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source: palm/trunk/SCRIPTS/mrun @ 71

Last change on this file since 71 was 71, checked in by raasch, 18 years ago
bugfixes in mrun
Property svn:keywords set to `Rev`
File size: 149.0 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 61 2007-03-12 05:42:06Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114
115
116
117
118	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
119
120	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
121	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
122	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
123
124	AddFilenames=""
125	additional_conditions=""
126	add_source_path=""
127	afname=""
128	archive_save=true
129	archive_system=none
130	compiler_name=""
131	cond1=""
132	cond2=""
133	config_file=.mrun.config
134	cpp_opts=""
135	cpumax=0
136	cpurest=0
137	delete_temporary_catalog=true
138	do_batch=false
139	do_compile=true
140	do_remote=false
141	do_stagein=true
142	do_stageout=true
143	do_trace=false
144	email_notification=""
145	exclude=""
146	executable=""
147	execution_error=false
148	filetransfer_protocol=""
149	fimm=false
150	fname=test
151	fromhost=""
152	host=""
153	host_file=""
154	hp=""
155	ignore_archive_error=false
156	input_list=""
157	interpreted_config_file=""
158	job_on_file=""
159	keep_data_from_previous_run=false
160	localhost_realname=$(hostname)
161	local_compile=false
162	locat=normal
163	mainprog=""
164	makefile=""
165	mc=$0
166	while [[ $(echo $mc \| grep -c "/") != 0 ]]
167	do
168	mc=`echo $mc \| cut -f2- -d"/"`
169	done
170	module_files=""
171	MODULE_OPTIONS=""
172	mrun_script_name=$mc
173	netcdf_support=false
174	node_usage=default
175	numprocs=""
176	OOPT=""
177	openmp=false
178	output_list=""
179	package_list=""
180	punkte="..........................................................."
181	queue=none
182	read_from_config=""
183	restart_run=false
184	# return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
185	return_addres=1.2.3.4
186	if [[ $return_addres = 130.75.105.158 ]]
187	then
188	return_addres=172.20.25.41
189	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
190	fi
191	# if [[ $return_addres = 210.117.65.1 ]]
192	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
193	# then
194	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
195	# fi
196	return_password=""
197	return_username=$LOGNAME
198	remotecall=false
199	remote_username=""
200	run_mode=""
201	scirocco=false
202	store_on_archive_system=true
203	striche=" ----------------------------------------------------------------------------"
204	silent=false
205	source_list=""
206	source_path=SOURCE
207	tasks_per_node=""
208	threads_per_task=1
209	tmpcreate=false
210	tmp_data_catalog=""
211	transfer_problems=false
212	usern=$LOGNAME
213	use_makefile=""
214	working_directory=`pwd`
215	TOPT=""
216	XOPT=""
217	zeit=$( date \| cut -c 12-19 )
218
219	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
220	typeset -i cputime i ii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
221
222	typeset -R30 calltime
223	typeset -L20 spalte1
224	typeset -L40 spalte2
225	typeset -L60 spalte3
226	typeset -L35 string1=`date`
227	typeset -L12 string2=$usern
228	typeset -L12 string3=$localhost_realname
229	typeset -L12 string4
230	typeset -L12 string5
231	typeset -L30 version="MRUN 2.0 Rev$Rev: 71 $"
232
233
234
235	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
236	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
237
238	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
239	# EXPORTIERT WERDEN
240	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
241	export input_list memory numprocs output_list queue run_mode
242
243
244
245	# FEHLERBEHANDLUNG
246	# BEI EXIT:
247	trap 'rm -rf tmp_mrun
248	if [[ $locat != localhost ]]
249	then
250	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
251	# then
252	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
253	#MRUN-calls on $localhost
254	#
255	#date and time user localhost remotehost termination mrun-command
256	#--------------------------------------------------------------------------------------------------------------------
257	#%STATEND%
258	# chmod 666 ${mrun_path}/statistik/mrun_statistik
259	# fi
260	#
261	# # EINTRAG IN DIE STATISTIK-DATEI
262	# string4=$host
263	# string5=$locat
264	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
265	# then
266	# if [[ $do_batch = true ]]
267	# then
268	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
269	# else
270	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
271	# fi
272	# fi
273	echo " " > /dev/null
274	fi
275
276	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
277	then
278
279	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
280	(( i = 0 ))
281	while (( i < iec ))
282	do
283	(( i = i + 1 ))
284	printf "\n *** Execution of ERROR-command:\n"
285	printf " >>> ${err_command[$i]}\n"
286	eval ${err_command[$i]}
287	done
288	if [[ -n $interpreted_config_file ]] then
289	rm -rf $interpreted_config_file
290	fi
291	if [[ -n .mrun_environment ]] then
292	rm -rf .mrun_environment
293	fi
294	if [[ $tmpcreate = true ]]
295	then
296	printf "\n *** Contents of \"$TEMPDIR\":\n"
297	ls -al; cd
298	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
299	fi
300	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
301	then
302	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
303	fi
304	printf "\n\n+++ MRUN killed \n\n"
305	elif [[ $locat != control_c ]]
306	then
307	printf "\n\n --> all actions finished\n\n"
308	printf " Bye, bye $usern !!\n\n"
309	fi' exit
310
311
312	# BEI TERMINAL-BREAK:
313	trap 'rm -rf tmp_mrun
314	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
315	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
316	then
317	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
318	fi
319	printf "\n+++ MRUN killed by \"^C\" \n\n"
320	locat=control_c
321	exit
322	' 2
323
324
325	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
326	# BEEN SET
327	if [[ "$PALM_BIN" = "" ]]
328	then
329	printf "\n +++ environment variable PALM_BIN has not been set"
330	printf "\n please set it to the directory where the PALM scripts are located"
331	locat=palm_bin; exit
332	fi
333
334
335	# EVTL. NAMEN DES LOKALEN RECHNERS MIT UEBERGREIFENDEM NAMEN VERSEHEN
336	case $localhost_realname in
337	(atmos) localhost=lcide;;
338	(bora\|breva\|elephanta\|gallego\|gregale\|hababai\|irifi\|levanto\|maestro\|orkan\|ostria\|poniente\|quanero\|scirocco\|vorias) localhost=lcmuk;;
339	(breg-en0\|berni-en0) localhost=ibmb; archive_system=tivoli;;
340	(cs*) localhost=nech; archive_system=ut;;
341	(fimm.bccs.uib.no) localhost=lcmuk;;
342	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII; localhost=neck;;
343	(ground.yonsei.ac.kr) localhost=decalpha;;
344	(gfdl3.yonsei.ac.kr) localhost=decalpha;;
345	(gfdl5) localhost=ibmy;;
346	(hreg-en0\|hanni-en0) localhost=ibmh; archive_system=tivoli;;
347	(nobel*) localhost=ibms;;
348	(sun1\|sun2) localhost=unics;;
349	(tgg*) localhost=lctit;;
350	(*) printf "\n +++ Host \"$localhost_realname\" not admitted for mrun \n"
351	locat=localhost; exit;;
352	esac
353
354	[[ $localhost_realname = scirocco ]] && scirocco=true
355	[[ $localhost_realname = fimm.bccs.uib.no ]] && fimm=true
356
357
358
359	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
360	# FUER FOLGEJOBS BENOETIGT WIRD
361	while getopts :a:AbBc:Cd:D:f:Fh:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX: option
362	do
363	case $option in
364	(a) afname=$OPTARG;;
365	(A) store_on_archive_system=false; mc="$mc -A";;
366	(b) do_batch=true; mc="$mc -b";;
367	(B) delete_temporary_catalog=false; mc="$mc -B";;
368	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
369	(C) restart_run=true; mc="$mc -C";;
370	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
371	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
372	(f) filetransfer_protocol=$OPTARG; mc="$mc -f$OPTARG";;
373	(F) job_on_file="-D"; mc="$mc -F";;
374	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
375	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
376	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
377	(I) ignore_archive_error=true; mc="$mc -I";;
378	(k) keep_data_from_previous_run=true; mc="$mc -k";;
379	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
380	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
381	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
382	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
383	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
384	(O) use_openmp=true; mc="$mc -O";;
385	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
386	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
387	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
388	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
389	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
390	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
391	(S) read_from_config=false; mc="$mc -S";;
392	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
393	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
394	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
395	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
396	(v) silent=true; mc="$mc -v";;
397	(x) do_trace=true;set -x; mc="$mc -x";;
398	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
399	(\?) printf "\n +++ unknown option $OPTARG \n"
400	printf "\n --> type \"$0 ?\" for available options \n"
401	locat=parameter;exit;;
402	esac
403	done
404
405
406	# EVTL. POSITIONSPARAMETER EINLESEN
407	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
408	shift OPTIND-1
409
410
411	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
412	if [[ "$1" = "?" ]]
413	then
414	(printf "\n *** mrun can be called as follows:\n"
415	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
416	printf "\n Description of available options:\n"
417	printf "\n Option Description Default-Value"
418	printf "\n -a base name of input files equiv. -d"
419	printf "\n -A no archiving when using file-attribute fl"
420	printf "\n -b batch-job on local machine ---"
421	printf "\n -B do not delete temporary directory at end ---"
422	printf "\n -c configuration file .mrun.config"
423	printf "\n -d base name of files attached to program test"
424	printf "\n -D preprocessor(cpp)-directives \"\" "
425	printf "\n -f filetransfer protocol (ftp or scp) depending on -h"
426	printf "\n -F create remote job file only ---"
427	printf "\n -h execution host $localhost_realname"
428	printf "\n -i INPUT control list \"\" "
429	printf "\n -I archiving errors of previous batch-jobs"
430	printf "\n will be ignored"
431	printf "\n -k keep data from previous run"
432	printf "\n -K additional conditions for controling"
433	printf "\n usage of conditional code and"
434	printf "\n env-variables in configuration file \"\" "
435	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
436	printf "\n -M Makefile name Makefile"
437	printf "\n -n node usage (shared/not_shared) depending on -h"
438	printf "\n -o OUTPUT control list \"\" "
439	printf "\n -O use OpenMP ---"
440	printf "\n -p software package list \"\" "
441	printf "\n -q queue \"$queue\" "
442	printf "\n -r run control list (combines -i -o) \"\" "
443	printf "\n -s filenames of routines to be compiled \"\" "
444	printf "\n must end with .f, .f90, .F, or .c !"
445	printf "\n use \"..\" for more than one file and wildcards"
446	printf "\n -s TEST compiles all files with w-permit"
447	printf "\n -S config file interpreted by shellscript ---"
448	printf "\n -t allowed cpu-time in seconds (batch) 0"
449	printf "\n -T tasks per node depending on -h"
450	printf "\n -u username on remote machine \"\" "
451	printf "\n -v no prompt for confirmation ---"
452	printf "\n -x tracing of mrun for debug purposes ---"
453	printf "\n -X # of processors (on parallel machines) 1"
454	printf "\n "
455	printf "\n Possible values of positional parameter <modus>:"
456	printf "\n \"?\" - this outline \n\n") \| more
457	exit
458	elif [[ "$1" != "" ]]
459	then
460	printf "\n +++ positional parameter $1 unknown \n"
461	locat=parameter; exit
462	fi
463
464
465
466	# KURZE STARTMELDUNG
467	printf "\n*** $version "
468	printf "\n will be executed. Please wait ..."
469
470
471	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
472	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
473	[[ "$afname" = "" ]] && afname=$fname
474
475
476	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
477	if [[ "$run_mode" != "" ]]
478	then
479	input_list="$input_list $run_mode"
480	output_list="$output_list $run_mode"
481	fi
482
483
484	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
485	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
486	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
487	# STARTET)
488	if [[ "$fromhost" = "" ]]
489	then
490	fromhost=$localhost
491	fi
492
493
494	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
495	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
496	then
497	source_list=TEST
498	local_compile=true
499	host=$localhost
500	fi
501
502
503	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
504	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
505	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
506	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
507	if [[ -n $host && "$host" != $localhost ]]
508	then
509	do_batch=true
510	do_remote=true
511	case $host in
512	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lctit\|unics) true;;
513	(*) printf "\n"
514	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
515	printf "\n or NQS not available on execution host!"
516	locat=nqs; (( iec = 0 )); exit;;
517	esac
518	else
519	host=$localhost
520	fi
521
522
523	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
524	if [[ -n $additional_conditions ]]
525	then
526	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
527	cond1=`echo $additional_conditions \| cut -d" " -f1`
528	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
529	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
530	if [[ -n $dummy ]]
531	then
532	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
533	locat=options; exit
534	fi
535	fi
536
537
538	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
539	# ARCHIVIERUNG FEHLGESCHLAGEN IST
540	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
541	then
542	if [[ $ignore_archive_error = false ]]
543	then
544	printf "\n +++ data archiving of previous run failed"
545	printf "\n see directory \~/job_queue on remote machine"
546	locat=archive; exit
547	else
548	printf "\n +++ warning: data archiving in a previous run failed"
549	printf "\n MRUN continues, trying to get backup copy"
550	fi
551	fi
552
553
554	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
555	if [[ ! -f $config_file ]]
556	then
557	printf "\n\n +++ configuration file: "
558	printf "\n $config_file"
559	printf "\n does not exist"
560	locat=connect; exit
561	fi
562
563
564
565	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
566	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
567	if [[ "$read_from_config" = false ]]
568	then
569
570	[[ $silent = false ]] && printf "\n Reading the configuration file... "
571	while read zeile
572	do
573	[[ $silent = false ]] && printf "."
574
575
576	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
577	# ERSETZEN
578	eval zeile=\"$zeile\"
579
580
581	# INTERPRETATION DER ZEILE
582	if [[ "$(echo $zeile)" = "" ]]
583	then
584	# LEERZEILE, KEINE AKTION
585	continue
586
587	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
588	then
589
590	# ZEILE IST KOMMENTARZEILE
591	true
592
593	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
594	then
595
596	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
597	zeile=$(echo $zeile \| cut -c2-)
598	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
599	var=`echo $zeile \| cut -d" " -f1`
600	value=`echo $zeile \| cut -d" " -s -f2`
601	for_host=`echo $zeile \| cut -d" " -s -f3`
602	for_cond1=`echo $zeile \| cut -d" " -s -f4`
603	for_cond2=`echo $zeile \| cut -d" " -s -f5`
604
605	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
606	then
607
608	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
609	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
610	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
611
612
613	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
614	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
615	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
616	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
617	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
618	# KONFIGURATIONSDATEI
619	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
620	then
621	eval $var=\$value
622
623	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
624	if [[ $do_trace = true ]]
625	then
626	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
627	fi
628	fi
629
630	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
631	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
632	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
633	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
634	if [[ $var = host ]]
635	then
636	if [[ -n $host && "$host" != $localhost ]]
637	then
638	do_batch=true
639	do_remote=true
640	case $host in
641	(ibm\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
642	(*) printf "\n +++ no queueing system available on execution host \"$host\""
643	locat=nqs; exit;;
644	esac
645	else
646	host=$localhost
647	fi
648	fi
649
650	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
651	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
652	# DEN PROGRAMMEN BENOETIGT WERDEN
653	export $var
654	fi
655
656
657
658
659	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
660	then
661
662	# ZEILE DEFINIERT ERROR-KOMMANDO
663	(( iec = iec + 1 ))
664	zeile=$(echo $zeile \| cut -c4-)
665	err_command[$iec]="$zeile"
666
667	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
668	then
669
670	# ZEILE DEFINIERT INPUT-KOMMANDO
671	(( iic = iic + 1 ))
672	zeile=$(echo $zeile \| cut -c4-)
673	in_command[$iic]="$zeile"
674
675	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
676	then
677
678	# ZEILE DEFINIERT OUTPUT-KOMMANDO
679	(( ioc = ioc + 1 ))
680	zeile=$(echo $zeile \| cut -c4-)
681	out_command[$ioc]="$zeile"
682
683	else
684
685	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
686	# s2a: in/out - Feld
687	# s2b: loc - Feld (optional)
688	# s2c: tr/ar - Feld (optional)
689	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
690	s1=`echo $zeile \| cut -d" " -f1`
691	s2=`echo $zeile \| cut -d" " -s -f2`
692	s2a=$(echo $s2 \| cut -d":" -f1)
693	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
694	then
695	s2b=""
696	s2c=""
697	else
698	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
699	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
700	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
701	fi
702	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
703	s3=`echo $zeile \| cut -d" " -f3`
704	s4=`echo $zeile \| cut -d" " -s -f4`
705	s5=`echo $zeile \| cut -d" " -s -f5`
706	s6=`echo $zeile \| cut -d" " -s -f6`
707
708
709	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
710	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
711	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
712	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
713	# HANDEN SEIN MUSS (D.H. s2b = loc)
714	IFSALT="$IFS"; IFS="$IFS:"
715	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
716	then
717	found=false
718	for actual in $input_list
719	do
720	for formal in $s3
721	do
722	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
723	done
724	done
725	if [[ $found = true ]]
726	then
727	(( iin = iin + 1 ))
728	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
729	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
730	extin[$iin]=$s6
731	fi
732	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
733	then
734	found=false
735	for actual in $output_list
736	do
737	for formal in $s3
738	do
739	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
740	done
741	done
742	if [[ $found = true ]]
743	then
744	(( iout = iout + 1 ))
745	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
746	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
747	fi
748	elif [[ "$s2a" != in && "$s2a" != out ]]
749	then
750	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
751	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
752	locat=connect; exit
753	fi
754	IFS="$IFSALT"
755	fi
756	done < $config_file
757
758	else
759
760
761	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
762	[[ $silent = false ]] && printf "..."
763	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
764	export interpreted_config_file=.icf.$RANDOM
765
766	# case $localhost_realname in
767	# (caurus\|twister) interpret_config.hp;;
768	# (bora\|breva\|elephanta\|gallego\|gregale\|hababai\|maestro\|orkan\|ostria) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel_ifc/8.1/lib/; interpret_config_9.x;;
769	# (levanto\|vorias) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel/ifort/9.1.037/lib/; interpret_config_9.x_levanto;;
770	# (quanero) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel_fc_80/lib; interpret_config_9.x;;
771	# (*) interpret_config.x;;
772	# esac
773
774
775	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
776	# VERFUEGUNG STELLEN
777	cat > .mrun_environment << %%END%%
778	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
779	config_file = '$config_file', do_remote = '$do_remote',
780	do_trace = '$do_trace', host = '$host',
781	input_list = '$input_list', icf = '$interpreted_config_file',
782	localhost = '$localhost', output_list = '$output_list' /
783
784	%%END%%
785
786	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
787	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
788	mrun_memory=$memory
789	mrun_cpumax=$cpumax
790	mrun_numprocs=$numprocs
791
792	if [[ $localhost_realname = "gate" ]]
793	then
794	interpret_config_gate.x
795	else
796	interpret_config.x
797	fi
798	rm .mrun_environment
799
800
801	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
802	chmod u+x $interpreted_config_file
803	export PATH=$PATH:.
804	. $interpreted_config_file
805	rm $interpreted_config_file
806
807
808	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
809	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
810	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
811	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
812
813	fi
814
815
816	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
817	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
818	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
819	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
820	if [[ "$SOURCES_COMPLETE" = "" ]]
821	then
822
823	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
824	# VEREINBART WURDE
825	source_path=""
826	line=""
827	grep "%source_path" $config_file > tmp_mrun
828	while read line
829	do
830	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
831	then
832	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
833	then
834	global_source_path=`echo $line \| cut -d" " -f2`
835	fi
836	fi
837	done < tmp_mrun
838
839	line=""
840	found=false
841	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
842	while read line
843	do
844	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
845	then
846	if [[ $found = true ]]
847	then
848	printf "\n\n +++ more than one source path found in configuration file"
849	printf "\n for local host \"$localhost\" "
850	locat=source_path; exit
851	fi
852	source_path=`echo $line \| cut -d" " -f2`
853	found=true
854	fi
855	done < tmp_mrun
856	rm tmp_mrun
857
858	if [[ "$source_path" = "" ]]
859	then
860	if [[ "$global_source_path" != "" ]]
861	then
862	source_path=$global_source_path
863	else
864	printf "\n\n +++ no source path found in configuration file"
865	printf "\n for local host \"$localhost\" "
866	locat=source_path; exit
867	fi
868	fi
869	eval source_path=$source_path
870
871	if [[ ! -d $source_path ]]
872	then
873	printf "\n\n +++ source path \"$source_path\" on local host"
874	printf "\n \"$localhost\" does not exist"
875	locat=source_path; exit
876	fi
877
878	fi
879
880
881
882	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
883	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
884	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
885	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
886	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
887	if [[ -n $host && "$host" != $localhost ]]
888	then
889	do_batch=true
890	do_remote=true
891	case $host in
892	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
893	(*) printf "\n"
894	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
895	printf "\n or no queueing system available on execution host!"
896	locat=nqs; (( iec = 0 )); exit;;
897	esac
898	else
899	host=$localhost
900	fi
901
902
903	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
904	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
905	then
906
907	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
908	if [[ ! -n $numprocs ]]
909	then
910	printf "\n"
911	printf "\n +++ option \"-K parallel\" requires additional specification"
912	printf "\n of the number of processors to be used by"
913	printf "\n mrun-option \"-X\" or by environment-variable"
914	printf "\n \"numprocs\" in the configuration file"
915	locat=numprocs; (( iec = 0 )); exit
916	fi
917
918	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
919	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
920	# GESAMTPROZESSORANZAHL IST
921	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
922	then
923	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
924	(( ival = $tasks_per_node ))
925	(( pes = numprocs ))
926	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
927	# then
928	# (( pes = pes - 1 ))
929	# fi
930	(( ii = pes / ival ))
931	if (( pes - ii * ival > 0 ))
932	then
933	printf "\n"
934	printf "\n +++ tasks per node (option \"-T\") must be an integral"
935	printf "\n divisor of the total number of processors (option \"-X\")"
936	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
937	locat=tasks_per_node; (( iec = 0 )); exit
938	fi
939	fi
940
941	# IBMY HAT NUR EINEN KNOTEN
942	if [[ $host = ibmy ]]
943	then
944	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
945	then
946	printf "\n"
947	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
948	printf "\n total number of processors (option \"-X\")"
949	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
950	locat=tasks_per_node; (( iec = 0 )); exit
951	fi
952	fi
953
954	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
955	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
956	if [[ $use_openmp = true ]]
957	then
958	threads_per_task=$tasks_per_node
959	tasks_per_node=1
960	fi
961	OOPT="-O $threads_per_task"
962	TOPT="-T $tasks_per_node"
963
964	# GESAMTZAHL DER KNOTEN BESTIMMEN
965	if [[ "$tasks_per_node" != "" ]]
966	then
967	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
968	fi
969
970	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
971	# SETZEN
972	if [[ $node_usage = default ]]
973	then
974	if [[ $host = ibms ]]
975	then
976	node_usage=shared
977	else
978	node_usage=not_shared
979	fi
980	fi
981	if [[ $node_usage != shared && $node_usage != not_shared ]]
982	then
983	printf "\n"
984	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
985	printf "\n \"shared\" or \"not_shared\""
986	locat=tasks_per_node; (( iec = 0 )); exit
987	fi
988
989	fi
990
991	# PRUEFEN, OB HOSTFILE EXISTIERT
992	if [[ -n $hostfile ]]
993	then
994	if [[ ! -f $hostfile ]]
995	then
996	printf "\n"
997	printf "\n +++ hostfile \"$hostfile\" does not exist"
998	locat=hostfile; exit
999	fi
1000	fi
1001
1002	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1003	if [[ $host = ibmy && $do_remote = false ]]
1004	then
1005	if [[ ! -f $HOME/.rhosts ]]
1006	then
1007	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1008	printf "\n\n *** file:"
1009	printf "\n $HOME/.rhosts"
1010	printf "\n was created\n"
1011	fi
1012	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1013	then
1014	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1015	printf "\n\n *** file:"
1016	printf "\n $HOME/.rhosts"
1017	printf "\n was extended by the name of the current host\n"
1018	fi
1019	fi
1020
1021	# DEFAULT-DATEITRANSFER-PROTOKOLL FESTLEGEN
1022	if [[ "$filetransfer_protocol" = "" ]]
1023	then
1024	case $host in
1025	(nech\|neck\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit) filetransfer_protocol=scp;;
1026	(*) filetransfer_protocol=ftp;;
1027	esac
1028	fi
1029
1030	# PRUEFEN, OB ZULAESSIGES DATEITRANSFER-PROTOKOLL GEWAEHLT WURDE
1031	if [[ "$filetransfer_protocol" != ftp && "$filetransfer_protocol" != scp ]]
1032	then
1033	printf "\n"
1034	printf "\n +++ illegal value \"$filetransfer_protocol\" for Option -f"
1035	printf "\n only \"ftp\" or \"scp\" are allowed"
1036	locat=options; exit
1037	fi
1038
1039
1040	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1041	if [[ $queue = none ]]
1042	then
1043	case $host in
1044	(ibmb) if [[ $node_usage = shared ]]
1045	then
1046	queue=cshare
1047	else
1048	queue=csolo
1049	fi;;
1050	(ibmh) if [[ $node_usage = shared ]]
1051	then
1052	queue=cshare
1053	else
1054	queue=csolo
1055	fi;;
1056	(ibmy) queue=parallel;;
1057	(lctit) queue=default;;
1058	(nech) queue=none;;
1059	(neck) queue=P;;
1060	(unics) queue=unics;;
1061	esac
1062	fi
1063
1064
1065	# EVTL. NETCDF-UNTERSTUETZUNG SETZEN
1066	case $host in
1067	(decalpha) netcdf_support=true
1068	netcdf_path=/usr/local/netcdf-3.5.1;;
1069	(ibmb\|ibmh) netcdf_support=true
1070	netcdf_path=/aws/dataformats/netcdf-3.6.0-p1/64-32;;
1071	(ibms) netcdf_support=true
1072	netcdf_path=/applic/lib/NETCDF64;;
1073	(ibmy) netcdf_support=true
1074	netcdf_path=/usr1/users/raasch/pub/netcdf-3.6.0-p1;;
1075	(lcmuk) netcdf_support=true
1076	if [[ $scirocco = true ]]
1077	then
1078	netcdf_path=/opt/netcdf/3.6.2-beta4
1079	elif [[ $fimm = true ]]
1080	then
1081	netcdf_path=/local/netcdf
1082	else
1083	netcdf_path=/muksoft/packages/netcdf/linux
1084	fi;;
1085	(lctit) netcdf_support=true
1086	netcdf_path=/home2/usr5/mkanda/netcdf-3.6.2;;
1087	(nech) netcdf_support=true
1088	netcdf_path=/pool/SX-6/netcdf/netcdf-3.6.0-p1;;
1089	(neck) netcdf_support=true
1090	netcdf_path=/home/DSRC/NC/tatuyama/pub/netcdf-3.6.0-p1;;
1091	esac
1092
1093
1094	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1095	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1096	# ERMITTELN
1097	(( i = 0 ))
1098	while (( i < iin ))
1099	do
1100	(( i = i + 1 ))
1101	(( maxcycle = 0 ))
1102
1103	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1104	if [[ "${actionin[$i]}" = di ]]
1105	then
1106	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1107	# REM-MASCHINE AUSWERTEN
1108	eval filename=${pathin[$i]}/${endin[$i]}
1109	else
1110	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1111	# REM-MASCHINE AUSWERTEN
1112	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1113	fi
1114
1115	# PRUEFEN AUF VORHANDENSEIN
1116	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1117	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1118	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1119	then
1120	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1121	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1122	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1123	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1124	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1125	if [[ "${transin[$i]}" != "locopt" ]]
1126	then
1127	printf "\n\n +++ INPUT-file: "
1128	if [[ "${extin[$i]}" = "" ]]
1129	then
1130	printf "\n $filename"
1131	else
1132	printf "\n $filename.${extin[$i]}"
1133	fi
1134	printf "\n does not exist\n"
1135	locat=input; exit
1136	else
1137	transin[$i]="unavailable"
1138	fi
1139	else
1140
1141	# ZYKLUSNUMMER FESTSTELLEN
1142	ls -1 -d $filename > filelist 2>/dev/null
1143	ls -1 -d $filename.* >> filelist 2>/dev/null
1144	while read zeile
1145	do
1146	cycle=$(print $zeile \| cut -f2 -d".")
1147	if [[ "$cycle" = "$zeile" ]]
1148	then
1149	(( icycle = 0 ))
1150	elif [[ "$cycle" = "${extin[$i]}" ]]
1151	then
1152	(( icycle = 0 ))
1153	else
1154	(( icycle = $cycle ))
1155	fi
1156	if (( icycle > maxcycle ))
1157	then
1158	(( maxcycle = icycle ))
1159	file_to_be_used=$zeile
1160	fi
1161	done <filelist
1162	rm filelist
1163
1164	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1165	if (( maxcycle > 0 ))
1166	then
1167	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1168	then
1169	filename=${filename}.$maxcycle.${extin[$i]}
1170	else
1171	filename=${filename}.$maxcycle
1172	fi
1173	else
1174	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1175	then
1176	filename=${filename}.${extin[$i]}
1177	fi
1178	fi
1179
1180	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1181	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1182	absnamein[$i]=$filename
1183	if (( maxcycle > 0 ))
1184	then
1185	if [[ "${actionin[$i]}" = di ]]
1186	then
1187	frelin[$i]=${endin[$i]}.$maxcycle
1188	else
1189	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1190	fi
1191	else
1192	if [[ "${actionin[$i]}" = di ]]
1193	then
1194	frelin[$i]=${endin[$i]}
1195	else
1196	frelin[$i]=${afname}${endin[$i]}
1197	fi
1198	fi
1199
1200	fi
1201	done
1202
1203
1204	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1205	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1206	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1207	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1208	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1209	(( i = 0 ))
1210	while (( i < iout ))
1211	do
1212	(( i = i + 1 ))
1213	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1214	then
1215	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1216	then
1217	actionout[$i]=""
1218	elif [[ "${actionout[$i]}" = tra ]]
1219	then
1220	actionout[$i]=a
1221	fi
1222	(( maxcycle = 0 ))
1223	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1224	eval catalogname=${pathout[$i]}
1225	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1226	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1227	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1228	then
1229
1230	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1231	if cat /dev/null > $filename
1232	then
1233	rm $filename
1234	else
1235
1236	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1237	if [[ ! -d $catalogname ]]
1238	then
1239	if mkdir -p $catalogname
1240	then
1241	printf "\n\n *** directory:"
1242	printf "\n $catalogname"
1243	printf "\n was created\n"
1244	else
1245	printf "\n\n +++ OUTPUT-file:"
1246	printf "\n $filename"
1247	printf "\n cannot be created, because directory does not exist"
1248	printf "\n and cannot be created either"
1249	printf "\n"
1250	locat=output ; exit
1251	fi 2>/dev/null
1252	else
1253	printf "\n\n +++ OUTPUT-file:"
1254	printf "\n $filename"
1255	printf "\n cannot be created, although directory exists"
1256	printf "\n"
1257	locat=output ; exit
1258	fi
1259	fi 2>/dev/null
1260	else
1261
1262	# ZYKLUSNUMMER FESTSTELLEN
1263	ls -1 -d $filename > filelist 2>/dev/null
1264	ls -1 -d $filename.* >> filelist 2>/dev/null
1265	while read zeile
1266	do
1267	cycle=$(print $zeile \| cut -f2 -d".")
1268	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1269	then
1270	(( icycle = 1 ))
1271	else
1272	(( icycle = $cycle + 1 ))
1273	fi
1274	if (( icycle > maxcycle ))
1275	then
1276	(( maxcycle = icycle ))
1277	fi
1278	done <filelist
1279	rm filelist
1280	fi
1281
1282	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1283	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1284	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1285	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1286	if [[ "${actionout[$i]}" != a ]]
1287	then
1288	if (( maxcycle > 0 ))
1289	then
1290	filename=${filename}.$maxcycle
1291	if cat /dev/null > $filename
1292	then
1293	rm $filename
1294	else
1295	printf "\n +++ OUTPUT-file:"
1296	printf "\n $filename"
1297	printf "\n cannot be created"
1298	locat=output ; exit
1299	fi
1300	fi
1301	else
1302	(( maxcycle = maxcycle - 1 ))
1303	if (( maxcycle > 0 ))
1304	then
1305	filename=${filename}.$maxcycle
1306	fi
1307	fi
1308
1309	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1310	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1311	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1312	pathout[$i]=$filename
1313	if (( maxcycle > 0 ))
1314	then
1315	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1316	else
1317	frelout[$i]=${fname}${endout[$i]}
1318	fi
1319
1320	fi
1321	done
1322
1323
1324	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1325	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1326	# UEBERSETZT ZU WERDEN)
1327	if [[ "$mainprog" = "" && "$executable" = "" ]]
1328	then
1329	printf "\n +++ neither main program nor executable defined"
1330	locat=source; exit
1331	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1332	then
1333	printf "\n +++ main program as well as executable defined"
1334	locat=source; exit
1335	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1336	then
1337	do_compile=false
1338	fi
1339
1340
1341	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1342	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1343	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1344	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1345	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1346	then
1347
1348	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1349	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1350
1351	if [[ $restart_run != true ]]
1352	then
1353	rm -rf SOURCES_FOR_RUN_$fname
1354	mkdir SOURCES_FOR_RUN_$fname
1355	fi
1356
1357
1358	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1359	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1360	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1361	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1362	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1363	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1364	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1365	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1366	# GESAMMELT
1367	if [[ "$source_list" = WRITE_PERMIT ]]
1368	then
1369
1370	source_list=""
1371	cd $source_path
1372
1373
1374	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1375	Names=$(ls -1 *.f90 2>&1)
1376	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1377	Names=$(ls -1 *.F90 2>&1)
1378	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1379	Names=$(ls -1 *.F 2>&1)
1380	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1381	Names=$(ls -1 *.f 2>&1)
1382	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1383	Names=$(ls -1 *.c 2>&1)
1384	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1385
1386
1387	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1388	for dateiname in $Filenames
1389	do
1390	if [[ -w $dateiname ]]
1391	then
1392	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1393	then
1394	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1395	source_list=$source_list"$dateiname "
1396	fi
1397	fi
1398	done
1399
1400	cd - > /dev/null
1401
1402
1403	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1404	then
1405
1406	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1407	source_list=""
1408	cd $source_path
1409
1410
1411	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1412	if [[ ! -d .svn ]]
1413	then
1414	printf "\n\n +++ source directory"
1415	printf "\n \"$source_path\" "
1416	printf "\n is not under control of \"subversion\"."
1417	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1418	fi
1419
1420
1421	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1422	Filenames=""
1423	svn status > tmp_mrun
1424	while read line
1425	do
1426	firstc=`echo $line \| cut -c1`
1427	if [[ $firstc = M \|\| $firstc = "?" ]]
1428	then
1429	Name=`echo "$line" \| cut -c8-`
1430	extension=`echo $Name \| cut -d. -f2`
1431	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1432	then
1433	Filenames="$Filenames "$Name
1434	fi
1435	fi
1436	done < tmp_mrun
1437
1438
1439	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1440	for dateiname in $Filenames
1441	do
1442	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1443	source_list=$source_list"$dateiname "
1444	done
1445
1446	cd - > /dev/null
1447
1448
1449	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1450	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1451	# VORHANDEN
1452	elif [[ "$source_list" != "" && $restart_run != true ]]
1453	then
1454
1455	cd $source_path
1456
1457	for filename in $source_list
1458	do
1459
1460	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1461	if [[ $(print $filename \| grep -c "/") != 0 ]]
1462	then
1463	printf "\n +++ source code file: $filename"
1464	printf "\n must not contain (\"/\") "
1465	locat=source; exit
1466	fi
1467
1468	if [[ ! -f $filename ]]
1469	then
1470	printf "\n +++ source code file: $filename"
1471	printf "\n does not exist"
1472	locat=source; exit
1473	else
1474	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1475	fi
1476
1477	done
1478
1479	cd - > /dev/null
1480
1481	fi
1482
1483
1484	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1485	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1486	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1487	if [[ $restart_run != true ]]
1488	then
1489
1490	if [[ ! -f "$source_path/$mainprog" ]]
1491	then
1492	printf "\n\n +++ main program: $mainprog"
1493	printf "\n does not exist in source directory"
1494	printf "\n \"$source_path\"\n"
1495	locat=source; exit
1496	else
1497	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1498	then
1499	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1500	source_list=${mainprog}" $source_list"
1501	fi
1502	fi
1503	fi
1504
1505
1506	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1507	if [[ $restart_run != true && "$add_source_path" != "" ]]
1508	then
1509
1510	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1511	if [[ ! -d $add_source_path ]]
1512	then
1513	printf "\n\n +++ WARNING: additional source code directory"
1514	printf "\n \"$add_source_path\" "
1515	printf "\n does not exist or is not a directory."
1516	printf "\n No source code will be used from this directory!\n"
1517	add_source_path=""
1518	sleep 3
1519	else
1520
1521	cd $add_source_path
1522
1523	Names=$(ls -1 *.f90 2>&1)
1524	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1525	Names=$(ls -1 *.F90 2>&1)
1526	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1527	Names=$(ls -1 *.F 2>&1)
1528	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1529	Names=$(ls -1 *.f 2>&1)
1530	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1531	Names=$(ls -1 *.c 2>&1)
1532	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1533
1534	cd - > /dev/null
1535	cd SOURCES_FOR_RUN_$fname
1536
1537	for dateiname in $AddFilenames
1538	do
1539	if [[ -f $dateiname ]]
1540	then
1541	printf "\n +++ source code file \"$dateiname\" found in additional"
1542	printf "\n source code directory \"$add_source_path\" "
1543	printf "\n as well as in directory \"$source_path\"."
1544	locat=source; exit
1545	fi
1546
1547	cp $add_source_path/$dateiname .
1548	source_list="$source_list $dateiname"
1549
1550	# Default User-Interface von der Liste entfernen, falls Datei
1551	# ein User-Interface enthaelt
1552	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1553	then
1554	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1555	then
1556	rm -rf user_interface.f90
1557	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1558	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1559	printf "\n since a user-interface is found in file"
1560	printf "\n \"$add_source_path/$dateiname\" \n"
1561	sleep 3
1562	else
1563	printf "\n\n *** user-interface file \"$dateiname\" "
1564	printf "\n added to the files to be translated \n"
1565	sleep 3
1566	fi
1567	fi
1568	done
1569
1570	cd - > /dev/null
1571	fi
1572	fi
1573
1574
1575	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1576	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1577	if [[ $restart_run != true && -n $package_list ]]
1578	then
1579
1580	cd $source_path
1581
1582	for package in $package_list
1583	do
1584
1585	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1586
1587	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1588	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1589	# LIEFERT
1590	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1591
1592
1593	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1594	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1595	for source_list_name in $package_source_list
1596	do
1597	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1598	then
1599
1600	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1601	ending=`echo $source_list_name \| cut -f2 -d.`
1602	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1603	then
1604	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1605	source_list="$source_list $source_list_name"
1606	fi
1607	fi
1608	done
1609	done
1610
1611	cd - > /dev/null
1612	fi
1613
1614
1615	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1616	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1617	if [[ "$use_makefile" = true && "$restart_run" != true ]]
1618	then
1619	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1620	if [[ ! -f $makefile ]]
1621	then
1622	printf "\n +++ file \"$makefile\" does not exist"
1623	printf "\n provide this file or set \"use_makefile=false\" in configuration file\n"
1624	locat=make; exit
1625	else
1626	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1627	fi
1628	fi
1629
1630	fi # do_compile=true
1631
1632
1633	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1634	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1635	if [[ $do_compile = true ]]
1636	then
1637
1638	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1639	# ZUSAMMENSETZEN
1640	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1641	then
1642	PPOPTS=-Dibm=ibm
1643	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1644	then
1645	PPOPTS=-Dnec
1646	else
1647	PPOPTS=-D$localhost
1648	fi
1649	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1650	then
1651	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1=$cond1"
1652	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2=$cond2"
1653	if [[ $netcdf_support = true ]]
1654	then
1655	PPOPTS="$PPOPTS -Dnetcdf=netcdf"
1656	[[ $localhost != ibms ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit=netcdf_64bit"
1657	fi
1658	if [[ $localhost = ibmy ]]
1659	then
1660	PPOPTS="$PPOPTS -Dibmy_special=ibmy_special"
1661	fi
1662	else
1663	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1"
1664	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2"
1665	if [[ $netcdf_support = true ]]
1666	then
1667	PPOPTS="$PPOPTS -Dnetcdf"
1668	[[ $localhost != decalpha && $localhost != lctit ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit"
1669	fi
1670	fi
1671	if [[ -n $package_list ]]
1672	then
1673	for package in $package_list
1674	do
1675	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1676	then
1677	if [[ $package != "dvrp_graphics+1PE" ]]
1678	then
1679	PPOPTS="$PPOPTS -D$package=$package"
1680	else
1681	PPOPTS="$PPOPTS -Ddvrp_graphics"
1682	export use_seperate_pe_for_dvrp_output=true
1683	fi
1684	else
1685	if [[ $package != "dvrp_graphics+1PE" ]]
1686	then
1687	PPOPTS="$PPOPTS -D$package"
1688	else
1689	PPOPTS="$PPOPTS -Ddvrp_graphics"
1690	export use_seperate_pe_for_dvrp_output=true
1691	fi
1692	fi
1693	done
1694	fi
1695	if [[ -n $cpp_opts ]]
1696	then
1697	for popts in $cpp_opts
1698	do
1699	PPOPTS="$PPOPTS -D$popts"
1700	done
1701	fi
1702
1703	# -D ARGUMENTEN EINEN DOPPELTEN UNTERSTRICH VORANSTELLEN
1704	PPOPTS=`echo " $PPOPTS" \| sed 's/ -D/ -D__/g'`
1705
1706	# OPTION ZUM EINSCHALTEN DES PRAEPROZESSORS HINZUFUEGEN
1707	if [[ $host = decalpha ]]
1708	then
1709	C_PPOPTS="-cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION $PPOPTS"
1710	elif [[ $(echo $host \| cut -c1-3) = ibm ]]
1711	then
1712	# blanks in PPOPTS muessen durch "," ersetzt werden
1713	PPOPTS=`echo $PPOPTS \| sed 's/ -/,-/g'`
1714	C_PPOPTS="-qsuffix=cpp=f90 -WF,-DMPI_REAL=MPI_DOUBLE_PRECISION,$PPOPTS"
1715	elif [[ $host = lcmuk ]]
1716	then
1717	C_PPOPTS="$PPOPTS -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1718	elif [[ $host = lctit ]]
1719	then
1720	C_PPOPTS="$PPOPTS -Mpreprocess -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1721	elif [[ $(echo $host \| cut -c1-3) = nec ]]
1722	then
1723	C_PPOPTS="-Ep -DMPI_REAL=MPI_REAL8 -DMPI_2REAL=MPI_2REAL8 -DSCFFT=dzfft -DCSFFT=zdfft $PPOPTS"
1724	else
1725	C_PPOPTS="$PPOPTS"
1726	fi
1727
1728	else
1729
1730
1731	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1732	if [[ $do_remote = false ]]
1733	then
1734	if [[ ! -f $executable ]]
1735	then
1736	printf "\n +++ executable file: $executable"
1737	printf "\n does not exist"
1738	locat=executable; exit
1739	fi
1740	fi
1741	fi
1742
1743
1744	# JOBMODUS FESTSTELLEN
1745	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1746	then
1747	jobmo=BATCH
1748	else
1749	jobmo=INTERACTIVE
1750	fi
1751
1752
1753	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1754	# DURCH BENUTZER ANDERWEITIG VEREINBART
1755	if [[ "$compiler_name" = "" ]]
1756	then
1757	case $localhost in
1758	(unics) compiler_name=f77;;
1759	(lcmuk) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1760	then
1761	compiler_name=mpif90
1762	else
1763	compiler_name=ifc
1764	fi;;
1765	(lctit) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1766	then
1767	compiler_name=mpif90
1768	echo ">>> compiler=mpif90"
1769	else
1770	compiler_name=pgf95
1771	echo ">>> compiler=pgf95"
1772	fi;;
1773	(nech) compiler_name=sxmpif90;;
1774	(decalpha) compiler_name=f95;;
1775	(ibm\|ibmb\|ibmh\|ibms\|ibmy) compiler_name=mpxlf95_r;;
1776	(*) printf "\n +++ unknown host name: $localhost \n";
1777	locat=localhost; exit;;
1778	esac
1779	fi
1780
1781
1782	# COMPILER AUF NECK UEBERSCHREIBEN
1783	[[ $localhost = neck ]] && compiler_name=mpif90
1784
1785
1786
1787	# PRAEPROZESSOR-PFAD BESTIMMEN
1788	case $localhost in
1789	(decalpha\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|unics) praeproc=cpp;;
1790	esac
1791
1792
1793	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1794	kennung=$RANDOM
1795	if [[ "$tmp_user_catalog" = "" ]]
1796	then
1797	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1798	then
1799	tmp_user_catalog=$TMPDIR
1800	elif [[ $localhost = nech ]]
1801	then
1802	tmp_user_catalog=$WRKSHR
1803	else
1804	tmp_user_catalog=/tmp
1805	fi
1806	fi
1807	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1808
1809
1810	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1811	# BESTIMMEN
1812	if [[ "$tmp_data_catalog" = "" ]]
1813	then
1814	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1815	then
1816	tmp_data_catalog=$WORK/mrun_restart_data
1817	elif [[ $localhost = nech ]]
1818	then
1819	tmp_data_catalog=$WRKSHR/mrun_restart_data
1820	else
1821	tmp_data_catalog=/tmp/mrun_restart_data
1822	fi
1823	fi
1824
1825
1826	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1827	# ERSETZEN
1828	if [[ $do_remote = false && $do_compile = true ]]
1829	then
1830	eval fopts=\"$fopts\"
1831	eval lopts=\"$lopts\"
1832	fi
1833
1834
1835
1836	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1837	FOPTS="$fopts"
1838	LOPTS="$lopts"
1839	ROPTS="$ropts"
1840	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lctit ) && -n $numprocs ]]
1841	then
1842	XOPT="-X $numprocs"
1843	fi
1844
1845
1846	# BEI VERWENDUNG VON DVRP-SOFTWARE MUSS ENTSPECHENDE GRAFIK-BIBLIOTHEK
1847	# MIT EINGEBUNDEN WERDEN
1848	if [[ -n $package_list ]]
1849	then
1850	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1851	then
1852
1853	# DVRP-GRAFIK GIBT ES NUR AUF DER IBM AM HLRN, AUF NECH/NECK UND
1854	# DEM NOTEBOOK SCIROCCO
1855	if [[ $host != ibmh && $host != nech && $host != neck && $host != lcmuk && "$local_compile" != true ]]
1856	then
1857	printf "\n"
1858	printf "\n +++ option -p with package \"dvrp_graphics\" only allowed on nech and ibmh"
1859	locat=parameter; exit
1860	fi
1861	if [[ $host = ibmh ]]
1862	then
1863	if [[ $cond1 = debug \|\| $cond2 = debug ]]
1864	then
1865	FOPTS="-I/home/h/hzazchmi/lib/debug $FOPTS"
1866	LOPTS="$LOPTS -L/home/h/hzazchmi/lib/debug -lDVRP2 -lftp"
1867	else
1868	FOPTS="-I/home/h/nikevita/lib_stable/optimize $FOPTS"
1869	LOPTS="$LOPTS -L/home/h/nikevita/lib_stable/optimize -lDVRP2 -lftp"
1870	fi
1871	elif [[ $host = nech ]]
1872	then
1873	FOPTS="-I/import/ds9b/ipf2/b/b323014/lib/optimize $FOPTS"
1874	LOPTS="$LOPTS -L/import/ds9b/ipf2/b/b323014/lib/optimize -lDVRP2 -lftp"
1875	elif [[ $host = neck ]]
1876	then
1877	FOPTS="-I/home/DSRC/NC/tatuyama/pub/dvrp $FOPTS"
1878	LOPTS="$LOPTS -L/home/DSRC/NC/tatuyama/pub/dvrp -lDVRP2 -lftp"
1879	elif [[ $host = lcmuk ]]
1880	then
1881	FOPTS="-I/usr/local/lib/dvrp/optimize $FOPTS"
1882	LOPTS="$LOPTS -L/usr/local/lib/dvrp/optimize -lDVRP2 -lftp"
1883	fi
1884	fi
1885	fi
1886
1887
1888	# EVTL. EINBINDEN DER NETCDF-BIBLIOTHEK
1889	if [[ $netcdf_support = true ]]
1890	then
1891	case $host in
1892	(decalpha) FOPTS="-I${netcdf_path}/include $FOPTS"
1893	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1894	(ibmb\|ibmh) FOPTS="-I ${netcdf_path}/include-64 $FOPTS"
1895	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1896	(ibms) FOPTS="-I /applic/netcdf64/src/f90 $FOPTS"
1897	LOPTS="$LOPTS -L${netcdf_path} -lnetcdf";;
1898	(ibmy) FOPTS="-I ${netcdf_path}/include $FOPTS"
1899	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1900	(lcmuk\|nech\|neck) FOPTS="-I ${netcdf_path}/include $FOPTS"
1901	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1902	(lctit) FOPTS="-I ${netcdf_path}/include $FOPTS"
1903	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1904
1905	esac
1906	fi
1907
1908	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1909	# GRAMM BENOETIGT
1910	done=false
1911	while [[ $done = false ]]
1912	do
1913	cputime=$cpumax
1914	if (( $cputime == 0 ))
1915	then
1916	printf "\n +++ cpu-time is undefined"
1917	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1918	printf "\n >>> "
1919	read cputime 1>/dev/null 2>&1
1920	else
1921	done=true
1922	fi
1923	cpumax=$cputime
1924	done
1925
1926	(( minuten = cputime / 60 ))
1927	(( sekunden = cputime - minuten * 60 ))
1928
1929
1930	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1931	if [[ $do_batch = true ]]
1932	then
1933	done=false
1934	while [[ $done = false ]]
1935	do
1936	if (( memory == 0 ))
1937	then
1938	printf "\n +++ memory demand is undefined"
1939	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1940	printf "\n >>> "
1941	read memory 1>/dev/null 2>&1
1942	else
1943	done=true
1944	fi
1945	done
1946	fi
1947
1948
1949	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1950	if [[ $do_remote = true && -z $remote_username ]]
1951	then
1952	while [[ -z $remote_username ]]
1953	do
1954	printf "\n +++ username on remote host \"$host\" is undefined"
1955	printf "\n >>> Please type username:"
1956	printf "\n >>> "
1957	read remote_username
1958	done
1959	mc="$mc -u$remote_username"
1960	fi
1961
1962	###########################################################################
1963	# HEADER-AUSGABE
1964	###########################################################################
1965
1966
1967	calltime=$(date)
1968	printf "\n"
1969	# [[ $silent = false ]] && clear
1970	printf "#--------------------------------------------------------------# \n"
1971	printf "\| $version$calltime \| \n"
1972	printf "\| \| \n"
1973	spalte1="called on:"; spalte2=$localhost_realname
1974	printf "\| $spalte1$spalte2 \| \n"
1975	if [[ $local_compile = false ]]
1976	then
1977	if [[ $do_remote = true ]]
1978	then
1979	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1980	else
1981	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1982	fi
1983	else
1984	spalte1="compiling test only!"; spalte2=""
1985	fi
1986	printf "\| $spalte1$spalte2 \| \n"
1987	if [[ -n $numprocs ]]
1988	then
1989	spalte1="number of PEs:"; spalte2=$numprocs
1990	printf "\| $spalte1$spalte2 \| \n"
1991	fi
1992	if [[ -n $tasks_per_node ]]
1993	then
1994	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1995	printf "\| $spalte1$spalte2 \| \n"
1996	fi
1997	if [[ $threads_per_task != 1 ]]
1998	then
1999	spalte1="threads per task:"; spalte2="$threads_per_task"
2000	printf "\| $spalte1$spalte2 \| \n"
2001	fi
2002	printf "\| \| \n"
2003	if [[ $do_compile = true ]]
2004	then
2005	spalte1=cpp-directives:; spalte2=$C_PPOPTS
2006	printf "\| $spalte1$spalte2 \| \n"
2007	zeile=$(echo "$C_PPOPTS" \| cut -c41-)
2008	while [[ "$zeile" != "" ]]
2009	do
2010	spalte1=""
2011	spalte2=$zeile
2012	printf "\| $spalte1$spalte2 \| \n"
2013	zeile=$(echo "$zeile" \| cut -c41-)
2014	done
2015
2016	spalte1=compiler-options:; spalte2="$FOPTS $MODULE_OPTIONS"
2017	printf "\| $spalte1$spalte2 \| \n"
2018	zeile=$(echo "$FOPTS $MODULE_OPTIONS" \| cut -c41-)
2019	while [[ "$zeile" != "" ]]
2020	do
2021	spalte1=""
2022	spalte2=$zeile
2023	printf "\| $spalte1$spalte2 \| \n"
2024	zeile=$(echo "$zeile" \| cut -c41-)
2025	done
2026
2027	spalte1=linker-options:; spalte2=$LOPTS
2028	printf "\| $spalte1$spalte2 \| \n"
2029	zeile=$(echo "$LOPTS" \| cut -c41-)
2030	while [[ "$zeile" != "" ]]
2031	do
2032	spalte1=""
2033	spalte2=$zeile
2034	printf "\| $spalte1$spalte2 \| \n"
2035	zeile=$(echo "$zeile" \| cut -c41-)
2036	done
2037
2038	spalte1="main program":; spalte2=$mainprog
2039	printf "\| $spalte1$spalte2 \| \n"
2040	if [[ "$use_makefile" = true ]]
2041	then
2042	spalte1="using \"make\" for com"; spalte2="piling and linking"
2043	printf "\| $spalte1$spalte2 \| \n"
2044	fi
2045	# if [[ $vtk_graphics = true ]]
2046	# then
2047	# spalte1=""; spalte2="wird in C++ - Programm eingebunden (vtk)"
2048	# printf "\| $spalte1$spalte2 \| \n"
2049	# fi
2050	else
2051	spalte1=executable:; spalte2=$executable
2052	printf "\| $spalte1$spalte2 \| \n"
2053	fi
2054	printf "\| \| \n"
2055	spalte1="base name of files":; spalte2=$fname
2056	printf "\| $spalte1$spalte2 \| \n"
2057	if [[ $fname != $afname ]]
2058	then
2059	spalte1="base name of input files":; spalte2=$afname
2060	printf "\| $spalte1$spalte2 \| \n"
2061	fi
2062	spalte1="INPUT control list":; spalte2=$input_list
2063	printf "\| $spalte1$spalte2 \| \n"
2064	spalte1="OUTPUT control list":; spalte2=$output_list
2065	printf "\| $spalte1$spalte2 \| \n"
2066
2067	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2068	then
2069	spalte1="memory demand / PE":; spalte2="$memory MB"
2070	printf "\| $spalte1$spalte2 \| \n"
2071	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2072	printf "\| $spalte1$spalte2 \| \n"
2073	fi
2074
2075	if [[ $do_compile = true ]]
2076	then
2077	printf "\| \| \n"
2078	printf "\| Files to be compiled: \| \n"
2079	zeile=$source_list
2080	while [[ "$zeile" != "" ]]
2081	do
2082	spalte3=$zeile
2083	printf "\| $spalte3 \| \n"
2084	zeile=$(echo "$zeile" \| cut -c61-)
2085	done
2086	fi
2087	printf "#--------------------------------------------------------------#"
2088
2089
2090
2091	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2092	if [[ $do_trace = true ]]
2093	then
2094	(( i = 0 ))
2095	while (( i < iin ))
2096	do
2097	(( i = i + 1 ))
2098	if (( i == 1 ))
2099	then
2100	printf "\n\n >>> INPUT-file assignments:\n"
2101	fi
2102	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2103	done
2104	(( i = 0 ))
2105	while (( i < iout ))
2106	do
2107	(( i = i + 1 ))
2108	if (( i == 1 ))
2109	then
2110	printf "\n\n >>> OUTPUT-file assignments:\n"
2111	fi
2112	printf "\n ${localout[$i]} : ${pathout[$i]}"
2113	done
2114	(( i = 0 ))
2115	while (( i < iic ))
2116	do
2117	(( i = i + 1 ))
2118	if (( i == 1 ))
2119	then
2120	printf "\n\n >>> INPUT-commands:\n"
2121	fi
2122	printf "\n ${in_command[$i]}"
2123	done
2124	(( i = 0 ))
2125	while (( i < ioc ))
2126	do
2127	(( i = i + 1 ))
2128	if (( i == 1 ))
2129	then
2130	printf "\n\n >>> OUTPUT-commands:\n"
2131	fi
2132	printf "\n ${out_command[$i]}"
2133	done
2134	fi
2135
2136
2137	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2138	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2139	then
2140	antwort=dummy
2141	printf "\n\n"
2142	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2143	do
2144	printf " >>> everything o.k. (y/n) ? "
2145	read antwort
2146	done
2147	if [[ $antwort = n \|\| $antwort = N ]]
2148	then
2149	locat=user_abort; (( iec = 0 )); exit
2150	fi
2151	if [[ $do_batch = true ]]
2152	then
2153	printf " >>> batch-job will be created and submitted"
2154	else
2155	if [[ $local_compile = false ]]
2156	then
2157	printf " >>> MRUN will now continue to execute on this machine"
2158	else
2159	printf " >>> a test compilation will now be carried out on this machine"
2160	fi
2161	fi
2162	fi
2163
2164
2165
2166
2167	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2168	# CHENDE AKTIONEN DURCHGEFUEHRT
2169	if [[ $do_batch = false ]]
2170	then
2171
2172
2173	# TEMPORAEREN KATALOG ERZEUGEN
2174	mkdir -p $TEMPDIR
2175	chmod go+rx $TEMPDIR
2176	tmpcreate=true
2177
2178
2179	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2180	# TEMPORAERES VERZEICHNIS KOPIEREN
2181	if [[ $do_compile = true ]]
2182	then
2183
2184	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2185	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2186	if [[ $localhost = nech ]]
2187	then
2188	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2189	if mkdir -p $TEMPDIR_COMPILE
2190	then
2191	printf "\n *** \"$TEMPDIR_COMPILE\" "
2192	printf "\n is generated as temporary directory for cross compiling\n"
2193	else
2194	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2195	printf "\n needed for cross compilation failed"
2196	locat=compile
2197	exit
2198	fi
2199	else
2200	TEMPDIR_COMPILE=$TEMPDIR
2201	fi
2202
2203	if [[ "$use_makefile" = true ]]
2204	then
2205
2206	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2207	line=""
2208	grep "%depository_path" $config_file > tmp_mrun
2209	while read line
2210	do
2211	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2212	then
2213	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2214	then
2215	global_depository_path=`echo $line \| cut -d" " -s -f2`
2216	fi
2217	fi
2218	done < tmp_mrun
2219
2220	line=""
2221	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2222	while read line
2223	do
2224	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2225	then
2226	local_depository_path=`echo $line \| cut -d" " -s -f2`
2227	fi
2228	done < tmp_mrun
2229
2230	if [[ "$local_depository_path" = "" ]]
2231	then
2232	if [[ "$global_depository_path" != "" ]]
2233	then
2234	local_depository_path=$global_depository_path
2235	else
2236	printf "\n\n +++ no depository path found in configuration file"
2237	printf "\n for local host \"$localhost\" "
2238	printf "\n please set \"\%depository_path\" in configuration file\n"
2239	locat=config_file; exit
2240	fi
2241	fi
2242	eval local_depository_path=$local_depository_path
2243
2244	basename=`print $mainprog \| cut -f1 -d"."`
2245	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2246	if [[ ! -f $make_depository ]]
2247	then
2248	printf "\n"
2249	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2250	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2251	else
2252	cp $make_depository $TEMPDIR_COMPILE
2253	cd $TEMPDIR_COMPILE
2254	tar -xf $make_depository > /dev/null 2>&1
2255	cd - > /dev/null
2256	fi
2257
2258	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2259
2260	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2261	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2262	# MAKEFILE EINTRAGEN
2263	cd $TEMPDIR_COMPILE
2264	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2265	if [[ "$interface_file" != "" ]]
2266	then
2267	interface_file=`echo $interface_file \| cut -d"." -f1`
2268	mv Makefile Makefile_old
2269	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2270	fi
2271	cd - > /dev/null
2272	fi
2273	else
2274	cp $executable ${TEMPDIR}/a.out
2275	fi
2276
2277
2278	# WECHSEL IN TEMPORAEREN KATALOG
2279	cd $TEMPDIR
2280	printf "\n *** changed to temporary directory: $TEMPDIR"
2281
2282
2283	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2284	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2285	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2286	# ERMITTELN
2287	(( i = 0 ))
2288	while (( i < iout ))
2289	do
2290	(( i = i + 1 ))
2291	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2292	then
2293	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2294	else
2295	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2296	fi
2297	done
2298
2299
2300	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2301	if [[ $do_compile = true ]]
2302	then
2303
2304
2305	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2306	if [[ "$use_makefile" = true ]]
2307	then
2308	printf "\n\n\n *** compilation starts \n$striche\n"
2309	printf " *** compilation with make using following options:\n"
2310	printf " compilername: $compiler_name\n"
2311	printf " options: $FOPTS\n"
2312	printf " preprocessor-directives: $C_PPOPTS \n"
2313	printf " linker-options: $LOPTS \n"
2314	printf " source code files: $source_list \n"
2315
2316	if [[ $localhost = nech ]]
2317	then
2318	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$C_PPOPTS\" F90FLAGS=\"$FOPTS\" LDFLAGS=\"$LOPTS\" "
2319	cp $TEMPDIR_COMPILE/a.out .
2320	[[ $? != 0 ]] && compile_error=true
2321	rm -rf $TEMPDIR_COMPILE
2322	else
2323	make -f Makefile PROG=a.out F90=$compiler_name COPT="$C_PPOPTS" F90FLAGS="$FOPTS" LDFLAGS="$LOPTS"
2324	fi
2325
2326	# UEBERSETZUNG "VON HAND" (OHNE MAKE)
2327	else
2328
2329
2330	# UEBERSETZUNG DER QUELLTEXT-DATEIEN UND DES HAUPTPROGRAMMS
2331	# $CPPOPTS FUER CPP-PRAEPROZESSOR WURDEN OBEN BESTIMMT
2332	printf "\n\n\n *** compilation starts \n$striche\n"
2333
2334
2335	# VORWEG EVTL. UEBERSETZUNG VON PROGRAMMTEILEN MIT SPEZIELLEN
2336	# COMPILERN UND/ODER COMPILEROPTIONEN. DIESE WERDEN BEI DER SPAETEREN
2337	# EIGENTLICHEN UEBERSETZUNG ALS OBJECT-FILES EINGEBUNDEN
2338	new_source_list=""
2339	for filename in $source_list
2340	do
2341
2342	basename=`print $filename \| cut -f1 -d"."`
2343
2344	# EVTL. SPEZIELLEN COMPILER FUER UP BESTIMMEN
2345	comp_var=$(eval echo \$comp_$basename) # \$ liefert evtl. fuer source alternativ vereinbarten Compiler
2346	comp_opt_var=$(eval echo \$$basename) # \$$ liefert evtl. fuer source vereinbarte Compiler-Environment-Variable
2347
2348	if [[ "$comp_var" = "" && "$comp_opt_var" = "" ]]
2349	then
2350	new_source_list="$new_source_list "$filename
2351	else
2352
2353	if [[ "$comp_var" = "" ]]
2354	then
2355	SPECIAL_COMPILER=$compiler_name
2356	else
2357	SPECIAL_COMPILER=$comp_var
2358	fi
2359
2360	if [[ "$comp_opt_var" = "" ]]
2361	then
2362	SPECIAL_FOPTS=$FOPTS
2363	else
2364	SPECIAL_FOPTS="$parallel_options $(eval echo \$$comp_opt_var)"
2365	fi
2366
2367	printf " *** compiling of $filename with special compiler call: $SPECIAL_COMPILER $CPPOPTS -c $SPECIAL_FOPTS \n"
2368	$SPECIAL_COMPILER $C_PPOPTS -c $SPECIAL_FOPTS $MODULE_OPTIONS $filename
2369	if [[ $? != 0 ]]
2370	then
2371	printf "\n +++ compiling error occured"
2372	locat=compile
2373	exit
2374	fi
2375	new_source_list="$new_source_list "${basename}.o
2376	fi
2377	done
2378	source_list="$new_source_list"
2379
2380
2381	# EIGENTLICHE UEBERSETZUNG MIT DEN NORMALEN OPTIONEN
2382	printf " *** compilation with standard options: $compiler_name $FOPTS $MODULE_OPTIONS \n"
2383	printf " preprocessor-directives: $C_PPOPTS \n"
2384	printf " linker-options: $LOPTS \n"
2385	printf " source code files: $source_list \n"
2386
2387	$compiler_name $C_PPOPTS $FOPTS $MODULE_OPTIONS $LOPTS $source_list
2388
2389	fi
2390	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2391	then
2392	printf "\n +++ error occured while compiling or linking"
2393	locat=compile
2394	exit
2395	else
2396	printf "$striche\n *** compilation finished \n"
2397	fi
2398	fi
2399
2400
2401	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2402	if [[ $local_compile = true ]]
2403	then
2404	cd $HOME
2405	rm -rf $TEMPDIR
2406	locat=local_compile; exit
2407	fi
2408
2409
2410	# BEREITSTELLEN DER INPUT-DATEIEN
2411	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2412	(( i = 0 ))
2413	while (( i < iin ))
2414	do
2415	(( i = i + 1 ))
2416	if (( i == 1 ))
2417	then
2418	printf "\n\n *** providing INPUT-files:\n$striche"
2419	fi
2420
2421
2422	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2423	if [[ "${transin[$i]}" = unavailable ]]
2424	then
2425	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2426	then
2427	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2428	printf "\n is not available!"
2429	else
2430	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2431	printf "\n is not available!"
2432	fi
2433	continue
2434	fi
2435
2436	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2437	files_for_pes=false; datentyp=file
2438	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2439	then
2440	files_for_pes=true; datentyp=directory
2441	actionin[$i]=""
2442	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2443	then
2444	actionin[$i]=""
2445	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2446	then
2447	files_for_pes=true; datentyp=directory
2448	actionin[$i]="ar"
2449	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2450	then
2451	actionin[$i]="ar"
2452	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2453	then
2454	files_for_pes=true; datentyp=directory
2455	actionin[$i]="fl"
2456	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2457	then
2458	actionin[$i]="fl"
2459	fi
2460
2461	if [[ $files_for_pes = true ]]
2462	then
2463	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2464	else
2465	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2466	fi
2467
2468	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2469	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2470	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2471	# SERVER ZU HOLEN
2472	if [[ "${actionin[$i]}" = fl ]]
2473	then
2474	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2475	if [[ $files_for_pes = false ]]
2476	then
2477	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2478	then
2479	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2480	got_tmp[$i]=true
2481	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2482	then
2483	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2484	printf "\n *** trying to use backup copy in \"$WORK\" "
2485	cp $WORK/${frelin[$i]} ${localin[$i]}
2486	else
2487	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2488	printf "\n or \"$tmp_data_catalog\" does not exist!"
2489	printf "\n *** trying to get copy from archive"
2490	actionin[$i]=ar
2491	fi
2492	else
2493	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2494	then
2495	mkdir ${localin[$i]}
2496	ln $tmp_data_catalog/${frelin[$i]}/* ${localin[$i]}
2497	got_tmp[$i]=true
2498	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2499	then
2500	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2501	printf "\n *** trying to use backup copy in \"$WORK\" "
2502	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2503	else
2504	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2505	printf "\n or \"$tmp_data_catalog\" does not exist!"
2506	printf "\n *** trying to get copy from archive"
2507	actionin[$i]=ar
2508	fi
2509	fi
2510	fi
2511
2512
2513	# DATEI LIEGT AUF ARCHIV-SERVER
2514	if [[ "${actionin[$i]}" = ar ]]
2515	then
2516
2517	if [[ $files_for_pes = false ]]
2518	then
2519	printf "\n file will be restored from archive-system ($archive_system)!"
2520	else
2521	printf "\n directory will be restored from archive-system ($archive_system)!"
2522	fi
2523
2524	file_restored=false
2525
2526	if [[ $archive_system = asterix ]]
2527	then
2528	do_stagein=true
2529	(( stagein_anz = 0 ))
2530	while [[ $do_stagein = true ]]
2531	do
2532	if [[ $files_for_pes = false ]]
2533	then
2534	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2535	else
2536	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2537	fi
2538	cat STAGEIN_OUTPUT
2539	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2540	then
2541	file_restored=true
2542	do_stagein=false
2543	else
2544	(( stagein_anz = stagein_anz + 1 ))
2545	if (( stagein_anz == 10 ))
2546	then
2547	printf "\n +++ stagein stoped after 10 tries"
2548	locat=stage
2549	exit
2550	fi
2551	printf "\n +++ restoring from archive failed, trying again:"
2552	sleep 900
2553	fi
2554	done
2555	elif [[ $archive_system = DMF ]]
2556	then
2557	if [[ $files_for_pes = false ]]
2558	then
2559	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2560	locat=DMF
2561	exit
2562	else
2563	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2564	cp -r $ARCHIVE/${frelin[$i]} $PWD
2565	file_restored=true
2566	fi
2567	elif [[ $archive_system = tivoli ]]
2568	then
2569	if [[ $files_for_pes = false ]]
2570	then
2571	if [[ $localhost = ibmh ]]
2572	then
2573	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2574	else
2575	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2576	fi
2577	else
2578	(( inode = 0 ))
2579	while (( inode < nodes ))
2580	do
2581	if [[ $localhost = ibmh ]]
2582	then
2583	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2584	else
2585	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2586	fi
2587	(( inode = inode + 1 ))
2588	done
2589	fi
2590	file_restored=true
2591	elif [[ $archive_system = ut ]]
2592	then
2593	if [[ $files_for_pes = false ]]
2594	then
2595	cp $UT/${frelin[$i]} .
2596	else
2597	(( inode = 0 ))
2598	while (( inode < nodes ))
2599	do
2600	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2601	(( inode = inode + 1 ))
2602	done
2603	fi
2604	file_restored=true
2605	else
2606	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2607	locat=rearchive
2608	exit
2609	fi
2610
2611	if [[ $file_restored = true ]]
2612	then
2613
2614	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2615	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2616	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2617	if [[ $files_for_pes = false ]]
2618	then
2619	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2620	else
2621	mkdir $tmp_data_catalog/${frelin[$i]}
2622	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2623	fi
2624	got_tmp[$i]=true
2625
2626	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2627	mv ${frelin[$i]} ${localin[$i]}
2628
2629	fi
2630	fi
2631
2632
2633	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2634	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2635	then
2636
2637	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2638	then
2639
2640	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2641	printf "\n file will be provided for $numprocs processors"
2642	mkdir ${localin[$i]}
2643	ival=$numprocs
2644	(( ii = 0 ))
2645	while (( ii <= ival-1 ))
2646	do
2647	if (( ii < 10 ))
2648	then
2649	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2650	elif (( ii < 100 ))
2651	then
2652	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2653	elif (( ii < 1000 ))
2654	then
2655	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2656	else
2657	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2658	fi
2659	(( ii = ii + 1 ))
2660	done
2661
2662	else
2663
2664	if [[ $files_for_pes = true ]]
2665	then
2666
2667	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2668	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2669	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2670	# PER MOVE UMBENANNT WERDEN
2671	printf "\n providing $numprocs files for the respective processors"
2672	mkdir ${localin[$i]}
2673	cp -r ${absnamein[$i]}/* ${localin[$i]}
2674
2675	else
2676	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2677	cp ${absnamein[$i]} ${localin[$i]}
2678	fi
2679	fi
2680	fi
2681
2682	done
2683	if (( i != 0 ))
2684	then
2685	printf "\n$striche\n *** all INPUT-files provided \n"
2686	fi
2687
2688
2689	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2690	# LESEN VON PALM)
2691	cat > ENVPAR << %%END%%
2692	&envpar run_identifier = '$fname', host = '$localhost',
2693	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2694	maximum_cpu_time_allowed = ${cpumax}. /
2695
2696	%%END%%
2697
2698
2699	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2700	(( i = 0 ))
2701	while (( i < iic ))
2702	do
2703	(( i = i + 1 ))
2704	if (( i == 1 ))
2705	then
2706	printf "\n\n *** execution of INPUT-commands:\n$striche"
2707	fi
2708	printf "\n >>> ${in_command[$i]}"
2709	eval ${in_command[$i]}
2710	if (( i == iic ))
2711	then
2712	printf "\n$striche\n"
2713	fi
2714	done
2715
2716
2717	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2718	cpurest=${cpumax}.
2719
2720
2721	# PROGRAMMSTART
2722	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2723	PATH=$PATH:$TEMPDIR
2724
2725	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2726	then
2727	if [[ "$ENVIRONMENT" = BATCH ]]
2728	then
2729	printf "\n +++ debug is allowed in interactive mode only"
2730	locat=debug
2731	exit
2732	fi
2733	if [[ $localhost = decalpha ]]
2734	then
2735	dxladebug a.out
2736	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2737	then
2738
2739	# SETUP THE IBM MPI ENVIRONMENT
2740	export MP_SHARED_MEMORY=yes
2741	export AIXTHREADS_SCOPE=S
2742	export OMP_NUM_THREADS=$threads_per_task
2743	export AUTHSTATE=files
2744	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2745
2746	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2747	export MP_ADAPTER_USE=shared
2748	export MP_CPU_USE=multiple
2749	export MP_TIMEOUT=1200
2750
2751	unset MP_TASK_AFFINITY
2752
2753	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2754	#(( ii = 1 ))
2755	#while (( ii <= $numprocs ))
2756	#do
2757	# echo $localhost_realname >> hostfile
2758	# (( ii = ii + 1 ))
2759	#done
2760	#export MP_HOSTFILE=hostfile
2761
2762	if [[ "$LOADLBATCH" = yes ]]
2763	then
2764	totalview poe a.out $ROPTS
2765	else
2766	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2767	export TVDSVRLAUNCHCMD=ssh
2768	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2769	fi
2770	else
2771	printf "\n +++ no debug available on \"$localhost\" "
2772	printf "\n or not implemented in mrun so far"
2773	locat=debug
2774	exit
2775	fi
2776	else
2777	if [[ -n $numprocs ]]
2778	then
2779
2780	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2781	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2782	then
2783	# SETUP THE IBM MPI ENVIRONMENT
2784	export MP_SHARED_MEMORY=yes
2785	export AIXTHREAD_SCOPE=S
2786	export OMP_NUM_THREADS=$threads_per_task
2787	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2788	export AUTHSTATE=files
2789	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2790	# export MP_PRINTENV=yes
2791
2792	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2793	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2794	export MP_WAIT_MODE=poll
2795	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2796	# export MP_EAGER_LIMIT=65535
2797
2798	# # TESTWEISE FUER TURBOMPI (JAN 05)
2799	# export MPJ_MTAB=128
2800	# export MPJ_ALLTOALL=1
2801	# export MPJ_ALLTOALLV=1
2802
2803	if [[ "$LOADLBATCH" = yes ]]
2804	then
2805	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2806	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2807	then
2808	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS > aout_output 2>&1
2809	else
2810	poe ./a.out $ROPTS > aout_output 2>&1
2811	fi
2812	else
2813	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2814	then
2815	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS > aout_output 2>&1
2816	elif [[ $localhost = ibmy ]]
2817	then
2818	if [[ -f $hostfile ]]
2819	then
2820	cp $hostfile hostfile
2821	else
2822	(( ii = 1 ))
2823	while (( ii <= $numprocs ))
2824	do
2825	echo $localhost_realname >> hostfile
2826	(( ii = ii + 1 ))
2827	done
2828	fi
2829	export MP_HOSTFILE=hostfile
2830	./a.out -procs $tasks_per_node $ROPTS > aout_output 2>&1
2831	else
2832	if [[ "$host_file" = "" ]]
2833	then
2834	printf "\n +++ no hostfile given in configuration file"
2835	locat=config_file
2836	exit
2837	else
2838	eval host_file=$host_file
2839	fi
2840	export MP_HOSTFILE=$host_file
2841	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS > aout_output 2>&1
2842	fi
2843	fi
2844	elif [[ $host = nech \|\| $host = neck ]]
2845	then
2846	(( ii = nodes ))
2847	if [[ $ii = 1 ]]
2848	then
2849	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2850	export MPIPROGINF=YES
2851	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2852	echo "*** execution on single node with mpirun"
2853	mpirun -np $numprocs ./a.out $ROPTS > aout_output 2>&1
2854	else
2855	(( i = 0 ))
2856	while (( i < ii ))
2857	do
2858	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2859	(( i = i + 1 ))
2860	done
2861
2862	echo "#!/bin/sh" > mpi_exec_shell
2863	echo " " >> mpi_exec_shell
2864	echo "set -u" >> mpi_exec_shell
2865	echo "F_ERRCNT=0" >> mpi_exec_shell
2866	echo "MPIPROGINV=YES" >> mpi_exec_shell
2867	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2868	echo "cpurest=$cpurest" >> mpi_exec_shell
2869	echo "fname=$fname" >> mpi_exec_shell
2870	echo "localhost=$localhost" >> mpi_exec_shell
2871	echo "return_addres=$return_addres" >> mpi_exec_shell
2872	echo "return_username=$return_username" >> mpi_exec_shell
2873	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2874	echo "write_binary=$write_binary" >> mpi_exec_shell
2875	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2876	echo " " >> mpi_exec_shell
2877	echo "export F_ERRCNT" >> mpi_exec_shell
2878	echo "export MPIPROGINV" >> mpi_exec_shell
2879	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2880	echo "export cpurest" >> mpi_exec_shell
2881	echo "export fname" >> mpi_exec_shell
2882	echo "export localhost" >> mpi_exec_shell
2883	echo "export return_addres" >> mpi_exec_shell
2884	echo "export return_username" >> mpi_exec_shell
2885	echo "export tasks_per_node" >> mpi_exec_shell
2886	echo "export write_binary" >> mpi_exec_shell
2887	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2888	echo " " >> mpi_exec_shell
2889	echo "exec ./a.out > aout_output 2>&1" >> mpi_exec_shell
2890
2891	chmod u+x mpi_exec_shell
2892	export MPIPROGINF=YES
2893	mpirun -f multinode_config &
2894	wait
2895
2896	fi
2897	elif [[ $host = lcmuk ]]
2898	then
2899
2900	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2901	# DOES NOT EXIST
2902	if [[ -f $hostfile ]]
2903	then
2904	cp $hostfile hostfile
2905	else
2906	(( ii = 1 ))
2907	while (( ii <= $numprocs / $threads_per_task ))
2908	do
2909	echo $localhost_realname >> hostfile
2910	(( ii = ii + 1 ))
2911	done
2912	fi
2913	(( ii = $numprocs / $threads_per_task ))
2914	eval zeile=\"`head -n $ii hostfile`\"
2915	printf "\n *** running on: $zeile"
2916	export OMP_NUM_THREADS=$threads_per_task
2917	if [[ $threads_per_task != 1 ]]
2918	then
2919	printf "\n threads per task: $threads_per_task"
2920	fi
2921	printf "\n\n"
2922	if [[ $scirocco = true ]]
2923	then
2924	mpiexec -machinefile hostfile -n $ii a.out $ROPTS > aout_output 2>&1
2925	else
2926	mpirun -machinefile hostfile -np $ii a.out $ROPTS > aout_output 2>&1
2927	fi
2928	elif [[ $host = decalpha ]]
2929	then
2930	dmpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2931	elif [[ $host = lctit ]]
2932	then
2933	export runfile=runfile.$kennung
2934
2935	echo "cd $PWD" > $runfile
2936	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2937	echo "export cpurest=$cpurest" >> $runfile
2938	echo "export fname=$fname" >> $runfile
2939	echo "export localhost=$localhost" >> $runfile
2940	echo "export return_addres=$return_addres" >> $runfile
2941	echo "export return_username=$return_username" >> $runfile
2942	echo "export tasks_per_node=$tasks_per_node" >> $runfile
2943	echo "export write_binary=$write_binary" >> $runfile
2944	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
2945	echo "./a.out" >> $runfile
2946	chmod u+x $runfile
2947
2948	if [[ "$QUEUE" = interactive ]]
2949	then
2950	mpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2951	else
2952	n1ge -fore -mpi $numprocs -q $queue a.out $ROPTS > aout_output 2>&1
2953	fi
2954
2955	rm $runfile
2956	else
2957	mpprun -n $numprocs a.out $ROPTS > aout_output 2>&1
2958	fi
2959	[[ $? != 0 ]] && execution_error=true
2960
2961
2962	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
2963	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
2964	then
2965	apprentice
2966	fi
2967	else
2968	a.out $ROPTS > aout_output 2>&1
2969	fi
2970	fi
2971	if [[ $? != 0 \|\| $execution_error = true ]]
2972	then
2973
2974	# ABBRUCH BEI LAUFZEITFEHLER
2975	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2976	printf "\n +++ runtime error occured"
2977	locat=execution
2978	exit
2979	else
2980	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2981	printf "\n$striche\n *** execution finished \n"
2982	fi
2983
2984
2985
2986	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
2987	(( i = 0 ))
2988	while (( i < ioc ))
2989	do
2990	(( i = i + 1 ))
2991	if (( i == 1 ))
2992	then
2993	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
2994	fi
2995	printf "\n >>> ${out_command[$i]}"
2996	eval ${out_command[$i]}
2997	if (( i == ioc ))
2998	then
2999	printf "\n$striche\n"
3000	fi
3001	done
3002
3003
3004	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3005	if [[ $do_trace = true ]]
3006	then
3007	printf "\n\n"
3008	ls -al
3009	fi
3010
3011
3012
3013	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3014	(( i = 0 ))
3015	while (( i < iout ))
3016	do
3017	(( i = i + 1 ))
3018	if (( i == 1 ))
3019	then
3020	printf "\n\n *** saving OUTPUT-files:\n$striche"
3021	fi
3022
3023	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3024	files_for_pes=false; filetyp=file
3025	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3026	then
3027	files_for_pes=true; filetyp=directory
3028	actionout[$i]=""
3029	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3030	then
3031	actionout[$i]=""
3032	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3033	then
3034	files_for_pes=true; filetyp=directory
3035	actionout[$i]="ar"
3036	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3037	then
3038	actionout[$i]="ar"
3039	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3040	then
3041	files_for_pes=true; filetyp=directory
3042	actionout[$i]="fl"
3043	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3044	then
3045	actionout[$i]="fl"
3046	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3047	then
3048	files_for_pes=true; filetyp=directory
3049	actionout[$i]="tr"
3050	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3051	then
3052	actionout[$i]="tr"
3053	fi
3054
3055	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3056	then
3057	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3058	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3059	then
3060	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3061	else
3062
3063
3064	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3065	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3066	# REMOTE-RECHNUNGEN
3067	if [[ "${actionout[$i]}" = tr ]]
3068	then
3069	if [[ $localhost != $fromhost ]]
3070	then
3071	if [[ $files_for_pes = false ]]
3072	then
3073	cps=""
3074	cst=""
3075	else
3076	cps=-c
3077	cst="/"
3078	fi
3079	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3080	then
3081
3082	# TRANSFER IN EIGENSTAENDIGEM JOB
3083	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3084	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3085	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3086	if [[ $files_for_pes = false ]]
3087	then
3088	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3089	else
3090	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3091	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3092	fi
3093
3094	echo "set -x" > transfer_${localout[$i]}
3095	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3096	if [[ $filetransfer_protocol = ftp ]]
3097	then
3098	if [[ $files_for_pes = true ]]
3099	then
3100	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3101	fi
3102	printf "\n >>> OUTPUT: ${localout[$i]} by FTP in seperate job to"
3103	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3104	printf "\n or higher cycle\n"
3105	echo "ftpcopy -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3106	else
3107	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3108	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3109	printf "\n or higher cycle\n"
3110	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3111	fi
3112	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3113
3114	if [[ $localhost = nech ]]
3115	then
3116	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3117	else
3118	if [[ "$LOGNAME" = b323013 ]]
3119	then
3120	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3121	else
3122	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3123	fi
3124	fi
3125
3126	else
3127
3128	# TRANSFER INNERHALB DIESES JOBS
3129	transfer_failed=false
3130	if [[ $filetransfer_protocol = ftp ]]
3131	then
3132	if [[ $files_for_pes = true ]]
3133	then
3134	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3135	fi
3136	printf "\n >>> OUTPUT: ${localout[$i]} by FTP to"
3137	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3138	ftpcopy -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3139	[[ $? != 0 ]] && transfer_failed=true
3140	else
3141	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3142	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3143	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3144	[[ $? != 0 ]] && transfer_failed=true
3145	fi
3146
3147	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3148	# LOKALER MASCHINE ANLEGEN
3149	if [[ $transfer_failed = true ]]
3150	then
3151	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3152	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3153
3154	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3155	# ANLEGEN.
3156	eval local_catalog=${pathout[$i]}
3157	if [[ ! -d $local_catalog ]]
3158	then
3159	printf " *** local directory does not exist. Trying to create:\n"
3160	printf " $local_catalog \n"
3161	mkdir -p $local_catalog
3162	fi
3163	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3164	transfer_problems=true
3165	fi
3166	fi
3167	else
3168
3169	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3170	actionout[$i]=""
3171	fi
3172	fi
3173
3174
3175	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3176	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3177	# REMOTE-RECHNUNGEN
3178	if [[ "${actionout[$i]}" = tra ]]
3179	then
3180	if [[ $localhost != $fromhost ]]
3181	then
3182	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3183	then
3184
3185	# TRANSFER IN EIGENSTAENDIGEM JOB
3186	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3187	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3188	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3189	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3190
3191	echo "set -x" > transfer_${localout[$i]}
3192	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3193	if [[ $filetransfer_protocol = ftp ]]
3194	then
3195	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP in seperate job to"
3196	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3197	printf "\n or higher cycle\n"
3198	echo "ftpcopy -A -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3199	else
3200	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3201	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3202	printf "\n or higher cycle\n"
3203	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3204	fi
3205	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3206
3207	if [[ $localhost = nech ]]
3208	then
3209	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3210	else
3211	if [[ $LOGNAME = b323013 ]]
3212	then
3213	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3214	else
3215	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3216	fi
3217	fi
3218
3219	else
3220
3221	# TRANSFER INNERHALB DIESES JOBS
3222	transfer_failed=false
3223	if [[ $filetransfer_protocol = ftp ]]
3224	then
3225	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP to"
3226	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3227	ftpcopy -A -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3228	[[ $? != 0 ]] && transfer_failed=true
3229	else
3230	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3231	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3232	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3233	[[ $? != 0 ]] && transfer_failed=true
3234	fi
3235
3236	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3237	# LOKALER MASCHINE ANLEGEN
3238	if [[ $transfer_failed = true ]]
3239	then
3240	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3241	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3242
3243	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3244	# ANLEGEN
3245	eval local_catalog=${pathout[$i]}
3246	if [[ ! -d $local_catalog ]]
3247	then
3248	printf " *** local directory does not exist. Trying to create:\n"
3249	printf " $local_catalog \n"
3250	mkdir -p $local_catalog
3251	fi
3252
3253	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3254	transfer_problems=true
3255	fi
3256	fi
3257	else
3258
3259	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3260	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3261	actionout[$i]=a
3262	fi
3263	fi
3264
3265
3266	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3267	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3268	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3269	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3270	if [[ "${actionout[$i]}" = fl ]]
3271	then
3272	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3273	chmod g+rx $tmp_data_catalog
3274	if [[ $files_for_pes = false ]]
3275	then
3276	printf "\n >>> OUTPUT: ${localout[$i]} to"
3277	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3278	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3279	else
3280	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3281	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3282	mkdir $tmp_data_catalog/${frelout[$i]}
3283	ln -f ${localout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3284	fi
3285
3286
3287	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3288	if [[ $store_on_archive_system = true ]]
3289	then
3290
3291	if [[ $archive_system = asterix ]]
3292	then
3293	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3294	if [[ $files_for_pes = false ]]
3295	then
3296	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3297	else
3298	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3299	fi
3300	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3301	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3302	echo "then" >> archive_${frelout[$i]}
3303	echo " do_stageout=false" >> archive_${frelout[$i]}
3304	echo "else" >> archive_${frelout[$i]}
3305	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3306	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3307	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3308	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3309	if [[ $files_for_pes = false ]]
3310	then
3311	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3312	else
3313	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3314	fi
3315	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3316	echo "fi" >> archive_${frelout[$i]}
3317	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3318	elif [[ $archive_system = DMF ]]
3319	then
3320	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3321	if [[ $files_for_pes = false ]]
3322	then
3323	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3324	locat=DMF
3325	exit
3326	else
3327	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3328	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3329	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3330	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3331	fi
3332	elif [[ $archive_system = tivoli ]]
3333	then
3334	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3335	if [[ $files_for_pes = false ]]
3336	then
3337	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3338	echo "set -x" >> archive_${frelout[$i]}
3339	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3340	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3341	else
3342
3343	echo "set -x" >> archive_${frelout[$i]}
3344	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3345	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3346	cd $tmp_data_catalog
3347	all_files=`ls -1 ${frelout[$i]}/*`
3348	cd - > /dev/null
3349	(( inode = 0 ))
3350	(( tp1 = tasks_per_node + 1 ))
3351	while (( inode < nodes ))
3352	do
3353	# echo "*** all_files = \"$all_files\" "
3354	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3355	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3356	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3357	# echo "*** files = \"$files\" "
3358	# echo "*** all_files = \"$all_files\" "
3359	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3360	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3361	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3362	(( inode = inode + 1 ))
3363	done
3364	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3365	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3366	fi
3367	elif [[ $archive_system = ut ]]
3368	then
3369	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3370	if [[ $files_for_pes = false ]]
3371	then
3372	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3373	echo "set -x" >> archive_${frelout[$i]}
3374	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3375	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3376	else
3377
3378	echo "set -x" >> archive_${frelout[$i]}
3379	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3380	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3381	cd $tmp_data_catalog
3382	all_files=`ls -1 ${frelout[$i]}/*`
3383	cd - > /dev/null
3384	(( inode = 0 ))
3385	(( tp1 = tasks_per_node + 1 ))
3386	while (( inode < nodes ))
3387	do
3388	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3389	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3390	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3391	(( inode = inode + 1 ))
3392	done
3393	fi
3394	elif [[ $archive_system = none ]]
3395	then
3396	printf " +++ archiving on $localhost not available!\n"
3397	fi
3398
3399	if [[ $archive_system != none ]]
3400	then
3401	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3402	then
3403	subjob -d -v -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3404	elif [[ $localhost = nech ]]
3405	then
3406	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3407	fi
3408	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3409	fi
3410	else
3411	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3412	fi
3413
3414
3415	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3416	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3417	if [[ $files_for_pes = false ]]
3418	then
3419	cat /dev/null > ${pathout[$i]}
3420	else
3421	mkdir -p ${pathout[$i]}
3422	fi
3423
3424	fi
3425
3426
3427	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3428	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3429	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3430	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3431	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3432	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3433	if [[ "${actionout[$i]}" = ar ]]
3434	then
3435	if [[ $files_for_pes = false ]]
3436	then
3437	printf "\n >>> OUTPUT: ${localout[$i]} to"
3438	printf "\n ${pathout[$i]}"
3439	printf "\n File will be copied to archive-system ($archive_system) !\n"
3440	else
3441	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3442	printf "\n ${pathout[$i]}"
3443	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3444	fi
3445	mv ${localout[$i]} ${frelout[$i]}
3446
3447	file_saved=false
3448
3449	if [[ $archive_system = asterix ]]
3450	then
3451	do_stageout=true
3452	(( stageout_anz = 0 ))
3453	while [[ $do_stageout = true ]]
3454	do
3455	if [[ $files_for_pes = false ]]
3456	then
3457	stageout ${frelout[$i]} > STAGE_OUTPUT
3458	else
3459	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3460	fi
3461	cat STAGE_OUTPUT
3462	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3463	then
3464	file_saved=true
3465	do_stageout=false
3466	else
3467	if [[ $files_for_pes = false ]]
3468	then
3469	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3470	else
3471	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3472	fi
3473	(( stageout_anz = stageout_anz + 1 ))
3474	if (( stageout_anz == 10 ))
3475	then
3476	printf "\n +++ stoped after 10 unsuccessful tries!"
3477	archive_save=false
3478	do_stageout=false
3479	else
3480	printf "\n *** new try to store on archive after 15 min:"
3481	sleep 900
3482	fi
3483	fi
3484	done
3485	elif [[ $archive_system = DMF ]]
3486	then
3487	if [[ $files_for_pes = false ]]
3488	then
3489	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3490	locat=DMF
3491	exit
3492	else
3493	rm -rf $ARCHIVE/${frelout[$i]}
3494	cp -r ${frelout[$i]} $ARCHIVE
3495	fi
3496	file_saved=true
3497	elif [[ $archive_system = tivoli ]]
3498	then
3499	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3500	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3501	# GELEGT WERDEN
3502	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3503	chmod g+rx $tmp_data_catalog
3504	if [[ $files_for_pes = false ]]
3505	then
3506	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3507	else
3508	mkdir $tmp_data_catalog/${frelout[$i]}
3509	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3510	fi
3511
3512	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3513	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3514	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3515	if [[ $files_for_pes = false ]]
3516	then
3517	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3518	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3519	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3520	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3521	else
3522	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3523	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3524	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3525	fi
3526
3527	subjob -v -d -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3528	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3529	file_saved=true
3530
3531	elif [[ $archive_system = ut ]]
3532	then
3533	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3534	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3535	# GELEGT WERDEN
3536	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3537	chmod g+rx $tmp_data_catalog
3538	if [[ $files_for_pes = false ]]
3539	then
3540	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3541	else
3542	mkdir $tmp_data_catalog/${frelout[$i]}
3543	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3544	fi
3545
3546	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3547	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3548	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3549	if [[ $files_for_pes = false ]]
3550	then
3551	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3552	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3553	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3554	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3555	else
3556	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3557	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3558	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3559	fi
3560
3561	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3562	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3563	file_saved=true
3564
3565	else
3566	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3567	archive_save=false
3568	fi
3569	if [[ $file_saved = true ]]
3570	then
3571	if [[ $files_for_pes = false ]]
3572	then
3573	cat /dev/null > ${pathout[$i]}
3574	else
3575	mkdir -p ${pathout[$i]}
3576	fi
3577	fi
3578	fi
3579
3580	# APPEND AUF LOKALER MASCHINE
3581	if [[ "${actionout[$i]}" = "a" ]]
3582	then
3583	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3584	cat ${localout[$i]} >> ${pathout[$i]}
3585	fi
3586
3587	# KOPIEREN AUF LOKALER MASCHINE
3588	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3589	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3590	then
3591
3592	# KOPIEREN AUF EINPROZESSORMASCHINE
3593	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3594	then
3595	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3596	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3597	else
3598	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3599	cp ${localout[$i]} ${pathout[$i]}
3600	fi
3601
3602	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3603	then
3604
3605	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3606	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3607	# WIRD DANN KOPIERT
3608	# PER MOVE UMBENANNT WERDEN
3609	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3610	cp -r ${localout[$i]} ${pathout[$i]}
3611
3612	fi
3613	fi
3614	done
3615	if (( i != 0 ))
3616	then
3617	if [[ $transfer_problems = true ]]
3618	then
3619	printf "\n$striche\n *** OUTPUT-files saved"
3620	printf "\n +++ WARNING: some data transfers failed! \n"
3621	else
3622	printf "\n$striche\n *** all OUTPUT-files saved \n"
3623	fi
3624	fi
3625
3626
3627	# EVENTUELL FOLGEJOB STARTEN
3628	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3629	if [[ -f CONTINUE_RUN ]]
3630	then
3631
3632	if [[ $archive_save = true ]]
3633	then
3634
3635	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3636	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3637	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3638	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3639	# HANDEN
3640	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3641	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3642	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3643	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3644	then
3645	mc=`echo $mc \| sed 's/#/f/g'`
3646	fi
3647
3648
3649	# JOB STARTEN
3650	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3651	echo " $mc"
3652	printf "\n$striche\n"
3653	if [[ $localhost != $fromhost ]]
3654	then
3655
3656	if [[ $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3657	then
3658	echo "*** ssh will be used to initiate restart-runs!"
3659	echo " return_addres=\"$return_addres\" "
3660	echo " return_username=\"$return_username\" "
3661	if [[ $return_addres = 172.20.25.41 ]]
3662	then
3663	# WORKAROUND AUF SCIROCCO AM TIT
3664	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3665	else
3666	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3667	fi
3668	else
3669	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3670	locat=restart; exit
3671	fi
3672
3673	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3674	# DER AKTUELLE JOB ENDET
3675	sleep 30
3676
3677	else
3678
3679	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3680	# RUFEN WERDEN
3681	cd $LOCAL_PWD
3682	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3683	cd - > /dev/null
3684	fi
3685	printf "\n$striche\n *** restart-run initiated \n"
3686
3687
3688	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3689	# GEHOLT WORDEN SIND, LOESCHEN
3690	(( i = 0 ))
3691	while (( i < iin ))
3692	do
3693	(( i = i + 1 ))
3694	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3695	then
3696	rm -r $tmp_data_catalog/${frelin[$i]}
3697	fi
3698	done
3699
3700	else
3701
3702	printf "\n +++ no restart-run possible, since errors occured"
3703	printf "\n during the archive process"
3704	fi
3705
3706	fi
3707
3708
3709
3710	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3711	if [[ "$email_notification" != "" ]]
3712	then
3713
3714	if [[ $localhost != $fromhost ]]
3715	then
3716	if [[ -f CONTINUE_RUN ]]
3717	then
3718	echo "PALM restart run necessary" > email_text
3719	echo "description header of actual run:" >> email_text
3720	cat CONTINUE_RUN >> email_text
3721	echo "mrun-command to restart:" >> email_text
3722	echo "$mc" >> email_text
3723	else
3724	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3725	fi
3726	mail $email_notification < email_text
3727	printf "\n *** email notification sent to \"$email_notification\" "
3728	fi
3729	fi
3730
3731
3732
3733	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3734	cd $HOME
3735	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3736
3737	else
3738
3739
3740	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3741	# CHENDE AKTIONEN DURCHGEFUEHRT
3742
3743	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3744	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -f $filetransfer_protocol -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3745	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3746	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3747	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3748	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3749	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3750	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3751	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3752	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3753	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3754	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3755	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3756	if [[ $use_openmp = true ]]
3757	then
3758	mrun_com=${mrun_com}" -O"
3759	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3760	else
3761	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3762	fi
3763	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3764	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3765	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3766	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3767	[[ $node_usage != default ]] && mrun_com=${mrun_com}" -n $node_usage"
3768	if [[ $do_remote = true ]]
3769	then
3770	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3771	fi
3772
3773
3774	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3775	jobfile=jobfile.$RANDOM
3776
3777
3778	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3779	echo "mkdir $TEMPDIR" >> $jobfile
3780	echo "cd $TEMPDIR" >> $jobfile
3781
3782
3783	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3784	if [[ $do_trace = true ]]
3785	then
3786	echo "set -x" >> $jobfile
3787	else
3788	echo "set +vx" >> $jobfile
3789	fi
3790
3791
3792	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3793	# SOWIE GEGEBENENFALLS DES MAKEFILES
3794	if [[ $do_compile = true ]]
3795	then
3796
3797	source_catalog=SOURCES_FOR_RUN_$fname
3798
3799	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3800	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3801	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3802	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3803	echo "export SOURCES_COMPLETE=true" >> $jobfile
3804	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3805
3806	for filename in $source_list
3807	do
3808	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3809	echo "cat > $filename << \"%END%\"" >> $jobfile
3810	cat $source_catalog/$filename >> $jobfile
3811	echo " " >> $jobfile
3812	echo "%END%" >> $jobfile
3813	echo " " >> $jobfile
3814	done
3815
3816	if [[ "$use_makefile" = true ]]
3817	then
3818	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3819	echo "cat > Makefile << \"%END%\"" >> $jobfile
3820	cat $source_catalog/Makefile >> $jobfile
3821	echo " " >> $jobfile
3822	echo "%END%" >> $jobfile
3823	echo " " >> $jobfile
3824	fi
3825
3826	echo "cd - > /dev/null" >> $jobfile
3827
3828	fi
3829
3830
3831	# ABSPEICHERN DER KONFIGURATIONSDATEI
3832	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3833	echo "cat > $config_file << \"%END%\"" >> $jobfile
3834	cat $config_file >> $jobfile
3835	echo "%END%" >> $jobfile
3836	echo " " >> $jobfile
3837
3838
3839	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3840	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3841	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3842	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3843	echo "%END%" >> $jobfile
3844	if [[ $host = lctit ]]
3845	then
3846	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3847	echo "mv mrun_new $mrun_script_name" >> $jobfile
3848	fi
3849	echo "chmod u+x $mrun_script_name" >> $jobfile
3850	echo "execute_mrun=true" >> $jobfile
3851	echo " " >> $jobfile
3852
3853	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3854	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3855	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3856	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3857	if [[ $do_remote = true ]]
3858	then
3859	(( i = 0 ))
3860	while (( i < iin ))
3861	do
3862	(( i = i + 1 ))
3863	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3864	if [[ "${transin[$i]}" = job ]]
3865	then
3866	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3867	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3868	echo " " >> $jobfile
3869	echo "%END%" >> $jobfile
3870	else
3871	if [[ $filetransfer_protocol = ftp ]]
3872	then
3873	echo "ftpcopy -b -o -g -s $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3874	else
3875	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3876	fi
3877	fi
3878
3879	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3880	echo "if [[ \$? = 1 ]]" >> $jobfile
3881	echo "then" >> $jobfile
3882	echo " echo \" \" " >> $jobfile
3883	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3884	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3885	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3886	echo " execute_mrun=false" >> $jobfile
3887	echo "fi" >> $jobfile
3888	done
3889	fi
3890
3891	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3892	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
3893	echo "LOCAL_PWD=$working_directory" >> $jobfile
3894	echo "export LOCAL_PWD" >> $jobfile
3895
3896	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
3897	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
3898	echo "export LOCAL_MRUN_PATH" >> $jobfile
3899
3900	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
3901	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
3902	then
3903	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
3904	fi
3905
3906	# MRUN AUF ZIELRECHNER AUFRUFEN
3907	echo "set -x" >> $jobfile
3908	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
3909
3910	echo 'ls -al; echo `pwd`' >> $jobfile
3911	echo "cd \$HOME" >> $jobfile
3912	echo "rm -rf $TEMPDIR" >> $jobfile
3913
3914
3915
3916
3917	# JOB PER SUBJOB STARTEN
3918	if [[ $silent = false ]]
3919	then
3920	printf "\n "
3921	else
3922	printf "\n\n"
3923	fi
3924
3925	subjob $job_on_file -h $host -u $remote_username -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -f $filetransfer_protocol -v $jobfile
3926	rm -rf $jobfile
3927
3928
3929	fi # ENDE REMOTE-TEIL
3930
3931
3932
3933	# ENDE DER PROZEDUR

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