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mrun @ 555

Last change on this file since 555 was 555, checked in by raasch, 14 years ago

New:
---

Changed:

Documentation for surface_heatflux in case of prandtl_layer = .F. improved.

bugfix for wrong netcdf/3.6.3 module on lcsgi (mbuild, mrun)

Errors:

Bugfix in if statement (disturb_heatflux)

Bugfix: in 2201 statement: closing " was missing (interpret_config)

Bugfix: default setting of nzb_local for flat topography (init_grid)

Bugfix: wrong dimension used for ts_value_l (user_statistics)

disturb_heatflux, init_grid, interpret_config, user_statistics

Property svn:keywords set to Id Rev

File size: 173.0 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 555 2010-09-07 07:32:53Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212
213
214
215	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
216
217	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
218	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
219	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
220
221	AddFilenames=""
222	additional_conditions=""
223	add_source_path=""
224	afname=""
225	archive_save=true
226	archive_system=none
227	compiler_name=""
228	cond1=""
229	cond2=""
230	config_file=.mrun.config
231	coupled_dist=""
232	coupled_mode="mpi1"
233	cpp_opts=""
234	cpp_options=""
235	cpumax=0
236	cpurest=0
237	delete_temporary_catalog=true
238	do_batch=false
239	do_compile=true
240	do_remote=false
241	do_stagein=true
242	do_stageout=true
243	do_trace=false
244	email_notification="none"
245	exclude=""
246	executable=""
247	execution_error=false
248	fimm=false
249	fname=test
250	fromhost=""
251	global_revision=""
252	group_number=none
253	host=""
254	host_file=""
255	hp=""
256	ignore_archive_error=false
257	input_list=""
258	interpreted_config_file=""
259	job_catalog="~/job_queue"
260	job_on_file=""
261	keep_data_from_previous_run=false
262	link_local_input=false
263	link_local_output=false
264	localhost_realname=$(hostname)
265	local_compile=false
266	local_dvrserver_running=.FALSE.
267	locat=normal
268	mainprog=""
269	makefile=""
270	mc=$0
271	while [[ $(echo $mc \| grep -c "/") != 0 ]]
272	do
273	mc=`echo $mc \| cut -f2- -d"/"`
274	done
275	module_calls=""
276	mrun_script_name=$mc
277	netcdf_inc=""
278	netcdf_lib=""
279	netcdf_support=false
280	node_usage=default
281	numprocs=""
282	numprocs_atmos=0
283	numprocs_ocean=0
284	OOPT=""
285	openmp=false
286	output_list=""
287	package_list=""
288	punkte="..........................................................."
289	queue=none
290	read_from_config=""
291	restart_run=false
292	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
293	if [[ $return_addres = 130.75.105.158 ]]
294	then
295	return_addres=172.20.25.41
296	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
297	fi
298	return_password=""
299	return_username=$LOGNAME
300	remotecall=false
301	remote_username=""
302	run_coupled_model=false
303	run_mode=""
304	scirocco=false
305	store_on_archive_system=false
306	striche=" ----------------------------------------------------------------------------"
307	silent=false
308	source_list=""
309	source_path=SOURCE
310	tasks_per_node=""
311	threads_per_task=1
312	tmpcreate=false
313	tmp_data_catalog=""
314	transfer_problems=false
315	usern=$LOGNAME
316	use_openmp=false
317	working_directory=`pwd`
318	TOPT=""
319	XOPT=""
320	zeit=$( date \| cut -c 12-19 )
321
322	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
323	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
324
325	typeset -R30 calltime
326	typeset -L20 spalte1
327	typeset -L40 spalte2
328	typeset -L60 spalte3
329	typeset -L35 string1=`date`
330	typeset -L12 string2=$usern
331	typeset -L12 string3=$localhost_realname
332	typeset -L12 string4
333	typeset -L12 string5
334	typeset -L30 version="MRUN 2.0 Rev$Rev: 555 $"
335
336
337
338	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
339	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
340
341	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
342	# EXPORTIERT WERDEN
343	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
344	export group_number input_list memory numprocs output_list queue run_mode
345
346
347
348	# FEHLERBEHANDLUNG
349	# BEI EXIT:
350	trap 'rm -rf $working_directory/tmp_mrun
351	if [[ $locat != localhost ]]
352	then
353	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
354	# then
355	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
356	#MRUN-calls on $localhost
357	#
358	#date and time user localhost remotehost termination mrun-command
359	#--------------------------------------------------------------------------------------------------------------------
360	#%STATEND%
361	# chmod 666 ${mrun_path}/statistik/mrun_statistik
362	# fi
363	#
364	# # EINTRAG IN DIE STATISTIK-DATEI
365	# string4=$host
366	# string5=$locat
367	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
368	# then
369	# if [[ $do_batch = true ]]
370	# then
371	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
372	# else
373	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
374	# fi
375	# fi
376	echo " " > /dev/null
377	fi
378
379	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
380	then
381
382	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
383	(( i = 0 ))
384	while (( i < iec ))
385	do
386	(( i = i + 1 ))
387	printf "\n *** Execution of ERROR-command:\n"
388	printf " >>> ${err_command[$i]}\n"
389	eval ${err_command[$i]}
390	done
391	if [[ -n $interpreted_config_file ]] then
392	rm -rf $interpreted_config_file
393	fi
394	if [[ -n .mrun_environment ]] then
395	rm -rf .mrun_environment
396	fi
397	if [[ $tmpcreate = true ]]
398	then
399	printf "\n *** Contents of \"$TEMPDIR\":\n"
400	ls -al; cd
401	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
402	fi
403	if [[ "$dvrserver_id" != "" ]]
404	then
405	echo "+++ killing dvrserver_id=$dvrserver_id"
406	kill $dvrserver_id
407	fi
408	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
409	then
410	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
411	fi
412	printf "\n\n+++ MRUN killed \n\n"
413	elif [[ $locat != control_c ]]
414	then
415	printf "\n\n --> all actions finished\n\n"
416	printf " Bye, bye $usern !!\n\n"
417	fi' exit
418
419
420	# BEI TERMINAL-BREAK:
421	trap 'rm -rf $working_directory/tmp_mrun
422	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
423	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
424	then
425	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
426	fi
427	if [[ "$dvrserver_id" != "" ]]
428	then
429	echo "+++ killing dvrserver_id=$dvrserver_id"
430	kill $dvrserver_id
431	fi
432	printf "\n+++ MRUN killed by \"^C\" \n\n"
433	locat=control_c
434	exit
435	' 2
436
437
438	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
439	# BEEN SET
440	if [[ "$PALM_BIN" = "" ]]
441	then
442	printf "\n +++ environment variable PALM_BIN has not been set"
443	printf "\n please set it to the directory where the PALM scripts are located"
444	locat=palm_bin; exit
445	fi
446	export PATH=$PALM_BIN:$PATH
447
448
449
450	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
451	# FUER FOLGEJOBS BENOETIGT WIRD
452	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
453	do
454	case $option in
455	(a) afname=$OPTARG;;
456	(A) store_on_archive_system=true; mc="$mc -A";;
457	(b) do_batch=true; mc="$mc -b";;
458	(B) delete_temporary_catalog=false; mc="$mc -B";;
459	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
460	(C) restart_run=true; mc="$mc -C";;
461	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
462	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
463	(F) job_on_file="-D"; mc="$mc -F";;
464	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
465	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
466	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
467	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
468	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
469	(I) ignore_archive_error=true; mc="$mc -I";;
470	(k) keep_data_from_previous_run=true; mc="$mc -k";;
471	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
472	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
473	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
474	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
475	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
476	(O) use_openmp=true; mc="$mc -O";;
477	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
478	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
479	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
480	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
481	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
482	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
483	(S) read_from_config=false; mc="$mc -S";;
484	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
485	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
486	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
487	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
488	(v) silent=true; mc="$mc -v";;
489	(x) do_trace=true;set -x; mc="$mc -x";;
490	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
491	(y) ocean_file_appendix=true; mc="$mc -y";;
492	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
493	(\?) printf "\n +++ unknown option $OPTARG \n"
494	printf "\n --> type \"$0 ?\" for available options \n"
495	locat=parameter;exit;;
496	esac
497	done
498
499
500	# EVTL. POSITIONSPARAMETER EINLESEN
501	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
502	shift OPTIND-1
503
504
505	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
506	if [[ "$1" = "?" ]]
507	then
508	(printf "\n *** mrun can be called as follows:\n"
509	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
510	printf "\n Description of available options:\n"
511	printf "\n Option Description Default-Value"
512	printf "\n -a base name of input files equiv. -d"
513	printf "\n -A archiving when using file-attribute fl"
514	printf "\n -b batch-job on local machine ---"
515	printf "\n -B do not delete temporary directory at end ---"
516	printf "\n -c configuration file .mrun.config"
517	printf "\n -d base name of files attached to program test"
518	printf "\n -D preprocessor(cpp)-directives \"\" "
519	printf "\n -F create remote job file only ---"
520	printf "\n -h execution host $localhost_realname"
521	printf "\n -i INPUT control list \"\" "
522	printf "\n -I archiving errors of previous batch-jobs"
523	printf "\n will be ignored"
524	printf "\n -k keep data from previous run"
525	printf "\n -K additional conditions for controling"
526	printf "\n usage of conditional code and"
527	printf "\n env-variables in configuration file \"\" "
528	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
529	printf "\n -M Makefile name Makefile"
530	printf "\n -n node usage (shared/not_shared) depending on -h"
531	printf "\n -o OUTPUT control list \"\" "
532	printf "\n -O use OpenMP ---"
533	printf "\n -p software package list \"\" "
534	printf "\n -q queue \"$queue\" "
535	printf "\n -r run control list (combines -i -o) \"\" "
536	printf "\n -s filenames of routines to be compiled \"\" "
537	printf "\n must end with .f, .f90, .F, or .c !"
538	printf "\n use \"..\" for more than one file and wildcards"
539	printf "\n -s TEST compiles all files with w-permit"
540	printf "\n -S config file interpreted by shellscript ---"
541	printf "\n -t allowed cpu-time in seconds (batch) 0"
542	printf "\n -T tasks per node depending on -h"
543	printf "\n -u username on remote machine \"\" "
544	printf "\n -v no prompt for confirmation ---"
545	printf "\n -x tracing of mrun for debug purposes ---"
546	printf "\n -X # of processors (on parallel machines) 1"
547	printf "\n -y add appendix \"_O\" to all local output"
548	printf "\n files (ocean precursor runs followed by"
549	printf "\n coupled atmosphere-ocean runs) ---"
550	printf "\n -Y run coupled model, \"#1 #2\" with"
551	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
552	printf "\n "
553	printf "\n Possible values of positional parameter <modus>:"
554	printf "\n \"?\" - this outline \n\n") \| more
555	exit
556	elif [[ "$1" != "" ]]
557	then
558	printf "\n +++ positional parameter $1 unknown \n"
559	locat=parameter; exit
560	fi
561
562
563
564	# KURZE STARTMELDUNG
565	printf "\n*** $version "
566	printf "\n will be executed. Please wait ..."
567
568
569
570	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
571	if [[ ! -f $config_file ]]
572	then
573	printf "\n\n +++ configuration file: "
574	printf "\n $config_file"
575	printf "\n does not exist"
576	locat=connect; exit
577	fi
578
579
580	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
581	line=""
582	grep "%host_identifier" $config_file > tmp_mrun
583	while read line
584	do
585	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
586	then
587	HOSTNAME=`echo $line \| cut -d" " -s -f2`
588	host_identifier=`echo $line \| cut -d" " -s -f3`
589	if [[ $localhost_realname = $HOSTNAME ]]
590	then
591	localhost=$host_identifier
592	break
593	fi
594	fi
595	done < tmp_mrun
596
597	if [[ "$localhost" = "" ]]
598	then
599	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
600	printf "\n for local host \"$localhost_realname\"."
601	printf "\n Please add line"
602	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
603	printf "\n to the configuration file."
604	locat=localhost; exit
605	fi
606
607
608	# HOSTSPEZIFISCHE VARIABLEN SETZEN
609	case $localhost_realname in
610	(r1\|r2\|h01\|b01) archive_system=tivoli;;
611	(cs*) archive_system=ut;;
612	(fimm.bccs.uib.no) fimm=true;;
613	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
614	(scirocco) scirocco=true;;
615	esac
616
617
618
619	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
620	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
621	[[ "$afname" = "" ]] && afname=$fname
622
623
624	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
625	if [[ "$run_mode" != "" ]]
626	then
627	input_list="$input_list $run_mode"
628	output_list="$output_list $run_mode"
629	fi
630
631
632	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
633	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
634	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
635	# STARTET)
636	if [[ "$fromhost" = "" ]]
637	then
638	fromhost=$localhost
639	fi
640
641
642	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
643	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
644	then
645	source_list=TEST
646	local_compile=true
647	host=$localhost
648	fi
649
650
651	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
652	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
653	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
654	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
655	if [[ -n $host && "$host" != $localhost ]]
656	then
657	do_batch=true
658	do_remote=true
659	case $host in
660	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
661	(*) printf "\n"
662	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
663	printf "\n is not available"
664	locat=nqs; (( iec = 0 )); exit;;
665	esac
666	else
667	host=$localhost
668	fi
669
670
671	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
672	if [[ -n $additional_conditions ]]
673	then
674	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
675	cond1=`echo $additional_conditions \| cut -d" " -f1`
676	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
677	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
678	if [[ -n $dummy ]]
679	then
680	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
681	locat=options; exit
682	fi
683	block=_$cond1
684	[[ -n $cond2 ]] && block=${block}_$cond2
685	fi
686
687
688	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
689	if [[ $run_coupled_model = true ]]
690	then
691
692	if [[ -n $coupled_dist ]]
693	then
694
695	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
696	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
697
698	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
699	then
700
701	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
702	printf "\n PEs (total) : $numprocs"
703	printf "\n PEs (atmosphere): $numprocs_atmos"
704	printf "\n PEs (ocean) : $numprocs_ocean"
705	locat=coupling; exit
706
707	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
708	# THIS SHOULD BE REMOVED IN FUTURE
709	elif (( $numprocs_ocean != $numprocs_atmos ))
710	then
711
712	printf "\n +++ currently only 1:1 topologies are supported"
713	printf "\n PEs (total) : $numprocs"
714	printf "\n PEs (atmosphere): $numprocs_atmos"
715	printf "\n PEs (ocean) : $numprocs_ocean"
716	(( numprocs_atmos = $numprocs / 2 ))
717	(( numprocs_ocean = $numprocs / 2 ))
718	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
719
720	fi
721
722	else
723
724	(( numprocs_ocean = $numprocs / 2 ))
725	(( numprocs_atmos = $numprocs / 2 ))
726
727	fi
728	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
729
730	# GET coupled_mode FROM THE CONFIG FILE
731	line=""
732	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
733	while read line
734	do
735	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
736	then
737	coupled_mode="mpi2"
738	fi
739	done < tmp_mrun
740
741	fi
742
743
744	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
745	# ARCHIVIERUNG FEHLGESCHLAGEN IST
746	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
747	then
748	if [[ $ignore_archive_error = false ]]
749	then
750	printf "\n +++ data archiving of previous run failed"
751	printf "\n see directory \~/job_queue on remote machine"
752	locat=archive; exit
753	else
754	printf "\n +++ warning: data archiving in a previous run failed"
755	printf "\n MRUN continues, trying to get backup copy"
756	fi
757	fi
758
759
760
761	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
762	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
763	if [[ "$read_from_config" = false ]]
764	then
765
766	[[ $silent = false ]] && printf "\n Reading the configuration file... "
767	while read zeile
768	do
769	[[ $silent = false ]] && printf "."
770
771
772	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
773	# ERSETZEN
774	eval zeile=\"$zeile\"
775
776
777	# INTERPRETATION DER ZEILE
778	if [[ "$(echo $zeile)" = "" ]]
779	then
780	# LEERZEILE, KEINE AKTION
781	continue
782
783	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
784	then
785
786	# ZEILE IST KOMMENTARZEILE
787	true
788
789	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
790	then
791
792	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
793	zeile=$(echo $zeile \| cut -c2-)
794	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
795	var=`echo $zeile \| cut -d" " -f1`
796	value=`echo $zeile \| cut -d" " -s -f2`
797	for_host=`echo $zeile \| cut -d" " -s -f3`
798	for_cond1=`echo $zeile \| cut -d" " -s -f4`
799	for_cond2=`echo $zeile \| cut -d" " -s -f5`
800
801	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
802	then
803
804	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
805	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
806	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
807
808
809	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
810	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
811	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
812	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
813	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
814	# KONFIGURATIONSDATEI
815	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
816	then
817	eval $var=\$value
818
819	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
820	if [[ $do_trace = true ]]
821	then
822	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
823	fi
824	fi
825
826	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
827	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
828	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
829	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
830	if [[ $var = host ]]
831	then
832	if [[ -n $host && "$host" != $localhost ]]
833	then
834	do_batch=true
835	do_remote=true
836	case $host in
837	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
838	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
839	printf "\n is not available"
840	locat=nqs; exit;;
841	esac
842	else
843	host=$localhost
844	fi
845	fi
846
847	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
848	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
849	# DEN PROGRAMMEN BENOETIGT WERDEN
850	export $var
851	fi
852
853
854
855
856	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
857	then
858
859	# ZEILE DEFINIERT ERROR-KOMMANDO
860	(( iec = iec + 1 ))
861	zeile=$(echo $zeile \| cut -c4-)
862	err_command[$iec]="$zeile"
863
864	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
865	then
866
867	# ZEILE DEFINIERT INPUT-KOMMANDO
868	(( iic = iic + 1 ))
869	zeile=$(echo $zeile \| cut -c4-)
870	in_command[$iic]="$zeile"
871
872	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
873	then
874
875	# ZEILE DEFINIERT OUTPUT-KOMMANDO
876	(( ioc = ioc + 1 ))
877	zeile=$(echo $zeile \| cut -c4-)
878	out_command[$ioc]="$zeile"
879
880	else
881
882	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
883	# s2a: in/out - Feld
884	# s2b: loc - Feld (optional)
885	# s2c: tr/ar - Feld (optional)
886	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
887	s1=`echo $zeile \| cut -d" " -f1`
888	s2=`echo $zeile \| cut -d" " -s -f2`
889	s2a=$(echo $s2 \| cut -d":" -f1)
890	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
891	then
892	s2b=""
893	s2c=""
894	else
895	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
896	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
897	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
898	fi
899	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
900	s3=`echo $zeile \| cut -d" " -f3`
901	s4=`echo $zeile \| cut -d" " -s -f4`
902	s5=`echo $zeile \| cut -d" " -s -f5`
903	s6=`echo $zeile \| cut -d" " -s -f6`
904
905
906	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
907	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
908	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
909	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
910	# HANDEN SEIN MUSS (D.H. s2b = loc)
911	IFSALT="$IFS"; IFS="$IFS:"
912	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
913	then
914	found=false
915	for actual in $input_list
916	do
917	for formal in $s3
918	do
919	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
920	done
921	done
922	if [[ $found = true ]]
923	then
924	(( iin = iin + 1 ))
925	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
926	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
927	extin[$iin]=$s6
928	fi
929	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
930	then
931	found=false
932	for actual in $output_list
933	do
934	for formal in $s3
935	do
936	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
937	done
938	done
939	if [[ $found = true ]]
940	then
941	(( iout = iout + 1 ))
942	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
943	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
944	fi
945	elif [[ "$s2a" != in && "$s2a" != out ]]
946	then
947	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
948	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
949	locat=connect; exit
950	fi
951	IFS="$IFSALT"
952	fi
953	done < $config_file
954
955	else
956
957
958	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
959	[[ $silent = false ]] && printf "..."
960	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
961	export interpreted_config_file=.icf.$RANDOM
962
963
964
965	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
966	# VERFUEGUNG STELLEN
967	cat > .mrun_environment << %%END%%
968	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
969	config_file = '$config_file', do_remote = '$do_remote',
970	do_trace = '$do_trace', host = '$host',
971	input_list = '$input_list', icf = '$interpreted_config_file',
972	localhost = '$localhost', output_list = '$output_list' /
973
974	%%END%%
975
976	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
977	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
978	mrun_memory=$memory
979	mrun_group_number=$group_number
980	mrun_cpumax=$cpumax
981	mrun_numprocs=$numprocs
982
983	if [[ $localhost_realname = "sx-fep" ]]
984	then
985	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
986	else
987
988	if [[ "$host" != $localhost ]]
989	then
990
991	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
992	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
993	if [[ $? != 0 ]]
994	then
995	printf "\n\n +++ no interpret_config found"
996	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
997	locat=interpret_config; exit
998	fi
999	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1000	$interpret_config_executable
1001
1002	else
1003
1004	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1005	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1006	then
1007	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1008	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1009	locat=interpret_config; exit
1010	else
1011	interpret_config${block}.x
1012	fi
1013
1014	fi
1015	fi
1016	rm .mrun_environment
1017
1018
1019	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1020	chmod u+x $interpreted_config_file
1021	export PATH=$PATH:.
1022	. $interpreted_config_file
1023	rm $interpreted_config_file
1024
1025
1026	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1027	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1028	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1029	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1030	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1031
1032	fi
1033
1034
1035	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1036	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1037	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1038	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1039	if [[ "$SOURCES_COMPLETE" = "" ]]
1040	then
1041
1042	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1043	# VEREINBART WURDE
1044	source_path=""
1045	line=""
1046	grep "%source_path" $config_file > tmp_mrun
1047	while read line
1048	do
1049	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1050	then
1051	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1052	then
1053	global_source_path=`echo $line \| cut -d" " -f2`
1054	fi
1055	fi
1056	done < tmp_mrun
1057
1058	line=""
1059	found=false
1060	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1061	while read line
1062	do
1063	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1064	then
1065	if [[ $found = true ]]
1066	then
1067	printf "\n\n +++ more than one source path found in configuration file"
1068	printf "\n for local host \"$localhost\" "
1069	locat=source_path; exit
1070	fi
1071	source_path=`echo $line \| cut -d" " -f2`
1072	found=true
1073	fi
1074	done < tmp_mrun
1075	rm tmp_mrun
1076
1077	if [[ "$source_path" = "" ]]
1078	then
1079	if [[ "$global_source_path" != "" ]]
1080	then
1081	source_path=$global_source_path
1082	else
1083	printf "\n\n +++ no source path found in configuration file"
1084	printf "\n for local host \"$localhost\" "
1085	locat=source_path; exit
1086	fi
1087	fi
1088	eval source_path=$source_path
1089
1090	if [[ ! -d $source_path ]]
1091	then
1092	printf "\n\n +++ source path \"$source_path\" on local host"
1093	printf "\n \"$localhost\" does not exist"
1094	locat=source_path; exit
1095	fi
1096
1097	fi
1098
1099
1100	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1101	# DURCH OPTION -G MITGETEILT)
1102	if [[ "$global_revision" = "" ]]
1103	then
1104	global_revision=`svnversion $source_path 2>/dev/null`
1105	global_revision="Rev: $global_revision"
1106	fi
1107
1108
1109	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1110	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1111	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1112	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1113	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1114	if [[ -n $host && "$host" != $localhost ]]
1115	then
1116	do_batch=true
1117	do_remote=true
1118	case $host in
1119	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1120	(*) printf "\n"
1121	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1122	printf "\n is not available"
1123	locat=nqs; (( iec = 0 )); exit;;
1124	esac
1125	else
1126	host=$localhost
1127	fi
1128
1129
1130	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1131	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1132	then
1133
1134	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1135	if [[ ! -n $numprocs ]]
1136	then
1137	printf "\n"
1138	printf "\n +++ option \"-K parallel\" requires additional specification"
1139	printf "\n of the number of processors to be used by"
1140	printf "\n mrun-option \"-X\" or by environment-variable"
1141	printf "\n \"numprocs\" in the configuration file"
1142	locat=numprocs; (( iec = 0 )); exit
1143	fi
1144
1145	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1146	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1147	# GESAMTPROZESSORANZAHL IST
1148	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1149	then
1150	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1151	(( ival = $tasks_per_node ))
1152	(( pes = numprocs ))
1153	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1154	# then
1155	# (( pes = pes - 1 ))
1156	# fi
1157	(( ii = pes / ival ))
1158	if (( pes - ii * ival > 0 ))
1159	then
1160	printf "\n"
1161	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1162	printf "\n divisor of the total number of processors (option \"-X\")"
1163	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1164	locat=tasks_per_node; (( iec = 0 )); exit
1165	fi
1166	fi
1167
1168	# IBMY HAT NUR EINEN KNOTEN
1169	if [[ $host = ibmy ]]
1170	then
1171	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1172	then
1173	printf "\n"
1174	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1175	printf "\n total number of processors (option \"-X\")"
1176	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1177	locat=tasks_per_node; (( iec = 0 )); exit
1178	fi
1179	fi
1180
1181	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1182	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1183	if [[ $use_openmp = true ]]
1184	then
1185	threads_per_task=$tasks_per_node
1186	tasks_per_node=1
1187	fi
1188
1189	# SETTINGS FOR SUBJOB-COMMAND
1190	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1191	then
1192	(( tp1 = tasks_per_node * threads_per_task ))
1193	TOPT="-T $tp1"
1194	else
1195	TOPT="-T $tasks_per_node"
1196	fi
1197	OOPT="-O $threads_per_task"
1198
1199	# GESAMTZAHL DER KNOTEN BESTIMMEN
1200	if [[ "$tasks_per_node" != "" ]]
1201	then
1202	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1203	fi
1204
1205	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1206	# SETZEN
1207	if [[ $node_usage = default ]]
1208	then
1209	if [[ $host = ibms ]]
1210	then
1211	node_usage=shared
1212	elif [[ $host = lctit ]]
1213	then
1214	node_usage=RAM64GB
1215	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1216	then
1217	node_usage=singlejob
1218	else
1219	node_usage=not_shared
1220	fi
1221	fi
1222
1223	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1224	then
1225	printf "\n"
1226	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1227	printf "\n \"shared\" or \"not_shared\""
1228	locat=tasks_per_node; (( iec = 0 )); exit
1229	fi
1230
1231	fi
1232
1233	# PRUEFEN, OB HOSTFILE EXISTIERT
1234	if [[ -n $hostfile ]]
1235	then
1236	if [[ ! -f $hostfile ]]
1237	then
1238	printf "\n"
1239	printf "\n +++ hostfile \"$hostfile\" does not exist"
1240	locat=hostfile; exit
1241	fi
1242	fi
1243
1244	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1245	if [[ $host = ibmy && $do_remote = false ]]
1246	then
1247	if [[ ! -f $HOME/.rhosts ]]
1248	then
1249	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1250	printf "\n\n *** file:"
1251	printf "\n $HOME/.rhosts"
1252	printf "\n was created\n"
1253	fi
1254	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1255	then
1256	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1257	printf "\n\n *** file:"
1258	printf "\n $HOME/.rhosts"
1259	printf "\n was extended by the name of the current host\n"
1260	fi
1261	fi
1262
1263
1264
1265	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1266	if [[ $queue = none ]]
1267	then
1268	case $host in
1269	(ibmb) if [[ $node_usage = shared ]]
1270	then
1271	queue=cshare
1272	else
1273	queue=csolo
1274	fi;;
1275	(ibmh) queue=no_class;;
1276	(ibmy) queue=parallel;;
1277	(lckyoto) queue=ph;;
1278	(lcsgib) queue=bigq;;
1279	(lcsgih) queue=bigq;;
1280	(lctit) queue=RAM64GB;;
1281	(nech) queue=none;;
1282	(necriam) queue=SP;;
1283	(unics) queue=unics;;
1284	esac
1285	fi
1286
1287
1288	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1289	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1290	# ERMITTELN
1291	(( i = 0 ))
1292	while (( i < iin ))
1293	do
1294	(( i = i + 1 ))
1295	(( maxcycle = 0 ))
1296
1297	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1298	if [[ "${actionin[$i]}" = di ]]
1299	then
1300	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1301	# REM-MASCHINE AUSWERTEN
1302	eval filename=${pathin[$i]}/${endin[$i]}
1303	else
1304	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1305	# REM-MASCHINE AUSWERTEN
1306	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1307	fi
1308
1309	# PRUEFEN AUF VORHANDENSEIN
1310	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1311	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1312	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1313	then
1314	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1315	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1316	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1317	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1318	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1319	if [[ "${transin[$i]}" != "locopt" ]]
1320	then
1321	printf "\n\n +++ INPUT-file: "
1322	if [[ "${extin[$i]}" = "" ]]
1323	then
1324	printf "\n $filename"
1325	else
1326	printf "\n $filename.${extin[$i]}"
1327	fi
1328	printf "\n does not exist\n"
1329	locat=input; exit
1330	else
1331	transin[$i]="unavailable"
1332	fi
1333	else
1334
1335	# ZYKLUSNUMMER FESTSTELLEN
1336	ls -1 -d $filename > filelist 2>/dev/null
1337	ls -1 -d $filename.* >> filelist 2>/dev/null
1338	while read zeile
1339	do
1340	cycle=$(print $zeile \| cut -f2 -d".")
1341	if [[ "$cycle" = "$zeile" ]]
1342	then
1343	(( icycle = 0 ))
1344	elif [[ "$cycle" = "${extin[$i]}" ]]
1345	then
1346	(( icycle = 0 ))
1347	else
1348	(( icycle = $cycle ))
1349	fi
1350	if (( icycle > maxcycle ))
1351	then
1352	(( maxcycle = icycle ))
1353	file_to_be_used=$zeile
1354	fi
1355	done <filelist
1356	rm filelist
1357
1358	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1359	if (( maxcycle > 0 ))
1360	then
1361	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1362	then
1363	filename=${filename}.$maxcycle.${extin[$i]}
1364	else
1365	filename=${filename}.$maxcycle
1366	fi
1367	else
1368	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1369	then
1370	filename=${filename}.${extin[$i]}
1371	fi
1372	fi
1373
1374	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1375	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1376	absnamein[$i]=$filename
1377	if (( maxcycle > 0 ))
1378	then
1379	if [[ "${actionin[$i]}" = di ]]
1380	then
1381	frelin[$i]=${endin[$i]}.$maxcycle
1382	else
1383	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1384	fi
1385	else
1386	if [[ "${actionin[$i]}" = di ]]
1387	then
1388	frelin[$i]=${endin[$i]}
1389	else
1390	frelin[$i]=${afname}${endin[$i]}
1391	fi
1392	fi
1393
1394	fi
1395	done
1396
1397
1398	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1399	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1400	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1401	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1402	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1403	(( i = 0 ))
1404	while (( i < iout ))
1405	do
1406	(( i = i + 1 ))
1407	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1408	then
1409	if [[ "${actionout[$i]}" = tr ]]
1410	then
1411	actionout[$i]=""
1412	elif [[ "${actionout[$i]}" = trpe ]]
1413	then
1414	actionout[$i]=pe
1415	elif [[ "${actionout[$i]}" = tra ]]
1416	then
1417	actionout[$i]=a
1418	fi
1419	(( maxcycle = 0 ))
1420	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1421	eval catalogname=${pathout[$i]}
1422	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1423	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1424	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1425	then
1426
1427	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1428	if cat /dev/null > $filename
1429	then
1430	rm $filename
1431	else
1432
1433	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1434	if [[ ! -d $catalogname ]]
1435	then
1436	if mkdir -p $catalogname
1437	then
1438	printf "\n\n *** directory:"
1439	printf "\n $catalogname"
1440	printf "\n was created\n"
1441	else
1442	printf "\n\n +++ OUTPUT-file:"
1443	printf "\n $filename"
1444	printf "\n cannot be created, because directory does not exist"
1445	printf "\n and cannot be created either"
1446	printf "\n"
1447	locat=output ; exit
1448	fi 2>/dev/null
1449	else
1450	printf "\n\n +++ OUTPUT-file:"
1451	printf "\n $filename"
1452	printf "\n cannot be created, although directory exists"
1453	printf "\n"
1454	locat=output ; exit
1455	fi
1456	fi 2>/dev/null
1457	else
1458
1459	# ZYKLUSNUMMER FESTSTELLEN
1460	ls -1 -d $filename > filelist 2>/dev/null
1461	ls -1 -d $filename.* >> filelist 2>/dev/null
1462	while read zeile
1463	do
1464	cycle=$(print $zeile \| cut -f2 -d".")
1465	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1466	then
1467	(( icycle = 1 ))
1468	else
1469	(( icycle = $cycle + 1 ))
1470	fi
1471	if (( icycle > maxcycle ))
1472	then
1473	(( maxcycle = icycle ))
1474	fi
1475	done <filelist
1476	rm filelist
1477	fi
1478
1479	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1480	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1481	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1482	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1483	if [[ "${actionout[$i]}" != a ]]
1484	then
1485	if (( maxcycle > 0 ))
1486	then
1487	filename=${filename}.$maxcycle
1488	if cat /dev/null > $filename
1489	then
1490	rm $filename
1491	else
1492	printf "\n +++ OUTPUT-file:"
1493	printf "\n $filename"
1494	printf "\n cannot be created"
1495	locat=output ; exit
1496	fi
1497	fi
1498	else
1499	(( maxcycle = maxcycle - 1 ))
1500	if (( maxcycle > 0 ))
1501	then
1502	filename=${filename}.$maxcycle
1503	fi
1504	fi
1505
1506	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1507	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1508	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1509	pathout[$i]=$filename
1510	if (( maxcycle > 0 ))
1511	then
1512	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1513	else
1514	frelout[$i]=${fname}${endout[$i]}
1515	fi
1516
1517	fi
1518	done
1519
1520
1521	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1522	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1523	then
1524	if [[ "$dvr_inc" = "" ]]
1525	then
1526	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1527	printf "\n This is required for the dvrp_graphics package.\n"
1528	locat=dvr; exit
1529	fi
1530	if [[ "$dvr_lib" = "" ]]
1531	then
1532	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1533	printf "\n This is required for the dvrp_graphics package.\n"
1534	locat=dvr; exit
1535	fi
1536	fi
1537
1538
1539	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1540	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1541	# UEBERSETZT ZU WERDEN)
1542	if [[ "$mainprog" = "" && "$executable" = "" ]]
1543	then
1544	printf "\n +++ neither main program nor executable defined"
1545	locat=source; exit
1546	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1547	then
1548	printf "\n +++ main program as well as executable defined"
1549	locat=source; exit
1550	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1551	then
1552	do_compile=false
1553	fi
1554
1555
1556	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1557	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1558	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1559	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1560	then
1561	rm -rf SOURCES_FOR_RUN_$fname
1562	mkdir SOURCES_FOR_RUN_$fname
1563	fi
1564
1565
1566	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1567	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1568	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1569	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1570	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1571	then
1572
1573	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1574	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1575
1576
1577	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1578	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1579	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1580	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1581	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1582	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1583	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1584	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1585	# GESAMMELT
1586	if [[ "$source_list" = WRITE_PERMIT ]]
1587	then
1588
1589	source_list=""
1590	cd $source_path
1591
1592
1593	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1594	Names=$(ls -1 *.f90 2>&1)
1595	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1596	Names=$(ls -1 *.F90 2>&1)
1597	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1598	Names=$(ls -1 *.F 2>&1)
1599	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1600	Names=$(ls -1 *.f 2>&1)
1601	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1602	Names=$(ls -1 *.c 2>&1)
1603	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1604
1605
1606	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1607	for dateiname in $Filenames
1608	do
1609	if [[ -w $dateiname ]]
1610	then
1611	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1612	then
1613	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1614	source_list=$source_list"$dateiname "
1615	fi
1616	fi
1617	done
1618
1619	cd - > /dev/null
1620
1621
1622	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1623	then
1624
1625	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1626	source_list=""
1627	cd $source_path
1628
1629
1630	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1631	if [[ ! -d .svn ]]
1632	then
1633	printf "\n\n +++ source directory"
1634	printf "\n \"$source_path\" "
1635	printf "\n is not under control of \"subversion\"."
1636	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1637	fi
1638
1639
1640	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1641	Filenames=""
1642	svn status > tmp_mrun
1643	while read line
1644	do
1645	firstc=`echo $line \| cut -c1`
1646	if [[ $firstc = M \|\| $firstc = "?" ]]
1647	then
1648	Name=`echo "$line" \| cut -c8-`
1649	extension=`echo $Name \| cut -d. -f2`
1650	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1651	then
1652	Filenames="$Filenames "$Name
1653	fi
1654	fi
1655	done < tmp_mrun
1656
1657
1658	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1659	for dateiname in $Filenames
1660	do
1661	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1662	source_list=$source_list"$dateiname "
1663	done
1664
1665	cd - > /dev/null
1666
1667
1668	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1669	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1670	# VORHANDEN
1671	elif [[ "$source_list" != "" && $restart_run != true ]]
1672	then
1673
1674	cd $source_path
1675
1676	for filename in $source_list
1677	do
1678
1679	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1680	if [[ $(print $filename \| grep -c "/") != 0 ]]
1681	then
1682	printf "\n +++ source code file: $filename"
1683	printf "\n must not contain (\"/\") "
1684	locat=source; exit
1685	fi
1686
1687	if [[ ! -f $filename ]]
1688	then
1689	printf "\n +++ source code file: $filename"
1690	printf "\n does not exist"
1691	locat=source; exit
1692	else
1693	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1694	fi
1695
1696	done
1697
1698	cd - > /dev/null
1699
1700	fi
1701
1702
1703	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1704	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1705	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1706	if [[ $restart_run != true ]]
1707	then
1708
1709	if [[ ! -f "$source_path/$mainprog" ]]
1710	then
1711	printf "\n\n +++ main program: $mainprog"
1712	printf "\n does not exist in source directory"
1713	printf "\n \"$source_path\"\n"
1714	locat=source; exit
1715	else
1716	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1717	then
1718	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1719	source_list=${mainprog}" $source_list"
1720	fi
1721	fi
1722	fi
1723
1724
1725	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1726	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1727	if [[ "$restart_run" != true ]]
1728	then
1729	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1730	if [[ ! -f $makefile ]]
1731	then
1732	printf "\n +++ file \"$makefile\" does not exist"
1733	locat=make; exit
1734	else
1735	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1736	fi
1737	fi
1738
1739
1740	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1741	if [[ $restart_run != true && "$add_source_path" != "" ]]
1742	then
1743
1744	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1745	if [[ ! -d $add_source_path ]]
1746	then
1747	printf "\n\n +++ WARNING: additional source code directory"
1748	printf "\n \"$add_source_path\" "
1749	printf "\n does not exist or is not a directory."
1750	printf "\n No source code will be used from this directory!\n"
1751	add_source_path=""
1752	sleep 3
1753	else
1754
1755	cd $add_source_path
1756	found=false
1757
1758	Names=$(ls -1 *.f90 2>&1)
1759	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1760	Names=$(ls -1 *.F90 2>&1)
1761	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1762	Names=$(ls -1 *.F 2>&1)
1763	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1764	Names=$(ls -1 *.f 2>&1)
1765	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1766	Names=$(ls -1 *.c 2>&1)
1767	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1768
1769	cd - > /dev/null
1770	cd SOURCES_FOR_RUN_$fname
1771
1772	# COPY MAKEFILE IF EXISTING
1773	if [[ -f $add_source_path/Makefile ]]
1774	then
1775	printf "\n\n *** user Makefile from directory"
1776	printf "\n \"$add_source_path\" is used \n"
1777	sleep 1
1778	cp $add_source_path/Makefile .
1779	fi
1780
1781	for dateiname in $AddFilenames
1782	do
1783	if [[ -f $dateiname ]]
1784	then
1785	printf "\n +++ source code file \"$dateiname\" found in additional"
1786	printf "\n source code directory \"$add_source_path\" "
1787	printf "\n but was also given with option \"-s\" which means that it should be taken"
1788	printf "\n from directory \"$source_path\"."
1789	locat=source; exit
1790	fi
1791
1792	cp $add_source_path/$dateiname .
1793	source_list="$source_list $dateiname"
1794
1795	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1796	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1797	then
1798	printf "\n\n +++ user file \"$dateiname\" "
1799	printf "\n is not listed in Makefile \n"
1800	locat=source; exit
1801	else
1802
1803	# Default User-Interface von der Liste entfernen, falls Datei
1804	# ein User-Interface enthaelt
1805	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1806	# then
1807	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1808	# then
1809	# rm -rf user_interface.f90
1810	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1811	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1812	# printf "\n since a user-interface is found in file"
1813	# printf "\n \"$add_source_path/$dateiname\" \n"
1814	# sleep 3
1815	# else
1816	if [[ $found = false ]]
1817	then
1818	found=true
1819	printf "\n\n *** following user file(s) added to the"
1820	printf " files to be translated:\n "
1821	fi
1822	printf "$dateiname "
1823	sleep 0.5
1824	fi
1825	done
1826	[[ $found = true ]] && printf "\n"
1827	cd - > /dev/null
1828	fi
1829	fi
1830
1831
1832	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1833	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1834	if [[ $restart_run != true && -n $package_list ]]
1835	then
1836
1837	cd $source_path
1838
1839	for package in $package_list
1840	do
1841
1842	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1843
1844	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1845	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1846	# LIEFERT
1847	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1848
1849
1850	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1851	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1852	for source_list_name in $package_source_list
1853	do
1854	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1855	then
1856
1857	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1858	ending=`echo $source_list_name \| cut -f2 -d.`
1859	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1860	then
1861	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1862	source_list="$source_list $source_list_name"
1863	fi
1864	fi
1865	done
1866	done
1867
1868	cd - > /dev/null
1869	fi
1870
1871
1872	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1873	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1874	# if [[ "$restart_run" != true ]]
1875	# then
1876	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1877	# if [[ ! -f $makefile ]]
1878	# then
1879	# printf "\n +++ file \"$makefile\" does not exist"
1880	# locat=make; exit
1881	# else
1882	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1883	# fi
1884	# fi
1885
1886	fi # do_compile=true
1887
1888
1889	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1890	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1891	if [[ $do_compile = true ]]
1892	then
1893
1894	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1895	# ZUSAMMENSETZEN
1896	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1897	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1898	then
1899	cpp_options="${cpp_options},-D__ibm=__ibm"
1900	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1901	then
1902	cpp_options="$cpp_options -D__nec"
1903	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1904	then
1905	cpp_options="$cpp_options -D__lc"
1906	else
1907	cpp_options="$cpp_options -D__$localhost"
1908	fi
1909
1910	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1911	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1912	then
1913	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1914	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1915	else
1916	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1917	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1918	fi
1919
1920	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1921	if [[ -n $package_list ]]
1922	then
1923	for package in $package_list
1924	do
1925	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1926	then
1927	if [[ $package != "dvrp_graphics+1PE" ]]
1928	then
1929	cpp_options="${cpp_options},-D__$package=__$package"
1930	else
1931	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1932	export use_seperate_pe_for_dvrp_output=true
1933	fi
1934	else
1935	if [[ $package != "dvrp_graphics+1PE" ]]
1936	then
1937	cpp_options="$cpp_options -D__$package"
1938	else
1939	cpp_options="$cpp_options -D__dvrp_graphics"
1940	export use_seperate_pe_for_dvrp_output=true
1941	fi
1942	fi
1943	done
1944	fi
1945
1946	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1947	if [[ -n $cpp_opts ]]
1948	then
1949	for popts in $cpp_opts
1950	do
1951	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1952	then
1953	cpp_options="${cpp_options},-D__$popts=__$popts"
1954	else
1955	cpp_options="$cpp_options -D__$popts"
1956	fi
1957	done
1958	fi
1959
1960	else
1961
1962
1963	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1964	if [[ $do_remote = false ]]
1965	then
1966	if [[ ! -f $executable ]]
1967	then
1968	printf "\n +++ executable file: $executable"
1969	printf "\n does not exist"
1970	locat=executable; exit
1971	fi
1972	fi
1973	fi
1974
1975
1976	# JOBMODUS FESTSTELLEN
1977	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1978	then
1979	jobmo=BATCH
1980	else
1981	jobmo=INTERACTIVE
1982	fi
1983
1984
1985	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1986	# DURCH BENUTZER ANDERWEITIG VEREINBART
1987	if [[ "$compiler_name" = "" ]]
1988	then
1989
1990	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1991	locat=compiler_name; exit
1992
1993	fi
1994
1995
1996	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1997	[[ $localhost = necriam ]] && compiler_name=mpif90
1998
1999
2000
2001	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2002	kennung=$RANDOM
2003	if [[ "$tmp_user_catalog" = "" ]]
2004	then
2005	if [[ $localhost = ibmh ]]
2006	then
2007	tmp_user_catalog=$SCRATCH
2008	elif [[ $localhost = nech ]]
2009	then
2010	tmp_user_catalog=$WRKSHR
2011	else
2012	tmp_user_catalog=/tmp
2013	fi
2014	fi
2015	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2016
2017
2018	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2019	# BESTIMMEN
2020	if [[ "$tmp_data_catalog" = "" ]]
2021	then
2022	if [[ $localhost = ibmb ]]
2023	then
2024	tmp_data_catalog=$WORK/mrun_restart_data
2025	elif [[ $localhost = nech ]]
2026	then
2027	tmp_data_catalog=$WRKSHR/mrun_restart_data
2028	else
2029	tmp_data_catalog=/tmp/mrun_restart_data
2030	fi
2031	fi
2032
2033
2034	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2035	# ERSETZEN
2036	if [[ $do_remote = false && $do_compile = true ]]
2037	then
2038	eval fopts=\"$fopts\"
2039	eval lopts=\"$lopts\"
2040	fi
2041
2042
2043
2044	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2045	fopts="$fopts $netcdf_inc $dvr_inc"
2046	lopts="$lopts $netcdf_lib $dvr_lib"
2047	ROPTS="$ropts"
2048	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2049	then
2050	XOPT="-X $numprocs"
2051	fi
2052
2053
2054
2055	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2056	# GRAMM BENOETIGT
2057	done=false
2058	while [[ $done = false ]]
2059	do
2060	cputime=$cpumax
2061	if (( $cputime == 0 ))
2062	then
2063	if [[ $do_batch = true ]]
2064	then
2065	printf "\n +++ cpu-time is undefined"
2066	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2067	printf "\n >>> "
2068	read cputime 1>/dev/null 2>&1
2069	else
2070	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2071	fi
2072	else
2073	done=true
2074	fi
2075	cpumax=$cputime
2076	done
2077
2078	(( minuten = cputime / 60 ))
2079	(( sekunden = cputime - minuten * 60 ))
2080
2081
2082	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2083	if [[ $do_batch = true ]]
2084	then
2085	done=false
2086	while [[ $done = false ]]
2087	do
2088	if (( memory == 0 ))
2089	then
2090	printf "\n +++ memory demand is undefined"
2091	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2092	printf "\n >>> "
2093	read memory 1>/dev/null 2>&1
2094	else
2095	done=true
2096	fi
2097	done
2098	fi
2099
2100
2101	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2102	if [[ $do_remote = true && -z $remote_username ]]
2103	then
2104	while [[ -z $remote_username ]]
2105	do
2106	printf "\n +++ username on remote host \"$host\" is undefined"
2107	printf "\n >>> Please type username:"
2108	printf "\n >>> "
2109	read remote_username
2110	done
2111	mc="$mc -u$remote_username"
2112	fi
2113
2114
2115	# set module load command and export for subjob
2116	if [[ "$modules" != "" ]]
2117	then
2118	export module_calls="module load ${modules};"
2119	fi
2120
2121	# bugfix for wrong netcdf module
2122	if [[ $remote_host = lcsgib \|\| $remote_host = lcsgih ]]
2123	then
2124	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2125	then
2126	module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2127	fi
2128	fi
2129
2130
2131	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2132	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2133	then
2134	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2135	then
2136	mpilib=mpt
2137	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2138	then
2139	mpilib=mvapich
2140	fi
2141	fi
2142
2143
2144
2145	###########################################################################
2146	# HEADER-AUSGABE
2147	###########################################################################
2148
2149
2150	calltime=$(date)
2151	printf "\n"
2152	# [[ $silent = false ]] && clear
2153	printf "#--------------------------------------------------------------# \n"
2154	printf "\| $version$calltime \| \n"
2155	printf "\| \| \n"
2156	spalte1="called on:"; spalte2=$localhost_realname
2157	printf "\| $spalte1$spalte2 \| \n"
2158	if [[ $local_compile = false ]]
2159	then
2160	if [[ $do_remote = true ]]
2161	then
2162	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2163	else
2164	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2165	fi
2166	else
2167	spalte1="compiling test only!"; spalte2=""
2168	fi
2169	printf "\| $spalte1$spalte2 \| \n"
2170	if [[ -n $numprocs ]]
2171	then
2172	spalte1="number of PEs:"; spalte2=$numprocs
2173	printf "\| $spalte1$spalte2 \| \n"
2174	fi
2175	if [[ -n $tasks_per_node ]]
2176	then
2177	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2178	printf "\| $spalte1$spalte2 \| \n"
2179	fi
2180	if [[ $threads_per_task != 1 ]]
2181	then
2182	spalte1="threads per task:"; spalte2="$threads_per_task"
2183	printf "\| $spalte1$spalte2 \| \n"
2184	fi
2185	printf "\| \| \n"
2186	if [[ $do_compile = true ]]
2187	then
2188	if [[ "$mopts" != "" ]]
2189	then
2190	spalte1="make options:"; spalte2=$mopts
2191	printf "\| $spalte1$spalte2 \| \n"
2192	zeile=$(echo "$mopts" \| cut -c41-)
2193	while [[ "$zeile" != "" ]]
2194	do
2195	spalte1=""
2196	spalte2=$zeile
2197	printf "\| $spalte1$spalte2 \| \n"
2198	zeile=$(echo "$zeile" \| cut -c41-)
2199	done
2200	fi
2201
2202	spalte1="cpp directives:"; spalte2=$cpp_options
2203	printf "\| $spalte1$spalte2 \| \n"
2204	zeile=$(echo "$cpp_options" \| cut -c41-)
2205	while [[ "$zeile" != "" ]]
2206	do
2207	spalte1=""
2208	spalte2=$zeile
2209	printf "\| $spalte1$spalte2 \| \n"
2210	zeile=$(echo "$zeile" \| cut -c41-)
2211	done
2212
2213	spalte1="compiler options:"; spalte2="$fopts"
2214	printf "\| $spalte1$spalte2 \| \n"
2215	zeile=$(echo "$fopts" \| cut -c41-)
2216	while [[ "$zeile" != "" ]]
2217	do
2218	spalte1=""
2219	spalte2=$zeile
2220	printf "\| $spalte1$spalte2 \| \n"
2221	zeile=$(echo "$zeile" \| cut -c41-)
2222	done
2223
2224	spalte1="linker options:"; spalte2=$lopts
2225	printf "\| $spalte1$spalte2 \| \n"
2226	zeile=$(echo "$lopts" \| cut -c41-)
2227	while [[ "$zeile" != "" ]]
2228	do
2229	spalte1=""
2230	spalte2=$zeile
2231	printf "\| $spalte1$spalte2 \| \n"
2232	zeile=$(echo "$zeile" \| cut -c41-)
2233	done
2234
2235	spalte1="modules to be load:"; spalte2=$modules
2236	printf "\| $spalte1$spalte2 \| \n"
2237	zeile=$(echo "$modules" \| cut -c41-)
2238	while [[ "$zeile" != "" ]]
2239	do
2240	spalte1=""
2241	spalte2=$zeile
2242	printf "\| $spalte1$spalte2 \| \n"
2243	zeile=$(echo "$zeile" \| cut -c41-)
2244	done
2245
2246	spalte1="main program":; spalte2=$mainprog
2247	printf "\| $spalte1$spalte2 \| \n"
2248	else
2249	spalte1=executable:; spalte2=$executable
2250	printf "\| $spalte1$spalte2 \| \n"
2251	fi
2252	printf "\| \| \n"
2253	spalte1="base name of files":; spalte2=$fname
2254	printf "\| $spalte1$spalte2 \| \n"
2255	if [[ $fname != $afname ]]
2256	then
2257	spalte1="base name of input files":; spalte2=$afname
2258	printf "\| $spalte1$spalte2 \| \n"
2259	fi
2260	spalte1="INPUT control list":; spalte2=$input_list
2261	printf "\| $spalte1$spalte2 \| \n"
2262	spalte1="OUTPUT control list":; spalte2=$output_list
2263	printf "\| $spalte1$spalte2 \| \n"
2264
2265	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2266	then
2267	spalte1="memory demand / PE":; spalte2="$memory MB"
2268	printf "\| $spalte1$spalte2 \| \n"
2269	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2270	printf "\| $spalte1$spalte2 \| \n"
2271	fi
2272
2273	if [[ $do_compile = true ]]
2274	then
2275	printf "\| \| \n"
2276	printf "\| Files to be compiled: \| \n"
2277	zeile=$source_list
2278	while [[ "$zeile" != "" ]]
2279	do
2280	spalte3=$zeile
2281	printf "\| $spalte3 \| \n"
2282	zeile=$(echo "$zeile" \| cut -c61-)
2283	done
2284	fi
2285	printf "#--------------------------------------------------------------#"
2286
2287
2288
2289	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2290	if [[ $do_trace = true ]]
2291	then
2292	(( i = 0 ))
2293	while (( i < iin ))
2294	do
2295	(( i = i + 1 ))
2296	if (( i == 1 ))
2297	then
2298	printf "\n\n >>> INPUT-file assignments:\n"
2299	fi
2300	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2301	done
2302	(( i = 0 ))
2303	while (( i < iout ))
2304	do
2305	(( i = i + 1 ))
2306	if (( i == 1 ))
2307	then
2308	printf "\n\n >>> OUTPUT-file assignments:\n"
2309	fi
2310	printf "\n ${localout[$i]} : ${pathout[$i]}"
2311	done
2312	(( i = 0 ))
2313	while (( i < iic ))
2314	do
2315	(( i = i + 1 ))
2316	if (( i == 1 ))
2317	then
2318	printf "\n\n >>> INPUT-commands:\n"
2319	fi
2320	printf "\n ${in_command[$i]}"
2321	done
2322	(( i = 0 ))
2323	while (( i < ioc ))
2324	do
2325	(( i = i + 1 ))
2326	if (( i == 1 ))
2327	then
2328	printf "\n\n >>> OUTPUT-commands:\n"
2329	fi
2330	printf "\n ${out_command[$i]}"
2331	done
2332	fi
2333
2334
2335	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2336	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2337	then
2338	antwort=dummy
2339	printf "\n\n"
2340	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2341	do
2342	printf " >>> everything o.k. (y/n) ? "
2343	read antwort
2344	done
2345	if [[ $antwort = n \|\| $antwort = N ]]
2346	then
2347	locat=user_abort; (( iec = 0 )); exit
2348	fi
2349	if [[ $do_batch = true ]]
2350	then
2351	printf " >>> batch-job will be created and submitted"
2352	else
2353	if [[ $local_compile = false ]]
2354	then
2355	printf " >>> MRUN will now continue to execute on this machine"
2356	else
2357	printf " >>> a test compilation will now be carried out on this machine"
2358	fi
2359	fi
2360	fi
2361
2362
2363
2364
2365	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2366	# CHENDE AKTIONEN DURCHGEFUEHRT
2367	if [[ $do_batch = false ]]
2368	then
2369
2370
2371	# TEMPORAEREN KATALOG ERZEUGEN
2372	mkdir -p $TEMPDIR
2373	chmod go+rx $TEMPDIR
2374	tmpcreate=true
2375
2376	# set striping on lustre file system
2377	# if [[ $localhost = lcsgih ]]
2378	# then
2379	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2380	# lfs getstripe $TEMPDIR
2381	# fi
2382
2383
2384	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2385	# TEMPORAERES VERZEICHNIS KOPIEREN
2386	if [[ $do_compile = true ]]
2387	then
2388
2389	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2390	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2391	if [[ $localhost = nech ]]
2392	then
2393	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2394	if mkdir -p $TEMPDIR_COMPILE
2395	then
2396	printf "\n *** \"$TEMPDIR_COMPILE\" "
2397	printf "\n is generated as temporary directory for cross compiling\n"
2398	else
2399	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2400	printf "\n needed for cross compilation failed"
2401	locat=compile
2402	exit
2403	fi
2404	else
2405	TEMPDIR_COMPILE=$TEMPDIR
2406	fi
2407
2408
2409	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2410	line=""
2411	grep "%depository_path" $config_file > tmp_mrun
2412	while read line
2413	do
2414	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2415	then
2416	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2417	then
2418	global_depository_path=`echo $line \| cut -d" " -s -f2`
2419	fi
2420	fi
2421	done < tmp_mrun
2422
2423	line=""
2424	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2425	while read line
2426	do
2427	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2428	then
2429	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2430	then
2431	local_depository_path=`echo $line \| cut -d" " -s -f2`
2432	fi
2433	fi
2434	done < tmp_mrun
2435
2436	if [[ "$local_depository_path" = "" ]]
2437	then
2438	if [[ "$global_depository_path" != "" ]]
2439	then
2440	local_depository_path=$global_depository_path
2441	else
2442	printf "\n\n +++ no depository path found in configuration file"
2443	printf "\n for local host \"$localhost\" "
2444	printf "\n please set \"\%depository_path\" in configuration file\n"
2445	locat=config_file; exit
2446	fi
2447	fi
2448	eval local_depository_path=$local_depository_path
2449	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2450	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2451
2452
2453	basename=`print $mainprog \| cut -f1 -d"."`
2454	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2455	if [[ ! -f $make_depository ]]
2456	then
2457	printf "\n"
2458	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2459	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2460	else
2461	cp $make_depository $TEMPDIR_COMPILE
2462	cd $TEMPDIR_COMPILE
2463	tar -xf $make_depository > /dev/null 2>&1
2464	cd - > /dev/null
2465	fi
2466
2467	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2468
2469	else
2470
2471	cp $executable ${TEMPDIR}/a.out
2472
2473	fi
2474
2475
2476	# WECHSEL IN TEMPORAEREN KATALOG
2477	cd $TEMPDIR
2478	printf "\n *** changed to temporary directory: $TEMPDIR"
2479
2480
2481	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2482	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2483	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2484	# ERMITTELN
2485	(( i = 0 ))
2486	while (( i < iout ))
2487	do
2488	(( i = i + 1 ))
2489	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2490	then
2491	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2492	else
2493	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2494	fi
2495	done
2496
2497
2498	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2499	if [[ $do_compile = true ]]
2500	then
2501
2502
2503	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2504	printf "\n\n\n *** compilation starts \n$striche\n"
2505	printf " *** compilation with make using following options:\n"
2506	printf " make depository: $make_depository"
2507	if [[ "$mopts" != "" ]]
2508	then
2509	printf " make options: $mopts\n"
2510	fi
2511	printf " compilername: $compiler_name\n"
2512	printf " compiler options: $fopts\n"
2513	printf " preprocessor directives: $cpp_options \n"
2514	printf " linker options: $lopts \n"
2515	if [[ "$modules" != "" ]]
2516	then
2517	printf " modules to be load: $modules \n"
2518	fi
2519	printf " source code files: $source_list \n"
2520
2521	if [[ $localhost = nech ]]
2522	then
2523	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2524	cp $TEMPDIR_COMPILE/a.out .
2525	[[ $? != 0 ]] && compile_error=true
2526	rm -rf $TEMPDIR_COMPILE
2527	elif [[ $localhost = ibmh ]]
2528	then
2529	printf " compiler is called via ssh on \"plogin1\" \n"
2530	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2531	[[ ! -f a.out ]] && compile_error=true
2532	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2533	elif [[ $localhost = lcsgib ]]
2534	then
2535	printf " compiler is called via ssh on \"bicegate0\" \n"
2536	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2537	[[ ! -f a.out ]] && compile_error=true
2538	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2539	elif [[ $localhost = lcsgih ]]
2540	then
2541	printf " compiler is called via ssh on \"hicegate0\" \n"
2542	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2543	[[ ! -f a.out ]] && compile_error=true
2544	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2545	else
2546	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2547	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2548	[[ "$module_calls" != "" ]] && eval $module_calls
2549	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2550	fi
2551
2552	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2553	then
2554	printf "\n +++ error occured while compiling or linking"
2555	locat=compile
2556
2557	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2558	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2559	# then
2560	exit
2561	# else
2562	# locat=normal
2563	# fi
2564	else
2565	printf "$striche\n *** compilation finished \n"
2566	fi
2567	fi
2568
2569
2570	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2571	if [[ $local_compile = true ]]
2572	then
2573	cd $HOME
2574	rm -rf $TEMPDIR
2575	locat=local_compile; exit
2576	fi
2577
2578
2579	# BEREITSTELLEN DER INPUT-DATEIEN
2580	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2581	(( i = 0 ))
2582	while (( i < iin ))
2583	do
2584	(( i = i + 1 ))
2585	if (( i == 1 ))
2586	then
2587	printf "\n\n *** providing INPUT-files:\n$striche"
2588	fi
2589
2590
2591	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2592	if [[ "${transin[$i]}" = unavailable ]]
2593	then
2594	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2595	then
2596	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2597	printf "\n is not available!"
2598	else
2599	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2600	printf "\n is not available!"
2601	fi
2602	continue
2603	fi
2604
2605	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2606	files_for_pes=false; datentyp=file
2607	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2608	then
2609	files_for_pes=true; datentyp=directory
2610	actionin[$i]=""
2611	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2612	then
2613	actionin[$i]=""
2614	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2615	then
2616	files_for_pes=true; datentyp=directory
2617	actionin[$i]="ar"
2618	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2619	then
2620	actionin[$i]="ar"
2621	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2622	then
2623	files_for_pes=true; datentyp=directory
2624	actionin[$i]="fl"
2625	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2626	then
2627	actionin[$i]="fl"
2628	fi
2629
2630	if [[ $files_for_pes = true ]]
2631	then
2632	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2633	else
2634	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2635	fi
2636
2637	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2638	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2639	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2640	# SERVER ZU HOLEN
2641	if [[ "${actionin[$i]}" = fl ]]
2642	then
2643	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2644	if [[ $files_for_pes = false ]]
2645	then
2646	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2647	then
2648	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2649	got_tmp[$i]=true
2650	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2651	then
2652	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2653	printf "\n *** trying to use backup copy in \"$WORK\" "
2654	cp $WORK/${frelin[$i]} ${localin[$i]}
2655	else
2656	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2657	printf "\n or \"$tmp_data_catalog\" does not exist!"
2658	printf "\n *** trying to get copy from archive"
2659	actionin[$i]=ar
2660	fi
2661	else
2662	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2663	then
2664	mkdir ${localin[$i]}
2665	cd $tmp_data_catalog/${frelin[$i]}
2666	for file in $(ls *)
2667	do
2668	ln $file $TEMPDIR/${localin[$i]}
2669	done
2670	cd $TEMPDIR
2671	got_tmp[$i]=true
2672	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2673	then
2674	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2675	printf "\n *** trying to use backup copy in \"$WORK\" "
2676	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2677	else
2678	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2679	printf "\n or \"$tmp_data_catalog\" does not exist!"
2680	printf "\n *** trying to get copy from archive"
2681	actionin[$i]=ar
2682	fi
2683	fi
2684	fi
2685
2686
2687	# DATEI LIEGT AUF ARCHIV-SERVER
2688	if [[ "${actionin[$i]}" = ar ]]
2689	then
2690
2691	if [[ $files_for_pes = false ]]
2692	then
2693	printf "\n file will be restored from archive-system ($archive_system)!"
2694	else
2695	printf "\n directory will be restored from archive-system ($archive_system)!"
2696	fi
2697
2698	file_restored=false
2699
2700	if [[ $archive_system = asterix ]]
2701	then
2702	do_stagein=true
2703	(( stagein_anz = 0 ))
2704	while [[ $do_stagein = true ]]
2705	do
2706	if [[ $files_for_pes = false ]]
2707	then
2708	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2709	else
2710	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2711	fi
2712	cat STAGEIN_OUTPUT
2713	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2714	then
2715	file_restored=true
2716	do_stagein=false
2717	else
2718	(( stagein_anz = stagein_anz + 1 ))
2719	if (( stagein_anz == 10 ))
2720	then
2721	printf "\n +++ stagein stoped after 10 tries"
2722	locat=stage
2723	exit
2724	fi
2725	printf "\n +++ restoring from archive failed, trying again:"
2726	sleep 900
2727	fi
2728	done
2729	elif [[ $archive_system = DMF ]]
2730	then
2731	if [[ $files_for_pes = false ]]
2732	then
2733	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2734	locat=DMF
2735	exit
2736	else
2737	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2738	cp -r $ARCHIVE/${frelin[$i]} $PWD
2739	file_restored=true
2740	fi
2741	elif [[ $archive_system = tivoli ]]
2742	then
2743	if [[ $files_for_pes = false ]]
2744	then
2745	if [[ $localhost = lcsgih ]]
2746	then
2747	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2748	else
2749	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2750	fi
2751	else
2752	(( inode = 0 ))
2753	while (( inode < nodes ))
2754	do
2755	if [[ $localhost = lcsgih ]]
2756	then
2757	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2758	else
2759	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2760	fi
2761	(( inode = inode + 1 ))
2762	done
2763	fi
2764	file_restored=true
2765	elif [[ $archive_system = ut ]]
2766	then
2767	if [[ $files_for_pes = false ]]
2768	then
2769	cp $UT/${frelin[$i]} .
2770	else
2771	(( inode = 0 ))
2772	while (( inode < nodes ))
2773	do
2774	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2775	(( inode = inode + 1 ))
2776	done
2777	fi
2778	file_restored=true
2779	else
2780	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2781	locat=rearchive
2782	exit
2783	fi
2784
2785	if [[ $file_restored = true ]]
2786	then
2787
2788	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2789	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2790	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2791	if [[ $files_for_pes = false ]]
2792	then
2793	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2794	else
2795	mkdir $tmp_data_catalog/${frelin[$i]}
2796	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2797	fi
2798	got_tmp[$i]=true
2799
2800	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2801	mv ${frelin[$i]} ${localin[$i]}
2802
2803	fi
2804	fi
2805
2806
2807	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2808	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2809	then
2810
2811	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2812	then
2813
2814	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2815	printf "\n file will be provided for $numprocs processors"
2816	mkdir ${localin[$i]}
2817	ival=$numprocs
2818	(( ii = 0 ))
2819	while (( ii <= ival-1 ))
2820	do
2821	if (( ii < 10 ))
2822	then
2823	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2824	elif (( ii < 100 ))
2825	then
2826	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2827	elif (( ii < 1000 ))
2828	then
2829	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2830	else
2831	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2832	fi
2833	(( ii = ii + 1 ))
2834	done
2835
2836	else
2837
2838	if [[ $files_for_pes = true ]]
2839	then
2840
2841	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2842	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2843	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2844	# PER MOVE UMBENANNT WERDEN
2845	printf "\n providing $numprocs files for the respective processors"
2846	mkdir ${localin[$i]}
2847	if [[ $link_local_input = true ]]
2848	then
2849	printf " using ln -f\n"
2850	cd ${absnamein[$i]}
2851	for file in $(ls *)
2852	do
2853	ln -f $file ${localin[$i]}
2854	done
2855	cd $TEMPDIR
2856	fi
2857	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2858	if [[ ! -f "${localin[$i]}/_0000" ]]
2859	then
2860	if [[ $link_local_input = true ]]
2861	then
2862	printf " ln failed for .../_0000, using cp...\n"
2863	fi
2864	cp -r ${absnamein[$i]}/* ${localin[$i]}
2865	fi
2866
2867	else
2868	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2869	if [[ $link_local_input = true ]]
2870	then
2871	printf " using ln -f\n"
2872	ln -f ${absnamein[$i]} ${localin[$i]}
2873	fi
2874	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2875	if [[ ! -f "${localin[$i]}" ]]
2876	then
2877	if [[ $link_local_input = true ]]
2878	then
2879	printf " ln failed, using cp...\n"
2880	fi
2881	cp ${absnamein[$i]} ${localin[$i]}
2882	fi
2883	fi
2884	fi
2885	fi
2886
2887	done
2888	if (( i != 0 ))
2889	then
2890	printf "\n$striche\n *** all INPUT-files provided \n"
2891	fi
2892
2893
2894	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2895	(( i = 0 ))
2896	while (( i < iic ))
2897	do
2898	(( i = i + 1 ))
2899	if (( i == 1 ))
2900	then
2901	printf "\n\n *** execution of INPUT-commands:\n$striche"
2902	fi
2903	printf "\n >>> ${in_command[$i]}"
2904	eval ${in_command[$i]}
2905	if (( i == iic ))
2906	then
2907	printf "\n$striche\n"
2908	fi
2909	done
2910
2911
2912	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2913	cpurest=${cpumax}.
2914
2915
2916	# START DVR STREAMING SERVER
2917	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2918	then
2919	if [[ "$dvr_server" != "" ]]
2920	then
2921
2922	printf "\n\n *** preparing the dvr streaming server configuration file"
2923
2924	# Check, if a dvr server is already running
2925	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2926	if [[ "$running_dvrserver_id" != "" ]]
2927	then
2928
2929	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2930	printf "\n This server is used instead starting a new one!"
2931	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2932
2933	else
2934
2935	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2936	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2937	then
2938	cp ${PALM_BIN}/.dvrserver.config .
2939
2940	# Entering the BASEDIR, UID and GID into this file
2941	user_id=`id -u`
2942	group_id=`id -g`
2943	# & is needed as seperator, because TEMPDIR contains /
2944	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2945	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2946	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2947	mv .dvrserver.3 .dvrserver.config
2948	rm .dvrserver.1 .dvrserver.2
2949
2950	# Start dvr server in background, get his id and print on terminal
2951	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2952	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2953	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2954	local_dvrserver_running=.TRUE.
2955	else
2956	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2957	printf "\n \"$PALM_BIN\" "
2958	locat=dvr
2959	exit
2960	fi
2961
2962	fi
2963
2964	else
2965	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2966	fi
2967	fi
2968
2969
2970	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2971	# LESEN VON PALM)
2972	cat > ENVPAR << %%END%%
2973	&envpar run_identifier = '$fname', host = '$localhost',
2974	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2975	maximum_cpu_time_allowed = ${cpumax}.,
2976	revision = '$global_revision',
2977	local_dvrserver_running = $local_dvrserver_running /
2978
2979	%%END%%
2980
2981
2982	# PROGRAMMSTART
2983	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2984	PATH=$PATH:$TEMPDIR
2985
2986	# MPI debug option (argument checking, slows down execution due to increased latency)
2987	if [[ "$mpi_debug" = true ]]
2988	then
2989	export MPI_CHECK_ARGS=1
2990	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2991	fi
2992
2993	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2994	then
2995	if [[ "$ENVIRONMENT" = BATCH ]]
2996	then
2997	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2998	then
2999	printf "\n +++ debug is allowed in interactive mode only"
3000	locat=debug
3001	exit
3002	fi
3003	fi
3004	if [[ $localhost = decalpha ]]
3005	then
3006	dxladebug a.out
3007	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
3008	then
3009
3010	# SETUP THE IBM MPI ENVIRONMENT
3011	export MP_SHARED_MEMORY=yes
3012	export AIXTHREADS_SCOPE=S
3013	export OMP_NUM_THREADS=$threads_per_task
3014	export AUTHSTATE=files
3015	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3016
3017	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3018	export MP_ADAPTER_USE=shared
3019	export MP_CPU_USE=multiple
3020	export MP_TIMEOUT=1200
3021
3022	unset MP_TASK_AFFINITY
3023
3024	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3025	#(( ii = 1 ))
3026	#while (( ii <= $numprocs ))
3027	#do
3028	# echo $localhost_realname >> hostfile
3029	# (( ii = ii + 1 ))
3030	#done
3031	#export MP_HOSTFILE=hostfile
3032
3033	if [[ "$LOADLBATCH" = yes ]]
3034	then
3035	totalview poe a.out $ROPTS
3036	else
3037	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3038	export TVDSVRLAUNCHCMD=ssh
3039	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3040	fi
3041	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3042	then
3043	# CURRENTLY NO DEBUGGER ON LCSGI
3044	if [[ $run_coupled_model = true ]]
3045	then
3046	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3047	locat=debug
3048	exit
3049	else
3050	echo "no_coupling" > runfile_atmos
3051	fi
3052	(( ii = $numprocs / $threads_per_task ))
3053	export OMP_NUM_THREADS=$threads_per_task
3054	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3055	if [[ $threads_per_task != 1 ]]
3056	then
3057	printf "\n threads per task: $threads_per_task"
3058	fi
3059	printf "\n\n"
3060	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3061	then
3062	# export MPI_LAUNCH_TIMEOUT=360
3063	if [[ "$totalview" = true ]]
3064	then
3065	printf "\n running totalview debugger"
3066	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3067	else
3068	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3069	fi
3070	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3071	then
3072	# ulimit -s 300000 # A too large stack size causes problems
3073	# export MV2_NUM_PORTS=2
3074	# export MV2_CPU_MAPPING=0:1:2:3
3075	if [[ "$totalview" = true ]]
3076	then
3077	printf "\n running totalview debugger"
3078	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3079	else
3080	mpiexec ./a.out $ROPTS < runfile_atmos
3081	fi
3082	fi
3083	else
3084	printf "\n +++ no debug available on \"$localhost\" "
3085	printf "\n or not implemented in mrun so far"
3086	locat=debug
3087	exit
3088	fi
3089	else
3090	if [[ -n $numprocs ]]
3091	then
3092	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3093	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3094	then
3095	# SETUP THE IBM MPI ENVIRONMENT
3096	if [[ $host != ibmh ]]
3097	then
3098	export MP_SHARED_MEMORY=yes
3099	export AIXTHREAD_SCOPE=S
3100	export OMP_NUM_THREADS=$threads_per_task
3101	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3102	export AUTHSTATE=files
3103	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3104	# export MP_PRINTENV=yes
3105
3106	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3107	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3108	export MP_WAIT_MODE=poll
3109	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3110	fi
3111	if [[ "$LOADLBATCH" = yes ]]
3112	then
3113	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3114	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3115	then
3116	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3117	else
3118	if [[ $run_coupled_model = false ]]
3119	then
3120	if [[ "$ocean_file_appendix" = true ]]
3121	then
3122	echo "precursor_ocean" > runfile_atmos
3123	else
3124	echo "precursor_atmos" > runfile_atmos
3125	fi
3126	else
3127	(( iia = $numprocs_atmos / $threads_per_task ))
3128	(( iio = $numprocs_ocean / $threads_per_task ))
3129	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3130	printf "\n using $coupled_mode coupling"
3131	printf "\n\n"
3132	echo "coupled_run $iia $iio" > runfile_atmos
3133	fi
3134	poe ./a.out $ROPTS < runfile_atmos
3135	fi
3136	else
3137	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3138	then
3139	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3140	elif [[ $localhost = ibmy ]]
3141	then
3142	if [[ -f $hostfile ]]
3143	then
3144	cp $hostfile hostfile
3145	else
3146	(( ii = 1 ))
3147	while (( ii <= $numprocs ))
3148	do
3149	echo $localhost_realname >> hostfile
3150	(( ii = ii + 1 ))
3151	done
3152	fi
3153	export MP_HOSTFILE=hostfile
3154	if [[ $run_coupled_model = false ]]
3155	then
3156	if [[ "$ocean_file_appendix" = true ]]
3157	then
3158	echo "precursor_ocean" > runfile_atmos
3159	else
3160	echo "precursor_atmos" > runfile_atmos
3161	fi
3162	else
3163	(( iia = $numprocs_atmos / $threads_per_task ))
3164	(( iio = $numprocs_ocean / $threads_per_task ))
3165	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3166	printf "\n using $coupled_mode coupling"
3167	printf "\n\n"
3168	echo "coupled_run $iia $iio" > runfile_atmos
3169	fi
3170	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3171
3172	else
3173	if [[ "$host_file" = "" ]]
3174	then
3175	printf "\n +++ no hostfile given in configuration file"
3176	locat=config_file
3177	exit
3178	else
3179	eval host_file=$host_file
3180	fi
3181	export MP_HOSTFILE=$host_file
3182	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3183	fi
3184	fi
3185	elif [[ $host = nech \|\| $host = necriam ]]
3186	then
3187	(( ii = nodes ))
3188	if [[ $ii = 1 ]]
3189	then
3190	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3191	export MPIPROGINF=YES
3192	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3193	echo "*** execution on single node with mpirun"
3194	mpirun -np $numprocs ./a.out $ROPTS
3195	else
3196	(( i = 0 ))
3197	while (( i < ii ))
3198	do
3199	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3200	(( i = i + 1 ))
3201	done
3202
3203	echo "#!/bin/sh" > mpi_exec_shell
3204	echo " " >> mpi_exec_shell
3205	echo "set -u" >> mpi_exec_shell
3206	echo "F_ERRCNT=0" >> mpi_exec_shell
3207	echo "MPIPROGINV=YES" >> mpi_exec_shell
3208	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3209	echo "cpurest=$cpurest" >> mpi_exec_shell
3210	echo "fname=$fname" >> mpi_exec_shell
3211	echo "localhost=$localhost" >> mpi_exec_shell
3212	echo "return_addres=$return_addres" >> mpi_exec_shell
3213	echo "return_username=$return_username" >> mpi_exec_shell
3214	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3215	echo "write_binary=$write_binary" >> mpi_exec_shell
3216	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3217	echo " " >> mpi_exec_shell
3218	echo "export F_ERRCNT" >> mpi_exec_shell
3219	echo "export MPIPROGINV" >> mpi_exec_shell
3220	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3221	echo "export cpurest" >> mpi_exec_shell
3222	echo "export fname" >> mpi_exec_shell
3223	echo "export localhost" >> mpi_exec_shell
3224	echo "export return_addres" >> mpi_exec_shell
3225	echo "export return_username" >> mpi_exec_shell
3226	echo "export tasks_per_node" >> mpi_exec_shell
3227	echo "export write_binary" >> mpi_exec_shell
3228	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3229	echo " " >> mpi_exec_shell
3230	echo "exec ./a.out" >> mpi_exec_shell
3231
3232	chmod u+x mpi_exec_shell
3233	export MPIPROGINF=YES
3234	mpirun -f multinode_config &
3235	wait
3236
3237	fi
3238	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3239	then
3240
3241	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3242	# DOES NOT EXIST
3243	if [[ $host != lcsgih && $host != lcsgib ]]
3244	then
3245	if [[ -f $hostfile ]]
3246	then
3247	cp $hostfile hostfile
3248	else
3249	(( ii = 1 ))
3250	while (( ii <= $numprocs / $threads_per_task ))
3251	do
3252	echo $localhost_realname >> hostfile
3253	(( ii = ii + 1 ))
3254	done
3255	fi
3256	eval zeile=\"`head -n $ii hostfile`\"
3257	printf "\n *** running on: $zeile"
3258	fi
3259
3260	(( ii = $numprocs / $threads_per_task ))
3261	export OMP_NUM_THREADS=$threads_per_task
3262	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3263	if [[ $threads_per_task != 1 ]]
3264	then
3265	# increase stack size to unlimited, because large runs
3266	# may abort otherwise
3267	ulimit -Ss unlimited
3268	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3269	fi
3270	if [[ $run_coupled_model = false ]]
3271	then
3272	if [[ "$ocean_file_appendix" = true ]]
3273	then
3274	echo "precursor_ocean" > runfile_atmos
3275	else
3276	echo "precursor_atmos" > runfile_atmos
3277	fi
3278	printf "\n\n"
3279	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3280	then
3281	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3282	then
3283	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3284	# export MPI_DSM_DISTRIBUTE=1
3285	# MPI_DSM_CPULIST: pin MPI processes to cores
3286	if [[ $use_openmp = false ]]
3287	then
3288	if [[ "$sgi_feature" = ice2 ]]
3289	then
3290	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3291	else
3292	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3293	fi
3294	fi
3295	# MPI_IB_RAILS: use both IB rails on ICE2
3296	export MPI_BUFS_PER_HOST=512
3297	export MPI_IB_RAILS=2
3298	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3299	export MPI_CONNECTIONS_THRESHOLD=8192
3300	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3301	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3302
3303	# next is test for openmp usage
3304	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3305	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3306	then
3307	export MV2_NUM_PORTS=2
3308	# The default setting of MV2_CPU_MAPPING gives best results
3309	# export MV2_ENABLE_AFFINITY=1
3310	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3311	# if [[ "$sgi_feature" = ice2 ]]
3312	# then
3313	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3314	# else
3315	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3316	# fi
3317	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3318	if [[ $threads_per_task != 1 ]]
3319	then
3320	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3321	else
3322	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3323	fi
3324	fi
3325	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3326	then
3327	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3328	else
3329	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3330	fi
3331	else
3332
3333	# currently there is no full MPI-2 support on ICE and XT4
3334	(( iia = $numprocs_atmos / $threads_per_task ))
3335	(( iio = $numprocs_ocean / $threads_per_task ))
3336	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3337	printf "\n using $coupled_mode coupling"
3338	printf "\n\n"
3339
3340	if [[ $coupled_mode = "mpi2" ]]
3341	then
3342	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3343	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3344	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3345	then
3346
3347	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3348	then
3349	# export MPI_LAUNCH_TIMEOUT=360
3350	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3351	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3352	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3353	then
3354	# ulimit -s 300000 # A too large stack size causes problems
3355	# export MV2_NUM_PORTS=2
3356	# export MV2_CPU_MAPPING=0:1:2:3
3357	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3358	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3359	fi
3360
3361	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3362	then
3363
3364	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3365	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3366
3367	else
3368	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3369	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3370	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3371	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3372	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3373	fi
3374	wait
3375
3376	else
3377
3378	echo "coupled_run $iia $iio" > runfile_atmos
3379	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3380	then
3381
3382	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3383	then
3384	# export MPI_LAUNCH_TIMEOUT=360
3385	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3386	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3387	then
3388	# ulimit -s 300000 # A too large stack size causes problems
3389	# export MV2_NUM_PORTS=2
3390	# export MV2_CPU_MAPPING=0:1:2:3
3391	mpiexec ./a.out $ROPTS < runfile_atmos
3392	fi
3393
3394	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3395	then
3396
3397	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3398
3399	elif [[ $host = lck ]]
3400	then
3401	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3402	fi
3403	wait
3404	fi
3405
3406	fi
3407	elif [[ $host = decalpha ]]
3408	then
3409	dmpirun -np $numprocs a.out $ROPTS
3410	elif [[ $host = lckyoto ]]
3411	then
3412	set -xv
3413	export P4_RSHCOMMAND=plesh
3414	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3415	if [[ "$ENVIRONMENT" = BATCH ]]
3416	then
3417	if [[ "$cond2" = fujitsu ]]
3418	then
3419	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3420	elif [[ "cond2" = pgi ]]
3421	then
3422	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3423	else
3424	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3425	fi
3426	else
3427	if [[ "$cond2" = "" ]]
3428	then
3429	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3430	else
3431	mpirun -np $numprocs ./a.out $ROPTS
3432	fi
3433	fi
3434	set +xv
3435	elif [[ $host = lctit ]]
3436	then
3437	export runfile=runfile.$kennung
3438
3439	echo "cd $PWD" > $runfile
3440	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3441	echo "export cpurest=$cpurest" >> $runfile
3442	echo "export fname=$fname" >> $runfile
3443	echo "export localhost=$localhost" >> $runfile
3444	echo "export return_addres=$return_addres" >> $runfile
3445	echo "export return_username=$return_username" >> $runfile
3446	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3447	echo "export write_binary=$write_binary" >> $runfile
3448	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3449	echo "./a.out" >> $runfile
3450	chmod u+x $runfile
3451
3452	if [[ "$QUEUE" = interactive ]]
3453	then
3454	mpirun -np $numprocs a.out $ROPTS
3455	else
3456	(( mem_tsubame = $memory / 1024.0 ))
3457	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3458	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3459	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3460	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3461	fi
3462
3463	rm $runfile
3464	else
3465	mpprun -n $numprocs a.out $ROPTS
3466	fi
3467	[[ $? != 0 ]] && execution_error=true
3468
3469
3470	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3471	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3472	then
3473	apprentice
3474	fi
3475	else
3476	a.out $ROPTS
3477	fi
3478	fi
3479	if [[ $? != 0 \|\| $execution_error = true ]]
3480	then
3481
3482	# ABBRUCH BEI LAUFZEITFEHLER
3483	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3484	printf "\n +++ runtime error occured"
3485	locat=execution
3486	exit
3487	else
3488	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3489	printf "\n$striche\n *** execution finished \n"
3490
3491	# Stop the dvr streaming server and process the dvr output in order
3492	# to create dvrs- and html-files containing all streams
3493	if [[ "$dvrserver_id" != "" ]]
3494	then
3495	kill $dvrserver_id
3496	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3497
3498	# If there is a directory, data have been output by the
3499	# streaming server. Otherwise, user has chosen dvrp_output=local
3500	if [[ -d DATA_DVR ]]
3501	then
3502
3503	# Add the current dvr configuration file to the dvr output
3504	# directory
3505	cp .dvrserver.config DATA_DVR
3506
3507	# Process the dvr output (option -s for also generating
3508	# sequence mode data)
3509	process_dvr_output -d DATA_DVR -f $fname -s
3510
3511	else
3512
3513	# Process the local output
3514	process_dvr_output -l -d DATA_DVR -f $fname
3515
3516	fi
3517
3518	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3519	then
3520
3521	# Process dvr output generated in local mode (dvrp_output=local)
3522	process_dvr_output -l -d DATA_DVR -f $fname
3523
3524	fi
3525	fi
3526
3527
3528
3529	# Call of combine_plot_fields in order to merge single files written
3530	# by each PE into one file.
3531	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3532	then
3533	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3534	printf "\n 2d- and/or 3d-data may be incomplete!"
3535	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3536	else
3537	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3538	combine_plot_fields${block}.x
3539	fi
3540
3541
3542
3543	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3544	(( i = 0 ))
3545	while (( i < ioc ))
3546	do
3547	(( i = i + 1 ))
3548	if (( i == 1 ))
3549	then
3550	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3551	fi
3552	printf "\n >>> ${out_command[$i]}"
3553	eval ${out_command[$i]}
3554	if (( i == ioc ))
3555	then
3556	printf "\n$striche\n"
3557	fi
3558	done
3559
3560
3561	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3562	if [[ $do_trace = true ]]
3563	then
3564	printf "\n\n"
3565	ls -al
3566	fi
3567
3568
3569
3570	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3571	(( i = 0 ))
3572	while (( i < iout ))
3573	do
3574	(( i = i + 1 ))
3575	if (( i == 1 ))
3576	then
3577	printf "\n\n *** saving OUTPUT-files:\n$striche"
3578	fi
3579
3580	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3581	files_for_pes=false; filetyp=file
3582	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3583	then
3584	files_for_pes=true; filetyp=directory
3585	actionout[$i]=""
3586	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3587	then
3588	actionout[$i]=""
3589	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3590	then
3591	files_for_pes=true; filetyp=directory
3592	actionout[$i]="ar"
3593	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3594	then
3595	actionout[$i]="ar"
3596	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3597	then
3598	files_for_pes=true; filetyp=directory
3599	actionout[$i]="fl"
3600	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3601	then
3602	actionout[$i]="fl"
3603	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3604	then
3605	files_for_pes=true; filetyp=directory
3606	actionout[$i]="tr"
3607	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3608	then
3609	actionout[$i]="tr"
3610	fi
3611
3612	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3613	then
3614	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3615	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3616	then
3617	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3618	else
3619
3620
3621	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3622	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3623	# REMOTE-RECHNUNGEN
3624	if [[ "${actionout[$i]}" = tr ]]
3625	then
3626	if [[ $localhost != $fromhost ]]
3627	then
3628	if [[ $files_for_pes = false ]]
3629	then
3630	cps=""
3631	cst=""
3632	else
3633	cps=-c
3634	cst="/"
3635	fi
3636	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3637	then
3638
3639	# TRANSFER IN EIGENSTAENDIGEM JOB
3640	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3641	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3642	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3643	if [[ $files_for_pes = false ]]
3644	then
3645	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3646	else
3647	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3648	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3649	fi
3650
3651	echo "set -x" > transfer_${localout[$i]}
3652	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3653
3654	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3655	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3656	printf "\n or higher cycle\n"
3657	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3658
3659	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3660
3661	if [[ $localhost = nech ]]
3662	then
3663	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3664	else
3665	if [[ "$LOGNAME" = b323013 ]]
3666	then
3667	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3668	else
3669	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3670	fi
3671	fi
3672
3673	else
3674
3675	# TRANSFER INNERHALB DIESES JOBS
3676	transfer_failed=false
3677	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3678	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3679	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3680	[[ $? != 0 ]] && transfer_failed=true
3681
3682	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3683	# LOKALER MASCHINE ANLEGEN
3684	if [[ $transfer_failed = true ]]
3685	then
3686	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3687	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3688
3689	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3690	# ANLEGEN.
3691	eval local_catalog=${pathout[$i]}
3692	if [[ ! -d $local_catalog ]]
3693	then
3694	printf " *** local directory does not exist. Trying to create:\n"
3695	printf " $local_catalog \n"
3696	mkdir -p $local_catalog
3697	fi
3698	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3699	transfer_problems=true
3700	fi
3701	fi
3702	else
3703
3704	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3705	actionout[$i]=""
3706	fi
3707	fi
3708
3709
3710	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3711	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3712	# REMOTE-RECHNUNGEN
3713	if [[ "${actionout[$i]}" = tra ]]
3714	then
3715	if [[ $localhost != $fromhost ]]
3716	then
3717	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3718	then
3719
3720	# TRANSFER IN EIGENSTAENDIGEM JOB
3721	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3722	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3723	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3724	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3725
3726	echo "set -x" > transfer_${localout[$i]}
3727	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3728
3729	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3730	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3731	printf "\n or higher cycle\n"
3732	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3733
3734	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3735
3736	if [[ $localhost = nech ]]
3737	then
3738	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3739	else
3740	if [[ $LOGNAME = b323013 ]]
3741	then
3742	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3743	else
3744	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3745	fi
3746	fi
3747
3748	else
3749
3750	# TRANSFER INNERHALB DIESES JOBS
3751	transfer_failed=false
3752	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3753	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3754	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3755	[[ $? != 0 ]] && transfer_failed=true
3756
3757	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3758	# LOKALER MASCHINE ANLEGEN
3759	if [[ $transfer_failed = true ]]
3760	then
3761	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3762	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3763
3764	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3765	# ANLEGEN
3766	eval local_catalog=${pathout[$i]}
3767	if [[ ! -d $local_catalog ]]
3768	then
3769	printf " *** local directory does not exist. Trying to create:\n"
3770	printf " $local_catalog \n"
3771	mkdir -p $local_catalog
3772	fi
3773
3774	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3775	transfer_problems=true
3776	fi
3777	fi
3778	else
3779
3780	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3781	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3782	actionout[$i]=a
3783	fi
3784	fi
3785
3786
3787	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3788	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3789	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3790	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3791	if [[ "${actionout[$i]}" = fl ]]
3792	then
3793	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3794	chmod g+rx $tmp_data_catalog
3795	if [[ $files_for_pes = false ]]
3796	then
3797	printf "\n >>> OUTPUT: ${localout[$i]} to"
3798	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3799	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3800	else
3801	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3802	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3803	mkdir $tmp_data_catalog/${frelout[$i]}
3804	cd ${localout[$i]}
3805	for file in $(ls *)
3806	do
3807	ln -f $file $tmp_data_catalog/${frelout[$i]}
3808	done
3809	cd $TEMPDIR
3810	fi
3811
3812
3813	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3814	if [[ $store_on_archive_system = true ]]
3815	then
3816
3817	if [[ $archive_system = asterix ]]
3818	then
3819	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3820	if [[ $files_for_pes = false ]]
3821	then
3822	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3823	else
3824	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3825	fi
3826	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3827	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3828	echo "then" >> archive_${frelout[$i]}
3829	echo " do_stageout=false" >> archive_${frelout[$i]}
3830	echo "else" >> archive_${frelout[$i]}
3831	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3832	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3833	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3834	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3835	if [[ $files_for_pes = false ]]
3836	then
3837	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3838	else
3839	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3840	fi
3841	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3842	echo "fi" >> archive_${frelout[$i]}
3843	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3844	elif [[ $archive_system = DMF ]]
3845	then
3846	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3847	if [[ $files_for_pes = false ]]
3848	then
3849	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3850	locat=DMF
3851	exit
3852	else
3853	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3854	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3855	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3856	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3857	fi
3858	elif [[ $archive_system = tivoli ]]
3859	then
3860	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3861	if [[ $files_for_pes = false ]]
3862	then
3863	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3864	echo "set -x" >> archive_${frelout[$i]}
3865	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3866	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3867	else
3868
3869	echo "set -x" >> archive_${frelout[$i]}
3870	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3871	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3872	cd $tmp_data_catalog
3873	all_files=`ls -1 ${frelout[$i]}/*`
3874	cd - > /dev/null
3875	(( inode = 0 ))
3876	(( tp1 = tasks_per_node + 1 ))
3877	while (( inode < nodes ))
3878	do
3879	# echo "*** all_files = \"$all_files\" "
3880	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3881	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3882	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3883	# echo "*** files = \"$files\" "
3884	# echo "*** all_files = \"$all_files\" "
3885	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3886	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3887	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3888	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3889	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3890	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3891	(( inode = inode + 1 ))
3892	done
3893	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3894	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3895	fi
3896	elif [[ $archive_system = ut ]]
3897	then
3898	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3899	if [[ $files_for_pes = false ]]
3900	then
3901	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3902	echo "set -x" >> archive_${frelout[$i]}
3903	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3904	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3905	else
3906
3907	echo "set -x" >> archive_${frelout[$i]}
3908	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3909	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3910	cd $tmp_data_catalog
3911	all_files=`ls -1 ${frelout[$i]}/*`
3912	cd - > /dev/null
3913	(( inode = 0 ))
3914	(( tp1 = tasks_per_node + 1 ))
3915	while (( inode < nodes ))
3916	do
3917	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3918	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3919	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3920	(( inode = inode + 1 ))
3921	done
3922	fi
3923	elif [[ $archive_system = none ]]
3924	then
3925	printf " +++ archiving on $localhost not available!\n"
3926	fi
3927
3928	if [[ $archive_system != none ]]
3929	then
3930	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3931	then
3932	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3933	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3934	elif [[ $localhost = nech ]]
3935	then
3936	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3937	fi
3938	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3939	fi
3940	else
3941	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3942	fi
3943
3944
3945	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3946	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3947	if [[ $files_for_pes = false ]]
3948	then
3949	cat /dev/null > ${pathout[$i]}
3950	else
3951	mkdir -p ${pathout[$i]}
3952	fi
3953
3954	fi
3955
3956
3957	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3958	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3959	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3960	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3961	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3962	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3963	if [[ "${actionout[$i]}" = ar ]]
3964	then
3965	if [[ $files_for_pes = false ]]
3966	then
3967	printf "\n >>> OUTPUT: ${localout[$i]} to"
3968	printf "\n ${pathout[$i]}"
3969	printf "\n File will be copied to archive-system ($archive_system) !\n"
3970	else
3971	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3972	printf "\n ${pathout[$i]}"
3973	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3974	fi
3975	mv ${localout[$i]} ${frelout[$i]}
3976
3977	file_saved=false
3978
3979	if [[ $archive_system = asterix ]]
3980	then
3981	do_stageout=true
3982	(( stageout_anz = 0 ))
3983	while [[ $do_stageout = true ]]
3984	do
3985	if [[ $files_for_pes = false ]]
3986	then
3987	stageout ${frelout[$i]} > STAGE_OUTPUT
3988	else
3989	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3990	fi
3991	cat STAGE_OUTPUT
3992	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3993	then
3994	file_saved=true
3995	do_stageout=false
3996	else
3997	if [[ $files_for_pes = false ]]
3998	then
3999	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4000	else
4001	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4002	fi
4003	(( stageout_anz = stageout_anz + 1 ))
4004	if (( stageout_anz == 10 ))
4005	then
4006	printf "\n +++ stoped after 10 unsuccessful tries!"
4007	archive_save=false
4008	do_stageout=false
4009	else
4010	printf "\n *** new try to store on archive after 15 min:"
4011	sleep 900
4012	fi
4013	fi
4014	done
4015	elif [[ $archive_system = DMF ]]
4016	then
4017	if [[ $files_for_pes = false ]]
4018	then
4019	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4020	locat=DMF
4021	exit
4022	else
4023	rm -rf $ARCHIVE/${frelout[$i]}
4024	cp -r ${frelout[$i]} $ARCHIVE
4025	fi
4026	file_saved=true
4027	elif [[ $archive_system = tivoli ]]
4028	then
4029	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4030	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4031	# GELEGT WERDEN
4032	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4033	chmod g+rx $tmp_data_catalog
4034	if [[ $files_for_pes = false ]]
4035	then
4036	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4037	else
4038	mkdir $tmp_data_catalog/${frelout[$i]}
4039	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4040	fi
4041
4042	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4043	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4044	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4045	if [[ $files_for_pes = false ]]
4046	then
4047	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4048	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4049	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4050	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4051	else
4052	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4053	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4054	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4055	fi
4056
4057	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4058	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4059	file_saved=true
4060
4061	elif [[ $archive_system = ut ]]
4062	then
4063	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4064	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4065	# GELEGT WERDEN
4066	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4067	chmod g+rx $tmp_data_catalog
4068	if [[ $files_for_pes = false ]]
4069	then
4070	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4071	else
4072	mkdir $tmp_data_catalog/${frelout[$i]}
4073	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4074	fi
4075
4076	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4077	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4078	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4079	if [[ $files_for_pes = false ]]
4080	then
4081	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4082	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4083	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4084	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4085	else
4086	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4087	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4088	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4089	fi
4090
4091	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4092	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4093	file_saved=true
4094
4095	else
4096	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4097	archive_save=false
4098	fi
4099	if [[ $file_saved = true ]]
4100	then
4101	if [[ $files_for_pes = false ]]
4102	then
4103	cat /dev/null > ${pathout[$i]}
4104	else
4105	mkdir -p ${pathout[$i]}
4106	fi
4107	fi
4108	fi
4109
4110	# APPEND AUF LOKALER MASCHINE
4111	if [[ "${actionout[$i]}" = "a" ]]
4112	then
4113	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4114	cat ${localout[$i]} >> ${pathout[$i]}
4115	fi
4116
4117	# KOPIEREN AUF LOKALER MASCHINE
4118	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4119	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4120	then
4121
4122	# KOPIEREN AUF EINPROZESSORMASCHINE
4123	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4124	then
4125	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4126	if [[ $link_local_output = true ]]
4127	then
4128	printf " using ln -f\n"
4129	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4130	fi
4131	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4132	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4133	then
4134	if [[ $link_local_output = true ]]
4135	then
4136	printf " ln failed, using cp...\n"
4137	fi
4138	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4139	fi
4140	else
4141	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4142	if [[ $link_local_output = true ]]
4143	then
4144	printf " using ln -f\n"
4145	ln -f ${localout[$i]} ${pathout[$i]}
4146	fi
4147	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4148	if [[ ! -f "${pathout[$i]}" ]]
4149	then
4150	if [[ $link_local_output = true ]]
4151	then
4152	printf " ln failed, using cp...\n"
4153	fi
4154	cp ${localout[$i]} ${pathout[$i]}
4155	fi
4156	fi
4157
4158	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4159	then
4160
4161	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4162	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4163	# WIRD DANN KOPIERT
4164	# PER MOVE UMBENANNT WERDEN
4165	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4166	if [[ $link_local_output = true ]]
4167	then
4168	printf " using ln -f\n"
4169	mkdir ${pathout[$i]}
4170	cd ${localout[$i]}
4171	for file in $(ls *)
4172	do
4173	ln -f $file ${pathout[$i]}
4174	done
4175	cd $TEMPDIR
4176	fi
4177	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4178	if [[ ! -f "${pathout[$i]}/_0000" ]]
4179	then
4180	if [[ $link_local_output = true ]]
4181	then
4182	printf " ln failed for .../_0000, using cp...\n"
4183	fi
4184	cp -r ${localout[$i]} ${pathout[$i]}
4185	fi
4186
4187	fi
4188	fi
4189	done
4190	if (( i != 0 ))
4191	then
4192	if [[ $transfer_problems = true ]]
4193	then
4194	printf "\n$striche\n *** OUTPUT-files saved"
4195	printf "\n +++ WARNING: some data transfers failed! \n"
4196	else
4197	printf "\n$striche\n *** all OUTPUT-files saved \n"
4198	fi
4199	fi
4200
4201
4202	# EVENTUELL FOLGEJOB STARTEN
4203	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4204	if [[ -f CONTINUE_RUN ]]
4205	then
4206
4207	if [[ $archive_save = true ]]
4208	then
4209
4210	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4211	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4212	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4213	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4214	# HANDEN
4215	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4216	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4217	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4218	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4219	then
4220	mc=`echo $mc \| sed 's/#/f/g'`
4221	fi
4222
4223
4224	# JOB STARTEN
4225	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4226	echo " $mc"
4227	printf "\n$striche\n"
4228	if [[ $localhost != $fromhost ]]
4229	then
4230
4231	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4232	then
4233	echo "*** ssh will be used to initiate restart-runs!"
4234	echo " return_addres=\"$return_addres\" "
4235	echo " return_username=\"$return_username\" "
4236	if [[ $return_addres = 172.20.25.41 ]]
4237	then
4238	# WORKAROUND AUF SCIROCCO AM TIT
4239	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4240	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4241	then
4242	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4243	else
4244	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4245	fi
4246	else
4247	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4248	locat=restart; exit
4249	fi
4250
4251	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4252	# DER AKTUELLE JOB ENDET
4253	if [[ $queue = special1q ]]
4254	then
4255	sleep 120
4256	else
4257	sleep 30
4258	fi
4259
4260	else
4261
4262	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4263	# RUFEN WERDEN, AUSSER AUF lcfimm
4264	cd $LOCAL_PWD
4265	if [[ $localhost = lcfimm ]]
4266	then
4267	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4268	else
4269	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4270	fi
4271	cd - > /dev/null
4272	fi
4273	printf "\n$striche\n *** restart-run initiated \n"
4274
4275
4276	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4277	# GEHOLT WORDEN SIND, LOESCHEN
4278	(( i = 0 ))
4279	while (( i < iin ))
4280	do
4281	(( i = i + 1 ))
4282	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4283	then
4284	rm -r $tmp_data_catalog/${frelin[$i]}
4285	fi
4286	done
4287
4288	else
4289
4290	printf "\n +++ no restart-run possible, since errors occured"
4291	printf "\n during the archive process"
4292	fi
4293
4294	fi
4295
4296
4297
4298	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4299	if [[ "$email_notification" != "none" ]]
4300	then
4301
4302	if [[ $localhost != $fromhost ]]
4303	then
4304	if [[ -f CONTINUE_RUN ]]
4305	then
4306	echo "PALM restart run necessary" > email_text
4307	echo "description header of actual run:" >> email_text
4308	cat CONTINUE_RUN >> email_text
4309	echo "mrun-command to restart:" >> email_text
4310	echo "$mc" >> email_text
4311	else
4312	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4313	fi
4314	mail $email_notification < email_text
4315	printf "\n *** email notification sent to \"$email_notification\" "
4316	fi
4317	fi
4318
4319
4320
4321	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4322	cd $HOME
4323	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4324
4325	else
4326
4327
4328	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4329	# CHENDE AKTIONEN DURCHGEFUEHRT
4330
4331	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4332	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4333	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4334	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4335	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4336	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4337	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4338	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4339	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4340	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4341	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4342	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4343	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4344	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4345	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4346	if [[ $use_openmp = true ]]
4347	then
4348	mrun_com=${mrun_com}" -O"
4349	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4350	else
4351	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4352	fi
4353	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4354	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4355	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4356	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4357	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4358	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4359	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4360	if [[ $do_remote = true ]]
4361	then
4362	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4363	fi
4364
4365
4366	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4367	jobfile=jobfile.$RANDOM
4368
4369
4370	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4371	echo "mkdir $TEMPDIR" >> $jobfile
4372	echo "cd $TEMPDIR" >> $jobfile
4373
4374
4375	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4376	if [[ $do_trace = true ]]
4377	then
4378	echo "set -x" >> $jobfile
4379	else
4380	echo "set +vx" >> $jobfile
4381	fi
4382
4383
4384	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4385	# DATEI FUER DEN JOB
4386	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4387	then
4388
4389	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4390	# KOPIEREN
4391	if [[ $restart_run != true ]]
4392	then
4393	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4394	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4395	fi
4396
4397	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4398	echo "set -x" >> $jobfile
4399	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4400	echo "export SOURCES_COMPLETE=true" >> $jobfile
4401
4402	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4403	# ARBEITSVERZEICHNIS VERSCHIEBEN
4404	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4405	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4406	echo "execute_mrun=true" >> $jobfile
4407	echo " " >> $jobfile
4408
4409	else
4410
4411	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4412	# SOWIE GEGEBENENFALLS DES MAKEFILES
4413	if [[ $do_compile = true ]]
4414	then
4415
4416	source_catalog=SOURCES_FOR_RUN_$fname
4417
4418	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4419	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4420	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4421	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4422	echo "export SOURCES_COMPLETE=true" >> $jobfile
4423	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4424
4425	for filename in $source_list
4426	do
4427	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4428	echo "cat > $filename << \"%END%\"" >> $jobfile
4429	cat $source_catalog/$filename >> $jobfile
4430	echo " " >> $jobfile
4431	echo "%END%" >> $jobfile
4432	echo " " >> $jobfile
4433	done
4434
4435	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4436	echo "cat > Makefile << \"%END%\"" >> $jobfile
4437	cat $source_catalog/Makefile >> $jobfile
4438	echo " " >> $jobfile
4439	echo "%END%" >> $jobfile
4440	echo " " >> $jobfile
4441
4442	echo "cd - > /dev/null" >> $jobfile
4443
4444	fi
4445
4446
4447	# ABSPEICHERN DER KONFIGURATIONSDATEI
4448	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4449	echo "cat > $config_file << \"%END%\"" >> $jobfile
4450	cat $config_file >> $jobfile
4451	echo "%END%" >> $jobfile
4452	echo " " >> $jobfile
4453
4454
4455	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4456	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4457	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4458	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4459	echo "%END%" >> $jobfile
4460	if [[ $host = lctit ]]
4461	then
4462	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4463	echo "mv mrun_new $mrun_script_name" >> $jobfile
4464	fi
4465	echo "chmod u+x $mrun_script_name" >> $jobfile
4466	echo "execute_mrun=true" >> $jobfile
4467	echo " " >> $jobfile
4468
4469	fi
4470
4471
4472	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4473	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4474	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4475	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4476	if [[ $do_remote = true ]]
4477	then
4478	(( i = 0 ))
4479	while (( i < iin ))
4480	do
4481	(( i = i + 1 ))
4482	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4483	if [[ "${transin[$i]}" = job ]]
4484	then
4485	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4486	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4487	echo " " >> $jobfile
4488	echo "%END%" >> $jobfile
4489	else
4490	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4491	fi
4492
4493	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4494	echo "if [[ \$? = 1 ]]" >> $jobfile
4495	echo "then" >> $jobfile
4496	echo " echo \" \" " >> $jobfile
4497	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4498	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4499	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4500	echo " execute_mrun=false" >> $jobfile
4501	echo "fi" >> $jobfile
4502	done
4503	fi
4504
4505	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4506	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4507	echo "LOCAL_PWD=$working_directory" >> $jobfile
4508	echo "export LOCAL_PWD" >> $jobfile
4509
4510	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4511	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4512	echo "export LOCAL_MRUN_PATH" >> $jobfile
4513
4514	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4515	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4516	then
4517	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4518	fi
4519
4520	# MRUN AUF ZIELRECHNER AUFRUFEN
4521	echo "set -x" >> $jobfile
4522	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4523
4524	echo 'ls -al; echo `pwd`' >> $jobfile
4525	echo "cd \$HOME" >> $jobfile
4526	echo "rm -rf $TEMPDIR" >> $jobfile
4527
4528
4529
4530
4531	# JOB PER SUBJOB STARTEN
4532	if [[ $silent = false ]]
4533	then
4534	printf "\n "
4535	else
4536	printf "\n\n"
4537	fi
4538
4539	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4540	rm -rf $jobfile
4541
4542
4543	fi # ENDE REMOTE-TEIL
4544
4545
4546
4547	# ENDE DER PROZEDUR

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source: palm/trunk/SCRIPTS/mrun @ 555

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