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source: palm/trunk/SCRIPTS/mrun @ 1282

Last change on this file since 1282 was 1282, checked in by raasch, 10 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1282 2014-02-01 08:08:02Z raasch $
29	#
30	# 1281 2014-02-01 07:55:49Z raasch
31	# rsync-copy restricted to Cray machines, since command is unavailable on some
32	# other systems
33	#
34	# 1279 2014-01-28 12:10:14Z raasch
35	# tasks_per_node must not be an integral divisor of numprocs any more. This was done
36	# in order to remove annoying restrictions concerning the number of processors which
37	# appear on machines with larger nodes (e.g. containing 24 cores). Now without this
38	# restriction, one of the nodes will be filled with less than the given number of
39	# tasks per node. A respective warning is given.
40	#
41	# 1274 2014-01-09 13:14:54Z heinze
42	# adjustments for lccrayh
43	#
44	# 1272 2014-01-08 10:19:32Z witha
45	# small adjustment for lcflow
46	#
47	# 1270 2013-12-16 11:05:01Z fricke
48	# call of combine_plot_fields adjusted for lccrayb/lccrayh
49	#
50	# 1255 2013-11-07 14:43:35Z raasch
51	# further adjustments for lccrayb remote access
52	#
53	# 1241 2013-10-30 11:36:58Z heinze
54	# Enable use of nudging input and input of large scale forcing from
55	# external files
56	#
57	# 1229 2013-09-20 06:55:19Z raasch
58	# further adjustments for lccrayb
59	#
60	# 1224 2013-09-16 07:27:23Z raasch
61	# first adjustments for lccrayb
62	#
63	# 1210 2013-08-14 10:58:20Z raasch
64	# fftw support added
65	#
66	# 1201 2013-07-10 16:17:59Z witha
67	# adjustments for Forwind cluster (lcflow)
68	#
69	# 1199 2013-07-05 14:52:22Z raasch
70	# adjustments for CSC Helsinki (lccrayf),
71	# executables for batch jobs can be created in advance, in order to avoid calling
72	# the compiler within the batch job (only works if batch jobs are submitted on
73	# local host)
74	#
75	# 1190 2013-06-25 09:39:21Z heinze
76	# enable use of automatic restarts for ibmh
77	# use of cluster/express queue enabled (ibmh)
78	#
79	# 1124 2013-04-09 15:46:52Z raasch
80	# variable "memory" is exported via typeset option -x, because otherwise an unknown
81	# side effect may lead to data loss while getopts is reading the script-option arguments
82	#
83	# 1122 2013-04-09 08:37:16Z heinze
84	# Bugfix: change type of variable last_char
85	#
86	# 1119 2013-04-05 15:11:19Z raasch
87	# Bugfix for setting -T option for subjob
88	#
89	# 1108 2013-03-05 07:03:32Z raasch
90	# bugfix for coupled runs on lckyut/lckyuh
91	#
92	# 1106 2013-03-04 05:31:38Z raasch
93	# --stdin argument for mpiexec on lckyuh
94	# -y and -Y settings output to header
95	#
96	# 1103 2013-02-20 02:15:53Z raasch
97	# default script runs again under ksh, because of unsolved problems with read
98	# from stdin: when bash script is called from a ksh, message "read error: 0:
99	# Resource temporarily unavailable" appears and script does not stop,
100	# further bash compatibility adjustments,
101	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
102	# on lckyuh, but mrun does not terminate and issues a warning instead
103	#
104	# 1101 2013-02-17 10:20:21Z raasch
105	# script now running under bash instead of ksh, which required small adjustments
106	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
107	# read from stdin),
108	# cross compilername on lckyuh compute nodes replaced by real compiler name
109	#
110	# 1099 2013-02-10 01:47:43Z raasch
111	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
112	# and for Forwind cluster (lcflow)
113	# small further adjustments for lckyut
114	#
115	# 1094 2013-02-03 01:52:12Z raasch
116	# explicit ssh/scp port can be set in config file with environment variable
117	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
118	# decalpha parts (yonsei) removed
119	#
120	# 2013-02-02 07:06:13Z raasch
121	# adjustments for Kyushu-University computing center (lckyut - tatara)
122	#
123	# 1083 2013-01-04 10:22:09Z maronga
124	# bugfix in parameter file check (read %cpp_options was missing)
125	#
126	# 1069 2012-11-28 16:18:43Z maronga
127	# bugfix: coupling mode was always set to mpi2, typos removed
128	#
129	# 1058 2012-11-21 07:00:35Z raasch
130	# Intel inspector (inspxe) is given the number of PEs instead of the number of
131	# nodes
132	#
133	# 1046 2012-11-09 14:38:45Z maronga
134	# code put under GPL (PALM 3.9)
135	#
136	# 21/03/94 - Siggi - first version finished
137	# 03/03/94 - Siggi - script development started
138	#
139	#--------------------------------------------------------------------------------#
140	# mrun - script for running PALM jobs
141	#--------------------------------------------------------------------------------#
142
143
144
145	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
146
147	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
148	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
149	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
150
151	AddFilenames=""
152	additional_conditions=""
153	add_source_path=""
154	afname=""
155	archive_save=true
156	archive_system=none
157	check_namelist_files=true
158	combine_plot_fields=true
159	compiler_name=""
160	cond1=""
161	cond2=""
162	config_file=.mrun.config
163	coupled_dist=""
164	coupled_mode="mpi1"
165	cpp_opts=""
166	cpp_options=""
167	cpumax=0
168	cpurest=0
169	create_executable_for_batch=false
170	delete_temporary_catalog=true
171	do_batch=false
172	do_compile=true
173	do_remote=false
174	do_stagein=true
175	do_stageout=true
176	do_trace=false
177	email_notification="none"
178	exclude=""
179	executable=""
180	execution_error=false
181	fftw_inc=""
182	fftw_lib=""
183	fftw_support=false
184	fimm=false
185	fname=test
186	fromhost=""
187	global_revision=""
188	group_number=none
189	host=""
190	host_file=""
191	hp=""
192	ignore_archive_error=false
193	input_list=""
194	interpreted_config_file=""
195	job_catalog="~/job_queue"
196	job_on_file=""
197	keep_data_from_previous_run=false
198	link_local_input=false
199	link_local_output=false
200	localhost_realname=$(hostname)
201	local_compile=false
202	local_dvrserver_running=.FALSE.
203	locat=normal
204	mainprog=""
205	makefile=""
206	max_par_io_str=""
207	mc=$0
208	while [[ $(echo $mc \| grep -c "/") != 0 ]]
209	do
210	mc=`echo $mc \| cut -f2- -d"/"`
211	done
212	module_calls=""
213	mrun_script_name=$mc
214	netcdf_inc=""
215	netcdf_lib=""
216	netcdf_support=false
217	node_usage=default
218	numprocs=""
219	numprocs_atmos=0
220	numprocs_ocean=0
221	OOPT=""
222	openmp=false
223	output_list=""
224	package_list=""
225	punkte="..........................................................."
226	queue=none
227	read_from_config=""
228	restart_run=false
229	if [[ `hostname` = rte10 ]]
230	then
231	return_addres=133.5.185.60
232	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
233	elif [[ `hostname` = climate0 ]]
234	then
235	return_addres=165.132.26.68
236	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
237	elif [[ `hostname` = urban00 ]]
238	then
239	return_addres=147.46.30.151
240	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
241	else
242	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
243	fi
244	return_password=""
245	return_username=$LOGNAME
246	remotecall=false
247	remote_username=""
248	run_coupled_model=false
249	run_mode=""
250	scirocco=false
251	store_on_archive_system=false
252	striche=" ----------------------------------------------------------------------------"
253	silent=false
254	source_list=""
255	source_path=SOURCE
256	tasks_per_node=""
257	threads_per_task=1
258	tmpcreate=false
259	tmp_data_catalog=""
260	transfer_problems=false
261	usern=$LOGNAME
262	use_openmp=false
263	version="MRUN 2.0 Rev$Rev: 1282 $"
264	working_directory=`pwd`
265	TOPT=""
266	XOPT=""
267	zeit=$( date \| cut -c 12-19 )
268
269	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
270	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
271	# effect may cause data loss when getopts is reading the
272	# script-option arguments
273	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes remaining_pes sekunden tp1
274
275
276
277
278	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
279	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
280
281	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
282	# EXPORTIERT WERDEN
283	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
284	export group_number input_list numprocs output_list queue run_mode
285
286
287
288	# FEHLERBEHANDLUNG
289	# BEI EXIT:
290	trap 'rm -rf $working_directory/tmp_mrun
291	if [[ $locat != localhost ]]
292	then
293	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
294	# then
295	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
296	#MRUN-calls on $localhost
297	#
298	#date and time user localhost remotehost termination mrun-command
299	#--------------------------------------------------------------------------------------------------------------------
300	#%STATEND%
301	# chmod 666 ${mrun_path}/statistik/mrun_statistik
302	# fi
303	#
304	# # EINTRAG IN DIE STATISTIK-DATEI
305	# string1=`date` #-L35
306	# string2=$usern #-L12
307	# string3=$localhost_realname #-L12
308	# string4=$host #-L12
309	# string5=$locat #-L12
310	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
311	# then
312	# if [[ $do_batch = true ]]
313	# then
314	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
315	# else
316	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
317	# fi
318	# fi
319	echo " " > /dev/null
320	fi
321
322	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
323	then
324
325	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
326	(( i = 0 ))
327	while (( i < iec ))
328	do
329	(( i = i + 1 ))
330	printf "\n *** Execution of ERROR-command:\n"
331	printf " >>> ${err_command[$i]}\n"
332	eval ${err_command[$i]}
333	done
334	if [[ -n $interpreted_config_file ]]
335	then
336	rm -rf $interpreted_config_file
337	fi
338	if [[ -n .mrun_environment ]]
339	then
340	rm -rf .mrun_environment
341	fi
342	if [[ $tmpcreate = true ]]
343	then
344	printf "\n *** Contents of \"$TEMPDIR\":\n"
345	ls -al; cd
346	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
347	fi
348	if [[ "$dvrserver_id" != "" ]]
349	then
350	echo "+++ killing dvrserver_id=$dvrserver_id"
351	kill $dvrserver_id
352	fi
353	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
354	then
355	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
356	fi
357	printf "\n\n+++ MRUN killed \n\n"
358	elif [[ $locat != control_c ]]
359	then
360	printf "\n\n --> all actions finished\n\n"
361	printf " Bye, bye $usern !!\n\n"
362	fi' exit
363
364
365	# BEI TERMINAL-BREAK:
366	trap 'rm -rf $working_directory/tmp_mrun
367	rm -rf $working_directory/tmp_check_namelist_files
368	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
369	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
370	then
371	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
372	fi
373	if [[ "$dvrserver_id" != "" ]]
374	then
375	echo "+++ killing dvrserver_id=$dvrserver_id"
376	kill $dvrserver_id
377	fi
378	printf "\n+++ MRUN killed by \"^C\" \n\n"
379	locat=control_c
380	exit
381	' 2
382
383
384	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
385	# BEEN SET
386	if [[ "$PALM_BIN" = "" ]]
387	then
388	printf "\n +++ environment variable PALM_BIN has not been set"
389	printf "\n please set it to the directory where the PALM scripts are located"
390	locat=palm_bin; exit
391	fi
392	export PATH=$PALM_BIN:$PATH
393
394
395
396	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
397	# FUER FOLGEJOBS BENOETIGT WIRD
398	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
399	do
400	case $option in
401	(a) afname=$OPTARG;;
402	(A) store_on_archive_system=true; mc="$mc -A";;
403	(b) do_batch=true; mc="$mc -b";;
404	(B) delete_temporary_catalog=false; mc="$mc -B";;
405	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
406	(C) restart_run=true; mc="$mc -C";;
407	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
408	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
409	(F) job_on_file="-D"; mc="$mc -F";;
410	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
411	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
412	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
413	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
414	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
415	(I) ignore_archive_error=true; mc="$mc -I";;
416	(k) keep_data_from_previous_run=true; mc="$mc -k";;
417	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
418	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
419	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
420	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
421	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
422	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
423	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
424	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
425	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
426	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
427	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
428	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
429	(S) read_from_config=false; mc="$mc -S";;
430	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
431	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
432	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
433	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
434	(v) silent=true; mc="$mc -v";;
435	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
436	(x) do_trace=true;set -x; mc="$mc -x";;
437	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
438	(y) ocean_file_appendix=true; mc="$mc -y";;
439	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
440	(z) check_namelist_files=false; mc="$mc -z";;
441	(Z) combine_plot_fields=false; mc="$mc -Z";;
442	(\?) printf "\n +++ unknown option $OPTARG \n"
443	printf "\n --> type \"$0 ?\" for available options \n"
444	locat=parameter;exit;;
445	esac
446	done
447
448
449	# EVTL. POSITIONSPARAMETER EINLESEN
450	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
451	(( to_shift = $OPTIND - 1 ))
452	shift $to_shift
453
454	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
455	if [[ "$1" = "?" ]]
456	then
457	(printf "\n *** mrun can be called as follows:\n"
458	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
459	printf "\n Description of available options:\n"
460	printf "\n Option Description Default-Value"
461	printf "\n -a base name of input files equiv. -d"
462	printf "\n -A archiving when using file-attribute fl"
463	printf "\n -b batch-job on local machine ---"
464	printf "\n -B do not delete temporary directory at end ---"
465	printf "\n -c configuration file .mrun.config"
466	printf "\n -d base name of files attached to program test"
467	printf "\n -D preprocessor(cpp)-directives \"\" "
468	printf "\n -F create remote job file only ---"
469	printf "\n -h execution host $localhost_realname"
470	printf "\n -i INPUT control list \"\" "
471	printf "\n -I archiving errors of previous batch-jobs"
472	printf "\n will be ignored"
473	printf "\n -k keep data from previous run"
474	printf "\n -K additional conditions for controling"
475	printf "\n usage of conditional code and"
476	printf "\n env-variables in configuration file \"\" "
477	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
478	printf "\n -M Makefile name Makefile"
479	printf "\n -n node usage (shared/not_shared) depending on -h"
480	printf "\n -o OUTPUT control list \"\" "
481	printf "\n -O use OpenMP ---"
482	printf "\n -p software package list \"\" "
483	printf "\n -q queue \"$queue\" "
484	printf "\n -r run control list (combines -i -o) \"\" "
485	printf "\n -s filenames of routines to be compiled \"\" "
486	printf "\n must end with .f, .f90, .F, or .c !"
487	printf "\n use \"..\" for more than one file and wildcards"
488	printf "\n -s LM compiles all locally modified files"
489	printf "\n -S config file interpreted by shellscript ---"
490	printf "\n -t allowed cpu-time in seconds (batch) 0"
491	printf "\n -T tasks per node depending on -h"
492	printf "\n -u username on remote machine \"\" "
493	printf "\n -v no prompt for confirmation ---"
494	printf "\n -w maximum parallel io streams as given by -X"
495	printf "\n -x tracing of mrun for debug purposes ---"
496	printf "\n -X # of processors (on parallel machines) 1"
497	printf "\n -y add appendix \"_O\" to all local output"
498	printf "\n files (ocean precursor runs followed by"
499	printf "\n coupled atmosphere-ocean runs) ---"
500	printf "\n -Y run coupled model, \"#1 #2\" with"
501	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
502	printf "\n -z disable a priori parameter file check ---"
503	printf "\n -Z skip combine_plot_fields at the end of "
504	printf "\n the simulation ---"
505	printf "\n "
506	printf "\n Possible values of positional parameter <modus>:"
507	printf "\n \"?\" - this outline \n\n") \| more
508	exit
509	elif [[ "$1" != "" ]]
510	then
511	printf "\n +++ positional parameter $1 unknown \n"
512	locat=parameter; exit
513	fi
514
515
516
517	# KURZE STARTMELDUNG
518	printf "\n*** $version "
519	printf "\n will be executed. Please wait ..."
520
521
522
523	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
524	if [[ ! -f $config_file ]]
525	then
526	printf "\n\n +++ configuration file: "
527	printf "\n $config_file"
528	printf "\n does not exist"
529	locat=connect; exit
530	fi
531
532
533	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
534	line=""
535	grep "%host_identifier" $config_file > tmp_mrun
536	while read line
537	do
538	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
539	then
540	HOSTNAME=`echo $line \| cut -d" " -s -f2`
541	host_identifier=`echo $line \| cut -d" " -s -f3`
542	if [[ $localhost_realname = $HOSTNAME ]]
543	then
544	localhost=$host_identifier
545	break
546	fi
547	fi
548	done < tmp_mrun
549
550	if [[ "$localhost" = "" ]]
551	then
552	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
553	printf "\n for local host \"$localhost_realname\"."
554	printf "\n Please add line"
555	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
556	printf "\n to the configuration file."
557	locat=localhost; exit
558	fi
559
560
561	# HOSTSPEZIFISCHE VARIABLEN SETZEN
562	case $localhost_realname in
563	(r1\|r2\|h01\|b01) archive_system=tivoli;;
564	(cs*) archive_system=ut;;
565	(fimm.bccs.uib.no) fimm=true;;
566	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
567	(scirocco) scirocco=true;;
568	esac
569
570
571
572	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
573	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
574	[[ "$afname" = "" ]] && afname=$fname
575
576
577	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
578	if [[ "$run_mode" != "" ]]
579	then
580	input_list="$input_list $run_mode"
581	output_list="$output_list $run_mode"
582	fi
583
584
585	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
586	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
587	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
588	# STARTET)
589	if [[ "$fromhost" = "" ]]
590	then
591	fromhost=$localhost
592	fi
593
594
595	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
596	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
597	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
598	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
599	if [[ -n $host && "$host" != $localhost ]]
600	then
601	do_batch=true
602	do_remote=true
603	case $host in
604	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
605	(*) printf "\n"
606	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
607	printf "\n is not available"
608	locat=nqs; (( iec = 0 )); exit;;
609	esac
610	else
611	host=$localhost
612	fi
613
614
615	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
616	if [[ -n $additional_conditions ]]
617	then
618	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
619	cond1=`echo $additional_conditions \| cut -d" " -f1`
620	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
621	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
622	if [[ -n $dummy ]]
623	then
624	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
625	locat=options; exit
626	fi
627	block=_$cond1
628	[[ -n $cond2 ]] && block=${block}_$cond2
629	fi
630
631
632	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
633	if [[ $run_coupled_model = true ]]
634	then
635
636	if [[ -n $coupled_dist ]]
637	then
638
639	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
640	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
641
642	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
643	then
644
645	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
646	printf "\n PEs (total) : $numprocs"
647	printf "\n PEs (atmosphere): $numprocs_atmos"
648	printf "\n PEs (ocean) : $numprocs_ocean"
649	locat=coupling; exit
650
651	fi
652
653	else
654
655	(( numprocs_ocean = $numprocs / 2 ))
656	(( numprocs_atmos = $numprocs / 2 ))
657
658	fi
659	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
660
661	# GET coupled_mode FROM THE CONFIG FILE
662	line=""
663	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
664	while read line
665	do
666	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
667	then
668	coupled_mode="mpi2"
669	fi
670	done < tmp_mrun
671
672	fi
673
674
675	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
676	# ARCHIVIERUNG FEHLGESCHLAGEN IST
677	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
678	then
679	if [[ $ignore_archive_error = false ]]
680	then
681	printf "\n +++ data archiving of previous run failed"
682	printf "\n see directory \~/job_queue on remote machine"
683	locat=archive; exit
684	else
685	printf "\n +++ warning: data archiving in a previous run failed"
686	printf "\n MRUN continues, trying to get backup copy"
687	fi
688	fi
689
690
691	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
692	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
693	mrun_memory=$memory
694	mrun_group_number=$group_number
695	mrun_cpumax=$cpumax
696	mrun_numprocs=$numprocs
697
698
699	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
700	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
701	if [[ "$read_from_config" = false ]]
702	then
703
704	[[ $silent = false ]] && printf "\n Reading the configuration file... "
705	while read zeile
706	do
707	[[ $silent = false ]] && printf "."
708
709
710	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
711	# ERSETZEN
712	eval zeile=\"$zeile\"
713
714
715	# INTERPRETATION DER ZEILE
716	if [[ "$(echo $zeile)" = "" ]]
717	then
718	# LEERZEILE, KEINE AKTION
719	continue
720
721	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
722	then
723
724	# ZEILE IST KOMMENTARZEILE
725	true
726
727	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
728	then
729
730	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
731	zeile=$(echo $zeile \| cut -c2-)
732	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
733	var=`echo $zeile \| cut -d" " -f1`
734	value=`echo $zeile \| cut -d" " -s -f2`
735	for_host=`echo $zeile \| cut -d" " -s -f3`
736	for_cond1=`echo $zeile \| cut -d" " -s -f4`
737	for_cond2=`echo $zeile \| cut -d" " -s -f5`
738
739	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
740	then
741
742	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
743	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
744	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
745
746
747	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
748	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
749	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
750	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
751	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
752	# KONFIGURATIONSDATEI
753	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
754	then
755	eval $var=\$value
756
757	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
758	if [[ $do_trace = true ]]
759	then
760	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
761	fi
762	fi
763
764	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
765	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
766	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
767	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
768	if [[ $var = host ]]
769	then
770	if [[ -n $host && "$host" != $localhost ]]
771	then
772	do_batch=true
773	do_remote=true
774	case $host in
775	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
776	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
777	printf "\n is not available"
778	locat=nqs; exit;;
779	esac
780	else
781	host=$localhost
782	fi
783	fi
784
785	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
786	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
787	# DEN PROGRAMMEN BENOETIGT WERDEN
788	export $var
789	fi
790
791
792
793
794	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
795	then
796
797	# ZEILE DEFINIERT ERROR-KOMMANDO
798	(( iec = iec + 1 ))
799	zeile=$(echo $zeile \| cut -c4-)
800	err_command[$iec]="$zeile"
801
802	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
803	then
804
805	# ZEILE DEFINIERT INPUT-KOMMANDO
806	(( iic = iic + 1 ))
807	zeile=$(echo $zeile \| cut -c4-)
808	in_command[$iic]="$zeile"
809
810	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
811	then
812
813	# ZEILE DEFINIERT OUTPUT-KOMMANDO
814	(( ioc = ioc + 1 ))
815	zeile=$(echo $zeile \| cut -c4-)
816	out_command[$ioc]="$zeile"
817
818	else
819
820	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
821	# s2a: in/out - Feld
822	# s2b: loc - Feld (optional)
823	# s2c: tr/ar - Feld (optional)
824	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
825	s1=`echo $zeile \| cut -d" " -f1`
826	s2=`echo $zeile \| cut -d" " -s -f2`
827	s2a=$(echo $s2 \| cut -d":" -f1)
828	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
829	then
830	s2b=""
831	s2c=""
832	else
833	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
834	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
835	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
836	fi
837	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
838	s3=`echo $zeile \| cut -d" " -f3`
839	s4=`echo $zeile \| cut -d" " -s -f4`
840	s5=`echo $zeile \| cut -d" " -s -f5`
841	s6=`echo $zeile \| cut -d" " -s -f6`
842
843
844	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
845	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
846	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
847	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
848	# HANDEN SEIN MUSS (D.H. s2b = loc)
849	IFSALT="$IFS"; IFS="$IFS:"
850	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
851	then
852	found=false
853	for actual in $input_list
854	do
855	for formal in $s3
856	do
857	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
858	done
859	done
860	if [[ $found = true ]]
861	then
862	(( iin = iin + 1 ))
863	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
864	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
865	extin[$iin]=$s6
866	fi
867	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
868	then
869	found=false
870	for actual in $output_list
871	do
872	for formal in $s3
873	do
874	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
875	done
876	done
877	if [[ $found = true ]]
878	then
879	(( iout = iout + 1 ))
880	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
881	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
882	fi
883	elif [[ "$s2a" != in && "$s2a" != out ]]
884	then
885	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
886	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
887	locat=connect; exit
888	fi
889	IFS="$IFSALT"
890	fi
891	done < $config_file
892
893	else
894
895
896	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
897	[[ $silent = false ]] && printf "..."
898	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
899	export interpreted_config_file=.icf.$RANDOM
900
901
902
903	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
904	# VERFUEGUNG STELLEN
905	cat > .mrun_environment << %%END%%
906	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
907	config_file = '$config_file', do_remote = '$do_remote',
908	do_trace = '$do_trace', host = '$host',
909	input_list = '$input_list', icf = '$interpreted_config_file',
910	localhost = '$localhost', output_list = '$output_list' /
911
912	%%END%%
913
914	if [[ $localhost_realname = "sx-fep" ]]
915	then
916	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
917	else
918
919	if [[ "$host" != $localhost ]]
920	then
921
922	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
923	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
924	if [[ $? != 0 ]]
925	then
926	printf "\n\n +++ no interpret_config found"
927	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
928	locat=interpret_config; exit
929	fi
930	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
931	$interpret_config_executable
932
933	else
934
935	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
936	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
937	then
938	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
939	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
940	locat=interpret_config; exit
941	else
942	interpret_config${block}.x
943	fi
944
945	fi
946	fi
947	rm .mrun_environment
948
949
950	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
951	chmod u+x $interpreted_config_file
952	export PATH=$PATH:.
953	. $interpreted_config_file
954	rm $interpreted_config_file
955
956	fi
957
958
959	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
960	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
961	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
962	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
963	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
964	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
965	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
966
967
968	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
969	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
970	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
971	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
972	if [[ "$SOURCES_COMPLETE" = "" ]]
973	then
974
975	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
976	# VEREINBART WURDE
977	source_path=""
978	line=""
979	grep "%source_path" $config_file > tmp_mrun
980	while read line
981	do
982	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
983	then
984	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
985	then
986	global_source_path=`echo $line \| cut -d" " -f2`
987	fi
988	fi
989	done < tmp_mrun
990
991	line=""
992	found=false
993	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
994	while read line
995	do
996	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
997	then
998	if [[ $found = true ]]
999	then
1000	printf "\n\n +++ more than one source path found in configuration file"
1001	printf "\n for local host \"$localhost\" "
1002	locat=source_path; exit
1003	fi
1004	source_path=`echo $line \| cut -d" " -f2`
1005	found=true
1006	fi
1007	done < tmp_mrun
1008	rm tmp_mrun
1009
1010	if [[ "$source_path" = "" ]]
1011	then
1012	if [[ "$global_source_path" != "" ]]
1013	then
1014	source_path=$global_source_path
1015	else
1016	printf "\n\n +++ no source path found in configuration file"
1017	printf "\n for local host \"$localhost\" "
1018	locat=source_path; exit
1019	fi
1020	fi
1021	eval source_path=$source_path
1022
1023	if [[ ! -d $source_path ]]
1024	then
1025	printf "\n\n +++ source path \"$source_path\" on local host"
1026	printf "\n \"$localhost\" does not exist"
1027	locat=source_path; exit
1028	fi
1029
1030	fi
1031
1032
1033	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1034	# DURCH OPTION -G MITGETEILT)
1035	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1036	then
1037	global_revision=`svnversion $source_path 2>/dev/null`
1038	global_revision="Rev: $global_revision"
1039	fi
1040
1041
1042	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1043	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1044	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1045	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1046	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1047	if [[ -n $host && "$host" != $localhost ]]
1048	then
1049	do_batch=true
1050	do_remote=true
1051	case $host in
1052	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1053	(*) printf "\n"
1054	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1055	printf "\n is not available"
1056	locat=nqs; (( iec = 0 )); exit;;
1057	esac
1058	else
1059	host=$localhost
1060	fi
1061
1062
1063	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1064	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1065	then
1066
1067	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1068	if [[ ! -n $numprocs ]]
1069	then
1070	printf "\n"
1071	printf "\n +++ option \"-K parallel\" requires additional specification"
1072	printf "\n of the number of processors to be used by"
1073	printf "\n mrun-option \"-X\" or by environment-variable"
1074	printf "\n \"numprocs\" in the configuration file"
1075	locat=numprocs; (( iec = 0 )); exit
1076	fi
1077
1078	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1079	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1080	# GESAMTPROZESSORANZAHL IST
1081	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1082	then
1083	printf "\n"
1084	printf "\n +++ option \"-T\" (tasks per node) is missing"
1085	printf "\n set -T option or define tasks_per_node in the config file"
1086	locat=tasks_per_node; (( iec = 0 )); exit
1087	fi
1088
1089	if (( numprocs < tasks_per_node ))
1090	then
1091	printf "\n"
1092	printf "\n +++ tasks per node (-T) cannot exceed total number of processors (-X)"
1093	printf "\n given values: -T $tasks_per_node -X $numprocs"
1094	locat=tasks_per_node; (( iec = 0 )); exit
1095	fi
1096
1097	if [[ $host != lcflow && $host != lcxt5m ]]
1098	then
1099	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1100	(( ival = $tasks_per_node ))
1101	(( pes = numprocs ))
1102	(( ii = pes / ival ))
1103	(( remaining_pes = pes - ii * ival ))
1104	if (( remaining_pes > 0 ))
1105	then
1106	printf "\n"
1107	printf "\n +++ WARNING: tasks per node (option \"-T\") is not an integral"
1108	printf "\n divisor of the total number of processors (option \"-X\")"
1109	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1110	printf "\n One of the nodes is filled with $remaining_pes instead of $tasks_per_node tasks"
1111	(( nodes = nodes + 1 ))
1112	fi
1113	fi
1114
1115
1116	# IBMY HAT NUR EINEN KNOTEN
1117	if [[ $host = ibmy ]]
1118	then
1119	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1120	then
1121	printf "\n"
1122	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1123	printf "\n total number of processors (option \"-X\")"
1124	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1125	locat=tasks_per_node; (( iec = 0 )); exit
1126	fi
1127	fi
1128
1129
1130	# SETTINGS FOR SUBJOB-COMMAND
1131	OOPT="-O $threads_per_task"
1132
1133	# GESAMTZAHL DER KNOTEN BESTIMMEN
1134	if [[ "$tasks_per_node" != "" ]]
1135	then
1136	TOPT="-T $tasks_per_node"
1137	fi
1138
1139	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1140	# SETZEN
1141	if [[ $node_usage = default ]]
1142	then
1143	if [[ $host = ibms ]]
1144	then
1145	node_usage=shared
1146	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1147	then
1148	node_usage=singlejob
1149	else
1150	node_usage=not_shared
1151	fi
1152	fi
1153
1154	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1155	then
1156	printf "\n"
1157	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1158	printf "\n \"shared\" or \"not_shared\""
1159	locat=tasks_per_node; (( iec = 0 )); exit
1160	fi
1161
1162	fi
1163
1164	# PRUEFEN, OB HOSTFILE EXISTIERT
1165	if [[ -n $hostfile ]]
1166	then
1167	if [[ ! -f $hostfile ]]
1168	then
1169	printf "\n"
1170	printf "\n +++ hostfile \"$hostfile\" does not exist"
1171	locat=hostfile; exit
1172	fi
1173	fi
1174
1175	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1176	if [[ $host = ibmy && $do_remote = false ]]
1177	then
1178	if [[ ! -f $HOME/.rhosts ]]
1179	then
1180	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1181	printf "\n\n *** file:"
1182	printf "\n $HOME/.rhosts"
1183	printf "\n was created\n"
1184	fi
1185	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1186	then
1187	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1188	printf "\n\n *** file:"
1189	printf "\n $HOME/.rhosts"
1190	printf "\n was extended by the name of the current host\n"
1191	fi
1192	fi
1193
1194
1195	# Set default value for the maximum number of parallel io streams
1196	if [[ "$maximum_parallel_io_streams" = "" ]]
1197	then
1198	maximum_parallel_io_streams=$numprocs
1199	fi
1200
1201
1202	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1203	if [[ "$scp_port" != "" ]]
1204	then
1205	PORTOPT="-P $scp_port"
1206	SSH_PORTOPT="-p $scp_port"
1207	fi
1208
1209
1210	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1211	if [[ $queue = none ]]
1212	then
1213	case $host in
1214	(ibmh) queue=cluster;;
1215	(ibmkisti) queue=class.32plus;;
1216	(ibmy) queue=parallel;;
1217	(lckiaps) queue=normal;;
1218	(lckyoto) queue=ph;;
1219	(lckyuh) queue=fx-single;;
1220	(lckyut) queue=cx-single;;
1221	(lcsgib) queue=testq;;
1222	(lcsgih) queue=testq;;
1223	(lctit) queue=S;;
1224	(nech) queue=none;;
1225	(necriam) queue=SP;;
1226	(unics) queue=unics;;
1227	esac
1228	fi
1229
1230
1231	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1232	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1233	# ERMITTELN
1234	(( i = 0 ))
1235	while (( i < iin ))
1236	do
1237	(( i = i + 1 ))
1238	(( maxcycle = 0 ))
1239
1240	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1241	if [[ "${actionin[$i]}" = di ]]
1242	then
1243	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1244	# REM-MASCHINE AUSWERTEN
1245	eval filename=${pathin[$i]}/${endin[$i]}
1246	else
1247	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1248	# REM-MASCHINE AUSWERTEN
1249	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1250	fi
1251	eval pathname=${pathin[$i]}
1252
1253	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1254	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1255	then
1256	filename_input=$filename
1257	fi
1258
1259	# PRUEFEN AUF VORHANDENSEIN
1260	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1261	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1262	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1263	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1264	then
1265	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1266	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1267	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1268	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1269	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1270	if [[ "${transin[$i]}" != "locopt" ]]
1271	then
1272	printf "\n\n +++ INPUT-file: "
1273	if [[ "${extin[$i]}" = "" ]]
1274	then
1275	printf "\n $filename"
1276	else
1277	printf "\n $filename.${extin[$i]}"
1278	fi
1279	printf "\n does not exist\n"
1280	locat=input; exit
1281	else
1282	transin[$i]="unavailable"
1283	fi
1284	else
1285
1286	# ZYKLUSNUMMER FESTSTELLEN
1287	ls -1 -d $filename > filelist 2>/dev/null
1288	ls -1 -d $filename.* >> filelist 2>/dev/null
1289	while read zeile
1290	do
1291	cycle=$(echo $zeile \| cut -f2 -d".")
1292	if [[ "$cycle" = "$zeile" ]]
1293	then
1294	(( icycle = 0 ))
1295	elif [[ "$cycle" = "${extin[$i]}" ]]
1296	then
1297	(( icycle = 0 ))
1298	else
1299	(( icycle = $cycle ))
1300	fi
1301	if (( icycle > maxcycle ))
1302	then
1303	(( maxcycle = icycle ))
1304	file_to_be_used=$zeile
1305	fi
1306	done <filelist
1307	rm filelist
1308
1309	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1310	if (( maxcycle > 0 ))
1311	then
1312	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1313	then
1314	filename=${filename}.$maxcycle.${extin[$i]}
1315	else
1316	filename=${filename}.$maxcycle
1317	fi
1318	else
1319	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1320	then
1321	filename=${filename}.${extin[$i]}
1322	fi
1323	fi
1324
1325	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1326	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1327	absnamein[$i]=$filename
1328	if (( maxcycle > 0 ))
1329	then
1330	if [[ "${actionin[$i]}" = di ]]
1331	then
1332	frelin[$i]=${endin[$i]}.$maxcycle
1333	else
1334	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1335	fi
1336	else
1337	if [[ "${actionin[$i]}" = di ]]
1338	then
1339	frelin[$i]=${endin[$i]}
1340	else
1341	frelin[$i]=${afname}${endin[$i]}
1342	fi
1343	fi
1344
1345	fi
1346	done
1347
1348	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1349	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1350	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1351	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1352	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1353	(( i = 0 ))
1354	while (( i < iout ))
1355	do
1356	(( i = i + 1 ))
1357	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1358	then
1359	if [[ "${actionout[$i]}" = tr ]]
1360	then
1361	actionout[$i]=""
1362	elif [[ "${actionout[$i]}" = trpe ]]
1363	then
1364	actionout[$i]=pe
1365	elif [[ "${actionout[$i]}" = tra ]]
1366	then
1367	actionout[$i]=a
1368	fi
1369	(( maxcycle = 0 ))
1370	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1371	eval catalogname=${pathout[$i]}
1372	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1373	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1374	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1375	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1376	then
1377
1378	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1379	if cat /dev/null > $filename
1380	then
1381	rm $filename
1382	else
1383
1384	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1385	if [[ ! -d $catalogname ]]
1386	then
1387	if mkdir -p $catalogname
1388	then
1389	printf "\n\n *** directory:"
1390	printf "\n $catalogname"
1391	printf "\n was created\n"
1392	else
1393	printf "\n\n +++ OUTPUT-file:"
1394	printf "\n $filename"
1395	printf "\n cannot be created, because directory does not exist"
1396	printf "\n and cannot be created either"
1397	printf "\n"
1398	locat=output ; exit
1399	fi 2>/dev/null
1400	else
1401	printf "\n\n +++ OUTPUT-file:"
1402	printf "\n $filename"
1403	printf "\n cannot be created, although directory exists"
1404	printf "\n"
1405	locat=output ; exit
1406	fi
1407	fi 2>/dev/null
1408	else
1409
1410	# ZYKLUSNUMMER FESTSTELLEN
1411	ls -1 -d $filename > filelist 2>/dev/null
1412	ls -1 -d $filename.* >> filelist 2>/dev/null
1413	while read zeile
1414	do
1415	cycle=$(echo $zeile \| cut -f2 -d".")
1416	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1417	then
1418	(( icycle = 1 ))
1419	else
1420	(( icycle = $cycle + 1 ))
1421	fi
1422	if (( icycle > maxcycle ))
1423	then
1424	(( maxcycle = icycle ))
1425	fi
1426	done <filelist
1427	rm filelist
1428	fi
1429
1430	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1431	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1432	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1433	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1434	if [[ "${actionout[$i]}" != a ]]
1435	then
1436	if (( maxcycle > 0 ))
1437	then
1438	filename=${filename}.$maxcycle
1439	if cat /dev/null > $filename
1440	then
1441	rm $filename
1442	else
1443	printf "\n +++ OUTPUT-file:"
1444	printf "\n $filename"
1445	printf "\n cannot be created"
1446	locat=output ; exit
1447	fi
1448	fi
1449	else
1450	(( maxcycle = maxcycle - 1 ))
1451	if (( maxcycle > 0 ))
1452	then
1453	filename=${filename}.$maxcycle
1454	fi
1455	fi
1456
1457	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1458	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1459	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1460	pathout[$i]=$filename
1461	if (( maxcycle > 0 ))
1462	then
1463	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1464	else
1465	frelout[$i]=${fname}${endout[$i]}
1466	fi
1467
1468	fi
1469	done
1470
1471
1472	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1473	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1474	then
1475	if [[ "$dvr_inc" = "" ]]
1476	then
1477	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1478	printf "\n This is required for the dvrp_graphics package.\n"
1479	locat=dvr; exit
1480	fi
1481	if [[ "$dvr_lib" = "" ]]
1482	then
1483	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1484	printf "\n This is required for the dvrp_graphics package.\n"
1485	locat=dvr; exit
1486	fi
1487	fi
1488
1489
1490	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1491	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1492	# UEBERSETZT ZU WERDEN)
1493	if [[ "$mainprog" = "" && "$executable" = "" ]]
1494	then
1495	printf "\n +++ neither main program nor executable defined"
1496	locat=source; exit
1497	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1498	then
1499	printf "\n +++ main program as well as executable defined"
1500	locat=source; exit
1501	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1502	then
1503	do_compile=false
1504	fi
1505
1506
1507	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1508	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1509	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1510	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1511	then
1512	rm -rf SOURCES_FOR_RUN_$fname
1513	mkdir SOURCES_FOR_RUN_$fname
1514	fi
1515
1516
1517	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1518	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1519	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1520	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1521	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1522	then
1523
1524	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1525
1526	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1527	then
1528
1529	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1530	source_list=""
1531	cd $source_path
1532
1533
1534	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1535	if [[ ! -d .svn ]]
1536	then
1537	printf "\n\n +++ source directory"
1538	printf "\n \"$source_path\" "
1539	printf "\n is not under control of \"subversion\"."
1540	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1541	fi
1542
1543
1544	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1545	Filenames=""
1546	svn status > tmp_mrun
1547	while read line
1548	do
1549	firstc=`echo $line \| cut -c1`
1550	if [[ $firstc = M \|\| $firstc = "?" ]]
1551	then
1552	Name=`echo "$line" \| cut -c8-`
1553	extension=`echo $Name \| cut -d. -f2`
1554	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1555	then
1556	Filenames="$Filenames "$Name
1557	fi
1558	fi
1559	done < tmp_mrun
1560
1561
1562	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1563	for dateiname in $Filenames
1564	do
1565	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1566	source_list=$source_list"$dateiname "
1567	done
1568
1569	cd - > /dev/null
1570
1571
1572	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1573	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1574	# VORHANDEN
1575	elif [[ "$source_list" != "" && $restart_run != true ]]
1576	then
1577
1578	cd $source_path
1579
1580	for filename in $source_list
1581	do
1582
1583	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1584	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1585	then
1586	printf "\n +++ source code file: $filename"
1587	printf "\n must not contain (\"/\") "
1588	locat=source; exit
1589	fi
1590
1591	if [[ ! -f $filename ]]
1592	then
1593	printf "\n +++ source code file: $filename"
1594	printf "\n does not exist"
1595	locat=source; exit
1596	else
1597	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1598	fi
1599
1600	done
1601
1602	cd - > /dev/null
1603
1604	fi
1605
1606
1607	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1608	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1609	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1610	if [[ $restart_run != true ]]
1611	then
1612
1613	if [[ ! -f "$source_path/$mainprog" ]]
1614	then
1615	printf "\n\n +++ main program: $mainprog"
1616	printf "\n does not exist in source directory"
1617	printf "\n \"$source_path\"\n"
1618	locat=source; exit
1619	else
1620	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1621	then
1622	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1623	source_list=${mainprog}" $source_list"
1624	fi
1625	fi
1626	fi
1627
1628
1629	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1630	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1631	if [[ "$restart_run" != true ]]
1632	then
1633	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1634	if [[ ! -f $makefile ]]
1635	then
1636	printf "\n +++ file \"$makefile\" does not exist"
1637	locat=make; exit
1638	else
1639	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1640	fi
1641	fi
1642
1643
1644	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1645	if [[ $restart_run != true && "$add_source_path" != "" ]]
1646	then
1647
1648	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1649	if [[ ! -d $add_source_path ]]
1650	then
1651	printf "\n\n +++ WARNING: additional source code directory"
1652	printf "\n \"$add_source_path\" "
1653	printf "\n does not exist or is not a directory."
1654	printf "\n No source code will be used from this directory!\n"
1655	add_source_path=""
1656	if [[ $silent == false ]]
1657	then
1658	sleep 3
1659	fi
1660	else
1661
1662	cd $add_source_path
1663	found=false
1664
1665	Names=$(ls -1 *.f90 2>&1)
1666	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1667	Names=$(ls -1 *.F90 2>&1)
1668	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1669	Names=$(ls -1 *.F 2>&1)
1670	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1671	Names=$(ls -1 *.f 2>&1)
1672	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1673	Names=$(ls -1 *.c 2>&1)
1674	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1675
1676	cd - > /dev/null
1677	cd SOURCES_FOR_RUN_$fname
1678
1679	# COPY MAKEFILE IF EXISTING
1680	if [[ -f $add_source_path/Makefile ]]
1681	then
1682	printf "\n\n *** user Makefile from directory"
1683	printf "\n \"$add_source_path\" is used \n"
1684	if [[ $silent == false ]]
1685	then
1686	sleep 1
1687	fi
1688	cp $add_source_path/Makefile .
1689	fi
1690
1691	for dateiname in $AddFilenames
1692	do
1693	if [[ -f $dateiname ]]
1694	then
1695	printf "\n +++ source code file \"$dateiname\" found in additional"
1696	printf "\n source code directory \"$add_source_path\" "
1697	printf "\n but was also given with option \"-s\" which means that it should be taken"
1698	printf "\n from directory \"$source_path\"."
1699	locat=source; exit
1700	fi
1701
1702	cp $add_source_path/$dateiname .
1703	source_list="$source_list $dateiname"
1704
1705	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1706	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1707	then
1708	printf "\n\n +++ user file \"$dateiname\" "
1709	printf "\n is not listed in Makefile \n"
1710	locat=source; exit
1711	else
1712
1713	# Default User-Interface von der Liste entfernen, falls Datei
1714	# ein User-Interface enthaelt
1715	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1716	# then
1717	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1718	# then
1719	# rm -rf user_interface.f90
1720	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1721	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1722	# printf "\n since a user-interface is found in file"
1723	# printf "\n \"$add_source_path/$dateiname\" \n"
1724	# sleep 3
1725	# else
1726	if [[ $found = false ]]
1727	then
1728	found=true
1729	printf "\n\n *** following user file(s) added to the"
1730	printf " files to be translated:\n "
1731	fi
1732	printf "$dateiname "
1733	if [[ $silent == false ]]
1734	then
1735	sleep 0.5
1736	fi
1737
1738	fi
1739	done
1740	[[ $found = true ]] && printf "\n"
1741	cd - > /dev/null
1742	fi
1743	fi
1744
1745
1746	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1747	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1748	if [[ $restart_run != true && -n $package_list ]]
1749	then
1750
1751	cd $source_path
1752
1753	for package in $package_list
1754	do
1755
1756	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1757
1758	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1759	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1760	# LIEFERT
1761	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1762
1763
1764	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1765	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1766	for source_list_name in $package_source_list
1767	do
1768	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1769	then
1770
1771	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1772	ending=`echo $source_list_name \| cut -f2 -d.`
1773	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1774	then
1775	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1776	source_list="$source_list $source_list_name"
1777	fi
1778	fi
1779	done
1780	done
1781
1782	cd - > /dev/null
1783	fi
1784
1785
1786	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1787	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1788	# if [[ "$restart_run" != true ]]
1789	# then
1790	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1791	# if [[ ! -f $makefile ]]
1792	# then
1793	# printf "\n +++ file \"$makefile\" does not exist"
1794	# locat=make; exit
1795	# else
1796	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1797	# fi
1798	# fi
1799
1800	fi # do_compile=true
1801
1802
1803	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1804	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1805	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1806	then
1807
1808	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1809	# ZUSAMMENSETZEN
1810	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1811	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1812	then
1813	cpp_options="${cpp_options},-D__ibm=__ibm"
1814	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1815	then
1816	cpp_options="$cpp_options -D__nec"
1817	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1818	then
1819	cpp_options="$cpp_options -D__lc"
1820	else
1821	cpp_options="$cpp_options -D__$localhost"
1822	fi
1823
1824	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1825	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1826	then
1827	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1828	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1829	else
1830	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1831	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1832	fi
1833
1834	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1835	if [[ -n $package_list ]]
1836	then
1837	for package in $package_list
1838	do
1839	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1840	then
1841	if [[ $package != "dvrp_graphics+1PE" ]]
1842	then
1843	cpp_options="${cpp_options},-D__$package=__$package"
1844	else
1845	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1846	export use_seperate_pe_for_dvrp_output=true
1847	fi
1848	else
1849	if [[ $package != "dvrp_graphics+1PE" ]]
1850	then
1851	cpp_options="$cpp_options -D__$package"
1852	else
1853	cpp_options="$cpp_options -D__dvrp_graphics"
1854	export use_seperate_pe_for_dvrp_output=true
1855	fi
1856	fi
1857	done
1858	fi
1859
1860	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1861	if [[ -n $cpp_opts ]]
1862	then
1863	for popts in $cpp_opts
1864	do
1865	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1866	then
1867	cpp_options="${cpp_options},-D__$popts=__$popts"
1868	else
1869	cpp_options="$cpp_options -D__$popts"
1870	fi
1871	done
1872	fi
1873
1874	else
1875
1876
1877	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1878	if [[ $do_remote = false ]]
1879	then
1880	if [[ ! -f $executable ]]
1881	then
1882	printf "\n +++ executable file: $executable"
1883	printf "\n does not exist"
1884	locat=executable; exit
1885	fi
1886	fi
1887	fi
1888
1889
1890	# JOBMODUS FESTSTELLEN
1891	if [[ "$ENVIRONMENT" = BATCH ]]
1892	then
1893	jobmo=BATCH
1894	else
1895	jobmo=INTERACTIVE
1896	fi
1897
1898
1899	# no interactive runs on lctit
1900	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1901	then
1902	printf "\n +++ no interactive runs allowed on host \"$host\" "
1903	printf "\n please submit batch job using mrun option \"-b\" \n"
1904	locat=normal; exit
1905	fi
1906
1907
1908	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1909	# DURCH BENUTZER ANDERWEITIG VEREINBART
1910	if [[ "$compiler_name" = "" ]]
1911	then
1912
1913	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1914	locat=compiler_name; exit
1915
1916	fi
1917
1918
1919	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1920	[[ $localhost = necriam ]] && compiler_name=mpif90
1921
1922
1923
1924	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1925	kennung=$RANDOM
1926	if [[ "$tmp_user_catalog" = "" ]]
1927	then
1928	if [[ $localhost = ibmh ]]
1929	then
1930	tmp_user_catalog=$SCRATCH
1931	elif [[ $localhost = nech ]]
1932	then
1933	tmp_user_catalog=$WRKSHR
1934	else
1935	tmp_user_catalog=/tmp
1936	fi
1937	fi
1938	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1939
1940
1941	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1942	# BESTIMMEN
1943	if [[ "$tmp_data_catalog" = "" ]]
1944	then
1945	if [[ $localhost = nech ]]
1946	then
1947	tmp_data_catalog=$WRKSHR/mrun_restart_data
1948	else
1949	tmp_data_catalog=/tmp/mrun_restart_data
1950	fi
1951	fi
1952
1953
1954	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1955	# ERSETZEN
1956	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1957	then
1958	eval fopts=\"$fopts\"
1959	eval lopts=\"$lopts\"
1960	fi
1961
1962
1963
1964	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1965	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1966	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1967	ROPTS="$ropts"
1968	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1969	# then
1970	XOPT="-X $numprocs"
1971	# fi
1972
1973
1974
1975	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1976	# GRAMM BENOETIGT
1977	done=false
1978	while [[ $done = false ]]
1979	do
1980	cputime=$cpumax
1981	if (( $cputime == 0 ))
1982	then
1983	if [[ $do_batch = true ]]
1984	then
1985	printf "\n +++ cpu-time is undefined"
1986	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1987	printf "\n >>> "
1988	read cputime 1>/dev/null 2>&1
1989	else
1990	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1991	fi
1992	else
1993	done=true
1994	fi
1995	cpumax=$cputime
1996	done
1997
1998	(( minuten = cputime / 60 ))
1999	(( sekunden = cputime - minuten * 60 ))
2000
2001
2002	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2003	if [[ $do_batch = true ]]
2004	then
2005	done=false
2006	while [[ $done = false ]]
2007	do
2008	if (( memory == 0 ))
2009	then
2010	printf "\n +++ memory demand is undefined"
2011	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2012	printf "\n >>> "
2013	read memory 1>/dev/null 2>&1
2014	else
2015	done=true
2016	fi
2017	done
2018	fi
2019
2020
2021	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2022	if [[ $do_remote = true && -z $remote_username ]]
2023	then
2024	while [[ -z $remote_username ]]
2025	do
2026	printf "\n +++ username on remote host \"$host\" is undefined"
2027	printf "\n >>> Please type username:"
2028	printf "\n >>> "
2029	read remote_username
2030	done
2031	mc="$mc -u$remote_username"
2032	fi
2033
2034	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2035	if [[ "$login_init_cmd" != "" ]]
2036	then
2037	export init_cmds="${login_init_cmd};"
2038	fi
2039
2040
2041	# set module load command and export for subjob
2042	if [[ "$modules" != "" ]]
2043	then
2044	if [[ $host = lctit ]]
2045	then
2046	export module_calls=". $modules"
2047	else
2048	export module_calls="module load ${modules};"
2049	fi
2050	fi
2051
2052	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2053	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2054	then
2055	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2056	then
2057	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2058	fi
2059	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2060	# then
2061	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2062	# echo "*** module_calls = $module_calls"
2063	# fi
2064	fi
2065
2066
2067	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2068	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2069	then
2070	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2071	then
2072	mpilib=mpt
2073	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2074	then
2075	mpilib=mvapich
2076	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2077	then
2078	mpilib=impi
2079	fi
2080	fi
2081
2082
2083
2084	###########################################################################
2085	# HEADER-AUSGABE
2086	###########################################################################
2087
2088
2089	calltime=$(date)
2090	printf "\n"
2091	# [[ $silent = false ]] && clear
2092	printf "#------------------------------------------------------------------------# \n"
2093	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2094	printf "\| \| \n"
2095	spalte1="called on:"; spalte2=$localhost_realname
2096	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2097	if [[ $local_compile = false ]]
2098	then
2099	if [[ $do_remote = true ]]
2100	then
2101	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2102	else
2103	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2104	fi
2105	else
2106	spalte1="compiling test only!"; spalte2=""
2107	fi
2108	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2109	if [[ -n $numprocs ]]
2110	then
2111	if [[ $run_coupled_model = false ]]
2112	then
2113	spalte1="number of PEs:"; spalte2=$numprocs
2114	else
2115	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2116	fi
2117	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2118	fi
2119	if [[ -n $tasks_per_node ]]
2120	then
2121	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	if (( remaining_pes > 0 ))
2124	then
2125	spalte1=" "; spalte2="one of the nodes only filled with $remaining_pes tasks"
2126	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2127	fi
2128	fi
2129	if [[ $maximum_parallel_io_streams != $numprocs ]]
2130	then
2131	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2132	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2133	fi
2134	if [[ $use_openmp = true ]]
2135	then
2136	spalte1="threads per task:"; spalte2="$threads_per_task"
2137	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2138	fi
2139	printf "\| \| \n"
2140	if [[ $do_compile = true ]]
2141	then
2142	if [[ "$mopts" != "" ]]
2143	then
2144	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2145	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2146	zeile=$(echo "$mopts" \| cut -c46-)
2147	while [[ "$zeile" != "" ]]
2148	do
2149	spalte1=""
2150	spalte2=$(echo "$zeile" \| cut -c-45)
2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2152	zeile=$(echo "$zeile" \| cut -c46-)
2153	done
2154	fi
2155
2156	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2157	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2158	zeile=$(echo "$cpp_options" \| cut -c46-)
2159	while [[ "$zeile" != "" ]]
2160	do
2161	spalte1=""
2162	spalte2=$(echo "$zeile" \| cut -c-45)
2163	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2164	zeile=$(echo "$zeile" \| cut -c46-)
2165	done
2166
2167	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2168	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2169	zeile=$(echo "$fopts" \| cut -c46-)
2170	while [[ "$zeile" != "" ]]
2171	do
2172	spalte1=""
2173	spalte2=$(echo "$zeile" \| cut -c-45)
2174	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2175	zeile=$(echo "$zeile" \| cut -c46-)
2176	done
2177
2178	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2179	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2180	zeile=$(echo "$lopts" \| cut -c46-)
2181	while [[ "$zeile" != "" ]]
2182	do
2183	spalte1=""
2184	spalte2=$(echo "$zeile" \| cut -c-45)
2185	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2186	zeile=$(echo "$zeile" \| cut -c46-)
2187	done
2188
2189	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2190	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2191	zeile=$(echo "$modules" \| cut -c46-)
2192	while [[ "$zeile" != "" ]]
2193	do
2194	spalte1=""
2195	spalte2=$(echo "$zeile" \| cut -c-45)
2196	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2197	zeile=$(echo "$zeile" \| cut -c46-)
2198	done
2199
2200	spalte1="main program:"; spalte2=$mainprog
2201	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2202	else
2203	spalte1=executable:; spalte2=$executable
2204	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2205	fi
2206	printf "\| \| \n"
2207	spalte1="base name of files:"; spalte2=$fname
2208	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2209	if [[ $fname != $afname ]]
2210	then
2211	spalte1="base name of input files:"; spalte2=$afname
2212	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2213	fi
2214	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2215	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2216	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2217	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2218
2219	if [[ "$ocean_file_appendix" = true ]]
2220	then
2221	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2222	fi
2223
2224	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2225	then
2226	spalte1="memory demand / PE":; spalte2="$memory MB"
2227	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2228	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2229	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2230	fi
2231
2232	if [[ $do_compile = true ]]
2233	then
2234	printf "\| \| \n"
2235	printf "\| Files to be compiled: \| \n"
2236	zeile=$source_list
2237	while [[ "$zeile" != "" ]]
2238	do
2239	linestart=$(echo $zeile \| cut -c-70)
2240	printf "\| %-70s \| \n" "$linestart"
2241	zeile=$(echo "$zeile" \| cut -c71-)
2242	done
2243	fi
2244	printf "#------------------------------------------------------------------------#"
2245
2246
2247
2248	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2249	if [[ $do_trace = true ]]
2250	then
2251	(( i = 0 ))
2252	while (( i < iin ))
2253	do
2254	(( i = i + 1 ))
2255	if (( i == 1 ))
2256	then
2257	printf "\n\n >>> INPUT-file assignments:\n"
2258	fi
2259	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2260	done
2261	(( i = 0 ))
2262	while (( i < iout ))
2263	do
2264	(( i = i + 1 ))
2265	if (( i == 1 ))
2266	then
2267	printf "\n\n >>> OUTPUT-file assignments:\n"
2268	fi
2269	printf "\n ${localout[$i]} : ${pathout[$i]}"
2270	done
2271	(( i = 0 ))
2272	while (( i < iic ))
2273	do
2274	(( i = i + 1 ))
2275	if (( i == 1 ))
2276	then
2277	printf "\n\n >>> INPUT-commands:\n"
2278	fi
2279	printf "\n ${in_command[$i]}"
2280	done
2281	(( i = 0 ))
2282	while (( i < ioc ))
2283	do
2284	(( i = i + 1 ))
2285	if (( i == 1 ))
2286	then
2287	printf "\n\n >>> OUTPUT-commands:\n"
2288	fi
2289	printf "\n ${out_command[$i]}"
2290	done
2291	fi
2292
2293
2294	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2295	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2296	then
2297	antwort=dummy
2298	printf "\n\n"
2299	printf " >>> everything o.k. (y/n) ? "
2300	while read antwort
2301	do
2302	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2303	then
2304	printf " >>> everything o.k. (y/n) ? "
2305	else
2306	break
2307	fi
2308	done
2309	if [[ $antwort = n \|\| $antwort = N ]]
2310	then
2311	locat=user_abort; (( iec = 0 )); exit
2312	fi
2313	if [[ $do_batch = true ]]
2314	then
2315	printf " >>> batch-job will be created and submitted"
2316	else
2317	if [[ $local_compile = false ]]
2318	then
2319	printf " >>> MRUN will now continue to execute on this machine"
2320	else
2321	printf " >>> a test compilation will now be carried out on this machine"
2322	fi
2323	fi
2324	fi
2325
2326
2327	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2328	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2329	check_depository="${working_directory}/trunk/UTIL"
2330	check_sources="${working_directory}/tmp_check_namelist_files"
2331	skip_check=false
2332
2333	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2334	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2335	then
2336	skip_check=true
2337	reason="run on remote host or parameter file check has not been compiled."
2338	fi
2339	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2340	then
2341	skip_check=true
2342	reason="parameter file check has not been compiled."
2343	fi
2344
2345	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2346	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2347	then
2348	skip_check=true
2349	reason="serial run."
2350	fi
2351
2352	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2353	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2354	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2355	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2356	if [[ $check_namelist_files == false ]]
2357	then
2358	skip_check=true
2359	reason="-z option set."
2360	fi
2361
2362	if [[ $fromhost != $localhost ]]
2363	then
2364	skip_check=true
2365	reason="submitting host is local host."
2366	fi
2367
2368	if [[ $run_coupled_model == true ]]
2369	then
2370	skip_check=true
2371	reason="coupled run."
2372	fi
2373
2374	if [[ $restart_run == true ]]
2375	then
2376	skip_check=true
2377	reason="restart run."
2378	fi
2379
2380	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2381	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2382	last_char=`echo $filename_input \| cut -c $last_char_int`
2383	if [[ "$last_char" == "f" ]]
2384	then
2385	skip_check=true
2386	reason="restart run."
2387	fi
2388
2389	if [[ $skip_check == false ]]
2390	then
2391	tmp_check=${working_directory}/tmp_check
2392
2393	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2394	# NOT NECESSARILY REQUIRED
2395	line=""
2396	found=false
2397	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2398	while read line1
2399	do
2400	line="$line1"
2401	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2402	then
2403	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2404	found=true
2405	fi
2406	done < $tmp_check
2407
2408	if [[ $found = false ]]
2409	then
2410	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2411	fi
2412
2413	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2414	# NOT NECESSARILY REQUIRED
2415	line=""
2416	found=false
2417	grep "NUDGING_DATA" $config_file > $tmp_check
2418	while read line1
2419	do
2420	line="$line1"
2421	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2422	then
2423	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2424	found=true
2425	fi
2426	done < $tmp_check
2427
2428	if [[ $found = false ]]
2429	then
2430	printf "\n +++ no NUDGING list entry found in the configuration file."
2431	fi
2432
2433	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2434	# NOT NECESSARILY REQUIRED
2435	line=""
2436	found=false
2437	grep "LSF_DATA" $config_file > $tmp_check
2438	while read line1
2439	do
2440	line="$line1"
2441	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2442	then
2443	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2444	found=true
2445	fi
2446	done < $tmp_check
2447
2448	if [[ $found = false ]]
2449	then
2450	printf "\n +++ no LSF list entry found in the configuration file."
2451	fi
2452
2453	rm -rf ${working_directory}/tmp_check
2454
2455	# CHECK IF THE P3DF FILE MUST BE CHECKED
2456	for item in $input_list
2457	do
2458	if [[ "$item" == "restart" ]]
2459	then
2460	check_restart=1
2461	else
2462	check_restart=0
2463	fi
2464	done
2465
2466	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2467	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2468	then
2469	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2470	locat=check_namelist; exit
2471	fi
2472
2473	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2474	if [[ $check_restart == 1 ]]
2475	then
2476
2477	filenamef="${filename_input}f"
2478	if [[ ! -f $filenamef ]]
2479	then
2480	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2481	check_restart=0
2482	answer=dummy
2483	printf "\n\n"
2484
2485	if [[ $silent == false ]]
2486	then
2487	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2488	do
2489	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2490	read answer
2491	done
2492	if [[ $answer = a \|\| $answer = A ]]
2493	then
2494	printf "\n +++ Aborting...."
2495	locat=normal; exit
2496	fi
2497	fi
2498	else
2499	check_restart=1
2500	fi
2501	fi
2502
2503	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2504	mkdir $check_sources
2505	cd $check_sources
2506
2507
2508	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2509	if [[ -d $add_source_path ]]
2510	then
2511	printf "\n\n *** copying files from $check_depository"
2512	cp $check_depository/check_namelist_files.tar ./
2513
2514	printf "\n\n *** untar of makefile and source files in $check_sources"
2515	tar -xf check_namelist_files.tar > /dev/null 2>&1
2516
2517	printf "\n\n *** adding user code."
2518	cp $add_source_path/* ./
2519	touch check_namelist_files.f90
2520
2521	# GET COMPILER OPTIONS AND PERFORM MAKE
2522	printf "\n\n *** compiling code if necessary...\n"
2523
2524	# workaround for batch jobs on local machine (lcxe6)
2525	if [[ $do_batch == true && $do_remote == false ]]
2526	then
2527	eval $init_cmds
2528	fi
2529
2530	# GET CHECK OPTIONS
2531	line=""
2532	found=false
2533
2534	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2535
2536	while read line1
2537	do
2538
2539	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2540	then
2541	line="$line1"
2542	fi
2543
2544	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2545	then
2546	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2547	line="$line "
2548	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2549	found=true
2550	fi
2551
2552	done < $tmp_check
2553	copts_check="$copts_check -D__check -D__parallel"
2554
2555	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2556
2557	# GET MAKE OUTPUT
2558	if [[ $? != 0 ]]
2559	then
2560	printf "\n +++ error during make."
2561	answer=dummy
2562	printf "\n\n"
2563	if [[ $silent == false ]]
2564	then
2565	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2566	do
2567	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2568	read answer
2569	done
2570	if [[ $answer = a \|\| $answer = A ]]
2571	then
2572	printf "\n +++ Aborting..."
2573	rm -rf $check_sources
2574	locat=normal; exit
2575	else
2576	skip_check=true
2577	fi
2578	else
2579	skip_check=true
2580	fi
2581	fi
2582	else
2583	cp $PALM_BIN/check_namelist_files.x ./
2584	fi
2585
2586	cp $filename_input ./PARIN
2587	if [[ $check_restart == 1 ]]
2588	then
2589	cp $filenamef ./PARINF
2590	fi
2591
2592	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2593	then
2594	printf "\n *** adding topography data"
2595	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2596
2597	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2598	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2599	# WHICH REQUIRE SUFFICIENT MEMORY
2600	ulimit -s unlimited
2601	fi
2602
2603	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2604	then
2605	printf "\n *** adding nudging data"
2606	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2607	fi
2608
2609	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2610	then
2611	printf "\n *** adding large scale forcing data"
2612	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2613	fi
2614
2615	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2616	cat > ENVPAR << %%END%%
2617	&envpar run_identifier = '$fname', host = '$host',
2618	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2619	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2620	maximum_cpu_time_allowed = ${cpumax}.,
2621	revision = '$global_revision',
2622	local_dvrserver_running = $local_dvrserver_running /
2623
2624	%%END%%
2625
2626	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2627	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2628	then
2629	printf "\n +++ WARNING: check_namelist_files.x not found."
2630	answer=dummy
2631	printf "\n\n"
2632
2633	if [[ $silent == false ]]
2634	then
2635	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2636	do
2637	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2638	read answer
2639	done
2640	if [[ $answer = a \|\| $answer = A ]]
2641	then
2642	printf "\n +++ Aborting..."
2643	rm -rf $check_sources
2644	locat=normal; exit
2645	else
2646	printf "\n *** skipping parameter file check."
2647	fi
2648	fi
2649
2650	elif [[ $skip_check == false ]]
2651	then
2652	# STARTING THE PARAMETER FILE CHECK
2653	printf "\n\n *** starting parameter file check..."
2654
2655	# CHECKING THE P3D FILE
2656	printf "\n\n (1) checking $filename_input"
2657	echo "$numprocs 0 0" > VARIN
2658	errors=`./check_namelist_files.x < VARIN 2>&1`
2659
2660	check_error=false
2661	if [[ "$errors" == "" ]]
2662	then
2663	printf " --> o.k."
2664	else
2665	printf " --> failed."
2666	check_error=true
2667	printf "\n\n $errors"
2668	fi
2669
2670	# CHECKING THE PD3F FILE IF NECESSARY
2671	if [[ $check_restart == 1 && $check_error == false ]]
2672	then
2673	printf "\n\n (2) checking $filenamef"
2674
2675	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2676	# IN &INIPAR LIST
2677	found=false
2678	cat PARINF \| while read line
2679	do
2680	line=$(echo $line\|sed 's/ //g')
2681	if [[ $line == "&inipar" ]]
2682	then
2683	start_search=true
2684	fi
2685
2686	if [[ $start_search == true ]]
2687	then
2688	if [[ $line == "initializing_actions='read_restart_data'" ]]
2689	then
2690	found=true
2691	break
2692	fi
2693	fi
2694
2695	if [[ $line == "/" ]]
2696	then
2697	start_search=false
2698	fi
2699
2700	done
2701
2702	if [[ $found = false ]]
2703	then
2704	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2705	printf "\n in &inipar list in $fname$p3df_suffix."
2706	rm -rf $check_sources
2707	locat=check_namelist; exit
2708	fi
2709
2710	# READ max_user_pr FROM FILES
2711	if [[ -f parin_for_check ]]
2712	then
2713	read max_pr_user < parin_for_check
2714	else
2715	max_user_pr=0
2716	fi
2717
2718	echo "$numprocs 1 $max_pr_user" > VARIN
2719	errors=`./check_namelist_files.x < VARIN 2>&1`
2720
2721	if [[ "$errors" == "" ]]
2722	then
2723	printf " --> o.k."
2724	else
2725	printf " --> failed."
2726	check_error=true
2727	printf "\n\n $errors"
2728	fi
2729	fi
2730
2731	# REPORT ERRORS AND CONTINUE/EXIT
2732	if [[ $check_error == true ]]
2733	then
2734	printf "\n +++ errors found in the parameter file!\n"
2735	answer=dummy
2736	printf "\n\n"
2737
2738	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2739	do
2740	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2741	read answer
2742	done
2743
2744	if [[ $answer = a \|\| $answer = A ]]
2745	then
2746	printf "\n +++ Aborting..."
2747	rm -rf $check_sources
2748	locat=normal; exit
2749	fi
2750	else
2751	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2752	fi
2753	rm -rf $check_sources
2754	fi
2755	else
2756	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2757	fi
2758
2759	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2760	rm -rf $check_sources
2761	cd $working_directory
2762
2763
2764	# DETERMINE PATH FOR MAKE DEPOSITORY
2765	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2766	then
2767
2768	line=""
2769	grep "%depository_path" $config_file > tmp_mrun
2770	while read line
2771	do
2772	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2773	then
2774	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2775	then
2776	global_depository_path=`echo $line \| cut -d" " -s -f2`
2777	fi
2778	fi
2779	done < tmp_mrun
2780
2781	line=""
2782	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2783	while read line
2784	do
2785	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2786	then
2787	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2788	then
2789	local_depository_path=`echo $line \| cut -d" " -s -f2`
2790	fi
2791	fi
2792	done < tmp_mrun
2793
2794	if [[ "$local_depository_path" = "" ]]
2795	then
2796	if [[ "$global_depository_path" != "" ]]
2797	then
2798	local_depository_path=$global_depository_path
2799	else
2800	printf "\n\n +++ no depository path found in configuration file"
2801	printf "\n for local host \"$localhost\" "
2802	printf "\n please set \"\%depository_path\" in configuration file\n"
2803	locat=config_file; exit
2804	fi
2805	fi
2806	eval local_depository_path=$local_depository_path
2807	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2808	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2809
2810
2811	basename=`echo $mainprog \| cut -f1 -d"."`
2812	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2813	if [[ ! -f $make_depository ]]
2814	then
2815	printf "\n"
2816	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2817	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2818	fi
2819
2820	fi
2821
2822
2823	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2824	# CHENDE AKTIONEN DURCHGEFUEHRT
2825	if [[ $do_batch = false ]]
2826	then
2827
2828
2829	# TEMPORAEREN KATALOG ERZEUGEN
2830	mkdir -p $TEMPDIR
2831	chmod go+rx $TEMPDIR
2832	tmpcreate=true
2833
2834
2835	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2836	# TEMPORAERES VERZEICHNIS KOPIEREN
2837	if [[ $do_compile = true ]]
2838	then
2839
2840	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2841	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2842	if [[ $localhost = nech ]]
2843	then
2844	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2845	if mkdir -p $TEMPDIR_COMPILE
2846	then
2847	printf "\n *** \"$TEMPDIR_COMPILE\" "
2848	printf "\n is generated as temporary directory for cross compiling\n"
2849	else
2850	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2851	printf "\n needed for cross compilation failed"
2852	locat=compile
2853	exit
2854	fi
2855	else
2856	TEMPDIR_COMPILE=$TEMPDIR
2857	fi
2858
2859	cp $make_depository $TEMPDIR_COMPILE
2860	cd $TEMPDIR_COMPILE
2861	tar -xf $make_depository > /dev/null 2>&1
2862	cd - > /dev/null
2863
2864	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2865	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2866	if [[ $(echo $host \| cut -c1-6) = lccray ]]
2867	then
2868	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2869	else
2870	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2871	fi
2872
2873	else
2874
2875	cp $executable ${TEMPDIR}/a.out
2876
2877	fi
2878
2879
2880	# WECHSEL IN TEMPORAEREN KATALOG
2881	cd $TEMPDIR
2882	printf "\n *** changed to temporary directory: $TEMPDIR"
2883
2884
2885	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2886	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2887	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2888	# ERMITTELN
2889	(( i = 0 ))
2890	while (( i < iout ))
2891	do
2892	(( i = i + 1 ))
2893	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2894	then
2895	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2896	else
2897	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2898	fi
2899	done
2900
2901
2902	# IF REQUIRED, START WITH COMPILING ACTIONS
2903	if [[ $do_compile = true ]]
2904	then
2905
2906
2907	if [[ -f a.out ]]
2908	then
2909
2910	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2911	printf "\n\n\n *** executable a.out found"
2912	printf "\n no compilation required \n"
2913
2914	else
2915
2916	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2917	printf "\n\n\n *** compilation starts \n$striche\n"
2918	printf " *** compilation with make using following options:\n"
2919	printf " make depository: $make_depository"
2920	if [[ "$mopts" != "" ]]
2921	then
2922	printf " make options: $mopts\n"
2923	fi
2924	printf " compilername: $compiler_name\n"
2925	printf " compiler options: $fopts\n"
2926	printf " preprocessor directives: $cpp_options \n"
2927	printf " linker options: $lopts \n"
2928	if [[ "$modules" != "" ]]
2929	then
2930	printf " modules to be load: $modules \n"
2931	fi
2932	printf " source code files: $source_list \n"
2933
2934	if [[ $localhost = nech ]]
2935	then
2936	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2937	cp $TEMPDIR_COMPILE/a.out .
2938	[[ $? != 0 ]] && compile_error=true
2939	rm -rf $TEMPDIR_COMPILE
2940	elif [[ $localhost = ibmh ]]
2941	then
2942	printf " compiler is called via ssh on \"plogin1\" \n"
2943	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2944	[[ ! -f a.out ]] && compile_error=true
2945	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2946	elif [[ $localhost = lcsgib ]]
2947	then
2948	printf " compiler is called via ssh on \"bicegate0\" \n"
2949	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2950	[[ ! -f a.out ]] && compile_error=true
2951	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2952	elif [[ $localhost = lcsgih ]]
2953	then
2954	printf " compiler is called via ssh on \"hicegate0\" \n"
2955	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2956	[[ ! -f a.out ]] && compile_error=true
2957	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2958	elif [[ $localhost = lcflow ]]
2959	then
2960	printf " compiler is called via ssh on \"flow\" \n"
2961	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2962	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
2963	[[ "$check_for_file" = "" ]] && compile_error=true
2964	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2965	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf \|\| $localhost = lccrayh ]]
2966	then
2967	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2968	else
2969	[[ "$init_cmds" != "" ]] && eval $init_cmds
2970	[[ "$module_calls" != "" ]] && eval $module_calls
2971	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2972	fi
2973
2974	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2975	then
2976	printf "\n +++ error occured while compiling or linking"
2977	locat=compile
2978
2979	exit
2980	else
2981	printf "$striche\n *** compilation finished \n"
2982	fi
2983
2984	fi
2985
2986	fi
2987
2988
2989	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2990	if [[ $local_compile = true ]]
2991	then
2992	cd $HOME
2993	rm -rf $TEMPDIR
2994	locat=local_compile; exit
2995	fi
2996
2997
2998	# BEREITSTELLEN DER INPUT-DATEIEN
2999	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
3000	(( i = 0 ))
3001	while (( i < iin ))
3002	do
3003	(( i = i + 1 ))
3004	if (( i == 1 ))
3005	then
3006	printf "\n\n *** providing INPUT-files:\n$striche"
3007	fi
3008
3009
3010	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
3011	if [[ "${transin[$i]}" = unavailable ]]
3012	then
3013	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
3014	then
3015	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3016	printf "\n is not available!"
3017	else
3018	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3019	printf "\n is not available!"
3020	fi
3021	continue
3022	fi
3023
3024	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3025	files_for_pes=false; datentyp=file
3026	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3027	then
3028	files_for_pes=true; datentyp=directory
3029	actionin[$i]=""
3030	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3031	then
3032	actionin[$i]=""
3033	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3034	then
3035	files_for_pes=true; datentyp=directory
3036	actionin[$i]="ar"
3037	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3038	then
3039	actionin[$i]="ar"
3040	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3041	then
3042	files_for_pes=true; datentyp=directory
3043	actionin[$i]="fl"
3044	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3045	then
3046	actionin[$i]="fl"
3047	fi
3048
3049	if [[ $files_for_pes = true ]]
3050	then
3051	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3052	else
3053	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3054	fi
3055
3056	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3057	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3058	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3059	# SERVER ZU HOLEN
3060	if [[ "${actionin[$i]}" = fl ]]
3061	then
3062	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3063	if [[ $files_for_pes = false ]]
3064	then
3065	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3066	then
3067	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3068	got_tmp[$i]=true
3069	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3070	then
3071	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3072	printf "\n *** trying to use backup copy in \"$WORK\" "
3073	cp $WORK/${frelin[$i]} ${localin[$i]}
3074	else
3075	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3076	printf "\n or \"$tmp_data_catalog\" does not exist!"
3077	printf "\n *** trying to get copy from archive"
3078	actionin[$i]=ar
3079	fi
3080	else
3081	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3082	then
3083	mkdir ${localin[$i]}
3084	cd $tmp_data_catalog/${frelin[$i]}
3085	for file in $(ls *)
3086	do
3087	ln $file $TEMPDIR/${localin[$i]}
3088	done
3089	cd $TEMPDIR
3090	got_tmp[$i]=true
3091	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3092	then
3093	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3094	printf "\n *** trying to use backup copy in \"$WORK\" "
3095	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3096	else
3097	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3098	printf "\n or \"$tmp_data_catalog\" does not exist!"
3099	printf "\n *** trying to get copy from archive"
3100	actionin[$i]=ar
3101	fi
3102	fi
3103	fi
3104
3105
3106	# DATEI LIEGT AUF ARCHIV-SERVER
3107	if [[ "${actionin[$i]}" = ar ]]
3108	then
3109
3110	if [[ $files_for_pes = false ]]
3111	then
3112	printf "\n file will be restored from archive-system ($archive_system)!"
3113	else
3114	printf "\n directory will be restored from archive-system ($archive_system)!"
3115	fi
3116
3117	file_restored=false
3118
3119	if [[ $archive_system = asterix ]]
3120	then
3121	do_stagein=true
3122	(( stagein_anz = 0 ))
3123	while [[ $do_stagein = true ]]
3124	do
3125	if [[ $files_for_pes = false ]]
3126	then
3127	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3128	else
3129	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3130	fi
3131	cat STAGEIN_OUTPUT
3132	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3133	then
3134	file_restored=true
3135	do_stagein=false
3136	else
3137	(( stagein_anz = stagein_anz + 1 ))
3138	if (( stagein_anz == 10 ))
3139	then
3140	printf "\n +++ stagein stoped after 10 tries"
3141	locat=stage
3142	exit
3143	fi
3144	printf "\n +++ restoring from archive failed, trying again:"
3145	sleep 900
3146	fi
3147	done
3148	elif [[ $archive_system = DMF ]]
3149	then
3150	if [[ $files_for_pes = false ]]
3151	then
3152	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3153	locat=DMF
3154	exit
3155	else
3156	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3157	cp -r $ARCHIVE/${frelin[$i]} $PWD
3158	file_restored=true
3159	fi
3160	elif [[ $archive_system = tivoli ]]
3161	then
3162	if [[ $files_for_pes = false ]]
3163	then
3164	if [[ $localhost = lcsgih ]]
3165	then
3166	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3167	else
3168	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3169	fi
3170	else
3171	(( inode = 0 ))
3172	while (( inode < nodes ))
3173	do
3174	if [[ $localhost = lcsgih ]]
3175	then
3176	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3177	else
3178	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3179	fi
3180	(( inode = inode + 1 ))
3181	done
3182	fi
3183	file_restored=true
3184	elif [[ $archive_system = ut ]]
3185	then
3186	if [[ $files_for_pes = false ]]
3187	then
3188	cp $UT/${frelin[$i]} .
3189	else
3190	(( inode = 0 ))
3191	while (( inode < nodes ))
3192	do
3193	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3194	(( inode = inode + 1 ))
3195	done
3196	fi
3197	file_restored=true
3198	else
3199	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3200	locat=rearchive
3201	exit
3202	fi
3203
3204	if [[ $file_restored = true ]]
3205	then
3206
3207	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3208	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3209	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3210	if [[ $files_for_pes = false ]]
3211	then
3212	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3213	else
3214	mkdir $tmp_data_catalog/${frelin[$i]}
3215	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3216	fi
3217	got_tmp[$i]=true
3218
3219	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3220	mv ${frelin[$i]} ${localin[$i]}
3221
3222	fi
3223	fi
3224
3225
3226	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3227	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3228	then
3229
3230	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3231	then
3232
3233	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3234	printf "\n file will be provided for $numprocs processors"
3235	mkdir ${localin[$i]}
3236	ival=$numprocs
3237	(( ii = 0 ))
3238	while (( ii <= ival-1 ))
3239	do
3240	if (( ii < 10 ))
3241	then
3242	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3243	elif (( ii < 100 ))
3244	then
3245	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3246	elif (( ii < 1000 ))
3247	then
3248	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3249	else
3250	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3251	fi
3252	(( ii = ii + 1 ))
3253	done
3254
3255	else
3256
3257	if [[ $files_for_pes = true ]]
3258	then
3259
3260	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3261	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3262	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3263	# PER MOVE UMBENANNT WERDEN
3264	printf "\n providing $numprocs files for the respective processors"
3265	mkdir ${localin[$i]}
3266	if [[ $link_local_input = true ]]
3267	then
3268	printf " using ln -f\n"
3269	cd ${absnamein[$i]}
3270	for file in $(ls *)
3271	do
3272	ln -f $file ${localin[$i]}
3273	done
3274	cd $TEMPDIR
3275	fi
3276	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3277	if [[ ! -f "${localin[$i]}/_0000" ]]
3278	then
3279	if [[ $link_local_input = true ]]
3280	then
3281	printf " ln failed for .../_0000, using cp...\n"
3282	fi
3283	cp -r ${absnamein[$i]}/* ${localin[$i]}
3284	fi
3285
3286	else
3287	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3288	if [[ $link_local_input = true ]]
3289	then
3290	printf " using ln -f\n"
3291	ln -f ${absnamein[$i]} ${localin[$i]}
3292	fi
3293	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3294	if [[ ! -f "${localin[$i]}" ]]
3295	then
3296	if [[ $link_local_input = true ]]
3297	then
3298	printf " ln failed, using cp...\n"
3299	fi
3300	cp ${absnamein[$i]} ${localin[$i]}
3301	fi
3302	fi
3303	fi
3304	fi
3305
3306	done
3307	if (( i != 0 ))
3308	then
3309	printf "\n$striche\n *** all INPUT-files provided \n"
3310	fi
3311
3312
3313	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3314	(( i = 0 ))
3315	while (( i < iic ))
3316	do
3317	(( i = i + 1 ))
3318	if (( i == 1 ))
3319	then
3320	printf "\n\n *** execution of INPUT-commands:\n$striche"
3321	fi
3322	printf "\n >>> ${in_command[$i]}"
3323	eval ${in_command[$i]}
3324	if (( i == iic ))
3325	then
3326	printf "\n$striche\n"
3327	fi
3328	done
3329
3330
3331	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3332	cpurest=${cpumax}.
3333
3334
3335	# START DVR STREAMING SERVER
3336	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3337	then
3338	if [[ "$dvr_server" != "" ]]
3339	then
3340
3341	printf "\n\n *** preparing the dvr streaming server configuration file"
3342
3343	# Check, if a dvr server is already running
3344	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3345	if [[ "$running_dvrserver_id" != "" ]]
3346	then
3347
3348	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3349	printf "\n This server is used instead starting a new one!"
3350	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3351
3352	else
3353
3354	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3355	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3356	then
3357	cp ${PALM_BIN}/.dvrserver.config .
3358
3359	# Entering the BASEDIR, UID and GID into this file
3360	user_id=`id -u`
3361	group_id=`id -g`
3362	# & is needed as seperator, because TEMPDIR contains /
3363	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3364	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3365	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3366	mv .dvrserver.3 .dvrserver.config
3367	rm .dvrserver.1 .dvrserver.2
3368
3369	# Start dvr server in background, get his id and print on terminal
3370	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3371	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3372	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3373	local_dvrserver_running=.TRUE.
3374	else
3375	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3376	printf "\n \"$PALM_BIN\" "
3377	locat=dvr
3378	exit
3379	fi
3380
3381	fi
3382
3383	else
3384	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3385	fi
3386	fi
3387
3388
3389	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3390	# LESEN VON PALM)
3391	cat > ENVPAR << %%END%%
3392	&envpar run_identifier = '$fname', host = '$localhost',
3393	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3394	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3395	maximum_cpu_time_allowed = ${cpumax}.,
3396	revision = '$global_revision',
3397	local_dvrserver_running = $local_dvrserver_running /
3398
3399	%%END%%
3400
3401
3402	# PROGRAMMSTART
3403	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3404	PATH=$PATH:$TEMPDIR
3405
3406	# MPI debug option (argument checking, slows down execution due to increased latency)
3407	if [[ "$mpi_debug" = true ]]
3408	then
3409	export MPI_CHECK_ARGS=1
3410	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3411	fi
3412
3413	if [[ "$totalview" = true ]]
3414	then
3415	printf "\n *** totalview debugger will be used"
3416	tv_opt="-tv"
3417	else
3418	tv_opt=""
3419	fi
3420
3421	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3422	then
3423	if [[ "$ENVIRONMENT" = BATCH ]]
3424	then
3425	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3426	then
3427	printf "\n +++ debug is allowed in interactive mode only"
3428	locat=debug
3429	exit
3430	fi
3431	fi
3432	if [[ $localhost = ibmh ]]
3433	then
3434
3435	# SETUP THE IBM MPI ENVIRONMENT
3436	export MP_SHARED_MEMORY=yes
3437	export AIXTHREADS_SCOPE=S
3438	export OMP_NUM_THREADS=$threads_per_task
3439	export AUTHSTATE=files
3440	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3441
3442	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3443	export MP_ADAPTER_USE=shared
3444	export MP_CPU_USE=multiple
3445	export MP_TIMEOUT=1200
3446
3447	unset MP_TASK_AFFINITY
3448
3449	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3450	#(( ii = 1 ))
3451	#while (( ii <= $numprocs ))
3452	#do
3453	# echo $localhost_realname >> hostfile
3454	# (( ii = ii + 1 ))
3455	#done
3456	#export MP_HOSTFILE=hostfile
3457
3458	if [[ "$LOADLBATCH" = yes ]]
3459	then
3460	totalview poe a.out $ROPTS
3461	else
3462	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3463	export TVDSVRLAUNCHCMD=ssh
3464	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3465	fi
3466	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3467	then
3468	# CURRENTLY NO DEBUGGER ON LCSGI
3469	if [[ $run_coupled_model = true ]]
3470	then
3471	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3472	locat=debug
3473	exit
3474	else
3475	echo "no_coupling" > runfile_atmos
3476	fi
3477	(( ii = $numprocs / $threads_per_task ))
3478	export OMP_NUM_THREADS=$threads_per_task
3479	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3480	if [[ $threads_per_task != 1 ]]
3481	then
3482	printf "\n threads per task: $threads_per_task"
3483	fi
3484	printf "\n\n"
3485	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3486	then
3487	# export MPI_LAUNCH_TIMEOUT=360
3488	if [[ "$totalview" = true ]]
3489	then
3490	printf "\n running totalview debugger"
3491	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3492	else
3493	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3494	fi
3495	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3496	then
3497	# ulimit -s 300000 # A too large stack size causes problems
3498	# export MV2_NUM_PORTS=2
3499	# export MV2_CPU_MAPPING=0:1:2:3
3500	if [[ "$totalview" = true ]]
3501	then
3502	printf "\n running totalview debugger"
3503	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3504	else
3505	mpiexec ./a.out $ROPTS < runfile_atmos
3506	fi
3507	fi
3508	else
3509	printf "\n +++ no debug available on \"$localhost\" "
3510	printf "\n or not implemented in mrun so far"
3511	locat=debug
3512	exit
3513	fi
3514
3515	# end debug mode
3516	else
3517
3518	# normal execution
3519	if [[ -n $numprocs ]]
3520	then
3521	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3522	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3523	then
3524	# SETUP THE IBM MPI ENVIRONMENT
3525	if [[ $host != ibmh && $host != ibmkisti ]]
3526	then
3527	export MP_SHARED_MEMORY=yes
3528	export AIXTHREAD_SCOPE=S
3529	export OMP_NUM_THREADS=$threads_per_task
3530	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3531	export AUTHSTATE=files
3532	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3533	# export MP_PRINTENV=yes
3534
3535	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3536	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3537	export MP_WAIT_MODE=poll
3538	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3539	fi
3540
3541	if [[ $host = ibmkisti ]]
3542	then
3543	export LANG=en_US
3544	export MP_SHARED_MEMORY=yes
3545	if [[ $threads_per_task = 1 ]]
3546	then
3547	export MP_SINGLE_THREAD=yes
3548	export MEMORY_AFFINITY=MCM
3549	else
3550	export OMP_NUM_THREADS=$threads_per_task
3551	fi
3552	fi
3553
3554	if [[ "$LOADLBATCH" = yes ]]
3555	then
3556	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3557	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3558	then
3559	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3560	else
3561	if [[ $run_coupled_model = false ]]
3562	then
3563	if [[ "$ocean_file_appendix" = true ]]
3564	then
3565	echo "precursor_ocean" > runfile_atmos
3566	else
3567	echo "precursor_atmos" > runfile_atmos
3568	fi
3569	else
3570	(( iia = $numprocs_atmos / $threads_per_task ))
3571	(( iio = $numprocs_ocean / $threads_per_task ))
3572	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3573	printf "\n using $coupled_mode coupling"
3574	printf "\n\n"
3575	echo "coupled_run $iia $iio" > runfile_atmos
3576	fi
3577	poe ./a.out $ROPTS < runfile_atmos
3578	fi
3579	else
3580	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3581	then
3582	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3583	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3584	then
3585	if [[ -f $hostfile ]]
3586	then
3587	cp $hostfile hostfile
3588	else
3589	(( ii = 1 ))
3590	while (( ii <= $numprocs ))
3591	do
3592	echo $localhost_realname >> hostfile
3593	(( ii = ii + 1 ))
3594	done
3595	fi
3596	export MP_HOSTFILE=hostfile
3597	if [[ $run_coupled_model = false ]]
3598	then
3599	if [[ "$ocean_file_appendix" = true ]]
3600	then
3601	echo "precursor_ocean" > runfile_atmos
3602	else
3603	echo "precursor_atmos" > runfile_atmos
3604	fi
3605	else
3606	(( iia = $numprocs_atmos / $threads_per_task ))
3607	(( iio = $numprocs_ocean / $threads_per_task ))
3608	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3609	printf "\n using $coupled_mode coupling"
3610	printf "\n\n"
3611	echo "coupled_run $iia $iio" > runfile_atmos
3612	fi
3613	if [[ $localhost = ibmy ]]
3614	then
3615	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3616	else
3617	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3618	fi
3619
3620	else
3621	if [[ "$host_file" = "" ]]
3622	then
3623	printf "\n +++ no hostfile given in configuration file"
3624	locat=config_file
3625	exit
3626	else
3627	eval host_file=$host_file
3628	fi
3629	export MP_HOSTFILE=$host_file
3630	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3631	fi
3632	fi
3633	elif [[ $host = nech \|\| $host = necriam ]]
3634	then
3635	(( ii = nodes ))
3636	if [[ $ii = 1 ]]
3637	then
3638	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3639	export MPIPROGINF=YES
3640	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3641	echo "*** execution on single node with mpirun"
3642	mpirun -np $numprocs ./a.out $ROPTS
3643	else
3644	(( i = 0 ))
3645	while (( i < ii ))
3646	do
3647	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3648	(( i = i + 1 ))
3649	done
3650
3651	echo "#!/bin/sh" > mpi_exec_shell
3652	echo " " >> mpi_exec_shell
3653	echo "set -u" >> mpi_exec_shell
3654	echo "F_ERRCNT=0" >> mpi_exec_shell
3655	echo "MPIPROGINV=YES" >> mpi_exec_shell
3656	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3657	echo "cpurest=$cpurest" >> mpi_exec_shell
3658	echo "fname=$fname" >> mpi_exec_shell
3659	echo "localhost=$localhost" >> mpi_exec_shell
3660	echo "return_addres=$return_addres" >> mpi_exec_shell
3661	echo "return_username=$return_username" >> mpi_exec_shell
3662	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3663	echo "write_binary=$write_binary" >> mpi_exec_shell
3664	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3665	echo " " >> mpi_exec_shell
3666	echo "export F_ERRCNT" >> mpi_exec_shell
3667	echo "export MPIPROGINV" >> mpi_exec_shell
3668	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3669	echo "export cpurest" >> mpi_exec_shell
3670	echo "export fname" >> mpi_exec_shell
3671	echo "export localhost" >> mpi_exec_shell
3672	echo "export return_addres" >> mpi_exec_shell
3673	echo "export return_username" >> mpi_exec_shell
3674	echo "export tasks_per_node" >> mpi_exec_shell
3675	echo "export write_binary" >> mpi_exec_shell
3676	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3677	echo " " >> mpi_exec_shell
3678	echo "exec ./a.out" >> mpi_exec_shell
3679
3680	chmod u+x mpi_exec_shell
3681	export MPIPROGINF=YES
3682	mpirun -f multinode_config &
3683	wait
3684
3685	fi
3686	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3687	then
3688
3689	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3690	# DOES NOT EXIST
3691	if [[ $host != lccrayb &&$host != lccrayf && $host != lccrayh && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3692	then
3693	if [[ -f $hostfile ]]
3694	then
3695	cp $hostfile hostfile
3696	(( ii = $numprocs / $threads_per_task ))
3697	else
3698	(( ii = 1 ))
3699	while (( ii <= $numprocs / $threads_per_task ))
3700	do
3701	echo $localhost_realname >> hostfile
3702	(( ii = ii + 1 ))
3703	done
3704	fi
3705	eval zeile=\"`head -n $ii hostfile`\"
3706	printf "\n *** running on: $zeile"
3707	fi
3708
3709	(( ii = $numprocs / $threads_per_task ))
3710	export OMP_NUM_THREADS=$threads_per_task
3711	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3712	if [[ $threads_per_task != 1 ]]
3713	then
3714	# increase stack size to unlimited, because large runs
3715	# may abort otherwise
3716	ulimit -Ss unlimited
3717	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3718	fi
3719	if [[ $run_coupled_model = false ]]
3720	then
3721	if [[ "$ocean_file_appendix" = true ]]
3722	then
3723	echo "precursor_ocean" > runfile_atmos
3724	else
3725	echo "precursor_atmos" > runfile_atmos
3726	fi
3727	printf "\n\n"
3728	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3729	then
3730	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3731	then
3732	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3733	# export MPI_DSM_DISTRIBUTE=1
3734	# MPI_DSM_CPULIST: pin MPI processes to cores
3735	if [[ $use_openmp = false ]]
3736	then
3737	if [[ "$sgi_feature" = ice2 ]]
3738	then
3739	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3740	else
3741	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3742	fi
3743	else
3744	unset MPI_DSM_CPULIST
3745	fi
3746	# MPI_IB_RAILS: use both IB rails on ICE2
3747	export MPI_BUFS_PER_HOST=512
3748	export MPI_IB_RAILS=2
3749	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3750	export MPI_CONNECTIONS_THRESHOLD=8192
3751	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3752	export MPI_TYPE_DEPTH=20
3753	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3754	export MPI_GROUP_MAX=64
3755	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3756	if [[ $use_openmp = true ]]
3757	then
3758	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3759	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3760	else
3761	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3762	fi
3763
3764	# next is test for openmp usage
3765	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3766	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3767	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3768	then
3769	export MV2_NUM_PORTS=2
3770	# The default setting of MV2_CPU_MAPPING gives best results
3771	# export MV2_ENABLE_AFFINITY=1
3772	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3773	# if [[ "$sgi_feature" = ice2 ]]
3774	# then
3775	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3776	# else
3777	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3778	# fi
3779	if [[ $use_openmp = true ]]
3780	then
3781	unset MV2_CPU_MAPPING
3782	export MV2_ENABLE_AFFINITY=0
3783	fi
3784	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3785	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3786	if [[ $use_openmp = true ]]
3787	then
3788	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3789	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3790	else
3791	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3792	fi
3793	elif [[ "$mpilib" = impi ]]
3794	then
3795	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3796	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3797	fi
3798	elif [[ $host = lccrayb \|\| $host = lccrayh ]]
3799	then
3800	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3801	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3802	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3803	elif [[ $host = lccrayf ]]
3804	then
3805	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3806	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3807	then
3808	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3809	elif [[ $host = lcflow ]]
3810	then
3811	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3812	elif [[ $host = lcsb ]]
3813	then
3814	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3815	elif [[ $host = lckiaps ]]
3816	then
3817	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3818	elif [[ $host = lckyu* ]]
3819	then
3820	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3821	else
3822	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3823	fi
3824	else
3825
3826	# currently there is no full MPI-2 support on ICE and XT4
3827	(( iia = $numprocs_atmos / $threads_per_task ))
3828	(( iio = $numprocs_ocean / $threads_per_task ))
3829	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3830	printf "\n using $coupled_mode coupling"
3831	printf "\n\n"
3832
3833	if [[ $coupled_mode = "mpi2" ]]
3834	then
3835	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3836	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3837	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3838	then
3839
3840	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3841	then
3842	# export MPI_LAUNCH_TIMEOUT=360
3843	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3844	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3845	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3846	then
3847	# ulimit -s 300000 # A too large stack size causes problems
3848	# export MV2_NUM_PORTS=2
3849	# export MV2_CPU_MAPPING=0:1:2:3
3850	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3851	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3852	fi
3853
3854	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3855	then
3856
3857	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3858	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3859
3860	else
3861	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3862	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3863	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3864	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3865	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3866	fi
3867	wait
3868
3869	else
3870
3871	echo "coupled_run $iia $iio" > runfile_atmos
3872	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3873	then
3874
3875	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3876	then
3877	# export MPI_LAUNCH_TIMEOUT=360
3878	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3879	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3880	then
3881	# ulimit -s 300000 # A too large stack size causes problems
3882	# export MV2_NUM_PORTS=2
3883	# export MV2_CPU_MAPPING=0:1:2:3
3884	mpiexec ./a.out $ROPTS < runfile_atmos
3885	fi
3886
3887	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3888	then
3889
3890	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3891
3892	elif [[ $host = lck \|\| $host = lckordi ]]
3893	then
3894
3895	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3896
3897	elif [[ $host = lckyu* ]]
3898	then
3899
3900	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3901
3902	fi
3903	wait
3904	fi
3905
3906	fi
3907	elif [[ $host = lckyoto ]]
3908	then
3909	set -xv
3910	export P4_RSHCOMMAND=plesh
3911	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3912	if [[ "$ENVIRONMENT" = BATCH ]]
3913	then
3914	if [[ "$cond2" = fujitsu ]]
3915	then
3916	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3917	elif [[ "cond2" = pgi ]]
3918	then
3919	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3920	else
3921	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3922	fi
3923	else
3924	if [[ "$cond2" = "" ]]
3925	then
3926	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3927	else
3928	mpirun -np $numprocs ./a.out $ROPTS
3929	fi
3930	fi
3931	set +xv
3932	elif [[ $host = lctit ]]
3933	then
3934	export OMP_NUM_THREADS=$threads_per_task
3935	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3936	if [[ "$threads_per_task" != 1 ]]
3937	then
3938	export MV2_ENABLE_AFFINITY=0
3939	fi
3940	echo "----- PBS_NODEFILE content:"
3941	cat $PBS_NODEFILE
3942	echo "-----"
3943	(( ii = $numprocs / $threads_per_task ))
3944	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3945	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3946	else
3947	mpprun -n $numprocs a.out $ROPTS
3948	fi
3949	[[ $? != 0 ]] && execution_error=true
3950
3951
3952	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3953	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3954	then
3955	apprentice
3956	fi
3957	else
3958	a.out $ROPTS
3959	fi
3960	fi
3961	if [[ $? != 0 \|\| $execution_error = true ]]
3962	then
3963
3964	# ABBRUCH BEI LAUFZEITFEHLER
3965	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3966	printf "\n +++ runtime error occured"
3967	locat=execution
3968	exit
3969	else
3970	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3971	printf "\n$striche\n *** execution finished \n"
3972
3973	# Stop the dvr streaming server and process the dvr output in order
3974	# to create dvrs- and html-files containing all streams
3975	if [[ "$dvrserver_id" != "" ]]
3976	then
3977	kill $dvrserver_id
3978	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3979
3980	# If there is a directory, data have been output by the
3981	# streaming server. Otherwise, user has chosen dvrp_output=local
3982	if [[ -d DATA_DVR ]]
3983	then
3984
3985	# Add the current dvr configuration file to the dvr output
3986	# directory
3987	cp .dvrserver.config DATA_DVR
3988
3989	# Process the dvr output (option -s for also generating
3990	# sequence mode data)
3991	process_dvr_output -d DATA_DVR -f $fname -s
3992
3993	else
3994
3995	# Process the local output
3996	process_dvr_output -l -d DATA_DVR -f $fname
3997
3998	fi
3999
4000	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
4001	then
4002
4003	# Process dvr output generated in local mode (dvrp_output=local)
4004	process_dvr_output -l -d DATA_DVR -f $fname
4005
4006	fi
4007	fi
4008
4009
4010
4011	# Call of combine_plot_fields in order to merge single files written
4012	# by each PE into one file.
4013	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
4014	then
4015	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
4016	printf "\n 2d- and/or 3d-data may be incomplete!"
4017	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
4018	elif [[ "$combine_plot_fields" == true ]]
4019	then
4020	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
4021	then
4022	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
4023	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
4024	else
4025	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
4026	combine_plot_fields${block}.x
4027	fi
4028	else
4029	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4030	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4031	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4032	fi
4033
4034
4035
4036	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4037	(( i = 0 ))
4038	while (( i < ioc ))
4039	do
4040	(( i = i + 1 ))
4041	if (( i == 1 ))
4042	then
4043	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4044	fi
4045	printf "\n >>> ${out_command[$i]}"
4046	eval ${out_command[$i]}
4047	if (( i == ioc ))
4048	then
4049	printf "\n$striche\n"
4050	fi
4051	done
4052
4053
4054	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4055	if [[ $do_trace = true ]]
4056	then
4057	printf "\n\n"
4058	ls -al
4059	fi
4060
4061
4062
4063	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4064	(( i = 0 ))
4065	while (( i < iout ))
4066	do
4067	(( i = i + 1 ))
4068	if (( i == 1 ))
4069	then
4070	printf "\n\n *** saving OUTPUT-files:\n$striche"
4071	fi
4072
4073	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4074	files_for_pes=false; filetyp=file
4075	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4076	then
4077	files_for_pes=true; filetyp=directory
4078	actionout[$i]=""
4079	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4080	then
4081	actionout[$i]=""
4082	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4083	then
4084	files_for_pes=true; filetyp=directory
4085	actionout[$i]="ar"
4086	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4087	then
4088	actionout[$i]="ar"
4089	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4090	then
4091	files_for_pes=true; filetyp=directory
4092	actionout[$i]="fl"
4093	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4094	then
4095	actionout[$i]="fl"
4096	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4097	then
4098	files_for_pes=true; filetyp=directory
4099	actionout[$i]="tr"
4100	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4101	then
4102	actionout[$i]="tr"
4103	fi
4104
4105	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4106	then
4107	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4108	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4109	then
4110	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4111	else
4112
4113
4114	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4115	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4116	# REMOTE-RECHNUNGEN
4117	if [[ "${actionout[$i]}" = tr ]]
4118	then
4119	if [[ $localhost != $fromhost ]]
4120	then
4121	if [[ $files_for_pes = false ]]
4122	then
4123	cps=""
4124	cst=""
4125	else
4126	cps=-c
4127	cst="/"
4128	fi
4129	if [[ $localhost = nech ]]
4130	then
4131
4132	# TRANSFER IN EIGENSTAENDIGEM JOB
4133	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4134	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4135	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4136	if [[ $files_for_pes = false ]]
4137	then
4138	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4139	else
4140	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4141	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4142	fi
4143
4144	echo "set -x" > transfer_${localout[$i]}
4145	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4146
4147	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4148	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4149	printf "\n or higher cycle\n"
4150	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4151
4152	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4153
4154	if [[ $localhost = nech ]]
4155	then
4156	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4157	else
4158	if [[ "$LOGNAME" = b323013 ]]
4159	then
4160	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4161	else
4162	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4163	fi
4164	fi
4165
4166	else
4167
4168	# TRANSFER INNERHALB DIESES JOBS
4169	transfer_failed=false
4170	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4171	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4172	if [[ $localhost = lccrayb ]]
4173	then
4174	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4175	elif [[ $localhost = lccrayh ]]
4176	then
4177	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4178	else
4179	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4180	fi
4181	[[ $? != 0 ]] && transfer_failed=true
4182
4183	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4184	# LOKALER MASCHINE ANLEGEN
4185	if [[ $transfer_failed = true ]]
4186	then
4187	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4188	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4189
4190	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4191	# ANLEGEN.
4192	eval local_catalog=${pathout[$i]}
4193	if [[ ! -d $local_catalog ]]
4194	then
4195	printf " *** local directory does not exist. Trying to create:\n"
4196	printf " $local_catalog \n"
4197	mkdir -p $local_catalog
4198	fi
4199	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4200	transfer_problems=true
4201	fi
4202	fi
4203	else
4204
4205	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4206	actionout[$i]=""
4207	fi
4208	fi
4209
4210
4211	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4212	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4213	# REMOTE-RECHNUNGEN
4214	if [[ "${actionout[$i]}" = tra ]]
4215	then
4216	if [[ $localhost != $fromhost ]]
4217	then
4218	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4219	then
4220
4221	# TRANSFER IN EIGENSTAENDIGEM JOB
4222	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4223	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4224	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4225	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4226
4227	echo "set -x" > transfer_${localout[$i]}
4228	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4229
4230	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4231	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4232	printf "\n or higher cycle\n"
4233	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4234
4235	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4236
4237	if [[ $localhost = nech ]]
4238	then
4239	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4240	else
4241	if [[ $LOGNAME = b323013 ]]
4242	then
4243	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4244	else
4245	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4246	fi
4247	fi
4248
4249	else
4250
4251	# TRANSFER INNERHALB DIESES JOBS
4252	transfer_failed=false
4253	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4254	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4255	if [[ $localhost = lccrayb ]]
4256	then
4257	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4258	elif [[ $localhost = lccrayh ]]
4259	then
4260	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4261	else
4262	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4263	fi
4264	[[ $? != 0 ]] && transfer_failed=true
4265
4266	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4267	# LOKALER MASCHINE ANLEGEN
4268	if [[ $transfer_failed = true ]]
4269	then
4270	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4271	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4272
4273	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4274	# ANLEGEN
4275	eval local_catalog=${pathout[$i]}
4276	if [[ ! -d $local_catalog ]]
4277	then
4278	printf " *** local directory does not exist. Trying to create:\n"
4279	printf " $local_catalog \n"
4280	mkdir -p $local_catalog
4281	fi
4282
4283	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4284	transfer_problems=true
4285	fi
4286	fi
4287	else
4288
4289	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4290	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4291	actionout[$i]=a
4292	fi
4293	fi
4294
4295
4296	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4297	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4298	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4299	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4300	if [[ "${actionout[$i]}" = fl ]]
4301	then
4302	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4303	chmod g+rx $tmp_data_catalog
4304	if [[ $files_for_pes = false ]]
4305	then
4306	printf "\n >>> OUTPUT: ${localout[$i]} to"
4307	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4308	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4309	else
4310	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4311	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4312	mkdir $tmp_data_catalog/${frelout[$i]}
4313	cd ${localout[$i]}
4314	for file in $(ls *)
4315	do
4316	ln -f $file $tmp_data_catalog/${frelout[$i]}
4317	done
4318	cd $TEMPDIR
4319	fi
4320
4321
4322	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4323	if [[ $store_on_archive_system = true ]]
4324	then
4325
4326	if [[ $archive_system = asterix ]]
4327	then
4328	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4329	if [[ $files_for_pes = false ]]
4330	then
4331	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4332	else
4333	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4334	fi
4335	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4336	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4337	echo "then" >> archive_${frelout[$i]}
4338	echo " do_stageout=false" >> archive_${frelout[$i]}
4339	echo "else" >> archive_${frelout[$i]}
4340	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4341	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4342	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4343	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4344	if [[ $files_for_pes = false ]]
4345	then
4346	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4347	else
4348	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4349	fi
4350	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4351	echo "fi" >> archive_${frelout[$i]}
4352	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4353	elif [[ $archive_system = DMF ]]
4354	then
4355	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4356	if [[ $files_for_pes = false ]]
4357	then
4358	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4359	locat=DMF
4360	exit
4361	else
4362	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4363	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4364	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4365	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4366	fi
4367	elif [[ $archive_system = tivoli ]]
4368	then
4369	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4370	if [[ $files_for_pes = false ]]
4371	then
4372	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4373	echo "set -x" >> archive_${frelout[$i]}
4374	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4375	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4376	else
4377
4378	echo "set -x" >> archive_${frelout[$i]}
4379	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4380	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4381	cd $tmp_data_catalog
4382	all_files=`ls -1 ${frelout[$i]}/*`
4383	cd - > /dev/null
4384	(( inode = 0 ))
4385	(( tp1 = tasks_per_node + 1 ))
4386	while (( inode < nodes ))
4387	do
4388	# echo "*** all_files = \"$all_files\" "
4389	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4390	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4391	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4392	# echo "*** files = \"$files\" "
4393	# echo "*** all_files = \"$all_files\" "
4394	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4395	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4396	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4397	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4398	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4399	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4400	(( inode = inode + 1 ))
4401	done
4402	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4403	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4404	fi
4405	elif [[ $archive_system = ut ]]
4406	then
4407	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4408	if [[ $files_for_pes = false ]]
4409	then
4410	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4411	echo "set -x" >> archive_${frelout[$i]}
4412	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4413	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4414	else
4415
4416	echo "set -x" >> archive_${frelout[$i]}
4417	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4418	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4419	cd $tmp_data_catalog
4420	all_files=`ls -1 ${frelout[$i]}/*`
4421	cd - > /dev/null
4422	(( inode = 0 ))
4423	(( tp1 = tasks_per_node + 1 ))
4424	while (( inode < nodes ))
4425	do
4426	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4427	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4428	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4429	(( inode = inode + 1 ))
4430	done
4431	fi
4432	elif [[ $archive_system = none ]]
4433	then
4434	printf " +++ archiving on $localhost not available!\n"
4435	fi
4436
4437	if [[ $archive_system != none ]]
4438	then
4439	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4440	then
4441	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4442	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4443	elif [[ $localhost = nech ]]
4444	then
4445	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4446	fi
4447	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4448	fi
4449	else
4450	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4451	fi
4452
4453
4454	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4455	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4456	if [[ $files_for_pes = false ]]
4457	then
4458	cat /dev/null > ${pathout[$i]}
4459	else
4460	mkdir -p ${pathout[$i]}
4461	fi
4462
4463	fi
4464
4465
4466	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4467	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4468	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4469	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4470	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4471	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4472	if [[ "${actionout[$i]}" = ar ]]
4473	then
4474	if [[ $files_for_pes = false ]]
4475	then
4476	printf "\n >>> OUTPUT: ${localout[$i]} to"
4477	printf "\n ${pathout[$i]}"
4478	printf "\n File will be copied to archive-system ($archive_system) !\n"
4479	else
4480	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4481	printf "\n ${pathout[$i]}"
4482	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4483	fi
4484	mv ${localout[$i]} ${frelout[$i]}
4485
4486	file_saved=false
4487
4488	if [[ $archive_system = asterix ]]
4489	then
4490	do_stageout=true
4491	(( stageout_anz = 0 ))
4492	while [[ $do_stageout = true ]]
4493	do
4494	if [[ $files_for_pes = false ]]
4495	then
4496	stageout ${frelout[$i]} > STAGE_OUTPUT
4497	else
4498	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4499	fi
4500	cat STAGE_OUTPUT
4501	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4502	then
4503	file_saved=true
4504	do_stageout=false
4505	else
4506	if [[ $files_for_pes = false ]]
4507	then
4508	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4509	else
4510	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4511	fi
4512	(( stageout_anz = stageout_anz + 1 ))
4513	if (( stageout_anz == 10 ))
4514	then
4515	printf "\n +++ stoped after 10 unsuccessful tries!"
4516	archive_save=false
4517	do_stageout=false
4518	else
4519	printf "\n *** new try to store on archive after 15 min:"
4520	sleep 900
4521	fi
4522	fi
4523	done
4524	elif [[ $archive_system = DMF ]]
4525	then
4526	if [[ $files_for_pes = false ]]
4527	then
4528	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4529	locat=DMF
4530	exit
4531	else
4532	rm -rf $ARCHIVE/${frelout[$i]}
4533	cp -r ${frelout[$i]} $ARCHIVE
4534	fi
4535	file_saved=true
4536	elif [[ $archive_system = tivoli ]]
4537	then
4538	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4539	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4540	# GELEGT WERDEN
4541	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4542	chmod g+rx $tmp_data_catalog
4543	if [[ $files_for_pes = false ]]
4544	then
4545	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4546	else
4547	mkdir $tmp_data_catalog/${frelout[$i]}
4548	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4549	fi
4550
4551	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4552	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4553	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4554	if [[ $files_for_pes = false ]]
4555	then
4556	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4557	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4558	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4559	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4560	else
4561	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4562	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4563	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4564	fi
4565
4566	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4567	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4568	file_saved=true
4569
4570	elif [[ $archive_system = ut ]]
4571	then
4572	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4573	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4574	# GELEGT WERDEN
4575	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4576	chmod g+rx $tmp_data_catalog
4577	if [[ $files_for_pes = false ]]
4578	then
4579	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4580	else
4581	mkdir $tmp_data_catalog/${frelout[$i]}
4582	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4583	fi
4584
4585	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4586	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4587	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4588	if [[ $files_for_pes = false ]]
4589	then
4590	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4591	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4592	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4593	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4594	else
4595	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4596	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4597	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4598	fi
4599
4600	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4601	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4602	file_saved=true
4603
4604	else
4605	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4606	archive_save=false
4607	fi
4608	if [[ $file_saved = true ]]
4609	then
4610	if [[ $files_for_pes = false ]]
4611	then
4612	cat /dev/null > ${pathout[$i]}
4613	else
4614	mkdir -p ${pathout[$i]}
4615	fi
4616	fi
4617	fi
4618
4619	# APPEND AUF LOKALER MASCHINE
4620	if [[ "${actionout[$i]}" = "a" ]]
4621	then
4622	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4623	then
4624	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4625	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4626	else
4627	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4628	cat ${localout[$i]} >> ${pathout[$i]}
4629	fi
4630	fi
4631
4632	# KOPIEREN AUF LOKALER MASCHINE
4633	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4634	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4635	then
4636
4637	# KOPIEREN AUF EINPROZESSORMASCHINE
4638	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4639	then
4640	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4641	if [[ $link_local_output = true ]]
4642	then
4643	printf " using ln -f\n"
4644	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4645	fi
4646	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4647	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4648	then
4649	if [[ $link_local_output = true ]]
4650	then
4651	printf " ln failed, using cp...\n"
4652	fi
4653	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4654	fi
4655	else
4656	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4657	if [[ $link_local_output = true ]]
4658	then
4659	printf " using ln -f\n"
4660	ln -f ${localout[$i]} ${pathout[$i]}
4661	fi
4662	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4663	if [[ ! -f "${pathout[$i]}" ]]
4664	then
4665	if [[ $link_local_output = true ]]
4666	then
4667	printf " ln failed, using cp...\n"
4668	fi
4669	cp ${localout[$i]} ${pathout[$i]}
4670	fi
4671	fi
4672
4673	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4674	then
4675
4676	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4677	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4678	# WIRD DANN KOPIERT
4679	# PER MOVE UMBENANNT WERDEN
4680	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4681	if [[ $link_local_output = true ]]
4682	then
4683	printf " using ln -f\n"
4684	mkdir ${pathout[$i]}
4685	cd ${localout[$i]}
4686	for file in $(ls *)
4687	do
4688	ln -f $file ${pathout[$i]}
4689	done
4690	cd $TEMPDIR
4691	fi
4692	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4693	if [[ ! -f "${pathout[$i]}/_0000" ]]
4694	then
4695	if [[ $link_local_output = true ]]
4696	then
4697	printf " ln failed for .../_0000, using cp...\n"
4698	fi
4699	cp -r ${localout[$i]} ${pathout[$i]}
4700	fi
4701
4702	fi
4703	fi
4704	done
4705	if (( i != 0 ))
4706	then
4707	if [[ $transfer_problems = true ]]
4708	then
4709	printf "\n$striche\n *** OUTPUT-files saved"
4710	printf "\n +++ WARNING: some data transfers failed! \n"
4711	else
4712	printf "\n$striche\n *** all OUTPUT-files saved \n"
4713	fi
4714	fi
4715
4716
4717	# EVENTUELL FOLGEJOB STARTEN
4718	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4719	if [[ -f CONTINUE_RUN ]]
4720	then
4721
4722	if [[ $archive_save = true ]]
4723	then
4724
4725	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4726	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4727	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4728	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4729	# HANDEN
4730	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4731	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4732	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4733	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4734	then
4735	mc=`echo $mc \| sed 's/#/f/g'`
4736	fi
4737
4738
4739	# JOB STARTEN
4740	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4741	echo " $mc"
4742	printf "\n$striche\n"
4743	if [[ $localhost != $fromhost ]]
4744	then
4745
4746	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = lccrayh \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4747	then
4748	echo "*** ssh will be used to initiate restart-runs!"
4749	echo " return_addres=\"$return_addres\" "
4750	echo " return_username=\"$return_username\" "
4751	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4752	then
4753	if [[ $localhost = ibmh ]]
4754	then
4755	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4756	elif [[ $localhost = lccrayb ]]
4757	then
4758	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4759	elif [[ $localhost = lccrayh ]]
4760	then
4761	ssh $usern@hlogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4762
4763	else
4764	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4765	fi
4766	else
4767	if [[ $localhost = ibmkisti ]]
4768	then
4769	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4770	elif [[ $localhost = lcflow ]]
4771	then
4772	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4773	elif [[ $localhost = lccrayb ]]
4774	then
4775	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4776	elif [[ $localhost = lccrayh ]]
4777	then
4778	ssh $usern@130.75.4.1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4779	else
4780	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4781	fi
4782	fi
4783	else
4784	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4785	locat=restart; exit
4786	fi
4787
4788	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4789	# DER AKTUELLE JOB ENDET
4790	if [[ $queue = special1q ]]
4791	then
4792	sleep 120
4793	else
4794	sleep 30
4795	fi
4796
4797	else
4798
4799	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4800	# RUFEN WERDEN, AUSSER AUF lcfimm
4801	cd $LOCAL_PWD
4802	if [[ $localhost = lcfimm ]]
4803	then
4804	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4805	elif [[ $localhost = lckyuh ]]
4806	then
4807	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4808	printf "\n please restart job manually using command:\n"
4809	printf "\n \"$mc\" "
4810	else
4811	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4812	fi
4813	cd - > /dev/null
4814	fi
4815	if [[ $localhost = lckyuh ]]
4816	then
4817	printf "\n$striche\n *** restart-run to be initiated manually\n"
4818	else
4819	printf "\n$striche\n *** restart-run initiated \n"
4820	fi
4821
4822
4823	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4824	# GEHOLT WORDEN SIND, LOESCHEN
4825	(( i = 0 ))
4826	while (( i < iin ))
4827	do
4828	(( i = i + 1 ))
4829	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4830	then
4831	rm -r $tmp_data_catalog/${frelin[$i]}
4832	fi
4833	done
4834
4835	else
4836
4837	printf "\n +++ no restart-run possible, since errors occured"
4838	printf "\n during the archive process"
4839	fi
4840
4841	fi
4842
4843
4844
4845	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4846	if [[ "$email_notification" != "none" ]]
4847	then
4848
4849	if [[ $localhost != $fromhost ]]
4850	then
4851	if [[ -f CONTINUE_RUN ]]
4852	then
4853	echo "PALM restart run necessary" > email_text
4854	echo "description header of actual run:" >> email_text
4855	cat CONTINUE_RUN >> email_text
4856	echo "mrun-command to restart:" >> email_text
4857	echo "$mc" >> email_text
4858	else
4859	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4860	fi
4861	mail $email_notification < email_text
4862	printf "\n *** email notification sent to \"$email_notification\" "
4863	fi
4864	fi
4865
4866
4867
4868	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4869	cd $HOME
4870	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4871
4872	else
4873
4874
4875	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4876	# CHENDE AKTIONEN DURCHGEFUEHRT
4877
4878	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4879	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4880	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4881	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4882	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4883	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4884	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4885	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4886	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4887	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4888	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4889	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4890	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4891	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4892	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4893	if [[ $use_openmp = true ]]
4894	then
4895	mrun_com=${mrun_com}" -O $threads_per_task"
4896	fi
4897	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4898	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4899	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4900	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4901	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4902	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4903	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4904	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4905	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4906	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4907	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4908	if [[ $do_remote = true ]]
4909	then
4910	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4911	fi
4912
4913
4914	# create executable for batch job
4915	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4916	then
4917
4918	printf "\n *** creating the executable for batch job\n"
4919
4920	# method only works for batch jobs on local hosts
4921	if [[ $host != $localhost ]]
4922	then
4923	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4924	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4925	locat=create_executable; exit
4926	fi
4927
4928	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4929	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4930
4931	cp $make_depository .
4932	tar -xf $make_depository > /dev/null 2>&1
4933	cp ../* . > /dev/null 2>&1
4934
4935	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4936
4937	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4938	then
4939	printf "\n +++ error occured while compiling or linking"
4940	locat=compile
4941	exit
4942	fi
4943
4944	mv a.out ..
4945	cd - > /dev/null 2>&1
4946	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4947
4948	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4949
4950	fi
4951
4952
4953	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4954	jobfile=jobfile.$RANDOM
4955
4956
4957	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4958	echo "mkdir $TEMPDIR" >> $jobfile
4959	echo "cd $TEMPDIR" >> $jobfile
4960
4961
4962	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4963	if [[ $do_trace = true ]]
4964	then
4965	echo "set -x" >> $jobfile
4966	else
4967	echo "set +vx" >> $jobfile
4968	fi
4969
4970
4971	# initialize the environment and load modules
4972	if [[ "$init_cmds" != "" ]]
4973	then
4974	echo "$init_cmds" >> $jobfile
4975	fi
4976	if [[ "$module_calls" != "" ]]
4977	then
4978	echo "$module_calls" >> $jobfile
4979	fi
4980
4981
4982	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4983	# DATEI FUER DEN JOB
4984	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf \|\| $host = lccrayh ]]
4985	then
4986
4987	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4988	# KOPIEREN
4989	if [[ $restart_run != true ]]
4990	then
4991	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4992	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4993	fi
4994
4995	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4996	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4997	echo "set -x" >> $jobfile
4998	if [[ $host = $localhost ]]
4999	then
5000
5001	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
5002	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
5003	if [[ $(echo $host \| cut -c1-6) = lccray ]]
5004	then
5005	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5006	else
5007	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5008	fi
5009
5010	else
5011	if [[ $host = ibmkisti ]]
5012	then
5013	# on KISTI's IBM firewall is only opened on interactive node
5014	echo "localdir=\`pwd\`" >> $jobfile
5015	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5016	elif [[ $host = lccrayb ]]
5017	then
5018	echo "localdir=\`pwd\`" >> $jobfile
5019	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5020	elif [[ $host = lccrayh ]]
5021	then
5022	echo "localdir=\`pwd\`" >> $jobfile
5023	echo "ssh $SSH_PORTOPT $remote_username@hlogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5024
5025	else
5026	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5027	fi
5028	fi
5029	echo "export SOURCES_COMPLETE=true" >> $jobfile
5030
5031	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
5032	# ARBEITSVERZEICHNIS VERSCHIEBEN
5033	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
5034	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
5035	echo "chmod u+rwx $mrun_script_name" >> $jobfile
5036	echo "execute_mrun=true" >> $jobfile
5037	echo " " >> $jobfile
5038
5039	else
5040
5041	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
5042	# SOWIE GEGEBENENFALLS DES MAKEFILES
5043	if [[ $do_compile = true ]]
5044	then
5045
5046	source_catalog=SOURCES_FOR_RUN_$fname
5047
5048	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
5049	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
5050	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
5051	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
5052	echo "export SOURCES_COMPLETE=true" >> $jobfile
5053	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
5054
5055	for filename in $source_list
5056	do
5057	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5058	echo "cat > $filename << \"%END%\"" >> $jobfile
5059	cat $source_catalog/$filename >> $jobfile
5060	echo " " >> $jobfile
5061	echo "%END%" >> $jobfile
5062	echo " " >> $jobfile
5063	done
5064
5065	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5066	echo "cat > Makefile << \"%END%\"" >> $jobfile
5067	cat $source_catalog/Makefile >> $jobfile
5068	echo " " >> $jobfile
5069	echo "%END%" >> $jobfile
5070	echo " " >> $jobfile
5071
5072	echo "cd - > /dev/null" >> $jobfile
5073
5074	fi
5075
5076
5077	# ABSPEICHERN DER KONFIGURATIONSDATEI
5078	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5079	# Lines with #$ coming from the svn keyword substitution are
5080	# removed from the config file in order to avoid problems
5081	# with the SGE batch system
5082	echo "cat > $config_file << \"%END%\"" >> $jobfile
5083	if [[ $host = lckyuh ]]
5084	then
5085	# no cross compiler on compute node
5086	sed 's/frtpx/frt/g' $config_file >> $jobfile
5087	else
5088	sed 's/#$.*//g' $config_file >> $jobfile
5089	fi
5090	echo "%END%" >> $jobfile
5091	echo " " >> $jobfile
5092
5093
5094	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5095	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5096	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5097	if [[ $host = lckyuh ]]
5098	then
5099	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5100	else
5101	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5102	fi
5103	echo "%END%" >> $jobfile
5104	echo "chmod u+x $mrun_script_name" >> $jobfile
5105	echo "execute_mrun=true" >> $jobfile
5106	echo " " >> $jobfile
5107
5108	fi
5109
5110
5111	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5112	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5113	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5114	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5115	if [[ $do_remote = true ]]
5116	then
5117	(( i = 0 ))
5118	while (( i < iin ))
5119	do
5120	(( i = i + 1 ))
5121	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5122	if [[ "${transin[$i]}" = job ]]
5123	then
5124	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5125	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5126	echo " " >> $jobfile
5127	echo "%END%" >> $jobfile
5128	else
5129	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5130	fi
5131
5132	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5133	echo "if [[ \$? = 1 ]]" >> $jobfile
5134	echo "then" >> $jobfile
5135	echo " echo \" \" " >> $jobfile
5136	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5137	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5138	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5139	echo " execute_mrun=false" >> $jobfile
5140	echo "fi" >> $jobfile
5141	done
5142	fi
5143
5144	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5145	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5146	echo "LOCAL_PWD=$working_directory" >> $jobfile
5147	echo "export LOCAL_PWD" >> $jobfile
5148
5149	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5150	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5151	echo "export LOCAL_MRUN_PATH" >> $jobfile
5152
5153	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5154	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5155	then
5156	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5157	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5158	then
5159	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5160	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5161	fi
5162
5163	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5164	echo "set -x" >> $jobfile
5165	echo "queue=$queue" >> $jobfile
5166	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5167	echo 'ls -al; echo `pwd`' >> $jobfile
5168	echo "cd \$HOME" >> $jobfile
5169	echo "rm -rf $TEMPDIR" >> $jobfile
5170
5171
5172
5173
5174	# JOB PER SUBJOB STARTEN
5175	if [[ $silent = false ]]
5176	then
5177	printf "\n "
5178	else
5179	printf "\n\n"
5180	fi
5181
5182	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5183	rm -rf $jobfile
5184
5185
5186	fi # ENDE REMOTE-TEIL
5187
5188
5189
5190	# ENDE DER PROZEDUR

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