >> archive_${frelout[$i]}
3378	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3379	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3380	cd $tmp_data_catalog
3381	all_files=`ls -1 ${frelout[$i]}/*`
3382	cd - > /dev/null
3383	(( inode = 0 ))
3384	(( tp1 = tasks_per_node + 1 ))
3385	while (( inode < nodes ))
3386	do
3387	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3388	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3389	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3390	(( inode = inode + 1 ))
3391	done
3392	fi
3393	elif [[ $archive_system = none ]]
3394	then
3395	printf " +++ archiving on $localhost not available!\n"
3396	fi
3397
3398	if [[ $archive_system != none ]]
3399	then
3400	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3401	then
3402	subjob -d -v -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3403	elif [[ $localhost = nech ]]
3404	then
3405	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3406	fi
3407	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3408	fi
3409	else
3410	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3411	fi
3412
3413
3414	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3415	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3416	if [[ $files_for_pes = false ]]
3417	then
3418	cat /dev/null > ${pathout[$i]}
3419	else
3420	mkdir -p ${pathout[$i]}
3421	fi
3422
3423	fi
3424
3425
3426	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3427	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3428	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3429	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3430	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3431	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3432	if [[ "${actionout[$i]}" = ar ]]
3433	then
3434	if [[ $files_for_pes = false ]]
3435	then
3436	printf "\n >>> OUTPUT: ${localout[$i]} to"
3437	printf "\n ${pathout[$i]}"
3438	printf "\n File will be copied to archive-system ($archive_system) !\n"
3439	else
3440	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3441	printf "\n ${pathout[$i]}"
3442	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3443	fi
3444	mv ${localout[$i]} ${frelout[$i]}
3445
3446	file_saved=false
3447
3448	if [[ $archive_system = asterix ]]
3449	then
3450	do_stageout=true
3451	(( stageout_anz = 0 ))
3452	while [[ $do_stageout = true ]]
3453	do
3454	if [[ $files_for_pes = false ]]
3455	then
3456	stageout ${frelout[$i]} > STAGE_OUTPUT
3457	else
3458	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3459	fi
3460	cat STAGE_OUTPUT
3461	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3462	then
3463	file_saved=true
3464	do_stageout=false
3465	else
3466	if [[ $files_for_pes = false ]]
3467	then
3468	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3469	else
3470	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3471	fi
3472	(( stageout_anz = stageout_anz + 1 ))
3473	if (( stageout_anz == 10 ))
3474	then
3475	printf "\n +++ stoped after 10 unsuccessful tries!"
3476	archive_save=false
3477	do_stageout=false
3478	else
3479	printf "\n *** new try to store on archive after 15 min:"
3480	sleep 900
3481	fi
3482	fi
3483	done
3484	elif [[ $archive_system = DMF ]]
3485	then
3486	if [[ $files_for_pes = false ]]
3487	then
3488	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3489	locat=DMF
3490	exit
3491	else
3492	rm -rf $ARCHIVE/${frelout[$i]}
3493	cp -r ${frelout[$i]} $ARCHIVE
3494	fi
3495	file_saved=true
3496	elif [[ $archive_system = tivoli ]]
3497	then
3498	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3499	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3500	# GELEGT WERDEN
3501	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3502	chmod g+rx $tmp_data_catalog
3503	if [[ $files_for_pes = false ]]
3504	then
3505	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3506	else
3507	mkdir $tmp_data_catalog/${frelout[$i]}
3508	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3509	fi
3510
3511	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3512	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3513	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3514	if [[ $files_for_pes = false ]]
3515	then
3516	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3517	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3518	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3519	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3520	else
3521	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3522	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3523	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3524	fi
3525
3526	subjob -v -d -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3527	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3528	file_saved=true
3529
3530	elif [[ $archive_system = ut ]]
3531	then
3532	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3533	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3534	# GELEGT WERDEN
3535	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3536	chmod g+rx $tmp_data_catalog
3537	if [[ $files_for_pes = false ]]
3538	then
3539	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3540	else
3541	mkdir $tmp_data_catalog/${frelout[$i]}
3542	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3543	fi
3544
3545	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3546	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3547	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3548	if [[ $files_for_pes = false ]]
3549	then
3550	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3551	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3552	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3553	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3554	else
3555	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3556	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3557	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3558	fi
3559
3560	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3561	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3562	file_saved=true
3563
3564	else
3565	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3566	archive_save=false
3567	fi
3568	if [[ $file_saved = true ]]
3569	then
3570	if [[ $files_for_pes = false ]]
3571	then
3572	cat /dev/null > ${pathout[$i]}
3573	else
3574	mkdir -p ${pathout[$i]}
3575	fi
3576	fi
3577	fi
3578
3579	# APPEND AUF LOKALER MASCHINE
3580	if [[ "${actionout[$i]}" = "a" ]]
3581	then
3582	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3583	cat ${localout[$i]} >> ${pathout[$i]}
3584	fi
3585
3586	# KOPIEREN AUF LOKALER MASCHINE
3587	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3588	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3589	then
3590
3591	# KOPIEREN AUF EINPROZESSORMASCHINE
3592	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3593	then
3594	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3595	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3596	else
3597	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3598	cp ${localout[$i]} ${pathout[$i]}
3599	fi
3600
3601	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3602	then
3603
3604	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3605	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3606	# WIRD DANN KOPIERT
3607	# PER MOVE UMBENANNT WERDEN
3608	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3609	cp -r ${localout[$i]} ${pathout[$i]}
3610
3611	fi
3612	fi
3613	done
3614	if (( i != 0 ))
3615	then
3616	if [[ $transfer_problems = true ]]
3617	then
3618	printf "\n$striche\n *** OUTPUT-files saved"
3619	printf "\n +++ WARNING: some data transfers failed! \n"
3620	else
3621	printf "\n$striche\n *** all OUTPUT-files saved \n"
3622	fi
3623	fi
3624
3625
3626	# EVENTUELL FOLGEJOB STARTEN
3627	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3628	if [[ -f CONTINUE_RUN ]]
3629	then
3630
3631	if [[ $archive_save = true ]]
3632	then
3633
3634	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3635	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3636	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3637	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3638	# HANDEN
3639	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3640	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3641	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3642	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3643	then
3644	mc=`echo $mc \| sed 's/#/f/g'`
3645	fi
3646
3647
3648	# JOB STARTEN
3649	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3650	echo " $mc"
3651	printf "\n$striche\n"
3652	if [[ $localhost != $fromhost ]]
3653	then
3654
3655	if [[ $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3656	then
3657	echo "*** ssh will be used to initiate restart-runs!"
3658	echo " return_addres=\"$return_addres\" "
3659	echo " return_username=\"$return_username\" "
3660	if [[ $return_addres = 172.20.25.41 ]]
3661	then
3662	# WORKAROUND AUF SCIROCCO AM TIT
3663	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3664	else
3665	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3666	fi
3667	else
3668	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3669	locat=restart; exit
3670	fi
3671
3672	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3673	# DER AKTUELLE JOB ENDET
3674	sleep 30
3675
3676	else
3677
3678	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3679	# RUFEN WERDEN
3680	cd $LOCAL_PWD
3681	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3682	cd - > /dev/null
3683	fi
3684	printf "\n$striche\n *** restart-run initiated \n"
3685
3686
3687	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3688	# GEHOLT WORDEN SIND, LOESCHEN
3689	(( i = 0 ))
3690	while (( i < iin ))
3691	do
3692	(( i = i + 1 ))
3693	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3694	then
3695	rm -r $tmp_data_catalog/${frelin[$i]}
3696	fi
3697	done
3698
3699	else
3700
3701	printf "\n +++ no restart-run possible, since errors occured"
3702	printf "\n during the archive process"
3703	fi
3704
3705	fi
3706
3707
3708
3709	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3710	if [[ "$email_notification" != "" ]]
3711	then
3712
3713	if [[ $localhost != $fromhost ]]
3714	then
3715	if [[ -f CONTINUE_RUN ]]
3716	then
3717	echo "PALM restart run necessary" > email_text
3718	echo "description header of actual run:" >> email_text
3719	cat CONTINUE_RUN >> email_text
3720	echo "mrun-command to restart:" >> email_text
3721	echo "$mc" >> email_text
3722	else
3723	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3724	fi
3725	mail $email_notification < email_text
3726	printf "\n *** email notification sent to \"$email_notification\" "
3727	fi
3728	fi
3729
3730
3731
3732	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3733	cd $HOME
3734	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3735
3736	else
3737
3738
3739	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3740	# CHENDE AKTIONEN DURCHGEFUEHRT
3741
3742	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3743	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -f $filetransfer_protocol -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3744	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3745	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3746	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3747	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3748	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3749	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3750	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3751	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3752	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3753	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3754	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3755	if [[ $use_openmp = true ]]
3756	then
3757	mrun_com=${mrun_com}" -O"
3758	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3759	else
3760	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3761	fi
3762	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3763	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3764	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3765	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3766	[[ $node_usage != default ]] && mrun_com=${mrun_com}" -n $node_usage"
3767	if [[ $do_remote = true ]]
3768	then
3769	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3770	fi
3771
3772
3773	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3774	jobfile=jobfile.$RANDOM
3775
3776
3777	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3778	echo "mkdir $TEMPDIR" >> $jobfile
3779	echo "cd $TEMPDIR" >> $jobfile
3780
3781
3782	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3783	if [[ $do_trace = true ]]
3784	then
3785	echo "set -x" >> $jobfile
3786	else
3787	echo "set +vx" >> $jobfile
3788	fi
3789
3790
3791	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3792	# SOWIE GEGEBENENFALLS DES MAKEFILES
3793	if [[ $do_compile = true ]]
3794	then
3795
3796	source_catalog=SOURCES_FOR_RUN_$fname
3797
3798	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3799	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3800	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3801	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3802	echo "export SOURCES_COMPLETE=true" >> $jobfile
3803	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3804
3805	for filename in $source_list
3806	do
3807	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3808	echo "cat > $filename << \"%END%\"" >> $jobfile
3809	cat $source_catalog/$filename >> $jobfile
3810	echo " " >> $jobfile
3811	echo "%END%" >> $jobfile
3812	echo " " >> $jobfile
3813	done
3814
3815	if [[ "$use_makefile" = true ]]
3816	then
3817	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3818	echo "cat > Makefile << \"%END%\"" >> $jobfile
3819	cat $source_catalog/Makefile >> $jobfile
3820	echo " " >> $jobfile
3821	echo "%END%" >> $jobfile
3822	echo " " >> $jobfile
3823	fi
3824
3825	echo "cd - > /dev/null" >> $jobfile
3826
3827	fi
3828
3829
3830	# ABSPEICHERN DER KONFIGURATIONSDATEI
3831	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3832	echo "cat > $config_file << \"%END%\"" >> $jobfile
3833	cat $config_file >> $jobfile
3834	echo "%END%" >> $jobfile
3835	echo " " >> $jobfile
3836
3837
3838	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3839	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3840	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3841	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3842	echo "%END%" >> $jobfile
3843	if [[ $host = lctit ]]
3844	then
3845	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3846	echo "mv mrun_new $mrun_script_name" >> $jobfile
3847	fi
3848	echo "chmod u+x $mrun_script_name" >> $jobfile
3849	echo "execute_mrun=true" >> $jobfile
3850	echo " " >> $jobfile
3851
3852	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3853	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3854	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3855	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3856	if [[ $do_remote = true ]]
3857	then
3858	(( i = 0 ))
3859	while (( i < iin ))
3860	do
3861	(( i = i + 1 ))
3862	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3863	if [[ "${transin[$i]}" = job ]]
3864	then
3865	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3866	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3867	echo " " >> $jobfile
3868	echo "%END%" >> $jobfile
3869	else
3870	if [[ $filetransfer_protocol = ftp ]]
3871	then
3872	echo "ftpcopy -b -o -g -s $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3873	else
3874	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3875	fi
3876	fi
3877
3878	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3879	echo "if [[ \$? = 1 ]]" >> $jobfile
3880	echo "then" >> $jobfile
3881	echo " echo \" \" " >> $jobfile
3882	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3883	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3884	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3885	echo " execute_mrun=false" >> $jobfile
3886	echo "fi" >> $jobfile
3887	done
3888	fi
3889
3890	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3891	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
3892	echo "LOCAL_PWD=$working_directory" >> $jobfile
3893	echo "export LOCAL_PWD" >> $jobfile
3894
3895	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
3896	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
3897	echo "export LOCAL_MRUN_PATH" >> $jobfile
3898
3899	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
3900	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
3901	then
3902	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
3903	fi
3904
3905	# MRUN AUF ZIELRECHNER AUFRUFEN
3906	echo "set -x" >> $jobfile
3907	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
3908
3909	echo 'ls -al; echo `pwd`' >> $jobfile
3910	echo "cd \$HOME" >> $jobfile
3911	echo "rm -rf $TEMPDIR" >> $jobfile
3912
3913
3914
3915
3916	# JOB PER SUBJOB STARTEN
3917	if [[ $silent = false ]]
3918	then
3919	printf "\n "
3920	else
3921	printf "\n\n"
3922	fi
3923
3924	subjob $job_on_file -h $host -u $remote_username -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -f $filetransfer_protocol -v $jobfile
3925	rm -rf $jobfile
3926
3927
3928	fi # ENDE REMOTE-TEIL
3929
3930
3931
3932	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |