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source: palm/trunk/SCRIPTS/mrun @ 449

Last change on this file since 449 was 440, checked in by raasch, 15 years ago
lckyoto admitted for mrun and subjob
Property svn:keywords set to `Id Rev`
File size: 169.2 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 440 2010-02-01 11:55:04Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
189	# 25/08/09 - BjornM - adpated for lck
190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
193	# switches on archiving, archiving on SGI-ICE enabled
194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
195	# adjustment for special1q
196	# 18/12/09 - Carolin- modification of archiving (permq)
197	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
198
199
200
201	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
202
203	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
204	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
205	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
206
207	AddFilenames=""
208	additional_conditions=""
209	add_source_path=""
210	afname=""
211	archive_save=true
212	archive_system=none
213	compiler_name=""
214	cond1=""
215	cond2=""
216	config_file=.mrun.config
217	coupled_dist=""
218	coupled_mode="mpi1"
219	cpp_opts=""
220	cpp_options=""
221	cpumax=0
222	cpurest=0
223	delete_temporary_catalog=true
224	do_batch=false
225	do_compile=true
226	do_remote=false
227	do_stagein=true
228	do_stageout=true
229	do_trace=false
230	email_notification="none"
231	exclude=""
232	executable=""
233	execution_error=false
234	fimm=false
235	fname=test
236	fromhost=""
237	global_revision=""
238	group_number=none
239	host=""
240	host_file=""
241	hp=""
242	ignore_archive_error=false
243	input_list=""
244	interpreted_config_file=""
245	job_catalog="~/job_queue"
246	job_on_file=""
247	keep_data_from_previous_run=false
248	link_local_input=false
249	link_local_output=false
250	localhost_realname=$(hostname)
251	local_compile=false
252	local_dvrserver_running=.FALSE.
253	locat=normal
254	mainprog=""
255	makefile=""
256	mc=$0
257	while [[ $(echo $mc \| grep -c "/") != 0 ]]
258	do
259	mc=`echo $mc \| cut -f2- -d"/"`
260	done
261	module_files=""
262	mrun_script_name=$mc
263	netcdf_inc=""
264	netcdf_lib=""
265	netcdf_support=false
266	node_usage=default
267	numprocs=""
268	numprocs_atmos=0
269	numprocs_ocean=0
270	OOPT=""
271	openmp=false
272	output_list=""
273	package_list=""
274	punkte="..........................................................."
275	queue=none
276	read_from_config=""
277	restart_run=false
278	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
279	if [[ $return_addres = 130.75.105.158 ]]
280	then
281	return_addres=172.20.25.41
282	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
283	fi
284	return_password=""
285	return_username=$LOGNAME
286	remotecall=false
287	remote_username=""
288	run_coupled_model=false
289	run_mode=""
290	scirocco=false
291	store_on_archive_system=false
292	striche=" ----------------------------------------------------------------------------"
293	silent=false
294	source_list=""
295	source_path=SOURCE
296	tasks_per_node=""
297	threads_per_task=1
298	tmpcreate=false
299	tmp_data_catalog=""
300	transfer_problems=false
301	usern=$LOGNAME
302	use_openmp=false
303	working_directory=`pwd`
304	TOPT=""
305	XOPT=""
306	zeit=$( date \| cut -c 12-19 )
307
308	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
309	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
310
311	typeset -R30 calltime
312	typeset -L20 spalte1
313	typeset -L40 spalte2
314	typeset -L60 spalte3
315	typeset -L35 string1=`date`
316	typeset -L12 string2=$usern
317	typeset -L12 string3=$localhost_realname
318	typeset -L12 string4
319	typeset -L12 string5
320	typeset -L30 version="MRUN 2.0 Rev$Rev: 440 $"
321
322
323
324	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
325	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
326
327	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
328	# EXPORTIERT WERDEN
329	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
330	export group_number input_list memory numprocs output_list queue run_mode
331
332
333
334	# FEHLERBEHANDLUNG
335	# BEI EXIT:
336	trap 'rm -rf $working_directory/tmp_mrun
337	if [[ $locat != localhost ]]
338	then
339	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
340	# then
341	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
342	#MRUN-calls on $localhost
343	#
344	#date and time user localhost remotehost termination mrun-command
345	#--------------------------------------------------------------------------------------------------------------------
346	#%STATEND%
347	# chmod 666 ${mrun_path}/statistik/mrun_statistik
348	# fi
349	#
350	# # EINTRAG IN DIE STATISTIK-DATEI
351	# string4=$host
352	# string5=$locat
353	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
354	# then
355	# if [[ $do_batch = true ]]
356	# then
357	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
358	# else
359	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
360	# fi
361	# fi
362	echo " " > /dev/null
363	fi
364
365	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
366	then
367
368	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
369	(( i = 0 ))
370	while (( i < iec ))
371	do
372	(( i = i + 1 ))
373	printf "\n *** Execution of ERROR-command:\n"
374	printf " >>> ${err_command[$i]}\n"
375	eval ${err_command[$i]}
376	done
377	if [[ -n $interpreted_config_file ]] then
378	rm -rf $interpreted_config_file
379	fi
380	if [[ -n .mrun_environment ]] then
381	rm -rf .mrun_environment
382	fi
383	if [[ $tmpcreate = true ]]
384	then
385	printf "\n *** Contents of \"$TEMPDIR\":\n"
386	ls -al; cd
387	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
388	fi
389	if [[ "$dvrserver_id" != "" ]]
390	then
391	echo "+++ killing dvrserver_id=$dvrserver_id"
392	kill $dvrserver_id
393	fi
394	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
395	then
396	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
397	fi
398	printf "\n\n+++ MRUN killed \n\n"
399	elif [[ $locat != control_c ]]
400	then
401	printf "\n\n --> all actions finished\n\n"
402	printf " Bye, bye $usern !!\n\n"
403	fi' exit
404
405
406	# BEI TERMINAL-BREAK:
407	trap 'rm -rf $working_directory/tmp_mrun
408	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
409	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
410	then
411	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
412	fi
413	if [[ "$dvrserver_id" != "" ]]
414	then
415	echo "+++ killing dvrserver_id=$dvrserver_id"
416	kill $dvrserver_id
417	fi
418	printf "\n+++ MRUN killed by \"^C\" \n\n"
419	locat=control_c
420	exit
421	' 2
422
423
424	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
425	# BEEN SET
426	if [[ "$PALM_BIN" = "" ]]
427	then
428	printf "\n +++ environment variable PALM_BIN has not been set"
429	printf "\n please set it to the directory where the PALM scripts are located"
430	locat=palm_bin; exit
431	fi
432	export PATH=$PALM_BIN:$PATH
433
434
435
436	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
437	# FUER FOLGEJOBS BENOETIGT WIRD
438	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
439	do
440	case $option in
441	(a) afname=$OPTARG;;
442	(A) store_on_archive_system=true; mc="$mc -A";;
443	(b) do_batch=true; mc="$mc -b";;
444	(B) delete_temporary_catalog=false; mc="$mc -B";;
445	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
446	(C) restart_run=true; mc="$mc -C";;
447	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
448	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
449	(F) job_on_file="-D"; mc="$mc -F";;
450	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
451	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
452	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
453	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
454	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
455	(I) ignore_archive_error=true; mc="$mc -I";;
456	(k) keep_data_from_previous_run=true; mc="$mc -k";;
457	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
458	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
459	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
460	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
461	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
462	(O) use_openmp=true; mc="$mc -O";;
463	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
464	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
465	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
466	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
467	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
468	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
469	(S) read_from_config=false; mc="$mc -S";;
470	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
471	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
472	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
473	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
474	(v) silent=true; mc="$mc -v";;
475	(x) do_trace=true;set -x; mc="$mc -x";;
476	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
477	(y) ocean_file_appendix=true; mc="$mc -y";;
478	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
479	(\?) printf "\n +++ unknown option $OPTARG \n"
480	printf "\n --> type \"$0 ?\" for available options \n"
481	locat=parameter;exit;;
482	esac
483	done
484
485
486	# EVTL. POSITIONSPARAMETER EINLESEN
487	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
488	shift OPTIND-1
489
490
491	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
492	if [[ "$1" = "?" ]]
493	then
494	(printf "\n *** mrun can be called as follows:\n"
495	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
496	printf "\n Description of available options:\n"
497	printf "\n Option Description Default-Value"
498	printf "\n -a base name of input files equiv. -d"
499	printf "\n -A archiving when using file-attribute fl"
500	printf "\n -b batch-job on local machine ---"
501	printf "\n -B do not delete temporary directory at end ---"
502	printf "\n -c configuration file .mrun.config"
503	printf "\n -d base name of files attached to program test"
504	printf "\n -D preprocessor(cpp)-directives \"\" "
505	printf "\n -F create remote job file only ---"
506	printf "\n -h execution host $localhost_realname"
507	printf "\n -i INPUT control list \"\" "
508	printf "\n -I archiving errors of previous batch-jobs"
509	printf "\n will be ignored"
510	printf "\n -k keep data from previous run"
511	printf "\n -K additional conditions for controling"
512	printf "\n usage of conditional code and"
513	printf "\n env-variables in configuration file \"\" "
514	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
515	printf "\n -M Makefile name Makefile"
516	printf "\n -n node usage (shared/not_shared) depending on -h"
517	printf "\n -o OUTPUT control list \"\" "
518	printf "\n -O use OpenMP ---"
519	printf "\n -p software package list \"\" "
520	printf "\n -q queue \"$queue\" "
521	printf "\n -r run control list (combines -i -o) \"\" "
522	printf "\n -s filenames of routines to be compiled \"\" "
523	printf "\n must end with .f, .f90, .F, or .c !"
524	printf "\n use \"..\" for more than one file and wildcards"
525	printf "\n -s TEST compiles all files with w-permit"
526	printf "\n -S config file interpreted by shellscript ---"
527	printf "\n -t allowed cpu-time in seconds (batch) 0"
528	printf "\n -T tasks per node depending on -h"
529	printf "\n -u username on remote machine \"\" "
530	printf "\n -v no prompt for confirmation ---"
531	printf "\n -x tracing of mrun for debug purposes ---"
532	printf "\n -X # of processors (on parallel machines) 1"
533	printf "\n -y add appendix \"_O\" to all local output"
534	printf "\n files (ocean precursor runs followed by"
535	printf "\n coupled atmosphere-ocean runs) ---"
536	printf "\n -Y run coupled model, \"#1 #2\" with"
537	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
538	printf "\n "
539	printf "\n Possible values of positional parameter <modus>:"
540	printf "\n \"?\" - this outline \n\n") \| more
541	exit
542	elif [[ "$1" != "" ]]
543	then
544	printf "\n +++ positional parameter $1 unknown \n"
545	locat=parameter; exit
546	fi
547
548
549
550	# KURZE STARTMELDUNG
551	printf "\n*** $version "
552	printf "\n will be executed. Please wait ..."
553
554
555
556	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
557	if [[ ! -f $config_file ]]
558	then
559	printf "\n\n +++ configuration file: "
560	printf "\n $config_file"
561	printf "\n does not exist"
562	locat=connect; exit
563	fi
564
565
566	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
567	line=""
568	grep "%host_identifier" $config_file > tmp_mrun
569	while read line
570	do
571	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
572	then
573	HOSTNAME=`echo $line \| cut -d" " -s -f2`
574	host_identifier=`echo $line \| cut -d" " -s -f3`
575	if [[ $localhost_realname = $HOSTNAME ]]
576	then
577	localhost=$host_identifier
578	break
579	fi
580	fi
581	done < tmp_mrun
582
583	if [[ "$localhost" = "" ]]
584	then
585	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
586	printf "\n for local host \"$localhost_realname\"."
587	printf "\n Please add line"
588	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
589	printf "\n to the configuration file."
590	locat=localhost; exit
591	fi
592
593
594	# HOSTSPEZIFISCHE VARIABLEN SETZEN
595	case $localhost_realname in
596	(r1\|r2\|h01\|b01) archive_system=tivoli;;
597	(cs*) archive_system=ut;;
598	(fimm.bccs.uib.no) fimm=true;;
599	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
600	(scirocco) scirocco=true;;
601	esac
602
603
604
605	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
606	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
607	[[ "$afname" = "" ]] && afname=$fname
608
609
610	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
611	if [[ "$run_mode" != "" ]]
612	then
613	input_list="$input_list $run_mode"
614	output_list="$output_list $run_mode"
615	fi
616
617
618	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
619	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
620	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
621	# STARTET)
622	if [[ "$fromhost" = "" ]]
623	then
624	fromhost=$localhost
625	fi
626
627
628	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
629	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
630	then
631	source_list=TEST
632	local_compile=true
633	host=$localhost
634	fi
635
636
637	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
638	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
639	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
640	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
641	if [[ -n $host && "$host" != $localhost ]]
642	then
643	do_batch=true
644	do_remote=true
645	case $host in
646	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
647	(*) printf "\n"
648	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
649	printf "\n is not available"
650	locat=nqs; (( iec = 0 )); exit;;
651	esac
652	else
653	host=$localhost
654	fi
655
656
657	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
658	if [[ -n $additional_conditions ]]
659	then
660	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
661	cond1=`echo $additional_conditions \| cut -d" " -f1`
662	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
663	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
664	if [[ -n $dummy ]]
665	then
666	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
667	locat=options; exit
668	fi
669	fi
670
671
672	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
673	if [[ $run_coupled_model = true ]]
674	then
675
676	if [[ -n $coupled_dist ]]
677	then
678
679	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
680	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
681
682	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
683	then
684
685	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
686	printf "\n PEs (total) : $numprocs"
687	printf "\n PEs (atmosphere): $numprocs_atmos"
688	printf "\n PEs (ocean) : $numprocs_ocean"
689	locat=coupling; exit
690
691	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
692	# THIS SHOULD BE REMOVED IN FUTURE
693	elif (( $numprocs_ocean != $numprocs_atmos ))
694	then
695
696	printf "\n +++ currently only 1:1 topologies are supported"
697	printf "\n PEs (total) : $numprocs"
698	printf "\n PEs (atmosphere): $numprocs_atmos"
699	printf "\n PEs (ocean) : $numprocs_ocean"
700	(( numprocs_atmos = $numprocs / 2 ))
701	(( numprocs_ocean = $numprocs / 2 ))
702	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
703
704	fi
705
706	else
707
708	(( numprocs_ocean = $numprocs / 2 ))
709	(( numprocs_atmos = $numprocs / 2 ))
710
711	fi
712	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
713
714	# GET coupled_mode FROM THE CONFIG FILE
715	line=""
716	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
717	while read line
718	do
719	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
720	then
721	coupled_mode="mpi2"
722	fi
723	done < tmp_mrun
724
725	fi
726
727
728	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
729	# ARCHIVIERUNG FEHLGESCHLAGEN IST
730	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
731	then
732	if [[ $ignore_archive_error = false ]]
733	then
734	printf "\n +++ data archiving of previous run failed"
735	printf "\n see directory \~/job_queue on remote machine"
736	locat=archive; exit
737	else
738	printf "\n +++ warning: data archiving in a previous run failed"
739	printf "\n MRUN continues, trying to get backup copy"
740	fi
741	fi
742
743
744
745	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
746	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
747	if [[ "$read_from_config" = false ]]
748	then
749
750	[[ $silent = false ]] && printf "\n Reading the configuration file... "
751	while read zeile
752	do
753	[[ $silent = false ]] && printf "."
754
755
756	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
757	# ERSETZEN
758	eval zeile=\"$zeile\"
759
760
761	# INTERPRETATION DER ZEILE
762	if [[ "$(echo $zeile)" = "" ]]
763	then
764	# LEERZEILE, KEINE AKTION
765	continue
766
767	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
768	then
769
770	# ZEILE IST KOMMENTARZEILE
771	true
772
773	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
774	then
775
776	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
777	zeile=$(echo $zeile \| cut -c2-)
778	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
779	var=`echo $zeile \| cut -d" " -f1`
780	value=`echo $zeile \| cut -d" " -s -f2`
781	for_host=`echo $zeile \| cut -d" " -s -f3`
782	for_cond1=`echo $zeile \| cut -d" " -s -f4`
783	for_cond2=`echo $zeile \| cut -d" " -s -f5`
784
785	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
786	then
787
788	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
789	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
790	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
791
792
793	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
794	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
795	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
796	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
797	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
798	# KONFIGURATIONSDATEI
799	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
800	then
801	eval $var=\$value
802
803	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
804	if [[ $do_trace = true ]]
805	then
806	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
807	fi
808	fi
809
810	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
811	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
812	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
813	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
814	if [[ $var = host ]]
815	then
816	if [[ -n $host && "$host" != $localhost ]]
817	then
818	do_batch=true
819	do_remote=true
820	case $host in
821	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
822	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
823	printf "\n is not available"
824	locat=nqs; exit;;
825	esac
826	else
827	host=$localhost
828	fi
829	fi
830
831	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
832	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
833	# DEN PROGRAMMEN BENOETIGT WERDEN
834	export $var
835	fi
836
837
838
839
840	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
841	then
842
843	# ZEILE DEFINIERT ERROR-KOMMANDO
844	(( iec = iec + 1 ))
845	zeile=$(echo $zeile \| cut -c4-)
846	err_command[$iec]="$zeile"
847
848	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
849	then
850
851	# ZEILE DEFINIERT INPUT-KOMMANDO
852	(( iic = iic + 1 ))
853	zeile=$(echo $zeile \| cut -c4-)
854	in_command[$iic]="$zeile"
855
856	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
857	then
858
859	# ZEILE DEFINIERT OUTPUT-KOMMANDO
860	(( ioc = ioc + 1 ))
861	zeile=$(echo $zeile \| cut -c4-)
862	out_command[$ioc]="$zeile"
863
864	else
865
866	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
867	# s2a: in/out - Feld
868	# s2b: loc - Feld (optional)
869	# s2c: tr/ar - Feld (optional)
870	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
871	s1=`echo $zeile \| cut -d" " -f1`
872	s2=`echo $zeile \| cut -d" " -s -f2`
873	s2a=$(echo $s2 \| cut -d":" -f1)
874	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
875	then
876	s2b=""
877	s2c=""
878	else
879	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
880	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
881	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
882	fi
883	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
884	s3=`echo $zeile \| cut -d" " -f3`
885	s4=`echo $zeile \| cut -d" " -s -f4`
886	s5=`echo $zeile \| cut -d" " -s -f5`
887	s6=`echo $zeile \| cut -d" " -s -f6`
888
889
890	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
891	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
892	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
893	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
894	# HANDEN SEIN MUSS (D.H. s2b = loc)
895	IFSALT="$IFS"; IFS="$IFS:"
896	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
897	then
898	found=false
899	for actual in $input_list
900	do
901	for formal in $s3
902	do
903	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
904	done
905	done
906	if [[ $found = true ]]
907	then
908	(( iin = iin + 1 ))
909	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
910	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
911	extin[$iin]=$s6
912	fi
913	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
914	then
915	found=false
916	for actual in $output_list
917	do
918	for formal in $s3
919	do
920	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
921	done
922	done
923	if [[ $found = true ]]
924	then
925	(( iout = iout + 1 ))
926	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
927	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
928	fi
929	elif [[ "$s2a" != in && "$s2a" != out ]]
930	then
931	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
932	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
933	locat=connect; exit
934	fi
935	IFS="$IFSALT"
936	fi
937	done < $config_file
938
939	else
940
941
942	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
943	[[ $silent = false ]] && printf "..."
944	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
945	export interpreted_config_file=.icf.$RANDOM
946
947
948
949	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
950	# VERFUEGUNG STELLEN
951	cat > .mrun_environment << %%END%%
952	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
953	config_file = '$config_file', do_remote = '$do_remote',
954	do_trace = '$do_trace', host = '$host',
955	input_list = '$input_list', icf = '$interpreted_config_file',
956	localhost = '$localhost', output_list = '$output_list' /
957
958	%%END%%
959
960	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
961	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
962	mrun_memory=$memory
963	mrun_group_number=$group_number
964	mrun_cpumax=$cpumax
965	mrun_numprocs=$numprocs
966
967	if [[ $localhost_realname = "sx-fep" ]]
968	then
969	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
970	else
971	interpret_config.x
972	fi
973	rm .mrun_environment
974
975
976	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
977	chmod u+x $interpreted_config_file
978	export PATH=$PATH:.
979	. $interpreted_config_file
980	rm $interpreted_config_file
981
982
983	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
984	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
985	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
986	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
987	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
988
989	fi
990
991
992	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
993	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
994	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
995	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
996	if [[ "$SOURCES_COMPLETE" = "" ]]
997	then
998
999	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1000	# VEREINBART WURDE
1001	source_path=""
1002	line=""
1003	grep "%source_path" $config_file > tmp_mrun
1004	while read line
1005	do
1006	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1007	then
1008	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1009	then
1010	global_source_path=`echo $line \| cut -d" " -f2`
1011	fi
1012	fi
1013	done < tmp_mrun
1014
1015	line=""
1016	found=false
1017	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1018	while read line
1019	do
1020	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1021	then
1022	if [[ $found = true ]]
1023	then
1024	printf "\n\n +++ more than one source path found in configuration file"
1025	printf "\n for local host \"$localhost\" "
1026	locat=source_path; exit
1027	fi
1028	source_path=`echo $line \| cut -d" " -f2`
1029	found=true
1030	fi
1031	done < tmp_mrun
1032	rm tmp_mrun
1033
1034	if [[ "$source_path" = "" ]]
1035	then
1036	if [[ "$global_source_path" != "" ]]
1037	then
1038	source_path=$global_source_path
1039	else
1040	printf "\n\n +++ no source path found in configuration file"
1041	printf "\n for local host \"$localhost\" "
1042	locat=source_path; exit
1043	fi
1044	fi
1045	eval source_path=$source_path
1046
1047	if [[ ! -d $source_path ]]
1048	then
1049	printf "\n\n +++ source path \"$source_path\" on local host"
1050	printf "\n \"$localhost\" does not exist"
1051	locat=source_path; exit
1052	fi
1053
1054	fi
1055
1056
1057	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1058	# DURCH OPTION -G MITGETEILT)
1059	if [[ "$global_revision" = "" ]]
1060	then
1061	global_revision=`svnversion $source_path 2>/dev/null`
1062	global_revision="Rev: $global_revision"
1063	fi
1064
1065
1066	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1067	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1068	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1069	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1070	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1071	if [[ -n $host && "$host" != $localhost ]]
1072	then
1073	do_batch=true
1074	do_remote=true
1075	case $host in
1076	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1077	(*) printf "\n"
1078	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1079	printf "\n is not available"
1080	locat=nqs; (( iec = 0 )); exit;;
1081	esac
1082	else
1083	host=$localhost
1084	fi
1085
1086
1087	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1088	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1089	then
1090
1091	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1092	if [[ ! -n $numprocs ]]
1093	then
1094	printf "\n"
1095	printf "\n +++ option \"-K parallel\" requires additional specification"
1096	printf "\n of the number of processors to be used by"
1097	printf "\n mrun-option \"-X\" or by environment-variable"
1098	printf "\n \"numprocs\" in the configuration file"
1099	locat=numprocs; (( iec = 0 )); exit
1100	fi
1101
1102	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1103	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1104	# GESAMTPROZESSORANZAHL IST
1105	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1106	then
1107	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1108	(( ival = $tasks_per_node ))
1109	(( pes = numprocs ))
1110	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1111	# then
1112	# (( pes = pes - 1 ))
1113	# fi
1114	(( ii = pes / ival ))
1115	if (( pes - ii * ival > 0 ))
1116	then
1117	printf "\n"
1118	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1119	printf "\n divisor of the total number of processors (option \"-X\")"
1120	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1121	locat=tasks_per_node; (( iec = 0 )); exit
1122	fi
1123	fi
1124
1125	# IBMY HAT NUR EINEN KNOTEN
1126	if [[ $host = ibmy ]]
1127	then
1128	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1129	then
1130	printf "\n"
1131	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1132	printf "\n total number of processors (option \"-X\")"
1133	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1134	locat=tasks_per_node; (( iec = 0 )); exit
1135	fi
1136	fi
1137
1138	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1139	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1140	if [[ $use_openmp = true ]]
1141	then
1142	threads_per_task=$tasks_per_node
1143	tasks_per_node=1
1144	fi
1145
1146	# SETTINGS FOR SUBJOB-COMMAND
1147	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1148	then
1149	(( tp1 = tasks_per_node * threads_per_task ))
1150	TOPT="-T $tp1"
1151	else
1152	TOPT="-T $tasks_per_node"
1153	fi
1154	OOPT="-O $threads_per_task"
1155
1156	# GESAMTZAHL DER KNOTEN BESTIMMEN
1157	if [[ "$tasks_per_node" != "" ]]
1158	then
1159	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1160	fi
1161
1162	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1163	# SETZEN
1164	if [[ $node_usage = default ]]
1165	then
1166	if [[ $host = ibms ]]
1167	then
1168	node_usage=shared
1169	elif [[ $host = lctit ]]
1170	then
1171	node_usage=RAM64GB
1172	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1173	then
1174	node_usage=singlejob
1175	else
1176	node_usage=not_shared
1177	fi
1178	fi
1179
1180	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1181	then
1182	printf "\n"
1183	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1184	printf "\n \"shared\" or \"not_shared\""
1185	locat=tasks_per_node; (( iec = 0 )); exit
1186	fi
1187
1188	fi
1189
1190	# PRUEFEN, OB HOSTFILE EXISTIERT
1191	if [[ -n $hostfile ]]
1192	then
1193	if [[ ! -f $hostfile ]]
1194	then
1195	printf "\n"
1196	printf "\n +++ hostfile \"$hostfile\" does not exist"
1197	locat=hostfile; exit
1198	fi
1199	fi
1200
1201	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1202	if [[ $host = ibmy && $do_remote = false ]]
1203	then
1204	if [[ ! -f $HOME/.rhosts ]]
1205	then
1206	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1207	printf "\n\n *** file:"
1208	printf "\n $HOME/.rhosts"
1209	printf "\n was created\n"
1210	fi
1211	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1212	then
1213	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1214	printf "\n\n *** file:"
1215	printf "\n $HOME/.rhosts"
1216	printf "\n was extended by the name of the current host\n"
1217	fi
1218	fi
1219
1220
1221
1222	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1223	if [[ $queue = none ]]
1224	then
1225	case $host in
1226	(ibmb) if [[ $node_usage = shared ]]
1227	then
1228	queue=cshare
1229	else
1230	queue=csolo
1231	fi;;
1232	(ibmh) queue=no_class;;
1233	(ibmy) queue=parallel;;
1234	(lckyoto) queue=ph;;
1235	(lcsgib) queue=bigq;;
1236	(lcsgih) queue=bigq;;
1237	(lctit) queue=RAM64GB;;
1238	(nech) queue=none;;
1239	(necriam) queue=SP;;
1240	(unics) queue=unics;;
1241	esac
1242	fi
1243
1244
1245	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1246	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1247	# ERMITTELN
1248	(( i = 0 ))
1249	while (( i < iin ))
1250	do
1251	(( i = i + 1 ))
1252	(( maxcycle = 0 ))
1253
1254	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1255	if [[ "${actionin[$i]}" = di ]]
1256	then
1257	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1258	# REM-MASCHINE AUSWERTEN
1259	eval filename=${pathin[$i]}/${endin[$i]}
1260	else
1261	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1262	# REM-MASCHINE AUSWERTEN
1263	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1264	fi
1265
1266	# PRUEFEN AUF VORHANDENSEIN
1267	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1268	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1269	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1270	then
1271	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1272	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1273	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1274	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1275	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1276	if [[ "${transin[$i]}" != "locopt" ]]
1277	then
1278	printf "\n\n +++ INPUT-file: "
1279	if [[ "${extin[$i]}" = "" ]]
1280	then
1281	printf "\n $filename"
1282	else
1283	printf "\n $filename.${extin[$i]}"
1284	fi
1285	printf "\n does not exist\n"
1286	locat=input; exit
1287	else
1288	transin[$i]="unavailable"
1289	fi
1290	else
1291
1292	# ZYKLUSNUMMER FESTSTELLEN
1293	ls -1 -d $filename > filelist 2>/dev/null
1294	ls -1 -d $filename.* >> filelist 2>/dev/null
1295	while read zeile
1296	do
1297	cycle=$(print $zeile \| cut -f2 -d".")
1298	if [[ "$cycle" = "$zeile" ]]
1299	then
1300	(( icycle = 0 ))
1301	elif [[ "$cycle" = "${extin[$i]}" ]]
1302	then
1303	(( icycle = 0 ))
1304	else
1305	(( icycle = $cycle ))
1306	fi
1307	if (( icycle > maxcycle ))
1308	then
1309	(( maxcycle = icycle ))
1310	file_to_be_used=$zeile
1311	fi
1312	done <filelist
1313	rm filelist
1314
1315	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1316	if (( maxcycle > 0 ))
1317	then
1318	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1319	then
1320	filename=${filename}.$maxcycle.${extin[$i]}
1321	else
1322	filename=${filename}.$maxcycle
1323	fi
1324	else
1325	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1326	then
1327	filename=${filename}.${extin[$i]}
1328	fi
1329	fi
1330
1331	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1332	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1333	absnamein[$i]=$filename
1334	if (( maxcycle > 0 ))
1335	then
1336	if [[ "${actionin[$i]}" = di ]]
1337	then
1338	frelin[$i]=${endin[$i]}.$maxcycle
1339	else
1340	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1341	fi
1342	else
1343	if [[ "${actionin[$i]}" = di ]]
1344	then
1345	frelin[$i]=${endin[$i]}
1346	else
1347	frelin[$i]=${afname}${endin[$i]}
1348	fi
1349	fi
1350
1351	fi
1352	done
1353
1354
1355	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1356	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1357	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1358	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1359	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1360	(( i = 0 ))
1361	while (( i < iout ))
1362	do
1363	(( i = i + 1 ))
1364	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1365	then
1366	if [[ "${actionout[$i]}" = tr ]]
1367	then
1368	actionout[$i]=""
1369	elif [[ "${actionout[$i]}" = trpe ]]
1370	then
1371	actionout[$i]=pe
1372	elif [[ "${actionout[$i]}" = tra ]]
1373	then
1374	actionout[$i]=a
1375	fi
1376	(( maxcycle = 0 ))
1377	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1378	eval catalogname=${pathout[$i]}
1379	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1380	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1381	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1382	then
1383
1384	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1385	if cat /dev/null > $filename
1386	then
1387	rm $filename
1388	else
1389
1390	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1391	if [[ ! -d $catalogname ]]
1392	then
1393	if mkdir -p $catalogname
1394	then
1395	printf "\n\n *** directory:"
1396	printf "\n $catalogname"
1397	printf "\n was created\n"
1398	else
1399	printf "\n\n +++ OUTPUT-file:"
1400	printf "\n $filename"
1401	printf "\n cannot be created, because directory does not exist"
1402	printf "\n and cannot be created either"
1403	printf "\n"
1404	locat=output ; exit
1405	fi 2>/dev/null
1406	else
1407	printf "\n\n +++ OUTPUT-file:"
1408	printf "\n $filename"
1409	printf "\n cannot be created, although directory exists"
1410	printf "\n"
1411	locat=output ; exit
1412	fi
1413	fi 2>/dev/null
1414	else
1415
1416	# ZYKLUSNUMMER FESTSTELLEN
1417	ls -1 -d $filename > filelist 2>/dev/null
1418	ls -1 -d $filename.* >> filelist 2>/dev/null
1419	while read zeile
1420	do
1421	cycle=$(print $zeile \| cut -f2 -d".")
1422	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1423	then
1424	(( icycle = 1 ))
1425	else
1426	(( icycle = $cycle + 1 ))
1427	fi
1428	if (( icycle > maxcycle ))
1429	then
1430	(( maxcycle = icycle ))
1431	fi
1432	done <filelist
1433	rm filelist
1434	fi
1435
1436	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1437	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1438	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1439	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1440	if [[ "${actionout[$i]}" != a ]]
1441	then
1442	if (( maxcycle > 0 ))
1443	then
1444	filename=${filename}.$maxcycle
1445	if cat /dev/null > $filename
1446	then
1447	rm $filename
1448	else
1449	printf "\n +++ OUTPUT-file:"
1450	printf "\n $filename"
1451	printf "\n cannot be created"
1452	locat=output ; exit
1453	fi
1454	fi
1455	else
1456	(( maxcycle = maxcycle - 1 ))
1457	if (( maxcycle > 0 ))
1458	then
1459	filename=${filename}.$maxcycle
1460	fi
1461	fi
1462
1463	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1464	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1465	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1466	pathout[$i]=$filename
1467	if (( maxcycle > 0 ))
1468	then
1469	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1470	else
1471	frelout[$i]=${fname}${endout[$i]}
1472	fi
1473
1474	fi
1475	done
1476
1477
1478	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1479	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1480	then
1481	if [[ "$dvr_inc" = "" ]]
1482	then
1483	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1484	printf "\n This is required for the dvrp_graphics package.\n"
1485	locat=dvr; exit
1486	fi
1487	if [[ "$dvr_lib" = "" ]]
1488	then
1489	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1490	printf "\n This is required for the dvrp_graphics package.\n"
1491	locat=dvr; exit
1492	fi
1493	fi
1494
1495
1496	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1497	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1498	# UEBERSETZT ZU WERDEN)
1499	if [[ "$mainprog" = "" && "$executable" = "" ]]
1500	then
1501	printf "\n +++ neither main program nor executable defined"
1502	locat=source; exit
1503	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1504	then
1505	printf "\n +++ main program as well as executable defined"
1506	locat=source; exit
1507	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1508	then
1509	do_compile=false
1510	fi
1511
1512
1513	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1514	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1515	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1516	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1517	then
1518	rm -rf SOURCES_FOR_RUN_$fname
1519	mkdir SOURCES_FOR_RUN_$fname
1520	fi
1521
1522
1523	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1524	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1525	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1526	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1527	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1528	then
1529
1530	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1531	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1532
1533
1534	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1535	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1536	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1537	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1538	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1539	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1540	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1541	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1542	# GESAMMELT
1543	if [[ "$source_list" = WRITE_PERMIT ]]
1544	then
1545
1546	source_list=""
1547	cd $source_path
1548
1549
1550	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1551	Names=$(ls -1 *.f90 2>&1)
1552	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1553	Names=$(ls -1 *.F90 2>&1)
1554	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1555	Names=$(ls -1 *.F 2>&1)
1556	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1557	Names=$(ls -1 *.f 2>&1)
1558	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1559	Names=$(ls -1 *.c 2>&1)
1560	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1561
1562
1563	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1564	for dateiname in $Filenames
1565	do
1566	if [[ -w $dateiname ]]
1567	then
1568	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1569	then
1570	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1571	source_list=$source_list"$dateiname "
1572	fi
1573	fi
1574	done
1575
1576	cd - > /dev/null
1577
1578
1579	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1580	then
1581
1582	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1583	source_list=""
1584	cd $source_path
1585
1586
1587	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1588	if [[ ! -d .svn ]]
1589	then
1590	printf "\n\n +++ source directory"
1591	printf "\n \"$source_path\" "
1592	printf "\n is not under control of \"subversion\"."
1593	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1594	fi
1595
1596
1597	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1598	Filenames=""
1599	svn status > tmp_mrun
1600	while read line
1601	do
1602	firstc=`echo $line \| cut -c1`
1603	if [[ $firstc = M \|\| $firstc = "?" ]]
1604	then
1605	Name=`echo "$line" \| cut -c8-`
1606	extension=`echo $Name \| cut -d. -f2`
1607	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1608	then
1609	Filenames="$Filenames "$Name
1610	fi
1611	fi
1612	done < tmp_mrun
1613
1614
1615	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1616	for dateiname in $Filenames
1617	do
1618	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1619	source_list=$source_list"$dateiname "
1620	done
1621
1622	cd - > /dev/null
1623
1624
1625	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1626	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1627	# VORHANDEN
1628	elif [[ "$source_list" != "" && $restart_run != true ]]
1629	then
1630
1631	cd $source_path
1632
1633	for filename in $source_list
1634	do
1635
1636	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1637	if [[ $(print $filename \| grep -c "/") != 0 ]]
1638	then
1639	printf "\n +++ source code file: $filename"
1640	printf "\n must not contain (\"/\") "
1641	locat=source; exit
1642	fi
1643
1644	if [[ ! -f $filename ]]
1645	then
1646	printf "\n +++ source code file: $filename"
1647	printf "\n does not exist"
1648	locat=source; exit
1649	else
1650	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1651	fi
1652
1653	done
1654
1655	cd - > /dev/null
1656
1657	fi
1658
1659
1660	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1661	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1662	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1663	if [[ $restart_run != true ]]
1664	then
1665
1666	if [[ ! -f "$source_path/$mainprog" ]]
1667	then
1668	printf "\n\n +++ main program: $mainprog"
1669	printf "\n does not exist in source directory"
1670	printf "\n \"$source_path\"\n"
1671	locat=source; exit
1672	else
1673	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1674	then
1675	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1676	source_list=${mainprog}" $source_list"
1677	fi
1678	fi
1679	fi
1680
1681
1682	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1683	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1684	if [[ "$restart_run" != true ]]
1685	then
1686	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1687	if [[ ! -f $makefile ]]
1688	then
1689	printf "\n +++ file \"$makefile\" does not exist"
1690	locat=make; exit
1691	else
1692	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1693	fi
1694	fi
1695
1696
1697	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1698	if [[ $restart_run != true && "$add_source_path" != "" ]]
1699	then
1700
1701	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1702	if [[ ! -d $add_source_path ]]
1703	then
1704	printf "\n\n +++ WARNING: additional source code directory"
1705	printf "\n \"$add_source_path\" "
1706	printf "\n does not exist or is not a directory."
1707	printf "\n No source code will be used from this directory!\n"
1708	add_source_path=""
1709	sleep 3
1710	else
1711
1712	cd $add_source_path
1713	found=false
1714
1715	Names=$(ls -1 *.f90 2>&1)
1716	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1717	Names=$(ls -1 *.F90 2>&1)
1718	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1719	Names=$(ls -1 *.F 2>&1)
1720	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1721	Names=$(ls -1 *.f 2>&1)
1722	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1723	Names=$(ls -1 *.c 2>&1)
1724	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1725
1726	cd - > /dev/null
1727	cd SOURCES_FOR_RUN_$fname
1728
1729	# COPY MAKEFILE IF EXISTING
1730	if [[ -f $add_source_path/Makefile ]]
1731	then
1732	printf "\n\n *** user Makefile from directory"
1733	printf "\n \"$add_source_path\" is used \n"
1734	sleep 1
1735	cp $add_source_path/Makefile .
1736	fi
1737
1738	for dateiname in $AddFilenames
1739	do
1740	if [[ -f $dateiname ]]
1741	then
1742	printf "\n +++ source code file \"$dateiname\" found in additional"
1743	printf "\n source code directory \"$add_source_path\" "
1744	printf "\n but was also given with option \"-s\" which means that it should be taken"
1745	printf "\n from directory \"$source_path\"."
1746	locat=source; exit
1747	fi
1748
1749	cp $add_source_path/$dateiname .
1750	source_list="$source_list $dateiname"
1751
1752	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1753	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1754	then
1755	printf "\n\n +++ user file \"$dateiname\" "
1756	printf "\n is not listed in Makefile \n"
1757	locat=source; exit
1758	else
1759
1760	# Default User-Interface von der Liste entfernen, falls Datei
1761	# ein User-Interface enthaelt
1762	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1763	# then
1764	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1765	# then
1766	# rm -rf user_interface.f90
1767	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1768	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1769	# printf "\n since a user-interface is found in file"
1770	# printf "\n \"$add_source_path/$dateiname\" \n"
1771	# sleep 3
1772	# else
1773	if [[ $found = false ]]
1774	then
1775	found=true
1776	printf "\n\n *** following user file(s) added to the"
1777	printf " files to be translated:\n "
1778	fi
1779	printf "$dateiname "
1780	sleep 0.5
1781	fi
1782	done
1783	[[ $found = true ]] && printf "\n"
1784	cd - > /dev/null
1785	fi
1786	fi
1787
1788
1789	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1790	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1791	if [[ $restart_run != true && -n $package_list ]]
1792	then
1793
1794	cd $source_path
1795
1796	for package in $package_list
1797	do
1798
1799	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1800
1801	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1802	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1803	# LIEFERT
1804	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1805
1806
1807	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1808	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1809	for source_list_name in $package_source_list
1810	do
1811	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1812	then
1813
1814	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1815	ending=`echo $source_list_name \| cut -f2 -d.`
1816	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1817	then
1818	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1819	source_list="$source_list $source_list_name"
1820	fi
1821	fi
1822	done
1823	done
1824
1825	cd - > /dev/null
1826	fi
1827
1828
1829	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1830	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1831	# if [[ "$restart_run" != true ]]
1832	# then
1833	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1834	# if [[ ! -f $makefile ]]
1835	# then
1836	# printf "\n +++ file \"$makefile\" does not exist"
1837	# locat=make; exit
1838	# else
1839	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1840	# fi
1841	# fi
1842
1843	fi # do_compile=true
1844
1845
1846	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1847	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1848	if [[ $do_compile = true ]]
1849	then
1850
1851	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1852	# ZUSAMMENSETZEN
1853	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1854	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1855	then
1856	cpp_options="${cpp_options},-D__ibm=__ibm"
1857	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1858	then
1859	cpp_options="$cpp_options -D__nec"
1860	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1861	then
1862	cpp_options="$cpp_options -D__lc"
1863	else
1864	cpp_options="$cpp_options -D__$localhost"
1865	fi
1866
1867	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1868	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1869	then
1870	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1871	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1872	else
1873	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1874	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1875	fi
1876
1877	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1878	if [[ -n $package_list ]]
1879	then
1880	for package in $package_list
1881	do
1882	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1883	then
1884	if [[ $package != "dvrp_graphics+1PE" ]]
1885	then
1886	cpp_options="${cpp_options},-D__$package=__$package"
1887	else
1888	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1889	export use_seperate_pe_for_dvrp_output=true
1890	fi
1891	else
1892	if [[ $package != "dvrp_graphics+1PE" ]]
1893	then
1894	cpp_options="$cpp_options -D__$package"
1895	else
1896	cpp_options="$cpp_options -D__dvrp_graphics"
1897	export use_seperate_pe_for_dvrp_output=true
1898	fi
1899	fi
1900	done
1901	fi
1902
1903	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1904	if [[ -n $cpp_opts ]]
1905	then
1906	for popts in $cpp_opts
1907	do
1908	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1909	then
1910	cpp_options="${cpp_options},-D__$popts=__$popts"
1911	else
1912	cpp_options="$cpp_options -D__$popts"
1913	fi
1914	done
1915	fi
1916
1917	else
1918
1919
1920	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1921	if [[ $do_remote = false ]]
1922	then
1923	if [[ ! -f $executable ]]
1924	then
1925	printf "\n +++ executable file: $executable"
1926	printf "\n does not exist"
1927	locat=executable; exit
1928	fi
1929	fi
1930	fi
1931
1932
1933	# JOBMODUS FESTSTELLEN
1934	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1935	then
1936	jobmo=BATCH
1937	else
1938	jobmo=INTERACTIVE
1939	fi
1940
1941
1942	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1943	# DURCH BENUTZER ANDERWEITIG VEREINBART
1944	if [[ "$compiler_name" = "" ]]
1945	then
1946
1947	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1948	locat=compiler_name; exit
1949
1950	fi
1951
1952
1953	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1954	[[ $localhost = necriam ]] && compiler_name=mpif90
1955
1956
1957
1958	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1959	kennung=$RANDOM
1960	if [[ "$tmp_user_catalog" = "" ]]
1961	then
1962	if [[ $localhost = ibmh ]]
1963	then
1964	tmp_user_catalog=$SCRATCH
1965	elif [[ $localhost = nech ]]
1966	then
1967	tmp_user_catalog=$WRKSHR
1968	else
1969	tmp_user_catalog=/tmp
1970	fi
1971	fi
1972	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1973
1974
1975	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1976	# BESTIMMEN
1977	if [[ "$tmp_data_catalog" = "" ]]
1978	then
1979	if [[ $localhost = ibmb ]]
1980	then
1981	tmp_data_catalog=$WORK/mrun_restart_data
1982	elif [[ $localhost = nech ]]
1983	then
1984	tmp_data_catalog=$WRKSHR/mrun_restart_data
1985	else
1986	tmp_data_catalog=/tmp/mrun_restart_data
1987	fi
1988	fi
1989
1990
1991	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1992	# ERSETZEN
1993	if [[ $do_remote = false && $do_compile = true ]]
1994	then
1995	eval fopts=\"$fopts\"
1996	eval lopts=\"$lopts\"
1997	fi
1998
1999
2000
2001	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2002	fopts="$fopts $netcdf_inc $dvr_inc"
2003	lopts="$lopts $netcdf_lib $dvr_lib"
2004	ROPTS="$ropts"
2005	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2006	then
2007	XOPT="-X $numprocs"
2008	fi
2009
2010
2011
2012	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2013	# GRAMM BENOETIGT
2014	done=false
2015	while [[ $done = false ]]
2016	do
2017	cputime=$cpumax
2018	if (( $cputime == 0 ))
2019	then
2020	if [[ $do_batch = true ]]
2021	then
2022	printf "\n +++ cpu-time is undefined"
2023	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2024	printf "\n >>> "
2025	read cputime 1>/dev/null 2>&1
2026	else
2027	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2028	fi
2029	else
2030	done=true
2031	fi
2032	cpumax=$cputime
2033	done
2034
2035	(( minuten = cputime / 60 ))
2036	(( sekunden = cputime - minuten * 60 ))
2037
2038
2039	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2040	if [[ $do_batch = true ]]
2041	then
2042	done=false
2043	while [[ $done = false ]]
2044	do
2045	if (( memory == 0 ))
2046	then
2047	printf "\n +++ memory demand is undefined"
2048	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2049	printf "\n >>> "
2050	read memory 1>/dev/null 2>&1
2051	else
2052	done=true
2053	fi
2054	done
2055	fi
2056
2057
2058	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2059	if [[ $do_remote = true && -z $remote_username ]]
2060	then
2061	while [[ -z $remote_username ]]
2062	do
2063	printf "\n +++ username on remote host \"$host\" is undefined"
2064	printf "\n >>> Please type username:"
2065	printf "\n >>> "
2066	read remote_username
2067	done
2068	mc="$mc -u$remote_username"
2069	fi
2070
2071
2072	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2073	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2074	then
2075	[[ "$mpilib" = "" ]] && export mpilib=mpt
2076	fi
2077
2078
2079
2080	###########################################################################
2081	# HEADER-AUSGABE
2082	###########################################################################
2083
2084
2085	calltime=$(date)
2086	printf "\n"
2087	# [[ $silent = false ]] && clear
2088	printf "#--------------------------------------------------------------# \n"
2089	printf "\| $version$calltime \| \n"
2090	printf "\| \| \n"
2091	spalte1="called on:"; spalte2=$localhost_realname
2092	printf "\| $spalte1$spalte2 \| \n"
2093	if [[ $local_compile = false ]]
2094	then
2095	if [[ $do_remote = true ]]
2096	then
2097	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2098	else
2099	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2100	fi
2101	else
2102	spalte1="compiling test only!"; spalte2=""
2103	fi
2104	printf "\| $spalte1$spalte2 \| \n"
2105	if [[ -n $numprocs ]]
2106	then
2107	spalte1="number of PEs:"; spalte2=$numprocs
2108	printf "\| $spalte1$spalte2 \| \n"
2109	fi
2110	if [[ -n $tasks_per_node ]]
2111	then
2112	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2113	printf "\| $spalte1$spalte2 \| \n"
2114	fi
2115	if [[ $threads_per_task != 1 ]]
2116	then
2117	spalte1="threads per task:"; spalte2="$threads_per_task"
2118	printf "\| $spalte1$spalte2 \| \n"
2119	fi
2120	printf "\| \| \n"
2121	if [[ $do_compile = true ]]
2122	then
2123	spalte1=cpp-directives:; spalte2=$cpp_options
2124	printf "\| $spalte1$spalte2 \| \n"
2125	zeile=$(echo "$cpp_options" \| cut -c41-)
2126	while [[ "$zeile" != "" ]]
2127	do
2128	spalte1=""
2129	spalte2=$zeile
2130	printf "\| $spalte1$spalte2 \| \n"
2131	zeile=$(echo "$zeile" \| cut -c41-)
2132	done
2133
2134	spalte1=compiler-options:; spalte2="$fopts"
2135	printf "\| $spalte1$spalte2 \| \n"
2136	zeile=$(echo "$fopts" \| cut -c41-)
2137	while [[ "$zeile" != "" ]]
2138	do
2139	spalte1=""
2140	spalte2=$zeile
2141	printf "\| $spalte1$spalte2 \| \n"
2142	zeile=$(echo "$zeile" \| cut -c41-)
2143	done
2144
2145	spalte1=linker-options:; spalte2=$lopts
2146	printf "\| $spalte1$spalte2 \| \n"
2147	zeile=$(echo "$lopts" \| cut -c41-)
2148	while [[ "$zeile" != "" ]]
2149	do
2150	spalte1=""
2151	spalte2=$zeile
2152	printf "\| $spalte1$spalte2 \| \n"
2153	zeile=$(echo "$zeile" \| cut -c41-)
2154	done
2155
2156	spalte1="main program":; spalte2=$mainprog
2157	printf "\| $spalte1$spalte2 \| \n"
2158	else
2159	spalte1=executable:; spalte2=$executable
2160	printf "\| $spalte1$spalte2 \| \n"
2161	fi
2162	printf "\| \| \n"
2163	spalte1="base name of files":; spalte2=$fname
2164	printf "\| $spalte1$spalte2 \| \n"
2165	if [[ $fname != $afname ]]
2166	then
2167	spalte1="base name of input files":; spalte2=$afname
2168	printf "\| $spalte1$spalte2 \| \n"
2169	fi
2170	spalte1="INPUT control list":; spalte2=$input_list
2171	printf "\| $spalte1$spalte2 \| \n"
2172	spalte1="OUTPUT control list":; spalte2=$output_list
2173	printf "\| $spalte1$spalte2 \| \n"
2174
2175	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2176	then
2177	spalte1="memory demand / PE":; spalte2="$memory MB"
2178	printf "\| $spalte1$spalte2 \| \n"
2179	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2180	printf "\| $spalte1$spalte2 \| \n"
2181	fi
2182
2183	if [[ $do_compile = true ]]
2184	then
2185	printf "\| \| \n"
2186	printf "\| Files to be compiled: \| \n"
2187	zeile=$source_list
2188	while [[ "$zeile" != "" ]]
2189	do
2190	spalte3=$zeile
2191	printf "\| $spalte3 \| \n"
2192	zeile=$(echo "$zeile" \| cut -c61-)
2193	done
2194	fi
2195	printf "#--------------------------------------------------------------#"
2196
2197
2198
2199	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2200	if [[ $do_trace = true ]]
2201	then
2202	(( i = 0 ))
2203	while (( i < iin ))
2204	do
2205	(( i = i + 1 ))
2206	if (( i == 1 ))
2207	then
2208	printf "\n\n >>> INPUT-file assignments:\n"
2209	fi
2210	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2211	done
2212	(( i = 0 ))
2213	while (( i < iout ))
2214	do
2215	(( i = i + 1 ))
2216	if (( i == 1 ))
2217	then
2218	printf "\n\n >>> OUTPUT-file assignments:\n"
2219	fi
2220	printf "\n ${localout[$i]} : ${pathout[$i]}"
2221	done
2222	(( i = 0 ))
2223	while (( i < iic ))
2224	do
2225	(( i = i + 1 ))
2226	if (( i == 1 ))
2227	then
2228	printf "\n\n >>> INPUT-commands:\n"
2229	fi
2230	printf "\n ${in_command[$i]}"
2231	done
2232	(( i = 0 ))
2233	while (( i < ioc ))
2234	do
2235	(( i = i + 1 ))
2236	if (( i == 1 ))
2237	then
2238	printf "\n\n >>> OUTPUT-commands:\n"
2239	fi
2240	printf "\n ${out_command[$i]}"
2241	done
2242	fi
2243
2244
2245	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2246	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2247	then
2248	antwort=dummy
2249	printf "\n\n"
2250	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2251	do
2252	printf " >>> everything o.k. (y/n) ? "
2253	read antwort
2254	done
2255	if [[ $antwort = n \|\| $antwort = N ]]
2256	then
2257	locat=user_abort; (( iec = 0 )); exit
2258	fi
2259	if [[ $do_batch = true ]]
2260	then
2261	printf " >>> batch-job will be created and submitted"
2262	else
2263	if [[ $local_compile = false ]]
2264	then
2265	printf " >>> MRUN will now continue to execute on this machine"
2266	else
2267	printf " >>> a test compilation will now be carried out on this machine"
2268	fi
2269	fi
2270	fi
2271
2272
2273
2274
2275	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2276	# CHENDE AKTIONEN DURCHGEFUEHRT
2277	if [[ $do_batch = false ]]
2278	then
2279
2280
2281	# TEMPORAEREN KATALOG ERZEUGEN
2282	mkdir -p $TEMPDIR
2283	chmod go+rx $TEMPDIR
2284	tmpcreate=true
2285
2286
2287	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2288	# TEMPORAERES VERZEICHNIS KOPIEREN
2289	if [[ $do_compile = true ]]
2290	then
2291
2292	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2293	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2294	if [[ $localhost = nech ]]
2295	then
2296	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2297	if mkdir -p $TEMPDIR_COMPILE
2298	then
2299	printf "\n *** \"$TEMPDIR_COMPILE\" "
2300	printf "\n is generated as temporary directory for cross compiling\n"
2301	else
2302	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2303	printf "\n needed for cross compilation failed"
2304	locat=compile
2305	exit
2306	fi
2307	else
2308	TEMPDIR_COMPILE=$TEMPDIR
2309	fi
2310
2311
2312	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2313	line=""
2314	grep "%depository_path" $config_file > tmp_mrun
2315	while read line
2316	do
2317	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2318	then
2319	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2320	then
2321	global_depository_path=`echo $line \| cut -d" " -s -f2`
2322	fi
2323	fi
2324	done < tmp_mrun
2325
2326	line=""
2327	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2328	while read line
2329	do
2330	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2331	then
2332	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2333	then
2334	local_depository_path=`echo $line \| cut -d" " -s -f2`
2335	fi
2336	fi
2337	done < tmp_mrun
2338
2339	if [[ "$local_depository_path" = "" ]]
2340	then
2341	if [[ "$global_depository_path" != "" ]]
2342	then
2343	local_depository_path=$global_depository_path
2344	else
2345	printf "\n\n +++ no depository path found in configuration file"
2346	printf "\n for local host \"$localhost\" "
2347	printf "\n please set \"\%depository_path\" in configuration file\n"
2348	locat=config_file; exit
2349	fi
2350	fi
2351	eval local_depository_path=$local_depository_path
2352	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2353	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2354
2355
2356	basename=`print $mainprog \| cut -f1 -d"."`
2357	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2358	if [[ ! -f $make_depository ]]
2359	then
2360	printf "\n"
2361	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2362	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2363	else
2364	cp $make_depository $TEMPDIR_COMPILE
2365	cd $TEMPDIR_COMPILE
2366	tar -xf $make_depository > /dev/null 2>&1
2367	cd - > /dev/null
2368	fi
2369
2370	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2371
2372	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2373	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2374	# MAKEFILE EINTRAGEN
2375	# cd $TEMPDIR_COMPILE
2376	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2377	# if [[ "$interface_file" != "" ]]
2378	# then
2379	# interface_file=`echo $interface_file \| cut -d"." -f1`
2380	# mv Makefile Makefile_old
2381	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2382	# fi
2383	# cd - > /dev/null
2384	else
2385	cp $executable ${TEMPDIR}/a.out
2386	fi
2387
2388
2389	# WECHSEL IN TEMPORAEREN KATALOG
2390	cd $TEMPDIR
2391	printf "\n *** changed to temporary directory: $TEMPDIR"
2392
2393
2394	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2395	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2396	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2397	# ERMITTELN
2398	(( i = 0 ))
2399	while (( i < iout ))
2400	do
2401	(( i = i + 1 ))
2402	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2403	then
2404	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2405	else
2406	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2407	fi
2408	done
2409
2410
2411	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2412	if [[ $do_compile = true ]]
2413	then
2414
2415
2416	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2417	printf "\n\n\n *** compilation starts \n$striche\n"
2418	printf " *** compilation with make using following options:\n"
2419	printf " make depository: $make_depository"
2420	printf " compilername: $compiler_name\n"
2421	printf " options: $fopts\n"
2422	printf " preprocessor-directives: $cpp_options \n"
2423	printf " linker-options: $lopts \n"
2424	printf " source code files: $source_list \n"
2425
2426	if [[ $localhost = nech ]]
2427	then
2428	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2429	cp $TEMPDIR_COMPILE/a.out .
2430	[[ $? != 0 ]] && compile_error=true
2431	rm -rf $TEMPDIR_COMPILE
2432	elif [[ $localhost = ibmh ]]
2433	then
2434	printf " compiler is called via ssh on \"plogin1\" \n"
2435	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2436	[[ ! -f a.out ]] && compile_error=true
2437	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2438	elif [[ $localhost = lcsgib ]]
2439	then
2440	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2441	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2442	[[ ! -f a.out ]] && compile_error=true
2443	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2444	elif [[ $localhost = lcsgih ]]
2445	then
2446	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2447	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2448	[[ ! -f a.out ]] && compile_error=true
2449	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2450	else
2451	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2452	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2453	fi
2454
2455	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2456	then
2457	printf "\n +++ error occured while compiling or linking"
2458	locat=compile
2459
2460	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2461	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2462	# then
2463	exit
2464	# else
2465	# locat=normal
2466	# fi
2467	else
2468	printf "$striche\n *** compilation finished \n"
2469	fi
2470	fi
2471
2472
2473	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2474	if [[ $local_compile = true ]]
2475	then
2476	cd $HOME
2477	rm -rf $TEMPDIR
2478	locat=local_compile; exit
2479	fi
2480
2481
2482	# BEREITSTELLEN DER INPUT-DATEIEN
2483	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2484	(( i = 0 ))
2485	while (( i < iin ))
2486	do
2487	(( i = i + 1 ))
2488	if (( i == 1 ))
2489	then
2490	printf "\n\n *** providing INPUT-files:\n$striche"
2491	fi
2492
2493
2494	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2495	if [[ "${transin[$i]}" = unavailable ]]
2496	then
2497	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2498	then
2499	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2500	printf "\n is not available!"
2501	else
2502	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2503	printf "\n is not available!"
2504	fi
2505	continue
2506	fi
2507
2508	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2509	files_for_pes=false; datentyp=file
2510	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2511	then
2512	files_for_pes=true; datentyp=directory
2513	actionin[$i]=""
2514	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2515	then
2516	actionin[$i]=""
2517	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2518	then
2519	files_for_pes=true; datentyp=directory
2520	actionin[$i]="ar"
2521	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2522	then
2523	actionin[$i]="ar"
2524	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2525	then
2526	files_for_pes=true; datentyp=directory
2527	actionin[$i]="fl"
2528	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2529	then
2530	actionin[$i]="fl"
2531	fi
2532
2533	if [[ $files_for_pes = true ]]
2534	then
2535	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2536	else
2537	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2538	fi
2539
2540	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2541	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2542	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2543	# SERVER ZU HOLEN
2544	if [[ "${actionin[$i]}" = fl ]]
2545	then
2546	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2547	if [[ $files_for_pes = false ]]
2548	then
2549	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2550	then
2551	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2552	got_tmp[$i]=true
2553	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2554	then
2555	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2556	printf "\n *** trying to use backup copy in \"$WORK\" "
2557	cp $WORK/${frelin[$i]} ${localin[$i]}
2558	else
2559	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2560	printf "\n or \"$tmp_data_catalog\" does not exist!"
2561	printf "\n *** trying to get copy from archive"
2562	actionin[$i]=ar
2563	fi
2564	else
2565	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2566	then
2567	mkdir ${localin[$i]}
2568	cd $tmp_data_catalog/${frelin[$i]}
2569	for file in $(ls *)
2570	do
2571	ln $file $TEMPDIR/${localin[$i]}
2572	done
2573	cd $TEMPDIR
2574	got_tmp[$i]=true
2575	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2576	then
2577	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2578	printf "\n *** trying to use backup copy in \"$WORK\" "
2579	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2580	else
2581	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2582	printf "\n or \"$tmp_data_catalog\" does not exist!"
2583	printf "\n *** trying to get copy from archive"
2584	actionin[$i]=ar
2585	fi
2586	fi
2587	fi
2588
2589
2590	# DATEI LIEGT AUF ARCHIV-SERVER
2591	if [[ "${actionin[$i]}" = ar ]]
2592	then
2593
2594	if [[ $files_for_pes = false ]]
2595	then
2596	printf "\n file will be restored from archive-system ($archive_system)!"
2597	else
2598	printf "\n directory will be restored from archive-system ($archive_system)!"
2599	fi
2600
2601	file_restored=false
2602
2603	if [[ $archive_system = asterix ]]
2604	then
2605	do_stagein=true
2606	(( stagein_anz = 0 ))
2607	while [[ $do_stagein = true ]]
2608	do
2609	if [[ $files_for_pes = false ]]
2610	then
2611	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2612	else
2613	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2614	fi
2615	cat STAGEIN_OUTPUT
2616	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2617	then
2618	file_restored=true
2619	do_stagein=false
2620	else
2621	(( stagein_anz = stagein_anz + 1 ))
2622	if (( stagein_anz == 10 ))
2623	then
2624	printf "\n +++ stagein stoped after 10 tries"
2625	locat=stage
2626	exit
2627	fi
2628	printf "\n +++ restoring from archive failed, trying again:"
2629	sleep 900
2630	fi
2631	done
2632	elif [[ $archive_system = DMF ]]
2633	then
2634	if [[ $files_for_pes = false ]]
2635	then
2636	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2637	locat=DMF
2638	exit
2639	else
2640	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2641	cp -r $ARCHIVE/${frelin[$i]} $PWD
2642	file_restored=true
2643	fi
2644	elif [[ $archive_system = tivoli ]]
2645	then
2646	if [[ $files_for_pes = false ]]
2647	then
2648	if [[ $localhost = lcsgih ]]
2649	then
2650	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2651	else
2652	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2653	fi
2654	else
2655	(( inode = 0 ))
2656	while (( inode < nodes ))
2657	do
2658	if [[ $localhost = lcsgih ]]
2659	then
2660	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2661	else
2662	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2663	fi
2664	(( inode = inode + 1 ))
2665	done
2666	fi
2667	file_restored=true
2668	elif [[ $archive_system = ut ]]
2669	then
2670	if [[ $files_for_pes = false ]]
2671	then
2672	cp $UT/${frelin[$i]} .
2673	else
2674	(( inode = 0 ))
2675	while (( inode < nodes ))
2676	do
2677	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2678	(( inode = inode + 1 ))
2679	done
2680	fi
2681	file_restored=true
2682	else
2683	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2684	locat=rearchive
2685	exit
2686	fi
2687
2688	if [[ $file_restored = true ]]
2689	then
2690
2691	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2692	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2693	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2694	if [[ $files_for_pes = false ]]
2695	then
2696	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2697	else
2698	mkdir $tmp_data_catalog/${frelin[$i]}
2699	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2700	fi
2701	got_tmp[$i]=true
2702
2703	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2704	mv ${frelin[$i]} ${localin[$i]}
2705
2706	fi
2707	fi
2708
2709
2710	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2711	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2712	then
2713
2714	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2715	then
2716
2717	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2718	printf "\n file will be provided for $numprocs processors"
2719	mkdir ${localin[$i]}
2720	ival=$numprocs
2721	(( ii = 0 ))
2722	while (( ii <= ival-1 ))
2723	do
2724	if (( ii < 10 ))
2725	then
2726	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2727	elif (( ii < 100 ))
2728	then
2729	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2730	elif (( ii < 1000 ))
2731	then
2732	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2733	else
2734	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2735	fi
2736	(( ii = ii + 1 ))
2737	done
2738
2739	else
2740
2741	if [[ $files_for_pes = true ]]
2742	then
2743
2744	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2745	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2746	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2747	# PER MOVE UMBENANNT WERDEN
2748	printf "\n providing $numprocs files for the respective processors"
2749	mkdir ${localin[$i]}
2750	if [[ $link_local_input = true ]]
2751	then
2752	printf " using ln -f\n"
2753	cd ${absnamein[$i]}
2754	for file in $(ls *)
2755	do
2756	ln -f $file ${localin[$i]}
2757	done
2758	cd $TEMPDIR
2759	fi
2760	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2761	if [[ ! -f "${localin[$i]}/_0000" ]]
2762	then
2763	if [[ $link_local_input = true ]]
2764	then
2765	printf " ln failed for .../_0000, using cp...\n"
2766	fi
2767	cp -r ${absnamein[$i]}/* ${localin[$i]}
2768	fi
2769
2770	else
2771	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2772	if [[ $link_local_input = true ]]
2773	then
2774	printf " using ln -f\n"
2775	ln -f ${absnamein[$i]} ${localin[$i]}
2776	fi
2777	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2778	if [[ ! -f "${localin[$i]}" ]]
2779	then
2780	if [[ $link_local_input = true ]]
2781	then
2782	printf " ln failed, using cp...\n"
2783	fi
2784	cp ${absnamein[$i]} ${localin[$i]}
2785	fi
2786	fi
2787	fi
2788	fi
2789
2790	done
2791	if (( i != 0 ))
2792	then
2793	printf "\n$striche\n *** all INPUT-files provided \n"
2794	fi
2795
2796
2797	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2798	(( i = 0 ))
2799	while (( i < iic ))
2800	do
2801	(( i = i + 1 ))
2802	if (( i == 1 ))
2803	then
2804	printf "\n\n *** execution of INPUT-commands:\n$striche"
2805	fi
2806	printf "\n >>> ${in_command[$i]}"
2807	eval ${in_command[$i]}
2808	if (( i == iic ))
2809	then
2810	printf "\n$striche\n"
2811	fi
2812	done
2813
2814
2815	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2816	cpurest=${cpumax}.
2817
2818
2819	# START DVR STREAMING SERVER
2820	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2821	then
2822	if [[ "$dvr_server" != "" ]]
2823	then
2824
2825	printf "\n\n *** preparing the dvr streaming server configuration file"
2826
2827	# Check, if a dvr server is already running
2828	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2829	if [[ "$running_dvrserver_id" != "" ]]
2830	then
2831
2832	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2833	printf "\n This server is used instead starting a new one!"
2834	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2835
2836	else
2837
2838	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2839	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2840	then
2841	cp ${PALM_BIN}/.dvrserver.config .
2842
2843	# Entering the BASEDIR, UID and GID into this file
2844	user_id=`id -u`
2845	group_id=`id -g`
2846	# & is needed as seperator, because TEMPDIR contains /
2847	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2848	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2849	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2850	mv .dvrserver.3 .dvrserver.config
2851	rm .dvrserver.1 .dvrserver.2
2852
2853	# Start dvr server in background, get his id and print on terminal
2854	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2855	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2856	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2857	local_dvrserver_running=.TRUE.
2858	else
2859	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2860	printf "\n \"$PALM_BIN\" "
2861	locat=dvr
2862	exit
2863	fi
2864
2865	fi
2866
2867	else
2868	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2869	fi
2870	fi
2871
2872
2873	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2874	# LESEN VON PALM)
2875	cat > ENVPAR << %%END%%
2876	&envpar run_identifier = '$fname', host = '$localhost',
2877	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2878	maximum_cpu_time_allowed = ${cpumax}.,
2879	revision = '$global_revision',
2880	local_dvrserver_running = $local_dvrserver_running /
2881
2882	%%END%%
2883
2884
2885	# PROGRAMMSTART
2886	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2887	PATH=$PATH:$TEMPDIR
2888
2889	# MPI debug option (argument checking, slows down execution due to increased latency)
2890	if [[ "$mpi_debug" = true ]]
2891	then
2892	export MPI_CHECK_ARGS=1
2893	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2894	fi
2895
2896	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2897	then
2898	if [[ "$ENVIRONMENT" = BATCH ]]
2899	then
2900	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2901	then
2902	printf "\n +++ debug is allowed in interactive mode only"
2903	locat=debug
2904	exit
2905	fi
2906	fi
2907	if [[ $localhost = decalpha ]]
2908	then
2909	dxladebug a.out
2910	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2911	then
2912
2913	# SETUP THE IBM MPI ENVIRONMENT
2914	export MP_SHARED_MEMORY=yes
2915	export AIXTHREADS_SCOPE=S
2916	export OMP_NUM_THREADS=$threads_per_task
2917	export AUTHSTATE=files
2918	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2919
2920	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2921	export MP_ADAPTER_USE=shared
2922	export MP_CPU_USE=multiple
2923	export MP_TIMEOUT=1200
2924
2925	unset MP_TASK_AFFINITY
2926
2927	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2928	#(( ii = 1 ))
2929	#while (( ii <= $numprocs ))
2930	#do
2931	# echo $localhost_realname >> hostfile
2932	# (( ii = ii + 1 ))
2933	#done
2934	#export MP_HOSTFILE=hostfile
2935
2936	if [[ "$LOADLBATCH" = yes ]]
2937	then
2938	totalview poe a.out $ROPTS
2939	else
2940	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2941	export TVDSVRLAUNCHCMD=ssh
2942	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2943	fi
2944	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2945	then
2946	# CURRENTLY NO DEBUGGER ON LCSGI
2947	if [[ $run_coupled_model = true ]]
2948	then
2949	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2950	locat=debug
2951	exit
2952	else
2953	echo "no_coupling" > runfile_atmos
2954	fi
2955	(( ii = $numprocs / $threads_per_task ))
2956	export OMP_NUM_THREADS=$threads_per_task
2957	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2958	if [[ $threads_per_task != 1 ]]
2959	then
2960	printf "\n threads per task: $threads_per_task"
2961	fi
2962	printf "\n\n"
2963	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2964	then
2965	# export MPI_LAUNCH_TIMEOUT=360
2966	if [[ "$totalview" = true ]]
2967	then
2968	printf "\n running totalview debugger"
2969	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2970	else
2971	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2972	fi
2973	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2974	then
2975	# ulimit -s 300000 # A too large stack size causes problems
2976	# export MV2_NUM_PORTS=2
2977	# export MV2_CPU_MAPPING=0:1:2:3
2978	if [[ "$totalview" = true ]]
2979	then
2980	printf "\n running totalview debugger"
2981	mpiexec -tv ./a.out $ROPTS < runfile_atmos
2982	else
2983	mpiexec ./a.out $ROPTS < runfile_atmos
2984	fi
2985	fi
2986	else
2987	printf "\n +++ no debug available on \"$localhost\" "
2988	printf "\n or not implemented in mrun so far"
2989	locat=debug
2990	exit
2991	fi
2992	else
2993	if [[ -n $numprocs ]]
2994	then
2995	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2996	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2997	then
2998	# SETUP THE IBM MPI ENVIRONMENT
2999	if [[ $host != ibmh ]]
3000	then
3001	export MP_SHARED_MEMORY=yes
3002	export AIXTHREAD_SCOPE=S
3003	export OMP_NUM_THREADS=$threads_per_task
3004	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3005	export AUTHSTATE=files
3006	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3007	# export MP_PRINTENV=yes
3008
3009	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3010	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3011	export MP_WAIT_MODE=poll
3012	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3013	fi
3014	if [[ "$LOADLBATCH" = yes ]]
3015	then
3016	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3017	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3018	then
3019	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3020	else
3021	if [[ $run_coupled_model = false ]]
3022	then
3023	if [[ "$ocean_file_appendix" = true ]]
3024	then
3025	echo "precursor_ocean" > runfile_atmos
3026	else
3027	echo "precursor_atmos" > runfile_atmos
3028	fi
3029	else
3030	(( iia = $numprocs_atmos / $threads_per_task ))
3031	(( iio = $numprocs_ocean / $threads_per_task ))
3032	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3033	printf "\n using $coupled_mode coupling"
3034	printf "\n\n"
3035	echo "coupled_run $iia $iio" > runfile_atmos
3036	fi
3037	poe ./a.out $ROPTS < runfile_atmos
3038	fi
3039	else
3040	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3041	then
3042	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3043	elif [[ $localhost = ibmy ]]
3044	then
3045	if [[ -f $hostfile ]]
3046	then
3047	cp $hostfile hostfile
3048	else
3049	(( ii = 1 ))
3050	while (( ii <= $numprocs ))
3051	do
3052	echo $localhost_realname >> hostfile
3053	(( ii = ii + 1 ))
3054	done
3055	fi
3056	export MP_HOSTFILE=hostfile
3057	if [[ $run_coupled_model = false ]]
3058	then
3059	if [[ "$ocean_file_appendix" = true ]]
3060	then
3061	echo "precursor_ocean" > runfile_atmos
3062	else
3063	echo "precursor_atmos" > runfile_atmos
3064	fi
3065	else
3066	(( iia = $numprocs_atmos / $threads_per_task ))
3067	(( iio = $numprocs_ocean / $threads_per_task ))
3068	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3069	printf "\n using $coupled_mode coupling"
3070	printf "\n\n"
3071	echo "coupled_run $iia $iio" > runfile_atmos
3072	fi
3073	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3074
3075	else
3076	if [[ "$host_file" = "" ]]
3077	then
3078	printf "\n +++ no hostfile given in configuration file"
3079	locat=config_file
3080	exit
3081	else
3082	eval host_file=$host_file
3083	fi
3084	export MP_HOSTFILE=$host_file
3085	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3086	fi
3087	fi
3088	elif [[ $host = nech \|\| $host = necriam ]]
3089	then
3090	(( ii = nodes ))
3091	if [[ $ii = 1 ]]
3092	then
3093	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3094	export MPIPROGINF=YES
3095	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3096	echo "*** execution on single node with mpirun"
3097	mpirun -np $numprocs ./a.out $ROPTS
3098	else
3099	(( i = 0 ))
3100	while (( i < ii ))
3101	do
3102	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3103	(( i = i + 1 ))
3104	done
3105
3106	echo "#!/bin/sh" > mpi_exec_shell
3107	echo " " >> mpi_exec_shell
3108	echo "set -u" >> mpi_exec_shell
3109	echo "F_ERRCNT=0" >> mpi_exec_shell
3110	echo "MPIPROGINV=YES" >> mpi_exec_shell
3111	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3112	echo "cpurest=$cpurest" >> mpi_exec_shell
3113	echo "fname=$fname" >> mpi_exec_shell
3114	echo "localhost=$localhost" >> mpi_exec_shell
3115	echo "return_addres=$return_addres" >> mpi_exec_shell
3116	echo "return_username=$return_username" >> mpi_exec_shell
3117	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3118	echo "write_binary=$write_binary" >> mpi_exec_shell
3119	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3120	echo " " >> mpi_exec_shell
3121	echo "export F_ERRCNT" >> mpi_exec_shell
3122	echo "export MPIPROGINV" >> mpi_exec_shell
3123	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3124	echo "export cpurest" >> mpi_exec_shell
3125	echo "export fname" >> mpi_exec_shell
3126	echo "export localhost" >> mpi_exec_shell
3127	echo "export return_addres" >> mpi_exec_shell
3128	echo "export return_username" >> mpi_exec_shell
3129	echo "export tasks_per_node" >> mpi_exec_shell
3130	echo "export write_binary" >> mpi_exec_shell
3131	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3132	echo " " >> mpi_exec_shell
3133	echo "exec ./a.out" >> mpi_exec_shell
3134
3135	chmod u+x mpi_exec_shell
3136	export MPIPROGINF=YES
3137	mpirun -f multinode_config &
3138	wait
3139
3140	fi
3141	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3142	then
3143
3144	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3145	# DOES NOT EXIST
3146	if [[ $host != lcsgih && $host != lcsgib ]]
3147	then
3148	if [[ -f $hostfile ]]
3149	then
3150	cp $hostfile hostfile
3151	else
3152	(( ii = 1 ))
3153	while (( ii <= $numprocs / $threads_per_task ))
3154	do
3155	echo $localhost_realname >> hostfile
3156	(( ii = ii + 1 ))
3157	done
3158	fi
3159	eval zeile=\"`head -n $ii hostfile`\"
3160	printf "\n *** running on: $zeile"
3161	fi
3162
3163	(( ii = $numprocs / $threads_per_task ))
3164	export OMP_NUM_THREADS=$threads_per_task
3165	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3166	if [[ $threads_per_task != 1 ]]
3167	then
3168	# increase stack size to unlimited, because large runs
3169	# may abort otherwise
3170	ulimit -Ss unlimited
3171	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3172	fi
3173	if [[ $run_coupled_model = false ]]
3174	then
3175	if [[ "$ocean_file_appendix" = true ]]
3176	then
3177	echo "precursor_ocean" > runfile_atmos
3178	else
3179	echo "precursor_atmos" > runfile_atmos
3180	fi
3181	printf "\n\n"
3182	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3183	then
3184	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3185	then
3186	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3187	# export MPI_DSM_DISTRIBUTE=1
3188	# MPI_DSM_CPULIST: pin MPI processes to cores
3189	if [[ $use_openmp = false ]]
3190	then
3191	if [[ "$sgi_feature" = ice2 ]]
3192	then
3193	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3194	else
3195	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3196	fi
3197	fi
3198	# MPI_IB_RAILS: use both IB rails on ICE2
3199	export MPI_BUFS_PER_HOST=512
3200	export MPI_IB_RAILS=2
3201	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3202	export MPI_CONNECTIONS_THRESHOLD=8192
3203	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3204	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3205
3206	# next is test for openmp usage
3207	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3208	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3209	then
3210	export MV2_NUM_PORTS=2
3211	# The default setting of MV2_CPU_MAPPING gives best results
3212	# export MV2_ENABLE_AFFINITY=1
3213	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3214	# if [[ "$sgi_feature" = ice2 ]]
3215	# then
3216	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3217	# else
3218	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3219	# fi
3220	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3221	if [[ $threads_per_task != 1 ]]
3222	then
3223	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3224	else
3225	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3226	fi
3227	fi
3228	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3229	then
3230	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3231	else
3232	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3233	fi
3234	else
3235
3236	# currently there is no full MPI-2 support on ICE and XT4
3237	(( iia = $numprocs_atmos / $threads_per_task ))
3238	(( iio = $numprocs_ocean / $threads_per_task ))
3239	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3240	printf "\n using $coupled_mode coupling"
3241	printf "\n\n"
3242
3243	if [[ $coupled_mode = "mpi2" ]]
3244	then
3245	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3246	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3247	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3248	then
3249
3250	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3251	then
3252	# export MPI_LAUNCH_TIMEOUT=360
3253	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3254	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3255	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3256	then
3257	# ulimit -s 300000 # A too large stack size causes problems
3258	# export MV2_NUM_PORTS=2
3259	# export MV2_CPU_MAPPING=0:1:2:3
3260	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3261	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3262	fi
3263
3264	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3265	then
3266
3267	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3268	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3269
3270	else
3271	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3272	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3273	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3274	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3275	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3276	fi
3277	wait
3278
3279	else
3280
3281	echo "coupled_run $iia $iio" > runfile_atmos
3282	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3283	then
3284
3285	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3286	then
3287	# export MPI_LAUNCH_TIMEOUT=360
3288	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3289	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3290	then
3291	# ulimit -s 300000 # A too large stack size causes problems
3292	# export MV2_NUM_PORTS=2
3293	# export MV2_CPU_MAPPING=0:1:2:3
3294	mpiexec ./a.out $ROPTS < runfile_atmos
3295	fi
3296
3297	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3298	then
3299
3300	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3301
3302	elif [[ $host = lck ]]
3303	then
3304	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3305	fi
3306	wait
3307	fi
3308
3309	# if [[ $scirocco = true ]]
3310	# then
3311	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3312	# else
3313	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3314	# fi
3315	fi
3316	elif [[ $host = decalpha ]]
3317	then
3318	dmpirun -np $numprocs a.out $ROPTS
3319	elif [[ $host = lckyoto ]]
3320	then
3321	set -xv
3322	export P4_RSHCOMMAND=plesh
3323	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3324	if [[ "$ENVIRONMENT" = BATCH ]]
3325	then
3326	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3327	# for pgi mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3328	# for intel mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3329	else
3330	mpirun -np $numprocs ./a.out $ROPTS
3331	# for intel mpiruni_rsh -np $numprocs ./a.out $ROPTS
3332	fi
3333	set +xv
3334	elif [[ $host = lctit ]]
3335	then
3336	export runfile=runfile.$kennung
3337
3338	echo "cd $PWD" > $runfile
3339	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3340	echo "export cpurest=$cpurest" >> $runfile
3341	echo "export fname=$fname" >> $runfile
3342	echo "export localhost=$localhost" >> $runfile
3343	echo "export return_addres=$return_addres" >> $runfile
3344	echo "export return_username=$return_username" >> $runfile
3345	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3346	echo "export write_binary=$write_binary" >> $runfile
3347	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3348	echo "./a.out" >> $runfile
3349	chmod u+x $runfile
3350
3351	if [[ "$QUEUE" = interactive ]]
3352	then
3353	mpirun -np $numprocs a.out $ROPTS
3354	else
3355	(( mem_tsubame = $memory / 1024.0 ))
3356	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3357	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3358	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3359	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3360	fi
3361
3362	rm $runfile
3363	else
3364	mpprun -n $numprocs a.out $ROPTS
3365	fi
3366	[[ $? != 0 ]] && execution_error=true
3367
3368
3369	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3370	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3371	then
3372	apprentice
3373	fi
3374	else
3375	a.out $ROPTS
3376	fi
3377	fi
3378	if [[ $? != 0 \|\| $execution_error = true ]]
3379	then
3380
3381	# ABBRUCH BEI LAUFZEITFEHLER
3382	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3383	printf "\n +++ runtime error occured"
3384	locat=execution
3385	exit
3386	else
3387	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3388	printf "\n$striche\n *** execution finished \n"
3389
3390	# Stop the dvr streaming server and process the dvr output in order
3391	# to create dvrs- and html-files containing all streams
3392	if [[ "$dvrserver_id" != "" ]]
3393	then
3394	kill $dvrserver_id
3395	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3396
3397	# If there is a directory, data have been output by the
3398	# streaming server. Otherwise, user has chosen dvrp_output=local
3399	if [[ -d DATA_DVR ]]
3400	then
3401
3402	# Add the current dvr configuration file to the dvr output
3403	# directory
3404	cp .dvrserver.config DATA_DVR
3405
3406	# Process the dvr output (option -s for also generating
3407	# sequence mode data)
3408	process_dvr_output -d DATA_DVR -f $fname -s
3409
3410	else
3411
3412	# Process the local output
3413	process_dvr_output -l -d DATA_DVR -f $fname
3414
3415	fi
3416
3417	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3418	then
3419
3420	# Process dvr output generated in local mode (dvrp_output=local)
3421	process_dvr_output -l -d DATA_DVR -f $fname
3422
3423	fi
3424	fi
3425
3426
3427
3428	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3429	(( i = 0 ))
3430	while (( i < ioc ))
3431	do
3432	(( i = i + 1 ))
3433	if (( i == 1 ))
3434	then
3435	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3436	fi
3437	printf "\n >>> ${out_command[$i]}"
3438	eval ${out_command[$i]}
3439	if (( i == ioc ))
3440	then
3441	printf "\n$striche\n"
3442	fi
3443	done
3444
3445
3446	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3447	if [[ $do_trace = true ]]
3448	then
3449	printf "\n\n"
3450	ls -al
3451	fi
3452
3453
3454
3455	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3456	(( i = 0 ))
3457	while (( i < iout ))
3458	do
3459	(( i = i + 1 ))
3460	if (( i == 1 ))
3461	then
3462	printf "\n\n *** saving OUTPUT-files:\n$striche"
3463	fi
3464
3465	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3466	files_for_pes=false; filetyp=file
3467	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3468	then
3469	files_for_pes=true; filetyp=directory
3470	actionout[$i]=""
3471	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3472	then
3473	actionout[$i]=""
3474	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3475	then
3476	files_for_pes=true; filetyp=directory
3477	actionout[$i]="ar"
3478	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3479	then
3480	actionout[$i]="ar"
3481	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3482	then
3483	files_for_pes=true; filetyp=directory
3484	actionout[$i]="fl"
3485	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3486	then
3487	actionout[$i]="fl"
3488	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3489	then
3490	files_for_pes=true; filetyp=directory
3491	actionout[$i]="tr"
3492	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3493	then
3494	actionout[$i]="tr"
3495	fi
3496
3497	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3498	then
3499	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3500	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3501	then
3502	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3503	else
3504
3505
3506	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3507	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3508	# REMOTE-RECHNUNGEN
3509	if [[ "${actionout[$i]}" = tr ]]
3510	then
3511	if [[ $localhost != $fromhost ]]
3512	then
3513	if [[ $files_for_pes = false ]]
3514	then
3515	cps=""
3516	cst=""
3517	else
3518	cps=-c
3519	cst="/"
3520	fi
3521	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3522	then
3523
3524	# TRANSFER IN EIGENSTAENDIGEM JOB
3525	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3526	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3527	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3528	if [[ $files_for_pes = false ]]
3529	then
3530	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3531	else
3532	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3533	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3534	fi
3535
3536	echo "set -x" > transfer_${localout[$i]}
3537	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3538
3539	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3540	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3541	printf "\n or higher cycle\n"
3542	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3543
3544	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3545
3546	if [[ $localhost = nech ]]
3547	then
3548	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3549	else
3550	if [[ "$LOGNAME" = b323013 ]]
3551	then
3552	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3553	else
3554	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3555	fi
3556	fi
3557
3558	else
3559
3560	# TRANSFER INNERHALB DIESES JOBS
3561	transfer_failed=false
3562	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3563	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3564	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3565	[[ $? != 0 ]] && transfer_failed=true
3566
3567	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3568	# LOKALER MASCHINE ANLEGEN
3569	if [[ $transfer_failed = true ]]
3570	then
3571	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3572	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3573
3574	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3575	# ANLEGEN.
3576	eval local_catalog=${pathout[$i]}
3577	if [[ ! -d $local_catalog ]]
3578	then
3579	printf " *** local directory does not exist. Trying to create:\n"
3580	printf " $local_catalog \n"
3581	mkdir -p $local_catalog
3582	fi
3583	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3584	transfer_problems=true
3585	fi
3586	fi
3587	else
3588
3589	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3590	actionout[$i]=""
3591	fi
3592	fi
3593
3594
3595	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3596	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3597	# REMOTE-RECHNUNGEN
3598	if [[ "${actionout[$i]}" = tra ]]
3599	then
3600	if [[ $localhost != $fromhost ]]
3601	then
3602	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3603	then
3604
3605	# TRANSFER IN EIGENSTAENDIGEM JOB
3606	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3607	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3608	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3609	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3610
3611	echo "set -x" > transfer_${localout[$i]}
3612	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3613
3614	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3615	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3616	printf "\n or higher cycle\n"
3617	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3618
3619	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3620
3621	if [[ $localhost = nech ]]
3622	then
3623	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3624	else
3625	if [[ $LOGNAME = b323013 ]]
3626	then
3627	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3628	else
3629	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3630	fi
3631	fi
3632
3633	else
3634
3635	# TRANSFER INNERHALB DIESES JOBS
3636	transfer_failed=false
3637	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3638	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3639	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3640	[[ $? != 0 ]] && transfer_failed=true
3641
3642	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3643	# LOKALER MASCHINE ANLEGEN
3644	if [[ $transfer_failed = true ]]
3645	then
3646	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3647	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3648
3649	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3650	# ANLEGEN
3651	eval local_catalog=${pathout[$i]}
3652	if [[ ! -d $local_catalog ]]
3653	then
3654	printf " *** local directory does not exist. Trying to create:\n"
3655	printf " $local_catalog \n"
3656	mkdir -p $local_catalog
3657	fi
3658
3659	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3660	transfer_problems=true
3661	fi
3662	fi
3663	else
3664
3665	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3666	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3667	actionout[$i]=a
3668	fi
3669	fi
3670
3671
3672	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3673	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3674	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3675	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3676	if [[ "${actionout[$i]}" = fl ]]
3677	then
3678	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3679	chmod g+rx $tmp_data_catalog
3680	if [[ $files_for_pes = false ]]
3681	then
3682	printf "\n >>> OUTPUT: ${localout[$i]} to"
3683	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3684	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3685	else
3686	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3687	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3688	mkdir $tmp_data_catalog/${frelout[$i]}
3689	cd ${localout[$i]}
3690	for file in $(ls *)
3691	do
3692	ln -f $file $tmp_data_catalog/${frelout[$i]}
3693	done
3694	cd $TEMPDIR
3695	fi
3696
3697
3698	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3699	if [[ $store_on_archive_system = true ]]
3700	then
3701
3702	if [[ $archive_system = asterix ]]
3703	then
3704	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3705	if [[ $files_for_pes = false ]]
3706	then
3707	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3708	else
3709	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3710	fi
3711	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3712	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3713	echo "then" >> archive_${frelout[$i]}
3714	echo " do_stageout=false" >> archive_${frelout[$i]}
3715	echo "else" >> archive_${frelout[$i]}
3716	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3717	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3718	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3719	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3720	if [[ $files_for_pes = false ]]
3721	then
3722	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3723	else
3724	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3725	fi
3726	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3727	echo "fi" >> archive_${frelout[$i]}
3728	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3729	elif [[ $archive_system = DMF ]]
3730	then
3731	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3732	if [[ $files_for_pes = false ]]
3733	then
3734	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3735	locat=DMF
3736	exit
3737	else
3738	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3739	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3740	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3741	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3742	fi
3743	elif [[ $archive_system = tivoli ]]
3744	then
3745	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3746	if [[ $files_for_pes = false ]]
3747	then
3748	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3749	echo "set -x" >> archive_${frelout[$i]}
3750	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3751	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3752	else
3753
3754	echo "set -x" >> archive_${frelout[$i]}
3755	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3756	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3757	cd $tmp_data_catalog
3758	all_files=`ls -1 ${frelout[$i]}/*`
3759	cd - > /dev/null
3760	(( inode = 0 ))
3761	(( tp1 = tasks_per_node + 1 ))
3762	while (( inode < nodes ))
3763	do
3764	# echo "*** all_files = \"$all_files\" "
3765	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3766	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3767	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3768	# echo "*** files = \"$files\" "
3769	# echo "*** all_files = \"$all_files\" "
3770	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3771	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3772	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3773	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3774	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3775	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3776	(( inode = inode + 1 ))
3777	done
3778	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3779	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3780	fi
3781	elif [[ $archive_system = ut ]]
3782	then
3783	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3784	if [[ $files_for_pes = false ]]
3785	then
3786	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3787	echo "set -x" >> archive_${frelout[$i]}
3788	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3789	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3790	else
3791
3792	echo "set -x" >> archive_${frelout[$i]}
3793	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3794	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3795	cd $tmp_data_catalog
3796	all_files=`ls -1 ${frelout[$i]}/*`
3797	cd - > /dev/null
3798	(( inode = 0 ))
3799	(( tp1 = tasks_per_node + 1 ))
3800	while (( inode < nodes ))
3801	do
3802	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3803	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3804	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3805	(( inode = inode + 1 ))
3806	done
3807	fi
3808	elif [[ $archive_system = none ]]
3809	then
3810	printf " +++ archiving on $localhost not available!\n"
3811	fi
3812
3813	if [[ $archive_system != none ]]
3814	then
3815	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3816	then
3817	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3818	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3819	elif [[ $localhost = nech ]]
3820	then
3821	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3822	fi
3823	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3824	fi
3825	else
3826	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3827	fi
3828
3829
3830	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3831	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3832	if [[ $files_for_pes = false ]]
3833	then
3834	cat /dev/null > ${pathout[$i]}
3835	else
3836	mkdir -p ${pathout[$i]}
3837	fi
3838
3839	fi
3840
3841
3842	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3843	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3844	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3845	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3846	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3847	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3848	if [[ "${actionout[$i]}" = ar ]]
3849	then
3850	if [[ $files_for_pes = false ]]
3851	then
3852	printf "\n >>> OUTPUT: ${localout[$i]} to"
3853	printf "\n ${pathout[$i]}"
3854	printf "\n File will be copied to archive-system ($archive_system) !\n"
3855	else
3856	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3857	printf "\n ${pathout[$i]}"
3858	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3859	fi
3860	mv ${localout[$i]} ${frelout[$i]}
3861
3862	file_saved=false
3863
3864	if [[ $archive_system = asterix ]]
3865	then
3866	do_stageout=true
3867	(( stageout_anz = 0 ))
3868	while [[ $do_stageout = true ]]
3869	do
3870	if [[ $files_for_pes = false ]]
3871	then
3872	stageout ${frelout[$i]} > STAGE_OUTPUT
3873	else
3874	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3875	fi
3876	cat STAGE_OUTPUT
3877	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3878	then
3879	file_saved=true
3880	do_stageout=false
3881	else
3882	if [[ $files_for_pes = false ]]
3883	then
3884	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3885	else
3886	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3887	fi
3888	(( stageout_anz = stageout_anz + 1 ))
3889	if (( stageout_anz == 10 ))
3890	then
3891	printf "\n +++ stoped after 10 unsuccessful tries!"
3892	archive_save=false
3893	do_stageout=false
3894	else
3895	printf "\n *** new try to store on archive after 15 min:"
3896	sleep 900
3897	fi
3898	fi
3899	done
3900	elif [[ $archive_system = DMF ]]
3901	then
3902	if [[ $files_for_pes = false ]]
3903	then
3904	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3905	locat=DMF
3906	exit
3907	else
3908	rm -rf $ARCHIVE/${frelout[$i]}
3909	cp -r ${frelout[$i]} $ARCHIVE
3910	fi
3911	file_saved=true
3912	elif [[ $archive_system = tivoli ]]
3913	then
3914	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3915	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3916	# GELEGT WERDEN
3917	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3918	chmod g+rx $tmp_data_catalog
3919	if [[ $files_for_pes = false ]]
3920	then
3921	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3922	else
3923	mkdir $tmp_data_catalog/${frelout[$i]}
3924	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3925	fi
3926
3927	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3928	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3929	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3930	if [[ $files_for_pes = false ]]
3931	then
3932	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3933	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3934	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3935	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3936	else
3937	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3938	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3939	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3940	fi
3941
3942	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3943	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3944	file_saved=true
3945
3946	elif [[ $archive_system = ut ]]
3947	then
3948	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3949	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3950	# GELEGT WERDEN
3951	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3952	chmod g+rx $tmp_data_catalog
3953	if [[ $files_for_pes = false ]]
3954	then
3955	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3956	else
3957	mkdir $tmp_data_catalog/${frelout[$i]}
3958	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3959	fi
3960
3961	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3962	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3963	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3964	if [[ $files_for_pes = false ]]
3965	then
3966	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3967	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3968	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3969	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3970	else
3971	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3972	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3973	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3974	fi
3975
3976	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3977	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3978	file_saved=true
3979
3980	else
3981	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3982	archive_save=false
3983	fi
3984	if [[ $file_saved = true ]]
3985	then
3986	if [[ $files_for_pes = false ]]
3987	then
3988	cat /dev/null > ${pathout[$i]}
3989	else
3990	mkdir -p ${pathout[$i]}
3991	fi
3992	fi
3993	fi
3994
3995	# APPEND AUF LOKALER MASCHINE
3996	if [[ "${actionout[$i]}" = "a" ]]
3997	then
3998	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3999	cat ${localout[$i]} >> ${pathout[$i]}
4000	fi
4001
4002	# KOPIEREN AUF LOKALER MASCHINE
4003	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4004	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4005	then
4006
4007	# KOPIEREN AUF EINPROZESSORMASCHINE
4008	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4009	then
4010	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4011	if [[ $link_local_output = true ]]
4012	then
4013	printf " using ln -f\n"
4014	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4015	fi
4016	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4017	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4018	then
4019	if [[ $link_local_output = true ]]
4020	then
4021	printf " ln failed, using cp...\n"
4022	fi
4023	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4024	fi
4025	else
4026	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4027	if [[ $link_local_output = true ]]
4028	then
4029	printf " using ln -f\n"
4030	ln -f ${localout[$i]} ${pathout[$i]}
4031	fi
4032	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4033	if [[ ! -f "${pathout[$i]}" ]]
4034	then
4035	if [[ $link_local_output = true ]]
4036	then
4037	printf " ln failed, using cp...\n"
4038	fi
4039	cp ${localout[$i]} ${pathout[$i]}
4040	fi
4041	fi
4042
4043	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4044	then
4045
4046	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4047	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4048	# WIRD DANN KOPIERT
4049	# PER MOVE UMBENANNT WERDEN
4050	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4051	if [[ $link_local_output = true ]]
4052	then
4053	printf " using ln -f\n"
4054	mkdir ${pathout[$i]}
4055	cd ${localout[$i]}
4056	for file in $(ls *)
4057	do
4058	ln -f $file ${pathout[$i]}
4059	done
4060	cd $TEMPDIR
4061	fi
4062	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4063	if [[ ! -f "${pathout[$i]}/_0000" ]]
4064	then
4065	if [[ $link_local_output = true ]]
4066	then
4067	printf " ln failed for .../_0000, using cp...\n"
4068	fi
4069	cp -r ${localout[$i]} ${pathout[$i]}
4070	fi
4071
4072	fi
4073	fi
4074	done
4075	if (( i != 0 ))
4076	then
4077	if [[ $transfer_problems = true ]]
4078	then
4079	printf "\n$striche\n *** OUTPUT-files saved"
4080	printf "\n +++ WARNING: some data transfers failed! \n"
4081	else
4082	printf "\n$striche\n *** all OUTPUT-files saved \n"
4083	fi
4084	fi
4085
4086
4087	# EVENTUELL FOLGEJOB STARTEN
4088	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4089	if [[ -f CONTINUE_RUN ]]
4090	then
4091
4092	if [[ $archive_save = true ]]
4093	then
4094
4095	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4096	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4097	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4098	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4099	# HANDEN
4100	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4101	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4102	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4103	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4104	then
4105	mc=`echo $mc \| sed 's/#/f/g'`
4106	fi
4107
4108
4109	# JOB STARTEN
4110	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4111	echo " $mc"
4112	printf "\n$striche\n"
4113	if [[ $localhost != $fromhost ]]
4114	then
4115
4116	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4117	then
4118	echo "*** ssh will be used to initiate restart-runs!"
4119	echo " return_addres=\"$return_addres\" "
4120	echo " return_username=\"$return_username\" "
4121	if [[ $return_addres = 172.20.25.41 ]]
4122	then
4123	# WORKAROUND AUF SCIROCCO AM TIT
4124	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4125	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4126	then
4127	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4128	else
4129	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4130	fi
4131	else
4132	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4133	locat=restart; exit
4134	fi
4135
4136	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4137	# DER AKTUELLE JOB ENDET
4138	if [[ $queue = special1q ]]
4139	then
4140	sleep 120
4141	else
4142	sleep 30
4143	fi
4144
4145	else
4146
4147	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4148	# RUFEN WERDEN, AUSSER AUF lcfimm
4149	cd $LOCAL_PWD
4150	if [[ $localhost = lcfimm ]]
4151	then
4152	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4153	else
4154	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4155	fi
4156	cd - > /dev/null
4157	fi
4158	printf "\n$striche\n *** restart-run initiated \n"
4159
4160
4161	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4162	# GEHOLT WORDEN SIND, LOESCHEN
4163	(( i = 0 ))
4164	while (( i < iin ))
4165	do
4166	(( i = i + 1 ))
4167	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4168	then
4169	rm -r $tmp_data_catalog/${frelin[$i]}
4170	fi
4171	done
4172
4173	else
4174
4175	printf "\n +++ no restart-run possible, since errors occured"
4176	printf "\n during the archive process"
4177	fi
4178
4179	fi
4180
4181
4182
4183	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4184	if [[ "$email_notification" != "none" ]]
4185	then
4186
4187	if [[ $localhost != $fromhost ]]
4188	then
4189	if [[ -f CONTINUE_RUN ]]
4190	then
4191	echo "PALM restart run necessary" > email_text
4192	echo "description header of actual run:" >> email_text
4193	cat CONTINUE_RUN >> email_text
4194	echo "mrun-command to restart:" >> email_text
4195	echo "$mc" >> email_text
4196	else
4197	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4198	fi
4199	mail $email_notification < email_text
4200	printf "\n *** email notification sent to \"$email_notification\" "
4201	fi
4202	fi
4203
4204
4205
4206	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4207	cd $HOME
4208	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4209
4210	else
4211
4212
4213	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4214	# CHENDE AKTIONEN DURCHGEFUEHRT
4215
4216	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4217	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4218	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4219	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4220	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4221	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4222	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4223	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4224	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4225	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4226	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4227	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4228	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4229	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4230	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4231	if [[ $use_openmp = true ]]
4232	then
4233	mrun_com=${mrun_com}" -O"
4234	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4235	else
4236	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4237	fi
4238	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4239	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4240	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4241	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4242	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4243	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4244	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4245	if [[ $do_remote = true ]]
4246	then
4247	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4248	fi
4249
4250
4251	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4252	jobfile=jobfile.$RANDOM
4253
4254
4255	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4256	echo "mkdir $TEMPDIR" >> $jobfile
4257	echo "cd $TEMPDIR" >> $jobfile
4258
4259
4260	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4261	if [[ $do_trace = true ]]
4262	then
4263	echo "set -x" >> $jobfile
4264	else
4265	echo "set +vx" >> $jobfile
4266	fi
4267
4268
4269	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4270	# DATEI FUER DEN JOB
4271	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4272	then
4273
4274	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4275	# KOPIEREN
4276	if [[ $restart_run != true ]]
4277	then
4278	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4279	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4280	fi
4281
4282	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4283	echo "set -x" >> $jobfile
4284	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4285	echo "export SOURCES_COMPLETE=true" >> $jobfile
4286
4287	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4288	# ARBEITSVERZEICHNIS VERSCHIEBEN
4289	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4290	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4291	echo "execute_mrun=true" >> $jobfile
4292	echo " " >> $jobfile
4293
4294	else
4295
4296	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4297	# SOWIE GEGEBENENFALLS DES MAKEFILES
4298	if [[ $do_compile = true ]]
4299	then
4300
4301	source_catalog=SOURCES_FOR_RUN_$fname
4302
4303	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4304	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4305	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4306	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4307	echo "export SOURCES_COMPLETE=true" >> $jobfile
4308	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4309
4310	for filename in $source_list
4311	do
4312	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4313	echo "cat > $filename << \"%END%\"" >> $jobfile
4314	cat $source_catalog/$filename >> $jobfile
4315	echo " " >> $jobfile
4316	echo "%END%" >> $jobfile
4317	echo " " >> $jobfile
4318	done
4319
4320	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4321	echo "cat > Makefile << \"%END%\"" >> $jobfile
4322	cat $source_catalog/Makefile >> $jobfile
4323	echo " " >> $jobfile
4324	echo "%END%" >> $jobfile
4325	echo " " >> $jobfile
4326
4327	echo "cd - > /dev/null" >> $jobfile
4328
4329	fi
4330
4331
4332	# ABSPEICHERN DER KONFIGURATIONSDATEI
4333	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4334	echo "cat > $config_file << \"%END%\"" >> $jobfile
4335	cat $config_file >> $jobfile
4336	echo "%END%" >> $jobfile
4337	echo " " >> $jobfile
4338
4339
4340	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4341	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4342	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4343	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4344	echo "%END%" >> $jobfile
4345	if [[ $host = lctit ]]
4346	then
4347	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4348	echo "mv mrun_new $mrun_script_name" >> $jobfile
4349	fi
4350	echo "chmod u+x $mrun_script_name" >> $jobfile
4351	echo "execute_mrun=true" >> $jobfile
4352	echo " " >> $jobfile
4353
4354	fi
4355
4356
4357	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4358	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4359	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4360	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4361	if [[ $do_remote = true ]]
4362	then
4363	(( i = 0 ))
4364	while (( i < iin ))
4365	do
4366	(( i = i + 1 ))
4367	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4368	if [[ "${transin[$i]}" = job ]]
4369	then
4370	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4371	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4372	echo " " >> $jobfile
4373	echo "%END%" >> $jobfile
4374	else
4375	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4376	fi
4377
4378	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4379	echo "if [[ \$? = 1 ]]" >> $jobfile
4380	echo "then" >> $jobfile
4381	echo " echo \" \" " >> $jobfile
4382	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4383	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4384	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4385	echo " execute_mrun=false" >> $jobfile
4386	echo "fi" >> $jobfile
4387	done
4388	fi
4389
4390	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4391	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4392	echo "LOCAL_PWD=$working_directory" >> $jobfile
4393	echo "export LOCAL_PWD" >> $jobfile
4394
4395	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4396	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4397	echo "export LOCAL_MRUN_PATH" >> $jobfile
4398
4399	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4400	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4401	then
4402	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4403	fi
4404
4405	# MRUN AUF ZIELRECHNER AUFRUFEN
4406	echo "set -x" >> $jobfile
4407	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4408
4409	echo 'ls -al; echo `pwd`' >> $jobfile
4410	echo "cd \$HOME" >> $jobfile
4411	echo "rm -rf $TEMPDIR" >> $jobfile
4412
4413
4414
4415
4416	# JOB PER SUBJOB STARTEN
4417	if [[ $silent = false ]]
4418	then
4419	printf "\n "
4420	else
4421	printf "\n\n"
4422	fi
4423
4424	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4425	rm -rf $jobfile
4426
4427
4428	fi # ENDE REMOTE-TEIL
4429
4430
4431
4432	# ENDE DER PROZEDUR

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