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source: palm/trunk/SCRIPTS/mrun @ 554

Last change on this file since 554 was 544, checked in by maronga, 14 years ago
adjustments for lcxt4
Property svn:keywords set to `Id Rev`
File size: 172.6 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 544 2010-08-17 10:44:58Z weinreis $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211
212
213
214	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
215
216	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
217	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
218	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
219
220	AddFilenames=""
221	additional_conditions=""
222	add_source_path=""
223	afname=""
224	archive_save=true
225	archive_system=none
226	compiler_name=""
227	cond1=""
228	cond2=""
229	config_file=.mrun.config
230	coupled_dist=""
231	coupled_mode="mpi1"
232	cpp_opts=""
233	cpp_options=""
234	cpumax=0
235	cpurest=0
236	delete_temporary_catalog=true
237	do_batch=false
238	do_compile=true
239	do_remote=false
240	do_stagein=true
241	do_stageout=true
242	do_trace=false
243	email_notification="none"
244	exclude=""
245	executable=""
246	execution_error=false
247	fimm=false
248	fname=test
249	fromhost=""
250	global_revision=""
251	group_number=none
252	host=""
253	host_file=""
254	hp=""
255	ignore_archive_error=false
256	input_list=""
257	interpreted_config_file=""
258	job_catalog="~/job_queue"
259	job_on_file=""
260	keep_data_from_previous_run=false
261	link_local_input=false
262	link_local_output=false
263	localhost_realname=$(hostname)
264	local_compile=false
265	local_dvrserver_running=.FALSE.
266	locat=normal
267	mainprog=""
268	makefile=""
269	mc=$0
270	while [[ $(echo $mc \| grep -c "/") != 0 ]]
271	do
272	mc=`echo $mc \| cut -f2- -d"/"`
273	done
274	module_calls=""
275	mrun_script_name=$mc
276	netcdf_inc=""
277	netcdf_lib=""
278	netcdf_support=false
279	node_usage=default
280	numprocs=""
281	numprocs_atmos=0
282	numprocs_ocean=0
283	OOPT=""
284	openmp=false
285	output_list=""
286	package_list=""
287	punkte="..........................................................."
288	queue=none
289	read_from_config=""
290	restart_run=false
291	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
292	if [[ $return_addres = 130.75.105.158 ]]
293	then
294	return_addres=172.20.25.41
295	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
296	fi
297	return_password=""
298	return_username=$LOGNAME
299	remotecall=false
300	remote_username=""
301	run_coupled_model=false
302	run_mode=""
303	scirocco=false
304	store_on_archive_system=false
305	striche=" ----------------------------------------------------------------------------"
306	silent=false
307	source_list=""
308	source_path=SOURCE
309	tasks_per_node=""
310	threads_per_task=1
311	tmpcreate=false
312	tmp_data_catalog=""
313	transfer_problems=false
314	usern=$LOGNAME
315	use_openmp=false
316	working_directory=`pwd`
317	TOPT=""
318	XOPT=""
319	zeit=$( date \| cut -c 12-19 )
320
321	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
322	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
323
324	typeset -R30 calltime
325	typeset -L20 spalte1
326	typeset -L40 spalte2
327	typeset -L60 spalte3
328	typeset -L35 string1=`date`
329	typeset -L12 string2=$usern
330	typeset -L12 string3=$localhost_realname
331	typeset -L12 string4
332	typeset -L12 string5
333	typeset -L30 version="MRUN 2.0 Rev$Rev: 544 $"
334
335
336
337	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
338	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
339
340	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
341	# EXPORTIERT WERDEN
342	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
343	export group_number input_list memory numprocs output_list queue run_mode
344
345
346
347	# FEHLERBEHANDLUNG
348	# BEI EXIT:
349	trap 'rm -rf $working_directory/tmp_mrun
350	if [[ $locat != localhost ]]
351	then
352	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
353	# then
354	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
355	#MRUN-calls on $localhost
356	#
357	#date and time user localhost remotehost termination mrun-command
358	#--------------------------------------------------------------------------------------------------------------------
359	#%STATEND%
360	# chmod 666 ${mrun_path}/statistik/mrun_statistik
361	# fi
362	#
363	# # EINTRAG IN DIE STATISTIK-DATEI
364	# string4=$host
365	# string5=$locat
366	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
367	# then
368	# if [[ $do_batch = true ]]
369	# then
370	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
371	# else
372	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
373	# fi
374	# fi
375	echo " " > /dev/null
376	fi
377
378	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
379	then
380
381	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
382	(( i = 0 ))
383	while (( i < iec ))
384	do
385	(( i = i + 1 ))
386	printf "\n *** Execution of ERROR-command:\n"
387	printf " >>> ${err_command[$i]}\n"
388	eval ${err_command[$i]}
389	done
390	if [[ -n $interpreted_config_file ]] then
391	rm -rf $interpreted_config_file
392	fi
393	if [[ -n .mrun_environment ]] then
394	rm -rf .mrun_environment
395	fi
396	if [[ $tmpcreate = true ]]
397	then
398	printf "\n *** Contents of \"$TEMPDIR\":\n"
399	ls -al; cd
400	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
401	fi
402	if [[ "$dvrserver_id" != "" ]]
403	then
404	echo "+++ killing dvrserver_id=$dvrserver_id"
405	kill $dvrserver_id
406	fi
407	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
408	then
409	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
410	fi
411	printf "\n\n+++ MRUN killed \n\n"
412	elif [[ $locat != control_c ]]
413	then
414	printf "\n\n --> all actions finished\n\n"
415	printf " Bye, bye $usern !!\n\n"
416	fi' exit
417
418
419	# BEI TERMINAL-BREAK:
420	trap 'rm -rf $working_directory/tmp_mrun
421	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
422	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
423	then
424	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
425	fi
426	if [[ "$dvrserver_id" != "" ]]
427	then
428	echo "+++ killing dvrserver_id=$dvrserver_id"
429	kill $dvrserver_id
430	fi
431	printf "\n+++ MRUN killed by \"^C\" \n\n"
432	locat=control_c
433	exit
434	' 2
435
436
437	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
438	# BEEN SET
439	if [[ "$PALM_BIN" = "" ]]
440	then
441	printf "\n +++ environment variable PALM_BIN has not been set"
442	printf "\n please set it to the directory where the PALM scripts are located"
443	locat=palm_bin; exit
444	fi
445	export PATH=$PALM_BIN:$PATH
446
447
448
449	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
450	# FUER FOLGEJOBS BENOETIGT WIRD
451	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
452	do
453	case $option in
454	(a) afname=$OPTARG;;
455	(A) store_on_archive_system=true; mc="$mc -A";;
456	(b) do_batch=true; mc="$mc -b";;
457	(B) delete_temporary_catalog=false; mc="$mc -B";;
458	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
459	(C) restart_run=true; mc="$mc -C";;
460	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
461	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
462	(F) job_on_file="-D"; mc="$mc -F";;
463	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
464	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
465	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
466	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
467	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
468	(I) ignore_archive_error=true; mc="$mc -I";;
469	(k) keep_data_from_previous_run=true; mc="$mc -k";;
470	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
471	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
472	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
473	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
474	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
475	(O) use_openmp=true; mc="$mc -O";;
476	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
477	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
478	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
479	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
480	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
481	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
482	(S) read_from_config=false; mc="$mc -S";;
483	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
484	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
485	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
486	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
487	(v) silent=true; mc="$mc -v";;
488	(x) do_trace=true;set -x; mc="$mc -x";;
489	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
490	(y) ocean_file_appendix=true; mc="$mc -y";;
491	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
492	(\?) printf "\n +++ unknown option $OPTARG \n"
493	printf "\n --> type \"$0 ?\" for available options \n"
494	locat=parameter;exit;;
495	esac
496	done
497
498
499	# EVTL. POSITIONSPARAMETER EINLESEN
500	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
501	shift OPTIND-1
502
503
504	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
505	if [[ "$1" = "?" ]]
506	then
507	(printf "\n *** mrun can be called as follows:\n"
508	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
509	printf "\n Description of available options:\n"
510	printf "\n Option Description Default-Value"
511	printf "\n -a base name of input files equiv. -d"
512	printf "\n -A archiving when using file-attribute fl"
513	printf "\n -b batch-job on local machine ---"
514	printf "\n -B do not delete temporary directory at end ---"
515	printf "\n -c configuration file .mrun.config"
516	printf "\n -d base name of files attached to program test"
517	printf "\n -D preprocessor(cpp)-directives \"\" "
518	printf "\n -F create remote job file only ---"
519	printf "\n -h execution host $localhost_realname"
520	printf "\n -i INPUT control list \"\" "
521	printf "\n -I archiving errors of previous batch-jobs"
522	printf "\n will be ignored"
523	printf "\n -k keep data from previous run"
524	printf "\n -K additional conditions for controling"
525	printf "\n usage of conditional code and"
526	printf "\n env-variables in configuration file \"\" "
527	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
528	printf "\n -M Makefile name Makefile"
529	printf "\n -n node usage (shared/not_shared) depending on -h"
530	printf "\n -o OUTPUT control list \"\" "
531	printf "\n -O use OpenMP ---"
532	printf "\n -p software package list \"\" "
533	printf "\n -q queue \"$queue\" "
534	printf "\n -r run control list (combines -i -o) \"\" "
535	printf "\n -s filenames of routines to be compiled \"\" "
536	printf "\n must end with .f, .f90, .F, or .c !"
537	printf "\n use \"..\" for more than one file and wildcards"
538	printf "\n -s TEST compiles all files with w-permit"
539	printf "\n -S config file interpreted by shellscript ---"
540	printf "\n -t allowed cpu-time in seconds (batch) 0"
541	printf "\n -T tasks per node depending on -h"
542	printf "\n -u username on remote machine \"\" "
543	printf "\n -v no prompt for confirmation ---"
544	printf "\n -x tracing of mrun for debug purposes ---"
545	printf "\n -X # of processors (on parallel machines) 1"
546	printf "\n -y add appendix \"_O\" to all local output"
547	printf "\n files (ocean precursor runs followed by"
548	printf "\n coupled atmosphere-ocean runs) ---"
549	printf "\n -Y run coupled model, \"#1 #2\" with"
550	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
551	printf "\n "
552	printf "\n Possible values of positional parameter <modus>:"
553	printf "\n \"?\" - this outline \n\n") \| more
554	exit
555	elif [[ "$1" != "" ]]
556	then
557	printf "\n +++ positional parameter $1 unknown \n"
558	locat=parameter; exit
559	fi
560
561
562
563	# KURZE STARTMELDUNG
564	printf "\n*** $version "
565	printf "\n will be executed. Please wait ..."
566
567
568
569	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
570	if [[ ! -f $config_file ]]
571	then
572	printf "\n\n +++ configuration file: "
573	printf "\n $config_file"
574	printf "\n does not exist"
575	locat=connect; exit
576	fi
577
578
579	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
580	line=""
581	grep "%host_identifier" $config_file > tmp_mrun
582	while read line
583	do
584	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
585	then
586	HOSTNAME=`echo $line \| cut -d" " -s -f2`
587	host_identifier=`echo $line \| cut -d" " -s -f3`
588	if [[ $localhost_realname = $HOSTNAME ]]
589	then
590	localhost=$host_identifier
591	break
592	fi
593	fi
594	done < tmp_mrun
595
596	if [[ "$localhost" = "" ]]
597	then
598	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
599	printf "\n for local host \"$localhost_realname\"."
600	printf "\n Please add line"
601	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
602	printf "\n to the configuration file."
603	locat=localhost; exit
604	fi
605
606
607	# HOSTSPEZIFISCHE VARIABLEN SETZEN
608	case $localhost_realname in
609	(r1\|r2\|h01\|b01) archive_system=tivoli;;
610	(cs*) archive_system=ut;;
611	(fimm.bccs.uib.no) fimm=true;;
612	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
613	(scirocco) scirocco=true;;
614	esac
615
616
617
618	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
619	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
620	[[ "$afname" = "" ]] && afname=$fname
621
622
623	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
624	if [[ "$run_mode" != "" ]]
625	then
626	input_list="$input_list $run_mode"
627	output_list="$output_list $run_mode"
628	fi
629
630
631	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
632	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
633	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
634	# STARTET)
635	if [[ "$fromhost" = "" ]]
636	then
637	fromhost=$localhost
638	fi
639
640
641	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
642	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
643	then
644	source_list=TEST
645	local_compile=true
646	host=$localhost
647	fi
648
649
650	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
651	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
652	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
653	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
654	if [[ -n $host && "$host" != $localhost ]]
655	then
656	do_batch=true
657	do_remote=true
658	case $host in
659	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
660	(*) printf "\n"
661	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
662	printf "\n is not available"
663	locat=nqs; (( iec = 0 )); exit;;
664	esac
665	else
666	host=$localhost
667	fi
668
669
670	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
671	if [[ -n $additional_conditions ]]
672	then
673	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
674	cond1=`echo $additional_conditions \| cut -d" " -f1`
675	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
676	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
677	if [[ -n $dummy ]]
678	then
679	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
680	locat=options; exit
681	fi
682	block=_$cond1
683	[[ -n $cond2 ]] && block=${block}_$cond2
684	fi
685
686
687	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
688	if [[ $run_coupled_model = true ]]
689	then
690
691	if [[ -n $coupled_dist ]]
692	then
693
694	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
695	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
696
697	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
698	then
699
700	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
701	printf "\n PEs (total) : $numprocs"
702	printf "\n PEs (atmosphere): $numprocs_atmos"
703	printf "\n PEs (ocean) : $numprocs_ocean"
704	locat=coupling; exit
705
706	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
707	# THIS SHOULD BE REMOVED IN FUTURE
708	elif (( $numprocs_ocean != $numprocs_atmos ))
709	then
710
711	printf "\n +++ currently only 1:1 topologies are supported"
712	printf "\n PEs (total) : $numprocs"
713	printf "\n PEs (atmosphere): $numprocs_atmos"
714	printf "\n PEs (ocean) : $numprocs_ocean"
715	(( numprocs_atmos = $numprocs / 2 ))
716	(( numprocs_ocean = $numprocs / 2 ))
717	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
718
719	fi
720
721	else
722
723	(( numprocs_ocean = $numprocs / 2 ))
724	(( numprocs_atmos = $numprocs / 2 ))
725
726	fi
727	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
728
729	# GET coupled_mode FROM THE CONFIG FILE
730	line=""
731	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
732	while read line
733	do
734	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
735	then
736	coupled_mode="mpi2"
737	fi
738	done < tmp_mrun
739
740	fi
741
742
743	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
744	# ARCHIVIERUNG FEHLGESCHLAGEN IST
745	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
746	then
747	if [[ $ignore_archive_error = false ]]
748	then
749	printf "\n +++ data archiving of previous run failed"
750	printf "\n see directory \~/job_queue on remote machine"
751	locat=archive; exit
752	else
753	printf "\n +++ warning: data archiving in a previous run failed"
754	printf "\n MRUN continues, trying to get backup copy"
755	fi
756	fi
757
758
759
760	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
761	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
762	if [[ "$read_from_config" = false ]]
763	then
764
765	[[ $silent = false ]] && printf "\n Reading the configuration file... "
766	while read zeile
767	do
768	[[ $silent = false ]] && printf "."
769
770
771	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
772	# ERSETZEN
773	eval zeile=\"$zeile\"
774
775
776	# INTERPRETATION DER ZEILE
777	if [[ "$(echo $zeile)" = "" ]]
778	then
779	# LEERZEILE, KEINE AKTION
780	continue
781
782	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
783	then
784
785	# ZEILE IST KOMMENTARZEILE
786	true
787
788	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
789	then
790
791	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
792	zeile=$(echo $zeile \| cut -c2-)
793	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
794	var=`echo $zeile \| cut -d" " -f1`
795	value=`echo $zeile \| cut -d" " -s -f2`
796	for_host=`echo $zeile \| cut -d" " -s -f3`
797	for_cond1=`echo $zeile \| cut -d" " -s -f4`
798	for_cond2=`echo $zeile \| cut -d" " -s -f5`
799
800	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
801	then
802
803	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
804	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
805	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
806
807
808	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
809	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
810	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
811	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
812	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
813	# KONFIGURATIONSDATEI
814	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
815	then
816	eval $var=\$value
817
818	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
819	if [[ $do_trace = true ]]
820	then
821	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
822	fi
823	fi
824
825	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
826	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
827	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
828	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
829	if [[ $var = host ]]
830	then
831	if [[ -n $host && "$host" != $localhost ]]
832	then
833	do_batch=true
834	do_remote=true
835	case $host in
836	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
837	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
838	printf "\n is not available"
839	locat=nqs; exit;;
840	esac
841	else
842	host=$localhost
843	fi
844	fi
845
846	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
847	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
848	# DEN PROGRAMMEN BENOETIGT WERDEN
849	export $var
850	fi
851
852
853
854
855	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
856	then
857
858	# ZEILE DEFINIERT ERROR-KOMMANDO
859	(( iec = iec + 1 ))
860	zeile=$(echo $zeile \| cut -c4-)
861	err_command[$iec]="$zeile"
862
863	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
864	then
865
866	# ZEILE DEFINIERT INPUT-KOMMANDO
867	(( iic = iic + 1 ))
868	zeile=$(echo $zeile \| cut -c4-)
869	in_command[$iic]="$zeile"
870
871	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
872	then
873
874	# ZEILE DEFINIERT OUTPUT-KOMMANDO
875	(( ioc = ioc + 1 ))
876	zeile=$(echo $zeile \| cut -c4-)
877	out_command[$ioc]="$zeile"
878
879	else
880
881	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
882	# s2a: in/out - Feld
883	# s2b: loc - Feld (optional)
884	# s2c: tr/ar - Feld (optional)
885	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
886	s1=`echo $zeile \| cut -d" " -f1`
887	s2=`echo $zeile \| cut -d" " -s -f2`
888	s2a=$(echo $s2 \| cut -d":" -f1)
889	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
890	then
891	s2b=""
892	s2c=""
893	else
894	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
895	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
896	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
897	fi
898	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
899	s3=`echo $zeile \| cut -d" " -f3`
900	s4=`echo $zeile \| cut -d" " -s -f4`
901	s5=`echo $zeile \| cut -d" " -s -f5`
902	s6=`echo $zeile \| cut -d" " -s -f6`
903
904
905	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
906	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
907	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
908	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
909	# HANDEN SEIN MUSS (D.H. s2b = loc)
910	IFSALT="$IFS"; IFS="$IFS:"
911	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
912	then
913	found=false
914	for actual in $input_list
915	do
916	for formal in $s3
917	do
918	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
919	done
920	done
921	if [[ $found = true ]]
922	then
923	(( iin = iin + 1 ))
924	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
925	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
926	extin[$iin]=$s6
927	fi
928	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
929	then
930	found=false
931	for actual in $output_list
932	do
933	for formal in $s3
934	do
935	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
936	done
937	done
938	if [[ $found = true ]]
939	then
940	(( iout = iout + 1 ))
941	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
942	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
943	fi
944	elif [[ "$s2a" != in && "$s2a" != out ]]
945	then
946	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
947	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
948	locat=connect; exit
949	fi
950	IFS="$IFSALT"
951	fi
952	done < $config_file
953
954	else
955
956
957	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
958	[[ $silent = false ]] && printf "..."
959	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
960	export interpreted_config_file=.icf.$RANDOM
961
962
963
964	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
965	# VERFUEGUNG STELLEN
966	cat > .mrun_environment << %%END%%
967	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
968	config_file = '$config_file', do_remote = '$do_remote',
969	do_trace = '$do_trace', host = '$host',
970	input_list = '$input_list', icf = '$interpreted_config_file',
971	localhost = '$localhost', output_list = '$output_list' /
972
973	%%END%%
974
975	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
976	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
977	mrun_memory=$memory
978	mrun_group_number=$group_number
979	mrun_cpumax=$cpumax
980	mrun_numprocs=$numprocs
981
982	if [[ $localhost_realname = "sx-fep" ]]
983	then
984	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
985	else
986
987	if [[ "$host" != $localhost ]]
988	then
989
990	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
991	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
992	if [[ $? != 0 ]]
993	then
994	printf "\n\n +++ no interpret_config found"
995	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
996	locat=interpret_config; exit
997	fi
998	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
999	$interpret_config_executable
1000
1001	else
1002
1003	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1004	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1005	then
1006	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1007	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1008	locat=interpret_config; exit
1009	else
1010	interpret_config${block}.x
1011	fi
1012
1013	fi
1014	fi
1015	rm .mrun_environment
1016
1017
1018	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1019	chmod u+x $interpreted_config_file
1020	export PATH=$PATH:.
1021	. $interpreted_config_file
1022	rm $interpreted_config_file
1023
1024
1025	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1026	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1027	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1028	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1029	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1030
1031	fi
1032
1033
1034	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1035	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1036	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1037	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1038	if [[ "$SOURCES_COMPLETE" = "" ]]
1039	then
1040
1041	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1042	# VEREINBART WURDE
1043	source_path=""
1044	line=""
1045	grep "%source_path" $config_file > tmp_mrun
1046	while read line
1047	do
1048	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1049	then
1050	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1051	then
1052	global_source_path=`echo $line \| cut -d" " -f2`
1053	fi
1054	fi
1055	done < tmp_mrun
1056
1057	line=""
1058	found=false
1059	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1060	while read line
1061	do
1062	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1063	then
1064	if [[ $found = true ]]
1065	then
1066	printf "\n\n +++ more than one source path found in configuration file"
1067	printf "\n for local host \"$localhost\" "
1068	locat=source_path; exit
1069	fi
1070	source_path=`echo $line \| cut -d" " -f2`
1071	found=true
1072	fi
1073	done < tmp_mrun
1074	rm tmp_mrun
1075
1076	if [[ "$source_path" = "" ]]
1077	then
1078	if [[ "$global_source_path" != "" ]]
1079	then
1080	source_path=$global_source_path
1081	else
1082	printf "\n\n +++ no source path found in configuration file"
1083	printf "\n for local host \"$localhost\" "
1084	locat=source_path; exit
1085	fi
1086	fi
1087	eval source_path=$source_path
1088
1089	if [[ ! -d $source_path ]]
1090	then
1091	printf "\n\n +++ source path \"$source_path\" on local host"
1092	printf "\n \"$localhost\" does not exist"
1093	locat=source_path; exit
1094	fi
1095
1096	fi
1097
1098
1099	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1100	# DURCH OPTION -G MITGETEILT)
1101	if [[ "$global_revision" = "" ]]
1102	then
1103	global_revision=`svnversion $source_path 2>/dev/null`
1104	global_revision="Rev: $global_revision"
1105	fi
1106
1107
1108	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1109	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1110	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1111	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1112	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1113	if [[ -n $host && "$host" != $localhost ]]
1114	then
1115	do_batch=true
1116	do_remote=true
1117	case $host in
1118	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1119	(*) printf "\n"
1120	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1121	printf "\n is not available"
1122	locat=nqs; (( iec = 0 )); exit;;
1123	esac
1124	else
1125	host=$localhost
1126	fi
1127
1128
1129	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1130	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1131	then
1132
1133	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1134	if [[ ! -n $numprocs ]]
1135	then
1136	printf "\n"
1137	printf "\n +++ option \"-K parallel\" requires additional specification"
1138	printf "\n of the number of processors to be used by"
1139	printf "\n mrun-option \"-X\" or by environment-variable"
1140	printf "\n \"numprocs\" in the configuration file"
1141	locat=numprocs; (( iec = 0 )); exit
1142	fi
1143
1144	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1145	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1146	# GESAMTPROZESSORANZAHL IST
1147	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1148	then
1149	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1150	(( ival = $tasks_per_node ))
1151	(( pes = numprocs ))
1152	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1153	# then
1154	# (( pes = pes - 1 ))
1155	# fi
1156	(( ii = pes / ival ))
1157	if (( pes - ii * ival > 0 ))
1158	then
1159	printf "\n"
1160	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1161	printf "\n divisor of the total number of processors (option \"-X\")"
1162	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1163	locat=tasks_per_node; (( iec = 0 )); exit
1164	fi
1165	fi
1166
1167	# IBMY HAT NUR EINEN KNOTEN
1168	if [[ $host = ibmy ]]
1169	then
1170	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1171	then
1172	printf "\n"
1173	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1174	printf "\n total number of processors (option \"-X\")"
1175	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1176	locat=tasks_per_node; (( iec = 0 )); exit
1177	fi
1178	fi
1179
1180	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1181	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1182	if [[ $use_openmp = true ]]
1183	then
1184	threads_per_task=$tasks_per_node
1185	tasks_per_node=1
1186	fi
1187
1188	# SETTINGS FOR SUBJOB-COMMAND
1189	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1190	then
1191	(( tp1 = tasks_per_node * threads_per_task ))
1192	TOPT="-T $tp1"
1193	else
1194	TOPT="-T $tasks_per_node"
1195	fi
1196	OOPT="-O $threads_per_task"
1197
1198	# GESAMTZAHL DER KNOTEN BESTIMMEN
1199	if [[ "$tasks_per_node" != "" ]]
1200	then
1201	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1202	fi
1203
1204	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1205	# SETZEN
1206	if [[ $node_usage = default ]]
1207	then
1208	if [[ $host = ibms ]]
1209	then
1210	node_usage=shared
1211	elif [[ $host = lctit ]]
1212	then
1213	node_usage=RAM64GB
1214	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1215	then
1216	node_usage=singlejob
1217	else
1218	node_usage=not_shared
1219	fi
1220	fi
1221
1222	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1223	then
1224	printf "\n"
1225	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1226	printf "\n \"shared\" or \"not_shared\""
1227	locat=tasks_per_node; (( iec = 0 )); exit
1228	fi
1229
1230	fi
1231
1232	# PRUEFEN, OB HOSTFILE EXISTIERT
1233	if [[ -n $hostfile ]]
1234	then
1235	if [[ ! -f $hostfile ]]
1236	then
1237	printf "\n"
1238	printf "\n +++ hostfile \"$hostfile\" does not exist"
1239	locat=hostfile; exit
1240	fi
1241	fi
1242
1243	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1244	if [[ $host = ibmy && $do_remote = false ]]
1245	then
1246	if [[ ! -f $HOME/.rhosts ]]
1247	then
1248	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1249	printf "\n\n *** file:"
1250	printf "\n $HOME/.rhosts"
1251	printf "\n was created\n"
1252	fi
1253	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1254	then
1255	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1256	printf "\n\n *** file:"
1257	printf "\n $HOME/.rhosts"
1258	printf "\n was extended by the name of the current host\n"
1259	fi
1260	fi
1261
1262
1263
1264	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1265	if [[ $queue = none ]]
1266	then
1267	case $host in
1268	(ibmb) if [[ $node_usage = shared ]]
1269	then
1270	queue=cshare
1271	else
1272	queue=csolo
1273	fi;;
1274	(ibmh) queue=no_class;;
1275	(ibmy) queue=parallel;;
1276	(lckyoto) queue=ph;;
1277	(lcsgib) queue=bigq;;
1278	(lcsgih) queue=bigq;;
1279	(lctit) queue=RAM64GB;;
1280	(nech) queue=none;;
1281	(necriam) queue=SP;;
1282	(unics) queue=unics;;
1283	esac
1284	fi
1285
1286
1287	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1288	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1289	# ERMITTELN
1290	(( i = 0 ))
1291	while (( i < iin ))
1292	do
1293	(( i = i + 1 ))
1294	(( maxcycle = 0 ))
1295
1296	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1297	if [[ "${actionin[$i]}" = di ]]
1298	then
1299	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1300	# REM-MASCHINE AUSWERTEN
1301	eval filename=${pathin[$i]}/${endin[$i]}
1302	else
1303	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1304	# REM-MASCHINE AUSWERTEN
1305	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1306	fi
1307
1308	# PRUEFEN AUF VORHANDENSEIN
1309	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1310	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1311	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1312	then
1313	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1314	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1315	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1316	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1317	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1318	if [[ "${transin[$i]}" != "locopt" ]]
1319	then
1320	printf "\n\n +++ INPUT-file: "
1321	if [[ "${extin[$i]}" = "" ]]
1322	then
1323	printf "\n $filename"
1324	else
1325	printf "\n $filename.${extin[$i]}"
1326	fi
1327	printf "\n does not exist\n"
1328	locat=input; exit
1329	else
1330	transin[$i]="unavailable"
1331	fi
1332	else
1333
1334	# ZYKLUSNUMMER FESTSTELLEN
1335	ls -1 -d $filename > filelist 2>/dev/null
1336	ls -1 -d $filename.* >> filelist 2>/dev/null
1337	while read zeile
1338	do
1339	cycle=$(print $zeile \| cut -f2 -d".")
1340	if [[ "$cycle" = "$zeile" ]]
1341	then
1342	(( icycle = 0 ))
1343	elif [[ "$cycle" = "${extin[$i]}" ]]
1344	then
1345	(( icycle = 0 ))
1346	else
1347	(( icycle = $cycle ))
1348	fi
1349	if (( icycle > maxcycle ))
1350	then
1351	(( maxcycle = icycle ))
1352	file_to_be_used=$zeile
1353	fi
1354	done <filelist
1355	rm filelist
1356
1357	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1358	if (( maxcycle > 0 ))
1359	then
1360	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1361	then
1362	filename=${filename}.$maxcycle.${extin[$i]}
1363	else
1364	filename=${filename}.$maxcycle
1365	fi
1366	else
1367	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1368	then
1369	filename=${filename}.${extin[$i]}
1370	fi
1371	fi
1372
1373	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1374	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1375	absnamein[$i]=$filename
1376	if (( maxcycle > 0 ))
1377	then
1378	if [[ "${actionin[$i]}" = di ]]
1379	then
1380	frelin[$i]=${endin[$i]}.$maxcycle
1381	else
1382	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1383	fi
1384	else
1385	if [[ "${actionin[$i]}" = di ]]
1386	then
1387	frelin[$i]=${endin[$i]}
1388	else
1389	frelin[$i]=${afname}${endin[$i]}
1390	fi
1391	fi
1392
1393	fi
1394	done
1395
1396
1397	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1398	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1399	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1400	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1401	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1402	(( i = 0 ))
1403	while (( i < iout ))
1404	do
1405	(( i = i + 1 ))
1406	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1407	then
1408	if [[ "${actionout[$i]}" = tr ]]
1409	then
1410	actionout[$i]=""
1411	elif [[ "${actionout[$i]}" = trpe ]]
1412	then
1413	actionout[$i]=pe
1414	elif [[ "${actionout[$i]}" = tra ]]
1415	then
1416	actionout[$i]=a
1417	fi
1418	(( maxcycle = 0 ))
1419	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1420	eval catalogname=${pathout[$i]}
1421	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1422	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1423	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1424	then
1425
1426	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1427	if cat /dev/null > $filename
1428	then
1429	rm $filename
1430	else
1431
1432	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1433	if [[ ! -d $catalogname ]]
1434	then
1435	if mkdir -p $catalogname
1436	then
1437	printf "\n\n *** directory:"
1438	printf "\n $catalogname"
1439	printf "\n was created\n"
1440	else
1441	printf "\n\n +++ OUTPUT-file:"
1442	printf "\n $filename"
1443	printf "\n cannot be created, because directory does not exist"
1444	printf "\n and cannot be created either"
1445	printf "\n"
1446	locat=output ; exit
1447	fi 2>/dev/null
1448	else
1449	printf "\n\n +++ OUTPUT-file:"
1450	printf "\n $filename"
1451	printf "\n cannot be created, although directory exists"
1452	printf "\n"
1453	locat=output ; exit
1454	fi
1455	fi 2>/dev/null
1456	else
1457
1458	# ZYKLUSNUMMER FESTSTELLEN
1459	ls -1 -d $filename > filelist 2>/dev/null
1460	ls -1 -d $filename.* >> filelist 2>/dev/null
1461	while read zeile
1462	do
1463	cycle=$(print $zeile \| cut -f2 -d".")
1464	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1465	then
1466	(( icycle = 1 ))
1467	else
1468	(( icycle = $cycle + 1 ))
1469	fi
1470	if (( icycle > maxcycle ))
1471	then
1472	(( maxcycle = icycle ))
1473	fi
1474	done <filelist
1475	rm filelist
1476	fi
1477
1478	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1479	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1480	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1481	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1482	if [[ "${actionout[$i]}" != a ]]
1483	then
1484	if (( maxcycle > 0 ))
1485	then
1486	filename=${filename}.$maxcycle
1487	if cat /dev/null > $filename
1488	then
1489	rm $filename
1490	else
1491	printf "\n +++ OUTPUT-file:"
1492	printf "\n $filename"
1493	printf "\n cannot be created"
1494	locat=output ; exit
1495	fi
1496	fi
1497	else
1498	(( maxcycle = maxcycle - 1 ))
1499	if (( maxcycle > 0 ))
1500	then
1501	filename=${filename}.$maxcycle
1502	fi
1503	fi
1504
1505	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1506	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1507	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1508	pathout[$i]=$filename
1509	if (( maxcycle > 0 ))
1510	then
1511	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1512	else
1513	frelout[$i]=${fname}${endout[$i]}
1514	fi
1515
1516	fi
1517	done
1518
1519
1520	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1521	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1522	then
1523	if [[ "$dvr_inc" = "" ]]
1524	then
1525	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1526	printf "\n This is required for the dvrp_graphics package.\n"
1527	locat=dvr; exit
1528	fi
1529	if [[ "$dvr_lib" = "" ]]
1530	then
1531	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1532	printf "\n This is required for the dvrp_graphics package.\n"
1533	locat=dvr; exit
1534	fi
1535	fi
1536
1537
1538	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1539	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1540	# UEBERSETZT ZU WERDEN)
1541	if [[ "$mainprog" = "" && "$executable" = "" ]]
1542	then
1543	printf "\n +++ neither main program nor executable defined"
1544	locat=source; exit
1545	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1546	then
1547	printf "\n +++ main program as well as executable defined"
1548	locat=source; exit
1549	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1550	then
1551	do_compile=false
1552	fi
1553
1554
1555	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1556	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1557	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1558	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1559	then
1560	rm -rf SOURCES_FOR_RUN_$fname
1561	mkdir SOURCES_FOR_RUN_$fname
1562	fi
1563
1564
1565	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1566	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1567	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1568	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1569	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1570	then
1571
1572	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1573	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1574
1575
1576	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1577	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1578	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1579	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1580	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1581	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1582	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1583	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1584	# GESAMMELT
1585	if [[ "$source_list" = WRITE_PERMIT ]]
1586	then
1587
1588	source_list=""
1589	cd $source_path
1590
1591
1592	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1593	Names=$(ls -1 *.f90 2>&1)
1594	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1595	Names=$(ls -1 *.F90 2>&1)
1596	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1597	Names=$(ls -1 *.F 2>&1)
1598	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1599	Names=$(ls -1 *.f 2>&1)
1600	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1601	Names=$(ls -1 *.c 2>&1)
1602	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1603
1604
1605	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1606	for dateiname in $Filenames
1607	do
1608	if [[ -w $dateiname ]]
1609	then
1610	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1611	then
1612	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1613	source_list=$source_list"$dateiname "
1614	fi
1615	fi
1616	done
1617
1618	cd - > /dev/null
1619
1620
1621	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1622	then
1623
1624	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1625	source_list=""
1626	cd $source_path
1627
1628
1629	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1630	if [[ ! -d .svn ]]
1631	then
1632	printf "\n\n +++ source directory"
1633	printf "\n \"$source_path\" "
1634	printf "\n is not under control of \"subversion\"."
1635	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1636	fi
1637
1638
1639	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1640	Filenames=""
1641	svn status > tmp_mrun
1642	while read line
1643	do
1644	firstc=`echo $line \| cut -c1`
1645	if [[ $firstc = M \|\| $firstc = "?" ]]
1646	then
1647	Name=`echo "$line" \| cut -c8-`
1648	extension=`echo $Name \| cut -d. -f2`
1649	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1650	then
1651	Filenames="$Filenames "$Name
1652	fi
1653	fi
1654	done < tmp_mrun
1655
1656
1657	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1658	for dateiname in $Filenames
1659	do
1660	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1661	source_list=$source_list"$dateiname "
1662	done
1663
1664	cd - > /dev/null
1665
1666
1667	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1668	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1669	# VORHANDEN
1670	elif [[ "$source_list" != "" && $restart_run != true ]]
1671	then
1672
1673	cd $source_path
1674
1675	for filename in $source_list
1676	do
1677
1678	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1679	if [[ $(print $filename \| grep -c "/") != 0 ]]
1680	then
1681	printf "\n +++ source code file: $filename"
1682	printf "\n must not contain (\"/\") "
1683	locat=source; exit
1684	fi
1685
1686	if [[ ! -f $filename ]]
1687	then
1688	printf "\n +++ source code file: $filename"
1689	printf "\n does not exist"
1690	locat=source; exit
1691	else
1692	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1693	fi
1694
1695	done
1696
1697	cd - > /dev/null
1698
1699	fi
1700
1701
1702	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1703	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1704	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1705	if [[ $restart_run != true ]]
1706	then
1707
1708	if [[ ! -f "$source_path/$mainprog" ]]
1709	then
1710	printf "\n\n +++ main program: $mainprog"
1711	printf "\n does not exist in source directory"
1712	printf "\n \"$source_path\"\n"
1713	locat=source; exit
1714	else
1715	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1716	then
1717	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1718	source_list=${mainprog}" $source_list"
1719	fi
1720	fi
1721	fi
1722
1723
1724	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1725	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1726	if [[ "$restart_run" != true ]]
1727	then
1728	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1729	if [[ ! -f $makefile ]]
1730	then
1731	printf "\n +++ file \"$makefile\" does not exist"
1732	locat=make; exit
1733	else
1734	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1735	fi
1736	fi
1737
1738
1739	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1740	if [[ $restart_run != true && "$add_source_path" != "" ]]
1741	then
1742
1743	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1744	if [[ ! -d $add_source_path ]]
1745	then
1746	printf "\n\n +++ WARNING: additional source code directory"
1747	printf "\n \"$add_source_path\" "
1748	printf "\n does not exist or is not a directory."
1749	printf "\n No source code will be used from this directory!\n"
1750	add_source_path=""
1751	sleep 3
1752	else
1753
1754	cd $add_source_path
1755	found=false
1756
1757	Names=$(ls -1 *.f90 2>&1)
1758	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1759	Names=$(ls -1 *.F90 2>&1)
1760	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1761	Names=$(ls -1 *.F 2>&1)
1762	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1763	Names=$(ls -1 *.f 2>&1)
1764	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1765	Names=$(ls -1 *.c 2>&1)
1766	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1767
1768	cd - > /dev/null
1769	cd SOURCES_FOR_RUN_$fname
1770
1771	# COPY MAKEFILE IF EXISTING
1772	if [[ -f $add_source_path/Makefile ]]
1773	then
1774	printf "\n\n *** user Makefile from directory"
1775	printf "\n \"$add_source_path\" is used \n"
1776	sleep 1
1777	cp $add_source_path/Makefile .
1778	fi
1779
1780	for dateiname in $AddFilenames
1781	do
1782	if [[ -f $dateiname ]]
1783	then
1784	printf "\n +++ source code file \"$dateiname\" found in additional"
1785	printf "\n source code directory \"$add_source_path\" "
1786	printf "\n but was also given with option \"-s\" which means that it should be taken"
1787	printf "\n from directory \"$source_path\"."
1788	locat=source; exit
1789	fi
1790
1791	cp $add_source_path/$dateiname .
1792	source_list="$source_list $dateiname"
1793
1794	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1795	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1796	then
1797	printf "\n\n +++ user file \"$dateiname\" "
1798	printf "\n is not listed in Makefile \n"
1799	locat=source; exit
1800	else
1801
1802	# Default User-Interface von der Liste entfernen, falls Datei
1803	# ein User-Interface enthaelt
1804	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1805	# then
1806	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1807	# then
1808	# rm -rf user_interface.f90
1809	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1810	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1811	# printf "\n since a user-interface is found in file"
1812	# printf "\n \"$add_source_path/$dateiname\" \n"
1813	# sleep 3
1814	# else
1815	if [[ $found = false ]]
1816	then
1817	found=true
1818	printf "\n\n *** following user file(s) added to the"
1819	printf " files to be translated:\n "
1820	fi
1821	printf "$dateiname "
1822	sleep 0.5
1823	fi
1824	done
1825	[[ $found = true ]] && printf "\n"
1826	cd - > /dev/null
1827	fi
1828	fi
1829
1830
1831	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1832	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1833	if [[ $restart_run != true && -n $package_list ]]
1834	then
1835
1836	cd $source_path
1837
1838	for package in $package_list
1839	do
1840
1841	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1842
1843	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1844	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1845	# LIEFERT
1846	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1847
1848
1849	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1850	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1851	for source_list_name in $package_source_list
1852	do
1853	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1854	then
1855
1856	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1857	ending=`echo $source_list_name \| cut -f2 -d.`
1858	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1859	then
1860	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1861	source_list="$source_list $source_list_name"
1862	fi
1863	fi
1864	done
1865	done
1866
1867	cd - > /dev/null
1868	fi
1869
1870
1871	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1872	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1873	# if [[ "$restart_run" != true ]]
1874	# then
1875	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1876	# if [[ ! -f $makefile ]]
1877	# then
1878	# printf "\n +++ file \"$makefile\" does not exist"
1879	# locat=make; exit
1880	# else
1881	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1882	# fi
1883	# fi
1884
1885	fi # do_compile=true
1886
1887
1888	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1889	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1890	if [[ $do_compile = true ]]
1891	then
1892
1893	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1894	# ZUSAMMENSETZEN
1895	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1896	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1897	then
1898	cpp_options="${cpp_options},-D__ibm=__ibm"
1899	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1900	then
1901	cpp_options="$cpp_options -D__nec"
1902	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1903	then
1904	cpp_options="$cpp_options -D__lc"
1905	else
1906	cpp_options="$cpp_options -D__$localhost"
1907	fi
1908
1909	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1910	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1911	then
1912	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1913	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1914	else
1915	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1916	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1917	fi
1918
1919	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1920	if [[ -n $package_list ]]
1921	then
1922	for package in $package_list
1923	do
1924	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1925	then
1926	if [[ $package != "dvrp_graphics+1PE" ]]
1927	then
1928	cpp_options="${cpp_options},-D__$package=__$package"
1929	else
1930	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1931	export use_seperate_pe_for_dvrp_output=true
1932	fi
1933	else
1934	if [[ $package != "dvrp_graphics+1PE" ]]
1935	then
1936	cpp_options="$cpp_options -D__$package"
1937	else
1938	cpp_options="$cpp_options -D__dvrp_graphics"
1939	export use_seperate_pe_for_dvrp_output=true
1940	fi
1941	fi
1942	done
1943	fi
1944
1945	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1946	if [[ -n $cpp_opts ]]
1947	then
1948	for popts in $cpp_opts
1949	do
1950	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1951	then
1952	cpp_options="${cpp_options},-D__$popts=__$popts"
1953	else
1954	cpp_options="$cpp_options -D__$popts"
1955	fi
1956	done
1957	fi
1958
1959	else
1960
1961
1962	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1963	if [[ $do_remote = false ]]
1964	then
1965	if [[ ! -f $executable ]]
1966	then
1967	printf "\n +++ executable file: $executable"
1968	printf "\n does not exist"
1969	locat=executable; exit
1970	fi
1971	fi
1972	fi
1973
1974
1975	# JOBMODUS FESTSTELLEN
1976	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1977	then
1978	jobmo=BATCH
1979	else
1980	jobmo=INTERACTIVE
1981	fi
1982
1983
1984	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1985	# DURCH BENUTZER ANDERWEITIG VEREINBART
1986	if [[ "$compiler_name" = "" ]]
1987	then
1988
1989	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1990	locat=compiler_name; exit
1991
1992	fi
1993
1994
1995	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1996	[[ $localhost = necriam ]] && compiler_name=mpif90
1997
1998
1999
2000	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2001	kennung=$RANDOM
2002	if [[ "$tmp_user_catalog" = "" ]]
2003	then
2004	if [[ $localhost = ibmh ]]
2005	then
2006	tmp_user_catalog=$SCRATCH
2007	elif [[ $localhost = nech ]]
2008	then
2009	tmp_user_catalog=$WRKSHR
2010	else
2011	tmp_user_catalog=/tmp
2012	fi
2013	fi
2014	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2015
2016
2017	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2018	# BESTIMMEN
2019	if [[ "$tmp_data_catalog" = "" ]]
2020	then
2021	if [[ $localhost = ibmb ]]
2022	then
2023	tmp_data_catalog=$WORK/mrun_restart_data
2024	elif [[ $localhost = nech ]]
2025	then
2026	tmp_data_catalog=$WRKSHR/mrun_restart_data
2027	else
2028	tmp_data_catalog=/tmp/mrun_restart_data
2029	fi
2030	fi
2031
2032
2033	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2034	# ERSETZEN
2035	if [[ $do_remote = false && $do_compile = true ]]
2036	then
2037	eval fopts=\"$fopts\"
2038	eval lopts=\"$lopts\"
2039	fi
2040
2041
2042
2043	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2044	fopts="$fopts $netcdf_inc $dvr_inc"
2045	lopts="$lopts $netcdf_lib $dvr_lib"
2046	ROPTS="$ropts"
2047	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2048	then
2049	XOPT="-X $numprocs"
2050	fi
2051
2052
2053
2054	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2055	# GRAMM BENOETIGT
2056	done=false
2057	while [[ $done = false ]]
2058	do
2059	cputime=$cpumax
2060	if (( $cputime == 0 ))
2061	then
2062	if [[ $do_batch = true ]]
2063	then
2064	printf "\n +++ cpu-time is undefined"
2065	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2066	printf "\n >>> "
2067	read cputime 1>/dev/null 2>&1
2068	else
2069	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2070	fi
2071	else
2072	done=true
2073	fi
2074	cpumax=$cputime
2075	done
2076
2077	(( minuten = cputime / 60 ))
2078	(( sekunden = cputime - minuten * 60 ))
2079
2080
2081	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2082	if [[ $do_batch = true ]]
2083	then
2084	done=false
2085	while [[ $done = false ]]
2086	do
2087	if (( memory == 0 ))
2088	then
2089	printf "\n +++ memory demand is undefined"
2090	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2091	printf "\n >>> "
2092	read memory 1>/dev/null 2>&1
2093	else
2094	done=true
2095	fi
2096	done
2097	fi
2098
2099
2100	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2101	if [[ $do_remote = true && -z $remote_username ]]
2102	then
2103	while [[ -z $remote_username ]]
2104	do
2105	printf "\n +++ username on remote host \"$host\" is undefined"
2106	printf "\n >>> Please type username:"
2107	printf "\n >>> "
2108	read remote_username
2109	done
2110	mc="$mc -u$remote_username"
2111	fi
2112
2113
2114	# set module load command and export for subjob
2115	if [[ "$modules" != "" ]]
2116	then
2117	export module_calls="module load ${modules};"
2118	fi
2119
2120
2121	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2122	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2123	then
2124	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2125	then
2126	mpilib=mpt
2127	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2128	then
2129	mpilib=mvapich
2130	fi
2131	fi
2132
2133
2134
2135	###########################################################################
2136	# HEADER-AUSGABE
2137	###########################################################################
2138
2139
2140	calltime=$(date)
2141	printf "\n"
2142	# [[ $silent = false ]] && clear
2143	printf "#--------------------------------------------------------------# \n"
2144	printf "\| $version$calltime \| \n"
2145	printf "\| \| \n"
2146	spalte1="called on:"; spalte2=$localhost_realname
2147	printf "\| $spalte1$spalte2 \| \n"
2148	if [[ $local_compile = false ]]
2149	then
2150	if [[ $do_remote = true ]]
2151	then
2152	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2153	else
2154	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2155	fi
2156	else
2157	spalte1="compiling test only!"; spalte2=""
2158	fi
2159	printf "\| $spalte1$spalte2 \| \n"
2160	if [[ -n $numprocs ]]
2161	then
2162	spalte1="number of PEs:"; spalte2=$numprocs
2163	printf "\| $spalte1$spalte2 \| \n"
2164	fi
2165	if [[ -n $tasks_per_node ]]
2166	then
2167	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2168	printf "\| $spalte1$spalte2 \| \n"
2169	fi
2170	if [[ $threads_per_task != 1 ]]
2171	then
2172	spalte1="threads per task:"; spalte2="$threads_per_task"
2173	printf "\| $spalte1$spalte2 \| \n"
2174	fi
2175	printf "\| \| \n"
2176	if [[ $do_compile = true ]]
2177	then
2178	if [[ "$mopts" != "" ]]
2179	then
2180	spalte1="make options:"; spalte2=$mopts
2181	printf "\| $spalte1$spalte2 \| \n"
2182	zeile=$(echo "$mopts" \| cut -c41-)
2183	while [[ "$zeile" != "" ]]
2184	do
2185	spalte1=""
2186	spalte2=$zeile
2187	printf "\| $spalte1$spalte2 \| \n"
2188	zeile=$(echo "$zeile" \| cut -c41-)
2189	done
2190	fi
2191
2192	spalte1="cpp directives:"; spalte2=$cpp_options
2193	printf "\| $spalte1$spalte2 \| \n"
2194	zeile=$(echo "$cpp_options" \| cut -c41-)
2195	while [[ "$zeile" != "" ]]
2196	do
2197	spalte1=""
2198	spalte2=$zeile
2199	printf "\| $spalte1$spalte2 \| \n"
2200	zeile=$(echo "$zeile" \| cut -c41-)
2201	done
2202
2203	spalte1="compiler options:"; spalte2="$fopts"
2204	printf "\| $spalte1$spalte2 \| \n"
2205	zeile=$(echo "$fopts" \| cut -c41-)
2206	while [[ "$zeile" != "" ]]
2207	do
2208	spalte1=""
2209	spalte2=$zeile
2210	printf "\| $spalte1$spalte2 \| \n"
2211	zeile=$(echo "$zeile" \| cut -c41-)
2212	done
2213
2214	spalte1="linker options:"; spalte2=$lopts
2215	printf "\| $spalte1$spalte2 \| \n"
2216	zeile=$(echo "$lopts" \| cut -c41-)
2217	while [[ "$zeile" != "" ]]
2218	do
2219	spalte1=""
2220	spalte2=$zeile
2221	printf "\| $spalte1$spalte2 \| \n"
2222	zeile=$(echo "$zeile" \| cut -c41-)
2223	done
2224
2225	spalte1="modules to be load:"; spalte2=$modules
2226	printf "\| $spalte1$spalte2 \| \n"
2227	zeile=$(echo "$modules" \| cut -c41-)
2228	while [[ "$zeile" != "" ]]
2229	do
2230	spalte1=""
2231	spalte2=$zeile
2232	printf "\| $spalte1$spalte2 \| \n"
2233	zeile=$(echo "$zeile" \| cut -c41-)
2234	done
2235
2236	spalte1="main program":; spalte2=$mainprog
2237	printf "\| $spalte1$spalte2 \| \n"
2238	else
2239	spalte1=executable:; spalte2=$executable
2240	printf "\| $spalte1$spalte2 \| \n"
2241	fi
2242	printf "\| \| \n"
2243	spalte1="base name of files":; spalte2=$fname
2244	printf "\| $spalte1$spalte2 \| \n"
2245	if [[ $fname != $afname ]]
2246	then
2247	spalte1="base name of input files":; spalte2=$afname
2248	printf "\| $spalte1$spalte2 \| \n"
2249	fi
2250	spalte1="INPUT control list":; spalte2=$input_list
2251	printf "\| $spalte1$spalte2 \| \n"
2252	spalte1="OUTPUT control list":; spalte2=$output_list
2253	printf "\| $spalte1$spalte2 \| \n"
2254
2255	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2256	then
2257	spalte1="memory demand / PE":; spalte2="$memory MB"
2258	printf "\| $spalte1$spalte2 \| \n"
2259	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2260	printf "\| $spalte1$spalte2 \| \n"
2261	fi
2262
2263	if [[ $do_compile = true ]]
2264	then
2265	printf "\| \| \n"
2266	printf "\| Files to be compiled: \| \n"
2267	zeile=$source_list
2268	while [[ "$zeile" != "" ]]
2269	do
2270	spalte3=$zeile
2271	printf "\| $spalte3 \| \n"
2272	zeile=$(echo "$zeile" \| cut -c61-)
2273	done
2274	fi
2275	printf "#--------------------------------------------------------------#"
2276
2277
2278
2279	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2280	if [[ $do_trace = true ]]
2281	then
2282	(( i = 0 ))
2283	while (( i < iin ))
2284	do
2285	(( i = i + 1 ))
2286	if (( i == 1 ))
2287	then
2288	printf "\n\n >>> INPUT-file assignments:\n"
2289	fi
2290	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2291	done
2292	(( i = 0 ))
2293	while (( i < iout ))
2294	do
2295	(( i = i + 1 ))
2296	if (( i == 1 ))
2297	then
2298	printf "\n\n >>> OUTPUT-file assignments:\n"
2299	fi
2300	printf "\n ${localout[$i]} : ${pathout[$i]}"
2301	done
2302	(( i = 0 ))
2303	while (( i < iic ))
2304	do
2305	(( i = i + 1 ))
2306	if (( i == 1 ))
2307	then
2308	printf "\n\n >>> INPUT-commands:\n"
2309	fi
2310	printf "\n ${in_command[$i]}"
2311	done
2312	(( i = 0 ))
2313	while (( i < ioc ))
2314	do
2315	(( i = i + 1 ))
2316	if (( i == 1 ))
2317	then
2318	printf "\n\n >>> OUTPUT-commands:\n"
2319	fi
2320	printf "\n ${out_command[$i]}"
2321	done
2322	fi
2323
2324
2325	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2326	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2327	then
2328	antwort=dummy
2329	printf "\n\n"
2330	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2331	do
2332	printf " >>> everything o.k. (y/n) ? "
2333	read antwort
2334	done
2335	if [[ $antwort = n \|\| $antwort = N ]]
2336	then
2337	locat=user_abort; (( iec = 0 )); exit
2338	fi
2339	if [[ $do_batch = true ]]
2340	then
2341	printf " >>> batch-job will be created and submitted"
2342	else
2343	if [[ $local_compile = false ]]
2344	then
2345	printf " >>> MRUN will now continue to execute on this machine"
2346	else
2347	printf " >>> a test compilation will now be carried out on this machine"
2348	fi
2349	fi
2350	fi
2351
2352
2353
2354
2355	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2356	# CHENDE AKTIONEN DURCHGEFUEHRT
2357	if [[ $do_batch = false ]]
2358	then
2359
2360
2361	# TEMPORAEREN KATALOG ERZEUGEN
2362	mkdir -p $TEMPDIR
2363	chmod go+rx $TEMPDIR
2364	tmpcreate=true
2365
2366	# set striping on lustre file system
2367	# if [[ $localhost = lcsgih ]]
2368	# then
2369	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2370	# lfs getstripe $TEMPDIR
2371	# fi
2372
2373
2374	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2375	# TEMPORAERES VERZEICHNIS KOPIEREN
2376	if [[ $do_compile = true ]]
2377	then
2378
2379	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2380	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2381	if [[ $localhost = nech ]]
2382	then
2383	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2384	if mkdir -p $TEMPDIR_COMPILE
2385	then
2386	printf "\n *** \"$TEMPDIR_COMPILE\" "
2387	printf "\n is generated as temporary directory for cross compiling\n"
2388	else
2389	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2390	printf "\n needed for cross compilation failed"
2391	locat=compile
2392	exit
2393	fi
2394	else
2395	TEMPDIR_COMPILE=$TEMPDIR
2396	fi
2397
2398
2399	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2400	line=""
2401	grep "%depository_path" $config_file > tmp_mrun
2402	while read line
2403	do
2404	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2405	then
2406	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2407	then
2408	global_depository_path=`echo $line \| cut -d" " -s -f2`
2409	fi
2410	fi
2411	done < tmp_mrun
2412
2413	line=""
2414	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2415	while read line
2416	do
2417	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2418	then
2419	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2420	then
2421	local_depository_path=`echo $line \| cut -d" " -s -f2`
2422	fi
2423	fi
2424	done < tmp_mrun
2425
2426	if [[ "$local_depository_path" = "" ]]
2427	then
2428	if [[ "$global_depository_path" != "" ]]
2429	then
2430	local_depository_path=$global_depository_path
2431	else
2432	printf "\n\n +++ no depository path found in configuration file"
2433	printf "\n for local host \"$localhost\" "
2434	printf "\n please set \"\%depository_path\" in configuration file\n"
2435	locat=config_file; exit
2436	fi
2437	fi
2438	eval local_depository_path=$local_depository_path
2439	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2440	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2441
2442
2443	basename=`print $mainprog \| cut -f1 -d"."`
2444	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2445	if [[ ! -f $make_depository ]]
2446	then
2447	printf "\n"
2448	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2449	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2450	else
2451	cp $make_depository $TEMPDIR_COMPILE
2452	cd $TEMPDIR_COMPILE
2453	tar -xf $make_depository > /dev/null 2>&1
2454	cd - > /dev/null
2455	fi
2456
2457	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2458
2459	else
2460
2461	cp $executable ${TEMPDIR}/a.out
2462
2463	fi
2464
2465
2466	# WECHSEL IN TEMPORAEREN KATALOG
2467	cd $TEMPDIR
2468	printf "\n *** changed to temporary directory: $TEMPDIR"
2469
2470
2471	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2472	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2473	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2474	# ERMITTELN
2475	(( i = 0 ))
2476	while (( i < iout ))
2477	do
2478	(( i = i + 1 ))
2479	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2480	then
2481	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2482	else
2483	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2484	fi
2485	done
2486
2487
2488	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2489	if [[ $do_compile = true ]]
2490	then
2491
2492
2493	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2494	printf "\n\n\n *** compilation starts \n$striche\n"
2495	printf " *** compilation with make using following options:\n"
2496	printf " make depository: $make_depository"
2497	if [[ "$mopts" != "" ]]
2498	then
2499	printf " make options: $mopts\n"
2500	fi
2501	printf " compilername: $compiler_name\n"
2502	printf " compiler options: $fopts\n"
2503	printf " preprocessor directives: $cpp_options \n"
2504	printf " linker options: $lopts \n"
2505	if [[ "$modules" != "" ]]
2506	then
2507	printf " modules to be load: $modules \n"
2508	fi
2509	printf " source code files: $source_list \n"
2510
2511	if [[ $localhost = nech ]]
2512	then
2513	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2514	cp $TEMPDIR_COMPILE/a.out .
2515	[[ $? != 0 ]] && compile_error=true
2516	rm -rf $TEMPDIR_COMPILE
2517	elif [[ $localhost = ibmh ]]
2518	then
2519	printf " compiler is called via ssh on \"plogin1\" \n"
2520	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2521	[[ ! -f a.out ]] && compile_error=true
2522	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2523	elif [[ $localhost = lcsgib ]]
2524	then
2525	printf " compiler is called via ssh on \"bicegate0\" \n"
2526	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2527	[[ ! -f a.out ]] && compile_error=true
2528	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2529	elif [[ $localhost = lcsgih ]]
2530	then
2531	printf " compiler is called via ssh on \"hicegate0\" \n"
2532	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2533	[[ ! -f a.out ]] && compile_error=true
2534	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2535	else
2536	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2537	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2538	[[ "$module_calls" != "" ]] && eval $module_calls
2539	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2540	fi
2541
2542	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2543	then
2544	printf "\n +++ error occured while compiling or linking"
2545	locat=compile
2546
2547	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2548	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2549	# then
2550	exit
2551	# else
2552	# locat=normal
2553	# fi
2554	else
2555	printf "$striche\n *** compilation finished \n"
2556	fi
2557	fi
2558
2559
2560	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2561	if [[ $local_compile = true ]]
2562	then
2563	cd $HOME
2564	rm -rf $TEMPDIR
2565	locat=local_compile; exit
2566	fi
2567
2568
2569	# BEREITSTELLEN DER INPUT-DATEIEN
2570	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2571	(( i = 0 ))
2572	while (( i < iin ))
2573	do
2574	(( i = i + 1 ))
2575	if (( i == 1 ))
2576	then
2577	printf "\n\n *** providing INPUT-files:\n$striche"
2578	fi
2579
2580
2581	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2582	if [[ "${transin[$i]}" = unavailable ]]
2583	then
2584	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2585	then
2586	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2587	printf "\n is not available!"
2588	else
2589	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2590	printf "\n is not available!"
2591	fi
2592	continue
2593	fi
2594
2595	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2596	files_for_pes=false; datentyp=file
2597	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2598	then
2599	files_for_pes=true; datentyp=directory
2600	actionin[$i]=""
2601	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2602	then
2603	actionin[$i]=""
2604	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2605	then
2606	files_for_pes=true; datentyp=directory
2607	actionin[$i]="ar"
2608	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2609	then
2610	actionin[$i]="ar"
2611	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2612	then
2613	files_for_pes=true; datentyp=directory
2614	actionin[$i]="fl"
2615	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2616	then
2617	actionin[$i]="fl"
2618	fi
2619
2620	if [[ $files_for_pes = true ]]
2621	then
2622	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2623	else
2624	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2625	fi
2626
2627	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2628	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2629	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2630	# SERVER ZU HOLEN
2631	if [[ "${actionin[$i]}" = fl ]]
2632	then
2633	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2634	if [[ $files_for_pes = false ]]
2635	then
2636	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2637	then
2638	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2639	got_tmp[$i]=true
2640	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2641	then
2642	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2643	printf "\n *** trying to use backup copy in \"$WORK\" "
2644	cp $WORK/${frelin[$i]} ${localin[$i]}
2645	else
2646	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2647	printf "\n or \"$tmp_data_catalog\" does not exist!"
2648	printf "\n *** trying to get copy from archive"
2649	actionin[$i]=ar
2650	fi
2651	else
2652	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2653	then
2654	mkdir ${localin[$i]}
2655	cd $tmp_data_catalog/${frelin[$i]}
2656	for file in $(ls *)
2657	do
2658	ln $file $TEMPDIR/${localin[$i]}
2659	done
2660	cd $TEMPDIR
2661	got_tmp[$i]=true
2662	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2663	then
2664	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2665	printf "\n *** trying to use backup copy in \"$WORK\" "
2666	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2667	else
2668	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2669	printf "\n or \"$tmp_data_catalog\" does not exist!"
2670	printf "\n *** trying to get copy from archive"
2671	actionin[$i]=ar
2672	fi
2673	fi
2674	fi
2675
2676
2677	# DATEI LIEGT AUF ARCHIV-SERVER
2678	if [[ "${actionin[$i]}" = ar ]]
2679	then
2680
2681	if [[ $files_for_pes = false ]]
2682	then
2683	printf "\n file will be restored from archive-system ($archive_system)!"
2684	else
2685	printf "\n directory will be restored from archive-system ($archive_system)!"
2686	fi
2687
2688	file_restored=false
2689
2690	if [[ $archive_system = asterix ]]
2691	then
2692	do_stagein=true
2693	(( stagein_anz = 0 ))
2694	while [[ $do_stagein = true ]]
2695	do
2696	if [[ $files_for_pes = false ]]
2697	then
2698	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2699	else
2700	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2701	fi
2702	cat STAGEIN_OUTPUT
2703	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2704	then
2705	file_restored=true
2706	do_stagein=false
2707	else
2708	(( stagein_anz = stagein_anz + 1 ))
2709	if (( stagein_anz == 10 ))
2710	then
2711	printf "\n +++ stagein stoped after 10 tries"
2712	locat=stage
2713	exit
2714	fi
2715	printf "\n +++ restoring from archive failed, trying again:"
2716	sleep 900
2717	fi
2718	done
2719	elif [[ $archive_system = DMF ]]
2720	then
2721	if [[ $files_for_pes = false ]]
2722	then
2723	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2724	locat=DMF
2725	exit
2726	else
2727	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2728	cp -r $ARCHIVE/${frelin[$i]} $PWD
2729	file_restored=true
2730	fi
2731	elif [[ $archive_system = tivoli ]]
2732	then
2733	if [[ $files_for_pes = false ]]
2734	then
2735	if [[ $localhost = lcsgih ]]
2736	then
2737	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2738	else
2739	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2740	fi
2741	else
2742	(( inode = 0 ))
2743	while (( inode < nodes ))
2744	do
2745	if [[ $localhost = lcsgih ]]
2746	then
2747	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2748	else
2749	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2750	fi
2751	(( inode = inode + 1 ))
2752	done
2753	fi
2754	file_restored=true
2755	elif [[ $archive_system = ut ]]
2756	then
2757	if [[ $files_for_pes = false ]]
2758	then
2759	cp $UT/${frelin[$i]} .
2760	else
2761	(( inode = 0 ))
2762	while (( inode < nodes ))
2763	do
2764	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2765	(( inode = inode + 1 ))
2766	done
2767	fi
2768	file_restored=true
2769	else
2770	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2771	locat=rearchive
2772	exit
2773	fi
2774
2775	if [[ $file_restored = true ]]
2776	then
2777
2778	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2779	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2780	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2781	if [[ $files_for_pes = false ]]
2782	then
2783	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2784	else
2785	mkdir $tmp_data_catalog/${frelin[$i]}
2786	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2787	fi
2788	got_tmp[$i]=true
2789
2790	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2791	mv ${frelin[$i]} ${localin[$i]}
2792
2793	fi
2794	fi
2795
2796
2797	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2798	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2799	then
2800
2801	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2802	then
2803
2804	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2805	printf "\n file will be provided for $numprocs processors"
2806	mkdir ${localin[$i]}
2807	ival=$numprocs
2808	(( ii = 0 ))
2809	while (( ii <= ival-1 ))
2810	do
2811	if (( ii < 10 ))
2812	then
2813	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2814	elif (( ii < 100 ))
2815	then
2816	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2817	elif (( ii < 1000 ))
2818	then
2819	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2820	else
2821	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2822	fi
2823	(( ii = ii + 1 ))
2824	done
2825
2826	else
2827
2828	if [[ $files_for_pes = true ]]
2829	then
2830
2831	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2832	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2833	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2834	# PER MOVE UMBENANNT WERDEN
2835	printf "\n providing $numprocs files for the respective processors"
2836	mkdir ${localin[$i]}
2837	if [[ $link_local_input = true ]]
2838	then
2839	printf " using ln -f\n"
2840	cd ${absnamein[$i]}
2841	for file in $(ls *)
2842	do
2843	ln -f $file ${localin[$i]}
2844	done
2845	cd $TEMPDIR
2846	fi
2847	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2848	if [[ ! -f "${localin[$i]}/_0000" ]]
2849	then
2850	if [[ $link_local_input = true ]]
2851	then
2852	printf " ln failed for .../_0000, using cp...\n"
2853	fi
2854	cp -r ${absnamein[$i]}/* ${localin[$i]}
2855	fi
2856
2857	else
2858	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2859	if [[ $link_local_input = true ]]
2860	then
2861	printf " using ln -f\n"
2862	ln -f ${absnamein[$i]} ${localin[$i]}
2863	fi
2864	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2865	if [[ ! -f "${localin[$i]}" ]]
2866	then
2867	if [[ $link_local_input = true ]]
2868	then
2869	printf " ln failed, using cp...\n"
2870	fi
2871	cp ${absnamein[$i]} ${localin[$i]}
2872	fi
2873	fi
2874	fi
2875	fi
2876
2877	done
2878	if (( i != 0 ))
2879	then
2880	printf "\n$striche\n *** all INPUT-files provided \n"
2881	fi
2882
2883
2884	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2885	(( i = 0 ))
2886	while (( i < iic ))
2887	do
2888	(( i = i + 1 ))
2889	if (( i == 1 ))
2890	then
2891	printf "\n\n *** execution of INPUT-commands:\n$striche"
2892	fi
2893	printf "\n >>> ${in_command[$i]}"
2894	eval ${in_command[$i]}
2895	if (( i == iic ))
2896	then
2897	printf "\n$striche\n"
2898	fi
2899	done
2900
2901
2902	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2903	cpurest=${cpumax}.
2904
2905
2906	# START DVR STREAMING SERVER
2907	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2908	then
2909	if [[ "$dvr_server" != "" ]]
2910	then
2911
2912	printf "\n\n *** preparing the dvr streaming server configuration file"
2913
2914	# Check, if a dvr server is already running
2915	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2916	if [[ "$running_dvrserver_id" != "" ]]
2917	then
2918
2919	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2920	printf "\n This server is used instead starting a new one!"
2921	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2922
2923	else
2924
2925	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2926	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2927	then
2928	cp ${PALM_BIN}/.dvrserver.config .
2929
2930	# Entering the BASEDIR, UID and GID into this file
2931	user_id=`id -u`
2932	group_id=`id -g`
2933	# & is needed as seperator, because TEMPDIR contains /
2934	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2935	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2936	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2937	mv .dvrserver.3 .dvrserver.config
2938	rm .dvrserver.1 .dvrserver.2
2939
2940	# Start dvr server in background, get his id and print on terminal
2941	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2942	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2943	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2944	local_dvrserver_running=.TRUE.
2945	else
2946	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2947	printf "\n \"$PALM_BIN\" "
2948	locat=dvr
2949	exit
2950	fi
2951
2952	fi
2953
2954	else
2955	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2956	fi
2957	fi
2958
2959
2960	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2961	# LESEN VON PALM)
2962	cat > ENVPAR << %%END%%
2963	&envpar run_identifier = '$fname', host = '$localhost',
2964	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2965	maximum_cpu_time_allowed = ${cpumax}.,
2966	revision = '$global_revision',
2967	local_dvrserver_running = $local_dvrserver_running /
2968
2969	%%END%%
2970
2971
2972	# PROGRAMMSTART
2973	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2974	PATH=$PATH:$TEMPDIR
2975
2976	# MPI debug option (argument checking, slows down execution due to increased latency)
2977	if [[ "$mpi_debug" = true ]]
2978	then
2979	export MPI_CHECK_ARGS=1
2980	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2981	fi
2982
2983	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2984	then
2985	if [[ "$ENVIRONMENT" = BATCH ]]
2986	then
2987	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2988	then
2989	printf "\n +++ debug is allowed in interactive mode only"
2990	locat=debug
2991	exit
2992	fi
2993	fi
2994	if [[ $localhost = decalpha ]]
2995	then
2996	dxladebug a.out
2997	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2998	then
2999
3000	# SETUP THE IBM MPI ENVIRONMENT
3001	export MP_SHARED_MEMORY=yes
3002	export AIXTHREADS_SCOPE=S
3003	export OMP_NUM_THREADS=$threads_per_task
3004	export AUTHSTATE=files
3005	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3006
3007	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3008	export MP_ADAPTER_USE=shared
3009	export MP_CPU_USE=multiple
3010	export MP_TIMEOUT=1200
3011
3012	unset MP_TASK_AFFINITY
3013
3014	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3015	#(( ii = 1 ))
3016	#while (( ii <= $numprocs ))
3017	#do
3018	# echo $localhost_realname >> hostfile
3019	# (( ii = ii + 1 ))
3020	#done
3021	#export MP_HOSTFILE=hostfile
3022
3023	if [[ "$LOADLBATCH" = yes ]]
3024	then
3025	totalview poe a.out $ROPTS
3026	else
3027	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3028	export TVDSVRLAUNCHCMD=ssh
3029	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3030	fi
3031	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3032	then
3033	# CURRENTLY NO DEBUGGER ON LCSGI
3034	if [[ $run_coupled_model = true ]]
3035	then
3036	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3037	locat=debug
3038	exit
3039	else
3040	echo "no_coupling" > runfile_atmos
3041	fi
3042	(( ii = $numprocs / $threads_per_task ))
3043	export OMP_NUM_THREADS=$threads_per_task
3044	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3045	if [[ $threads_per_task != 1 ]]
3046	then
3047	printf "\n threads per task: $threads_per_task"
3048	fi
3049	printf "\n\n"
3050	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3051	then
3052	# export MPI_LAUNCH_TIMEOUT=360
3053	if [[ "$totalview" = true ]]
3054	then
3055	printf "\n running totalview debugger"
3056	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3057	else
3058	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3059	fi
3060	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3061	then
3062	# ulimit -s 300000 # A too large stack size causes problems
3063	# export MV2_NUM_PORTS=2
3064	# export MV2_CPU_MAPPING=0:1:2:3
3065	if [[ "$totalview" = true ]]
3066	then
3067	printf "\n running totalview debugger"
3068	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3069	else
3070	mpiexec ./a.out $ROPTS < runfile_atmos
3071	fi
3072	fi
3073	else
3074	printf "\n +++ no debug available on \"$localhost\" "
3075	printf "\n or not implemented in mrun so far"
3076	locat=debug
3077	exit
3078	fi
3079	else
3080	if [[ -n $numprocs ]]
3081	then
3082	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3083	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3084	then
3085	# SETUP THE IBM MPI ENVIRONMENT
3086	if [[ $host != ibmh ]]
3087	then
3088	export MP_SHARED_MEMORY=yes
3089	export AIXTHREAD_SCOPE=S
3090	export OMP_NUM_THREADS=$threads_per_task
3091	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3092	export AUTHSTATE=files
3093	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3094	# export MP_PRINTENV=yes
3095
3096	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3097	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3098	export MP_WAIT_MODE=poll
3099	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3100	fi
3101	if [[ "$LOADLBATCH" = yes ]]
3102	then
3103	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3104	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3105	then
3106	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3107	else
3108	if [[ $run_coupled_model = false ]]
3109	then
3110	if [[ "$ocean_file_appendix" = true ]]
3111	then
3112	echo "precursor_ocean" > runfile_atmos
3113	else
3114	echo "precursor_atmos" > runfile_atmos
3115	fi
3116	else
3117	(( iia = $numprocs_atmos / $threads_per_task ))
3118	(( iio = $numprocs_ocean / $threads_per_task ))
3119	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3120	printf "\n using $coupled_mode coupling"
3121	printf "\n\n"
3122	echo "coupled_run $iia $iio" > runfile_atmos
3123	fi
3124	poe ./a.out $ROPTS < runfile_atmos
3125	fi
3126	else
3127	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3128	then
3129	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3130	elif [[ $localhost = ibmy ]]
3131	then
3132	if [[ -f $hostfile ]]
3133	then
3134	cp $hostfile hostfile
3135	else
3136	(( ii = 1 ))
3137	while (( ii <= $numprocs ))
3138	do
3139	echo $localhost_realname >> hostfile
3140	(( ii = ii + 1 ))
3141	done
3142	fi
3143	export MP_HOSTFILE=hostfile
3144	if [[ $run_coupled_model = false ]]
3145	then
3146	if [[ "$ocean_file_appendix" = true ]]
3147	then
3148	echo "precursor_ocean" > runfile_atmos
3149	else
3150	echo "precursor_atmos" > runfile_atmos
3151	fi
3152	else
3153	(( iia = $numprocs_atmos / $threads_per_task ))
3154	(( iio = $numprocs_ocean / $threads_per_task ))
3155	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3156	printf "\n using $coupled_mode coupling"
3157	printf "\n\n"
3158	echo "coupled_run $iia $iio" > runfile_atmos
3159	fi
3160	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3161
3162	else
3163	if [[ "$host_file" = "" ]]
3164	then
3165	printf "\n +++ no hostfile given in configuration file"
3166	locat=config_file
3167	exit
3168	else
3169	eval host_file=$host_file
3170	fi
3171	export MP_HOSTFILE=$host_file
3172	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3173	fi
3174	fi
3175	elif [[ $host = nech \|\| $host = necriam ]]
3176	then
3177	(( ii = nodes ))
3178	if [[ $ii = 1 ]]
3179	then
3180	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3181	export MPIPROGINF=YES
3182	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3183	echo "*** execution on single node with mpirun"
3184	mpirun -np $numprocs ./a.out $ROPTS
3185	else
3186	(( i = 0 ))
3187	while (( i < ii ))
3188	do
3189	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3190	(( i = i + 1 ))
3191	done
3192
3193	echo "#!/bin/sh" > mpi_exec_shell
3194	echo " " >> mpi_exec_shell
3195	echo "set -u" >> mpi_exec_shell
3196	echo "F_ERRCNT=0" >> mpi_exec_shell
3197	echo "MPIPROGINV=YES" >> mpi_exec_shell
3198	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3199	echo "cpurest=$cpurest" >> mpi_exec_shell
3200	echo "fname=$fname" >> mpi_exec_shell
3201	echo "localhost=$localhost" >> mpi_exec_shell
3202	echo "return_addres=$return_addres" >> mpi_exec_shell
3203	echo "return_username=$return_username" >> mpi_exec_shell
3204	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3205	echo "write_binary=$write_binary" >> mpi_exec_shell
3206	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3207	echo " " >> mpi_exec_shell
3208	echo "export F_ERRCNT" >> mpi_exec_shell
3209	echo "export MPIPROGINV" >> mpi_exec_shell
3210	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3211	echo "export cpurest" >> mpi_exec_shell
3212	echo "export fname" >> mpi_exec_shell
3213	echo "export localhost" >> mpi_exec_shell
3214	echo "export return_addres" >> mpi_exec_shell
3215	echo "export return_username" >> mpi_exec_shell
3216	echo "export tasks_per_node" >> mpi_exec_shell
3217	echo "export write_binary" >> mpi_exec_shell
3218	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3219	echo " " >> mpi_exec_shell
3220	echo "exec ./a.out" >> mpi_exec_shell
3221
3222	chmod u+x mpi_exec_shell
3223	export MPIPROGINF=YES
3224	mpirun -f multinode_config &
3225	wait
3226
3227	fi
3228	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3229	then
3230
3231	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3232	# DOES NOT EXIST
3233	if [[ $host != lcsgih && $host != lcsgib ]]
3234	then
3235	if [[ -f $hostfile ]]
3236	then
3237	cp $hostfile hostfile
3238	else
3239	(( ii = 1 ))
3240	while (( ii <= $numprocs / $threads_per_task ))
3241	do
3242	echo $localhost_realname >> hostfile
3243	(( ii = ii + 1 ))
3244	done
3245	fi
3246	eval zeile=\"`head -n $ii hostfile`\"
3247	printf "\n *** running on: $zeile"
3248	fi
3249
3250	(( ii = $numprocs / $threads_per_task ))
3251	export OMP_NUM_THREADS=$threads_per_task
3252	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3253	if [[ $threads_per_task != 1 ]]
3254	then
3255	# increase stack size to unlimited, because large runs
3256	# may abort otherwise
3257	ulimit -Ss unlimited
3258	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3259	fi
3260	if [[ $run_coupled_model = false ]]
3261	then
3262	if [[ "$ocean_file_appendix" = true ]]
3263	then
3264	echo "precursor_ocean" > runfile_atmos
3265	else
3266	echo "precursor_atmos" > runfile_atmos
3267	fi
3268	printf "\n\n"
3269	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3270	then
3271	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3272	then
3273	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3274	# export MPI_DSM_DISTRIBUTE=1
3275	# MPI_DSM_CPULIST: pin MPI processes to cores
3276	if [[ $use_openmp = false ]]
3277	then
3278	if [[ "$sgi_feature" = ice2 ]]
3279	then
3280	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3281	else
3282	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3283	fi
3284	fi
3285	# MPI_IB_RAILS: use both IB rails on ICE2
3286	export MPI_BUFS_PER_HOST=512
3287	export MPI_IB_RAILS=2
3288	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3289	export MPI_CONNECTIONS_THRESHOLD=8192
3290	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3291	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3292
3293	# next is test for openmp usage
3294	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3295	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3296	then
3297	export MV2_NUM_PORTS=2
3298	# The default setting of MV2_CPU_MAPPING gives best results
3299	# export MV2_ENABLE_AFFINITY=1
3300	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3301	# if [[ "$sgi_feature" = ice2 ]]
3302	# then
3303	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3304	# else
3305	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3306	# fi
3307	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3308	if [[ $threads_per_task != 1 ]]
3309	then
3310	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3311	else
3312	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3313	fi
3314	fi
3315	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3316	then
3317	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3318	else
3319	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3320	fi
3321	else
3322
3323	# currently there is no full MPI-2 support on ICE and XT4
3324	(( iia = $numprocs_atmos / $threads_per_task ))
3325	(( iio = $numprocs_ocean / $threads_per_task ))
3326	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3327	printf "\n using $coupled_mode coupling"
3328	printf "\n\n"
3329
3330	if [[ $coupled_mode = "mpi2" ]]
3331	then
3332	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3333	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3334	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3335	then
3336
3337	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3338	then
3339	# export MPI_LAUNCH_TIMEOUT=360
3340	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3341	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3342	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3343	then
3344	# ulimit -s 300000 # A too large stack size causes problems
3345	# export MV2_NUM_PORTS=2
3346	# export MV2_CPU_MAPPING=0:1:2:3
3347	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3348	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3349	fi
3350
3351	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3352	then
3353
3354	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3355	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3356
3357	else
3358	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3359	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3360	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3361	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3362	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3363	fi
3364	wait
3365
3366	else
3367
3368	echo "coupled_run $iia $iio" > runfile_atmos
3369	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3370	then
3371
3372	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3373	then
3374	# export MPI_LAUNCH_TIMEOUT=360
3375	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3376	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3377	then
3378	# ulimit -s 300000 # A too large stack size causes problems
3379	# export MV2_NUM_PORTS=2
3380	# export MV2_CPU_MAPPING=0:1:2:3
3381	mpiexec ./a.out $ROPTS < runfile_atmos
3382	fi
3383
3384	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3385	then
3386
3387	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3388
3389	elif [[ $host = lck ]]
3390	then
3391	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3392	fi
3393	wait
3394	fi
3395
3396	fi
3397	elif [[ $host = decalpha ]]
3398	then
3399	dmpirun -np $numprocs a.out $ROPTS
3400	elif [[ $host = lckyoto ]]
3401	then
3402	set -xv
3403	export P4_RSHCOMMAND=plesh
3404	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3405	if [[ "$ENVIRONMENT" = BATCH ]]
3406	then
3407	if [[ "$cond2" = fujitsu ]]
3408	then
3409	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3410	elif [[ "cond2" = pgi ]]
3411	then
3412	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3413	else
3414	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3415	fi
3416	else
3417	if [[ "$cond2" = "" ]]
3418	then
3419	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3420	else
3421	mpirun -np $numprocs ./a.out $ROPTS
3422	fi
3423	fi
3424	set +xv
3425	elif [[ $host = lctit ]]
3426	then
3427	export runfile=runfile.$kennung
3428
3429	echo "cd $PWD" > $runfile
3430	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3431	echo "export cpurest=$cpurest" >> $runfile
3432	echo "export fname=$fname" >> $runfile
3433	echo "export localhost=$localhost" >> $runfile
3434	echo "export return_addres=$return_addres" >> $runfile
3435	echo "export return_username=$return_username" >> $runfile
3436	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3437	echo "export write_binary=$write_binary" >> $runfile
3438	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3439	echo "./a.out" >> $runfile
3440	chmod u+x $runfile
3441
3442	if [[ "$QUEUE" = interactive ]]
3443	then
3444	mpirun -np $numprocs a.out $ROPTS
3445	else
3446	(( mem_tsubame = $memory / 1024.0 ))
3447	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3448	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3449	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3450	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3451	fi
3452
3453	rm $runfile
3454	else
3455	mpprun -n $numprocs a.out $ROPTS
3456	fi
3457	[[ $? != 0 ]] && execution_error=true
3458
3459
3460	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3461	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3462	then
3463	apprentice
3464	fi
3465	else
3466	a.out $ROPTS
3467	fi
3468	fi
3469	if [[ $? != 0 \|\| $execution_error = true ]]
3470	then
3471
3472	# ABBRUCH BEI LAUFZEITFEHLER
3473	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3474	printf "\n +++ runtime error occured"
3475	locat=execution
3476	exit
3477	else
3478	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3479	printf "\n$striche\n *** execution finished \n"
3480
3481	# Stop the dvr streaming server and process the dvr output in order
3482	# to create dvrs- and html-files containing all streams
3483	if [[ "$dvrserver_id" != "" ]]
3484	then
3485	kill $dvrserver_id
3486	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3487
3488	# If there is a directory, data have been output by the
3489	# streaming server. Otherwise, user has chosen dvrp_output=local
3490	if [[ -d DATA_DVR ]]
3491	then
3492
3493	# Add the current dvr configuration file to the dvr output
3494	# directory
3495	cp .dvrserver.config DATA_DVR
3496
3497	# Process the dvr output (option -s for also generating
3498	# sequence mode data)
3499	process_dvr_output -d DATA_DVR -f $fname -s
3500
3501	else
3502
3503	# Process the local output
3504	process_dvr_output -l -d DATA_DVR -f $fname
3505
3506	fi
3507
3508	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3509	then
3510
3511	# Process dvr output generated in local mode (dvrp_output=local)
3512	process_dvr_output -l -d DATA_DVR -f $fname
3513
3514	fi
3515	fi
3516
3517
3518
3519	# Call of combine_plot_fields in order to merge single files written
3520	# by each PE into one file.
3521	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3522	then
3523	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3524	printf "\n 2d- and/or 3d-data may be incomplete!"
3525	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3526	else
3527	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3528	combine_plot_fields${block}.x
3529	fi
3530
3531
3532
3533	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3534	(( i = 0 ))
3535	while (( i < ioc ))
3536	do
3537	(( i = i + 1 ))
3538	if (( i == 1 ))
3539	then
3540	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3541	fi
3542	printf "\n >>> ${out_command[$i]}"
3543	eval ${out_command[$i]}
3544	if (( i == ioc ))
3545	then
3546	printf "\n$striche\n"
3547	fi
3548	done
3549
3550
3551	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3552	if [[ $do_trace = true ]]
3553	then
3554	printf "\n\n"
3555	ls -al
3556	fi
3557
3558
3559
3560	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3561	(( i = 0 ))
3562	while (( i < iout ))
3563	do
3564	(( i = i + 1 ))
3565	if (( i == 1 ))
3566	then
3567	printf "\n\n *** saving OUTPUT-files:\n$striche"
3568	fi
3569
3570	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3571	files_for_pes=false; filetyp=file
3572	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3573	then
3574	files_for_pes=true; filetyp=directory
3575	actionout[$i]=""
3576	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3577	then
3578	actionout[$i]=""
3579	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3580	then
3581	files_for_pes=true; filetyp=directory
3582	actionout[$i]="ar"
3583	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3584	then
3585	actionout[$i]="ar"
3586	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3587	then
3588	files_for_pes=true; filetyp=directory
3589	actionout[$i]="fl"
3590	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3591	then
3592	actionout[$i]="fl"
3593	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3594	then
3595	files_for_pes=true; filetyp=directory
3596	actionout[$i]="tr"
3597	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3598	then
3599	actionout[$i]="tr"
3600	fi
3601
3602	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3603	then
3604	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3605	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3606	then
3607	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3608	else
3609
3610
3611	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3612	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3613	# REMOTE-RECHNUNGEN
3614	if [[ "${actionout[$i]}" = tr ]]
3615	then
3616	if [[ $localhost != $fromhost ]]
3617	then
3618	if [[ $files_for_pes = false ]]
3619	then
3620	cps=""
3621	cst=""
3622	else
3623	cps=-c
3624	cst="/"
3625	fi
3626	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3627	then
3628
3629	# TRANSFER IN EIGENSTAENDIGEM JOB
3630	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3631	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3632	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3633	if [[ $files_for_pes = false ]]
3634	then
3635	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3636	else
3637	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3638	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3639	fi
3640
3641	echo "set -x" > transfer_${localout[$i]}
3642	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3643
3644	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3645	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3646	printf "\n or higher cycle\n"
3647	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3648
3649	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3650
3651	if [[ $localhost = nech ]]
3652	then
3653	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3654	else
3655	if [[ "$LOGNAME" = b323013 ]]
3656	then
3657	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3658	else
3659	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3660	fi
3661	fi
3662
3663	else
3664
3665	# TRANSFER INNERHALB DIESES JOBS
3666	transfer_failed=false
3667	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3668	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3669	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3670	[[ $? != 0 ]] && transfer_failed=true
3671
3672	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3673	# LOKALER MASCHINE ANLEGEN
3674	if [[ $transfer_failed = true ]]
3675	then
3676	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3677	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3678
3679	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3680	# ANLEGEN.
3681	eval local_catalog=${pathout[$i]}
3682	if [[ ! -d $local_catalog ]]
3683	then
3684	printf " *** local directory does not exist. Trying to create:\n"
3685	printf " $local_catalog \n"
3686	mkdir -p $local_catalog
3687	fi
3688	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3689	transfer_problems=true
3690	fi
3691	fi
3692	else
3693
3694	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3695	actionout[$i]=""
3696	fi
3697	fi
3698
3699
3700	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3701	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3702	# REMOTE-RECHNUNGEN
3703	if [[ "${actionout[$i]}" = tra ]]
3704	then
3705	if [[ $localhost != $fromhost ]]
3706	then
3707	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3708	then
3709
3710	# TRANSFER IN EIGENSTAENDIGEM JOB
3711	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3712	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3713	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3714	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3715
3716	echo "set -x" > transfer_${localout[$i]}
3717	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3718
3719	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3720	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3721	printf "\n or higher cycle\n"
3722	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3723
3724	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3725
3726	if [[ $localhost = nech ]]
3727	then
3728	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3729	else
3730	if [[ $LOGNAME = b323013 ]]
3731	then
3732	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3733	else
3734	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3735	fi
3736	fi
3737
3738	else
3739
3740	# TRANSFER INNERHALB DIESES JOBS
3741	transfer_failed=false
3742	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3743	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3744	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3745	[[ $? != 0 ]] && transfer_failed=true
3746
3747	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3748	# LOKALER MASCHINE ANLEGEN
3749	if [[ $transfer_failed = true ]]
3750	then
3751	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3752	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3753
3754	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3755	# ANLEGEN
3756	eval local_catalog=${pathout[$i]}
3757	if [[ ! -d $local_catalog ]]
3758	then
3759	printf " *** local directory does not exist. Trying to create:\n"
3760	printf " $local_catalog \n"
3761	mkdir -p $local_catalog
3762	fi
3763
3764	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3765	transfer_problems=true
3766	fi
3767	fi
3768	else
3769
3770	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3771	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3772	actionout[$i]=a
3773	fi
3774	fi
3775
3776
3777	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3778	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3779	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3780	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3781	if [[ "${actionout[$i]}" = fl ]]
3782	then
3783	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3784	chmod g+rx $tmp_data_catalog
3785	if [[ $files_for_pes = false ]]
3786	then
3787	printf "\n >>> OUTPUT: ${localout[$i]} to"
3788	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3789	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3790	else
3791	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3792	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3793	mkdir $tmp_data_catalog/${frelout[$i]}
3794	cd ${localout[$i]}
3795	for file in $(ls *)
3796	do
3797	ln -f $file $tmp_data_catalog/${frelout[$i]}
3798	done
3799	cd $TEMPDIR
3800	fi
3801
3802
3803	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3804	if [[ $store_on_archive_system = true ]]
3805	then
3806
3807	if [[ $archive_system = asterix ]]
3808	then
3809	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3810	if [[ $files_for_pes = false ]]
3811	then
3812	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3813	else
3814	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3815	fi
3816	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3817	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3818	echo "then" >> archive_${frelout[$i]}
3819	echo " do_stageout=false" >> archive_${frelout[$i]}
3820	echo "else" >> archive_${frelout[$i]}
3821	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3822	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3823	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3824	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3825	if [[ $files_for_pes = false ]]
3826	then
3827	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3828	else
3829	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3830	fi
3831	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3832	echo "fi" >> archive_${frelout[$i]}
3833	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3834	elif [[ $archive_system = DMF ]]
3835	then
3836	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3837	if [[ $files_for_pes = false ]]
3838	then
3839	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3840	locat=DMF
3841	exit
3842	else
3843	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3844	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3845	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3846	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3847	fi
3848	elif [[ $archive_system = tivoli ]]
3849	then
3850	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3851	if [[ $files_for_pes = false ]]
3852	then
3853	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3854	echo "set -x" >> archive_${frelout[$i]}
3855	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3856	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3857	else
3858
3859	echo "set -x" >> archive_${frelout[$i]}
3860	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3861	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3862	cd $tmp_data_catalog
3863	all_files=`ls -1 ${frelout[$i]}/*`
3864	cd - > /dev/null
3865	(( inode = 0 ))
3866	(( tp1 = tasks_per_node + 1 ))
3867	while (( inode < nodes ))
3868	do
3869	# echo "*** all_files = \"$all_files\" "
3870	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3871	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3872	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3873	# echo "*** files = \"$files\" "
3874	# echo "*** all_files = \"$all_files\" "
3875	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3876	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3877	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3878	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3879	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3880	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3881	(( inode = inode + 1 ))
3882	done
3883	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3884	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3885	fi
3886	elif [[ $archive_system = ut ]]
3887	then
3888	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3889	if [[ $files_for_pes = false ]]
3890	then
3891	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3892	echo "set -x" >> archive_${frelout[$i]}
3893	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3894	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3895	else
3896
3897	echo "set -x" >> archive_${frelout[$i]}
3898	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3899	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3900	cd $tmp_data_catalog
3901	all_files=`ls -1 ${frelout[$i]}/*`
3902	cd - > /dev/null
3903	(( inode = 0 ))
3904	(( tp1 = tasks_per_node + 1 ))
3905	while (( inode < nodes ))
3906	do
3907	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3908	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3909	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3910	(( inode = inode + 1 ))
3911	done
3912	fi
3913	elif [[ $archive_system = none ]]
3914	then
3915	printf " +++ archiving on $localhost not available!\n"
3916	fi
3917
3918	if [[ $archive_system != none ]]
3919	then
3920	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3921	then
3922	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3923	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3924	elif [[ $localhost = nech ]]
3925	then
3926	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3927	fi
3928	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3929	fi
3930	else
3931	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3932	fi
3933
3934
3935	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3936	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3937	if [[ $files_for_pes = false ]]
3938	then
3939	cat /dev/null > ${pathout[$i]}
3940	else
3941	mkdir -p ${pathout[$i]}
3942	fi
3943
3944	fi
3945
3946
3947	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3948	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3949	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3950	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3951	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3952	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3953	if [[ "${actionout[$i]}" = ar ]]
3954	then
3955	if [[ $files_for_pes = false ]]
3956	then
3957	printf "\n >>> OUTPUT: ${localout[$i]} to"
3958	printf "\n ${pathout[$i]}"
3959	printf "\n File will be copied to archive-system ($archive_system) !\n"
3960	else
3961	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3962	printf "\n ${pathout[$i]}"
3963	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3964	fi
3965	mv ${localout[$i]} ${frelout[$i]}
3966
3967	file_saved=false
3968
3969	if [[ $archive_system = asterix ]]
3970	then
3971	do_stageout=true
3972	(( stageout_anz = 0 ))
3973	while [[ $do_stageout = true ]]
3974	do
3975	if [[ $files_for_pes = false ]]
3976	then
3977	stageout ${frelout[$i]} > STAGE_OUTPUT
3978	else
3979	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3980	fi
3981	cat STAGE_OUTPUT
3982	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3983	then
3984	file_saved=true
3985	do_stageout=false
3986	else
3987	if [[ $files_for_pes = false ]]
3988	then
3989	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3990	else
3991	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3992	fi
3993	(( stageout_anz = stageout_anz + 1 ))
3994	if (( stageout_anz == 10 ))
3995	then
3996	printf "\n +++ stoped after 10 unsuccessful tries!"
3997	archive_save=false
3998	do_stageout=false
3999	else
4000	printf "\n *** new try to store on archive after 15 min:"
4001	sleep 900
4002	fi
4003	fi
4004	done
4005	elif [[ $archive_system = DMF ]]
4006	then
4007	if [[ $files_for_pes = false ]]
4008	then
4009	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4010	locat=DMF
4011	exit
4012	else
4013	rm -rf $ARCHIVE/${frelout[$i]}
4014	cp -r ${frelout[$i]} $ARCHIVE
4015	fi
4016	file_saved=true
4017	elif [[ $archive_system = tivoli ]]
4018	then
4019	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4020	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4021	# GELEGT WERDEN
4022	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4023	chmod g+rx $tmp_data_catalog
4024	if [[ $files_for_pes = false ]]
4025	then
4026	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4027	else
4028	mkdir $tmp_data_catalog/${frelout[$i]}
4029	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4030	fi
4031
4032	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4033	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4034	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4035	if [[ $files_for_pes = false ]]
4036	then
4037	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4038	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4039	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4040	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4041	else
4042	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4043	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4044	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4045	fi
4046
4047	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4048	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4049	file_saved=true
4050
4051	elif [[ $archive_system = ut ]]
4052	then
4053	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4054	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4055	# GELEGT WERDEN
4056	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4057	chmod g+rx $tmp_data_catalog
4058	if [[ $files_for_pes = false ]]
4059	then
4060	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4061	else
4062	mkdir $tmp_data_catalog/${frelout[$i]}
4063	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4064	fi
4065
4066	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4067	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4068	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4069	if [[ $files_for_pes = false ]]
4070	then
4071	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4072	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4073	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4074	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4075	else
4076	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4077	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4078	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4079	fi
4080
4081	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4082	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4083	file_saved=true
4084
4085	else
4086	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4087	archive_save=false
4088	fi
4089	if [[ $file_saved = true ]]
4090	then
4091	if [[ $files_for_pes = false ]]
4092	then
4093	cat /dev/null > ${pathout[$i]}
4094	else
4095	mkdir -p ${pathout[$i]}
4096	fi
4097	fi
4098	fi
4099
4100	# APPEND AUF LOKALER MASCHINE
4101	if [[ "${actionout[$i]}" = "a" ]]
4102	then
4103	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4104	cat ${localout[$i]} >> ${pathout[$i]}
4105	fi
4106
4107	# KOPIEREN AUF LOKALER MASCHINE
4108	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4109	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4110	then
4111
4112	# KOPIEREN AUF EINPROZESSORMASCHINE
4113	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4114	then
4115	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4116	if [[ $link_local_output = true ]]
4117	then
4118	printf " using ln -f\n"
4119	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4120	fi
4121	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4122	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4123	then
4124	if [[ $link_local_output = true ]]
4125	then
4126	printf " ln failed, using cp...\n"
4127	fi
4128	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4129	fi
4130	else
4131	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4132	if [[ $link_local_output = true ]]
4133	then
4134	printf " using ln -f\n"
4135	ln -f ${localout[$i]} ${pathout[$i]}
4136	fi
4137	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4138	if [[ ! -f "${pathout[$i]}" ]]
4139	then
4140	if [[ $link_local_output = true ]]
4141	then
4142	printf " ln failed, using cp...\n"
4143	fi
4144	cp ${localout[$i]} ${pathout[$i]}
4145	fi
4146	fi
4147
4148	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4149	then
4150
4151	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4152	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4153	# WIRD DANN KOPIERT
4154	# PER MOVE UMBENANNT WERDEN
4155	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4156	if [[ $link_local_output = true ]]
4157	then
4158	printf " using ln -f\n"
4159	mkdir ${pathout[$i]}
4160	cd ${localout[$i]}
4161	for file in $(ls *)
4162	do
4163	ln -f $file ${pathout[$i]}
4164	done
4165	cd $TEMPDIR
4166	fi
4167	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4168	if [[ ! -f "${pathout[$i]}/_0000" ]]
4169	then
4170	if [[ $link_local_output = true ]]
4171	then
4172	printf " ln failed for .../_0000, using cp...\n"
4173	fi
4174	cp -r ${localout[$i]} ${pathout[$i]}
4175	fi
4176
4177	fi
4178	fi
4179	done
4180	if (( i != 0 ))
4181	then
4182	if [[ $transfer_problems = true ]]
4183	then
4184	printf "\n$striche\n *** OUTPUT-files saved"
4185	printf "\n +++ WARNING: some data transfers failed! \n"
4186	else
4187	printf "\n$striche\n *** all OUTPUT-files saved \n"
4188	fi
4189	fi
4190
4191
4192	# EVENTUELL FOLGEJOB STARTEN
4193	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4194	if [[ -f CONTINUE_RUN ]]
4195	then
4196
4197	if [[ $archive_save = true ]]
4198	then
4199
4200	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4201	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4202	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4203	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4204	# HANDEN
4205	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4206	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4207	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4208	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4209	then
4210	mc=`echo $mc \| sed 's/#/f/g'`
4211	fi
4212
4213
4214	# JOB STARTEN
4215	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4216	echo " $mc"
4217	printf "\n$striche\n"
4218	if [[ $localhost != $fromhost ]]
4219	then
4220
4221	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4222	then
4223	echo "*** ssh will be used to initiate restart-runs!"
4224	echo " return_addres=\"$return_addres\" "
4225	echo " return_username=\"$return_username\" "
4226	if [[ $return_addres = 172.20.25.41 ]]
4227	then
4228	# WORKAROUND AUF SCIROCCO AM TIT
4229	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4230	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4231	then
4232	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4233	else
4234	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4235	fi
4236	else
4237	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4238	locat=restart; exit
4239	fi
4240
4241	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4242	# DER AKTUELLE JOB ENDET
4243	if [[ $queue = special1q ]]
4244	then
4245	sleep 120
4246	else
4247	sleep 30
4248	fi
4249
4250	else
4251
4252	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4253	# RUFEN WERDEN, AUSSER AUF lcfimm
4254	cd $LOCAL_PWD
4255	if [[ $localhost = lcfimm ]]
4256	then
4257	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4258	else
4259	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4260	fi
4261	cd - > /dev/null
4262	fi
4263	printf "\n$striche\n *** restart-run initiated \n"
4264
4265
4266	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4267	# GEHOLT WORDEN SIND, LOESCHEN
4268	(( i = 0 ))
4269	while (( i < iin ))
4270	do
4271	(( i = i + 1 ))
4272	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4273	then
4274	rm -r $tmp_data_catalog/${frelin[$i]}
4275	fi
4276	done
4277
4278	else
4279
4280	printf "\n +++ no restart-run possible, since errors occured"
4281	printf "\n during the archive process"
4282	fi
4283
4284	fi
4285
4286
4287
4288	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4289	if [[ "$email_notification" != "none" ]]
4290	then
4291
4292	if [[ $localhost != $fromhost ]]
4293	then
4294	if [[ -f CONTINUE_RUN ]]
4295	then
4296	echo "PALM restart run necessary" > email_text
4297	echo "description header of actual run:" >> email_text
4298	cat CONTINUE_RUN >> email_text
4299	echo "mrun-command to restart:" >> email_text
4300	echo "$mc" >> email_text
4301	else
4302	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4303	fi
4304	mail $email_notification < email_text
4305	printf "\n *** email notification sent to \"$email_notification\" "
4306	fi
4307	fi
4308
4309
4310
4311	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4312	cd $HOME
4313	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4314
4315	else
4316
4317
4318	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4319	# CHENDE AKTIONEN DURCHGEFUEHRT
4320
4321	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4322	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4323	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4324	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4325	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4326	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4327	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4328	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4329	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4330	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4331	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4332	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4333	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4334	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4335	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4336	if [[ $use_openmp = true ]]
4337	then
4338	mrun_com=${mrun_com}" -O"
4339	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4340	else
4341	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4342	fi
4343	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4344	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4345	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4346	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4347	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4348	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4349	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4350	if [[ $do_remote = true ]]
4351	then
4352	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4353	fi
4354
4355
4356	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4357	jobfile=jobfile.$RANDOM
4358
4359
4360	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4361	echo "mkdir $TEMPDIR" >> $jobfile
4362	echo "cd $TEMPDIR" >> $jobfile
4363
4364
4365	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4366	if [[ $do_trace = true ]]
4367	then
4368	echo "set -x" >> $jobfile
4369	else
4370	echo "set +vx" >> $jobfile
4371	fi
4372
4373
4374	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4375	# DATEI FUER DEN JOB
4376	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4377	then
4378
4379	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4380	# KOPIEREN
4381	if [[ $restart_run != true ]]
4382	then
4383	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4384	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4385	fi
4386
4387	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4388	echo "set -x" >> $jobfile
4389	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4390	echo "export SOURCES_COMPLETE=true" >> $jobfile
4391
4392	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4393	# ARBEITSVERZEICHNIS VERSCHIEBEN
4394	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4395	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4396	echo "execute_mrun=true" >> $jobfile
4397	echo " " >> $jobfile
4398
4399	else
4400
4401	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4402	# SOWIE GEGEBENENFALLS DES MAKEFILES
4403	if [[ $do_compile = true ]]
4404	then
4405
4406	source_catalog=SOURCES_FOR_RUN_$fname
4407
4408	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4409	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4410	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4411	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4412	echo "export SOURCES_COMPLETE=true" >> $jobfile
4413	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4414
4415	for filename in $source_list
4416	do
4417	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4418	echo "cat > $filename << \"%END%\"" >> $jobfile
4419	cat $source_catalog/$filename >> $jobfile
4420	echo " " >> $jobfile
4421	echo "%END%" >> $jobfile
4422	echo " " >> $jobfile
4423	done
4424
4425	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4426	echo "cat > Makefile << \"%END%\"" >> $jobfile
4427	cat $source_catalog/Makefile >> $jobfile
4428	echo " " >> $jobfile
4429	echo "%END%" >> $jobfile
4430	echo " " >> $jobfile
4431
4432	echo "cd - > /dev/null" >> $jobfile
4433
4434	fi
4435
4436
4437	# ABSPEICHERN DER KONFIGURATIONSDATEI
4438	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4439	echo "cat > $config_file << \"%END%\"" >> $jobfile
4440	cat $config_file >> $jobfile
4441	echo "%END%" >> $jobfile
4442	echo " " >> $jobfile
4443
4444
4445	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4446	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4447	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4448	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4449	echo "%END%" >> $jobfile
4450	if [[ $host = lctit ]]
4451	then
4452	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4453	echo "mv mrun_new $mrun_script_name" >> $jobfile
4454	fi
4455	echo "chmod u+x $mrun_script_name" >> $jobfile
4456	echo "execute_mrun=true" >> $jobfile
4457	echo " " >> $jobfile
4458
4459	fi
4460
4461
4462	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4463	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4464	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4465	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4466	if [[ $do_remote = true ]]
4467	then
4468	(( i = 0 ))
4469	while (( i < iin ))
4470	do
4471	(( i = i + 1 ))
4472	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4473	if [[ "${transin[$i]}" = job ]]
4474	then
4475	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4476	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4477	echo " " >> $jobfile
4478	echo "%END%" >> $jobfile
4479	else
4480	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4481	fi
4482
4483	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4484	echo "if [[ \$? = 1 ]]" >> $jobfile
4485	echo "then" >> $jobfile
4486	echo " echo \" \" " >> $jobfile
4487	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4488	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4489	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4490	echo " execute_mrun=false" >> $jobfile
4491	echo "fi" >> $jobfile
4492	done
4493	fi
4494
4495	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4496	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4497	echo "LOCAL_PWD=$working_directory" >> $jobfile
4498	echo "export LOCAL_PWD" >> $jobfile
4499
4500	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4501	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4502	echo "export LOCAL_MRUN_PATH" >> $jobfile
4503
4504	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4505	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4506	then
4507	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4508	fi
4509
4510	# MRUN AUF ZIELRECHNER AUFRUFEN
4511	echo "set -x" >> $jobfile
4512	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4513
4514	echo 'ls -al; echo `pwd`' >> $jobfile
4515	echo "cd \$HOME" >> $jobfile
4516	echo "rm -rf $TEMPDIR" >> $jobfile
4517
4518
4519
4520
4521	# JOB PER SUBJOB STARTEN
4522	if [[ $silent = false ]]
4523	then
4524	printf "\n "
4525	else
4526	printf "\n\n"
4527	fi
4528
4529	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4530	rm -rf $jobfile
4531
4532
4533	fi # ENDE REMOTE-TEIL
4534
4535
4536
4537	# ENDE DER PROZEDUR

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