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source: palm/trunk/SCRIPTS/mrun @ 1281

Last change on this file since 1281 was 1281, checked in by raasch, 10 years ago
rsync-copy restricted to Cray machines, since sommand is unavailable on some other systems
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File size: 191.6 KB

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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# rsync-copy restricted to Cray machines, since command is unavailable on some
25	# other systems
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: mrun 1281 2014-02-01 07:55:49Z raasch $
30	#
31	# 1279 2014-01-28 12:10:14Z raasch
32	# tasks_per_node must not be an integral divisor of numprocs any more. This was done
33	# in order to remove annoying restrictions concerning the number of processors which
34	# appear on machines with larger nodes (e.g. containing 24 cores). Now without this
35	# restriction, one of the nodes will be filled with less than the given number of
36	# tasks per node. A respective warning is given.
37	#
38	# 1274 2014-01-09 13:14:54Z heinze
39	# adjustments for lccrayh
40	#
41	# 1272 2014-01-08 10:19:32Z witha
42	# small adjustment for lcflow
43	#
44	# 1270 2013-12-16 11:05:01Z fricke
45	# call of combine_plot_fields adjusted for lccrayb/lccrayh
46	#
47	# 1255 2013-11-07 14:43:35Z raasch
48	# further adjustments for lccrayb remote access
49	#
50	# 1241 2013-10-30 11:36:58Z heinze
51	# Enable use of nudging input and input of large scale forcing from
52	# external files
53	#
54	# 1229 2013-09-20 06:55:19Z raasch
55	# further adjustments for lccrayb
56	#
57	# 1224 2013-09-16 07:27:23Z raasch
58	# first adjustments for lccrayb
59	#
60	# 1210 2013-08-14 10:58:20Z raasch
61	# fftw support added
62	#
63	# 1201 2013-07-10 16:17:59Z witha
64	# adjustments for Forwind cluster (lcflow)
65	#
66	# 1199 2013-07-05 14:52:22Z raasch
67	# adjustments for CSC Helsinki (lccrayf),
68	# executables for batch jobs can be created in advance, in order to avoid calling
69	# the compiler within the batch job (only works if batch jobs are submitted on
70	# local host)
71	#
72	# 1190 2013-06-25 09:39:21Z heinze
73	# enable use of automatic restarts for ibmh
74	# use of cluster/express queue enabled (ibmh)
75	#
76	# 1124 2013-04-09 15:46:52Z raasch
77	# variable "memory" is exported via typeset option -x, because otherwise an unknown
78	# side effect may lead to data loss while getopts is reading the script-option arguments
79	#
80	# 1122 2013-04-09 08:37:16Z heinze
81	# Bugfix: change type of variable last_char
82	#
83	# 1119 2013-04-05 15:11:19Z raasch
84	# Bugfix for setting -T option for subjob
85	#
86	# 1108 2013-03-05 07:03:32Z raasch
87	# bugfix for coupled runs on lckyut/lckyuh
88	#
89	# 1106 2013-03-04 05:31:38Z raasch
90	# --stdin argument for mpiexec on lckyuh
91	# -y and -Y settings output to header
92	#
93	# 1103 2013-02-20 02:15:53Z raasch
94	# default script runs again under ksh, because of unsolved problems with read
95	# from stdin: when bash script is called from a ksh, message "read error: 0:
96	# Resource temporarily unavailable" appears and script does not stop,
97	# further bash compatibility adjustments,
98	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
99	# on lckyuh, but mrun does not terminate and issues a warning instead
100	#
101	# 1101 2013-02-17 10:20:21Z raasch
102	# script now running under bash instead of ksh, which required small adjustments
103	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
104	# read from stdin),
105	# cross compilername on lckyuh compute nodes replaced by real compiler name
106	#
107	# 1099 2013-02-10 01:47:43Z raasch
108	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
109	# and for Forwind cluster (lcflow)
110	# small further adjustments for lckyut
111	#
112	# 1094 2013-02-03 01:52:12Z raasch
113	# explicit ssh/scp port can be set in config file with environment variable
114	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
115	# decalpha parts (yonsei) removed
116	#
117	# 2013-02-02 07:06:13Z raasch
118	# adjustments for Kyushu-University computing center (lckyut - tatara)
119	#
120	# 1083 2013-01-04 10:22:09Z maronga
121	# bugfix in parameter file check (read %cpp_options was missing)
122	#
123	# 1069 2012-11-28 16:18:43Z maronga
124	# bugfix: coupling mode was always set to mpi2, typos removed
125	#
126	# 1058 2012-11-21 07:00:35Z raasch
127	# Intel inspector (inspxe) is given the number of PEs instead of the number of
128	# nodes
129	#
130	# 1046 2012-11-09 14:38:45Z maronga
131	# code put under GPL (PALM 3.9)
132	#
133	# 21/03/94 - Siggi - first version finished
134	# 03/03/94 - Siggi - script development started
135	#
136	#--------------------------------------------------------------------------------#
137	# mrun - script for running PALM jobs
138	#--------------------------------------------------------------------------------#
139
140
141
142	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
143
144	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
145	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
146	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
147
148	AddFilenames=""
149	additional_conditions=""
150	add_source_path=""
151	afname=""
152	archive_save=true
153	archive_system=none
154	check_namelist_files=true
155	combine_plot_fields=true
156	compiler_name=""
157	cond1=""
158	cond2=""
159	config_file=.mrun.config
160	coupled_dist=""
161	coupled_mode="mpi1"
162	cpp_opts=""
163	cpp_options=""
164	cpumax=0
165	cpurest=0
166	create_executable_for_batch=false
167	delete_temporary_catalog=true
168	do_batch=false
169	do_compile=true
170	do_remote=false
171	do_stagein=true
172	do_stageout=true
173	do_trace=false
174	email_notification="none"
175	exclude=""
176	executable=""
177	execution_error=false
178	fftw_inc=""
179	fftw_lib=""
180	fftw_support=false
181	fimm=false
182	fname=test
183	fromhost=""
184	global_revision=""
185	group_number=none
186	host=""
187	host_file=""
188	hp=""
189	ignore_archive_error=false
190	input_list=""
191	interpreted_config_file=""
192	job_catalog="~/job_queue"
193	job_on_file=""
194	keep_data_from_previous_run=false
195	link_local_input=false
196	link_local_output=false
197	localhost_realname=$(hostname)
198	local_compile=false
199	local_dvrserver_running=.FALSE.
200	locat=normal
201	mainprog=""
202	makefile=""
203	max_par_io_str=""
204	mc=$0
205	while [[ $(echo $mc \| grep -c "/") != 0 ]]
206	do
207	mc=`echo $mc \| cut -f2- -d"/"`
208	done
209	module_calls=""
210	mrun_script_name=$mc
211	netcdf_inc=""
212	netcdf_lib=""
213	netcdf_support=false
214	node_usage=default
215	numprocs=""
216	numprocs_atmos=0
217	numprocs_ocean=0
218	OOPT=""
219	openmp=false
220	output_list=""
221	package_list=""
222	punkte="..........................................................."
223	queue=none
224	read_from_config=""
225	restart_run=false
226	if [[ `hostname` = rte10 ]]
227	then
228	return_addres=133.5.185.60
229	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
230	elif [[ `hostname` = climate0 ]]
231	then
232	return_addres=165.132.26.68
233	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
234	elif [[ `hostname` = urban00 ]]
235	then
236	return_addres=147.46.30.151
237	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
238	else
239	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
240	fi
241	return_password=""
242	return_username=$LOGNAME
243	remotecall=false
244	remote_username=""
245	run_coupled_model=false
246	run_mode=""
247	scirocco=false
248	store_on_archive_system=false
249	striche=" ----------------------------------------------------------------------------"
250	silent=false
251	source_list=""
252	source_path=SOURCE
253	tasks_per_node=""
254	threads_per_task=1
255	tmpcreate=false
256	tmp_data_catalog=""
257	transfer_problems=false
258	usern=$LOGNAME
259	use_openmp=false
260	version="MRUN 2.0 Rev$Rev: 1281 $"
261	working_directory=`pwd`
262	TOPT=""
263	XOPT=""
264	zeit=$( date \| cut -c 12-19 )
265
266	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
267	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
268	# effect may cause data loss when getopts is reading the
269	# script-option arguments
270	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes remaining_pes sekunden tp1
271
272
273
274
275	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
276	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
277
278	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
279	# EXPORTIERT WERDEN
280	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
281	export group_number input_list numprocs output_list queue run_mode
282
283
284
285	# FEHLERBEHANDLUNG
286	# BEI EXIT:
287	trap 'rm -rf $working_directory/tmp_mrun
288	if [[ $locat != localhost ]]
289	then
290	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
291	# then
292	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
293	#MRUN-calls on $localhost
294	#
295	#date and time user localhost remotehost termination mrun-command
296	#--------------------------------------------------------------------------------------------------------------------
297	#%STATEND%
298	# chmod 666 ${mrun_path}/statistik/mrun_statistik
299	# fi
300	#
301	# # EINTRAG IN DIE STATISTIK-DATEI
302	# string1=`date` #-L35
303	# string2=$usern #-L12
304	# string3=$localhost_realname #-L12
305	# string4=$host #-L12
306	# string5=$locat #-L12
307	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
308	# then
309	# if [[ $do_batch = true ]]
310	# then
311	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
312	# else
313	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
314	# fi
315	# fi
316	echo " " > /dev/null
317	fi
318
319	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
320	then
321
322	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
323	(( i = 0 ))
324	while (( i < iec ))
325	do
326	(( i = i + 1 ))
327	printf "\n *** Execution of ERROR-command:\n"
328	printf " >>> ${err_command[$i]}\n"
329	eval ${err_command[$i]}
330	done
331	if [[ -n $interpreted_config_file ]]
332	then
333	rm -rf $interpreted_config_file
334	fi
335	if [[ -n .mrun_environment ]]
336	then
337	rm -rf .mrun_environment
338	fi
339	if [[ $tmpcreate = true ]]
340	then
341	printf "\n *** Contents of \"$TEMPDIR\":\n"
342	ls -al; cd
343	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
344	fi
345	if [[ "$dvrserver_id" != "" ]]
346	then
347	echo "+++ killing dvrserver_id=$dvrserver_id"
348	kill $dvrserver_id
349	fi
350	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
351	then
352	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
353	fi
354	printf "\n\n+++ MRUN killed \n\n"
355	elif [[ $locat != control_c ]]
356	then
357	printf "\n\n --> all actions finished\n\n"
358	printf " Bye, bye $usern !!\n\n"
359	fi' exit
360
361
362	# BEI TERMINAL-BREAK:
363	trap 'rm -rf $working_directory/tmp_mrun
364	rm -rf $working_directory/tmp_check_namelist_files
365	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
366	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
367	then
368	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
369	fi
370	if [[ "$dvrserver_id" != "" ]]
371	then
372	echo "+++ killing dvrserver_id=$dvrserver_id"
373	kill $dvrserver_id
374	fi
375	printf "\n+++ MRUN killed by \"^C\" \n\n"
376	locat=control_c
377	exit
378	' 2
379
380
381	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
382	# BEEN SET
383	if [[ "$PALM_BIN" = "" ]]
384	then
385	printf "\n +++ environment variable PALM_BIN has not been set"
386	printf "\n please set it to the directory where the PALM scripts are located"
387	locat=palm_bin; exit
388	fi
389	export PATH=$PALM_BIN:$PATH
390
391
392
393	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
394	# FUER FOLGEJOBS BENOETIGT WIRD
395	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
396	do
397	case $option in
398	(a) afname=$OPTARG;;
399	(A) store_on_archive_system=true; mc="$mc -A";;
400	(b) do_batch=true; mc="$mc -b";;
401	(B) delete_temporary_catalog=false; mc="$mc -B";;
402	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
403	(C) restart_run=true; mc="$mc -C";;
404	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
405	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
406	(F) job_on_file="-D"; mc="$mc -F";;
407	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
408	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
409	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
410	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
411	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
412	(I) ignore_archive_error=true; mc="$mc -I";;
413	(k) keep_data_from_previous_run=true; mc="$mc -k";;
414	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
415	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
416	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
417	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
418	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
419	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
420	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
421	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
422	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
423	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
424	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
425	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
426	(S) read_from_config=false; mc="$mc -S";;
427	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
428	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
429	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
430	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
431	(v) silent=true; mc="$mc -v";;
432	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
433	(x) do_trace=true;set -x; mc="$mc -x";;
434	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
435	(y) ocean_file_appendix=true; mc="$mc -y";;
436	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
437	(z) check_namelist_files=false; mc="$mc -z";;
438	(Z) combine_plot_fields=false; mc="$mc -Z";;
439	(\?) printf "\n +++ unknown option $OPTARG \n"
440	printf "\n --> type \"$0 ?\" for available options \n"
441	locat=parameter;exit;;
442	esac
443	done
444
445
446	# EVTL. POSITIONSPARAMETER EINLESEN
447	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
448	(( to_shift = $OPTIND - 1 ))
449	shift $to_shift
450
451	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
452	if [[ "$1" = "?" ]]
453	then
454	(printf "\n *** mrun can be called as follows:\n"
455	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
456	printf "\n Description of available options:\n"
457	printf "\n Option Description Default-Value"
458	printf "\n -a base name of input files equiv. -d"
459	printf "\n -A archiving when using file-attribute fl"
460	printf "\n -b batch-job on local machine ---"
461	printf "\n -B do not delete temporary directory at end ---"
462	printf "\n -c configuration file .mrun.config"
463	printf "\n -d base name of files attached to program test"
464	printf "\n -D preprocessor(cpp)-directives \"\" "
465	printf "\n -F create remote job file only ---"
466	printf "\n -h execution host $localhost_realname"
467	printf "\n -i INPUT control list \"\" "
468	printf "\n -I archiving errors of previous batch-jobs"
469	printf "\n will be ignored"
470	printf "\n -k keep data from previous run"
471	printf "\n -K additional conditions for controling"
472	printf "\n usage of conditional code and"
473	printf "\n env-variables in configuration file \"\" "
474	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
475	printf "\n -M Makefile name Makefile"
476	printf "\n -n node usage (shared/not_shared) depending on -h"
477	printf "\n -o OUTPUT control list \"\" "
478	printf "\n -O use OpenMP ---"
479	printf "\n -p software package list \"\" "
480	printf "\n -q queue \"$queue\" "
481	printf "\n -r run control list (combines -i -o) \"\" "
482	printf "\n -s filenames of routines to be compiled \"\" "
483	printf "\n must end with .f, .f90, .F, or .c !"
484	printf "\n use \"..\" for more than one file and wildcards"
485	printf "\n -s LM compiles all locally modified files"
486	printf "\n -S config file interpreted by shellscript ---"
487	printf "\n -t allowed cpu-time in seconds (batch) 0"
488	printf "\n -T tasks per node depending on -h"
489	printf "\n -u username on remote machine \"\" "
490	printf "\n -v no prompt for confirmation ---"
491	printf "\n -w maximum parallel io streams as given by -X"
492	printf "\n -x tracing of mrun for debug purposes ---"
493	printf "\n -X # of processors (on parallel machines) 1"
494	printf "\n -y add appendix \"_O\" to all local output"
495	printf "\n files (ocean precursor runs followed by"
496	printf "\n coupled atmosphere-ocean runs) ---"
497	printf "\n -Y run coupled model, \"#1 #2\" with"
498	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
499	printf "\n -z disable a priori parameter file check ---"
500	printf "\n -Z skip combine_plot_fields at the end of "
501	printf "\n the simulation ---"
502	printf "\n "
503	printf "\n Possible values of positional parameter <modus>:"
504	printf "\n \"?\" - this outline \n\n") \| more
505	exit
506	elif [[ "$1" != "" ]]
507	then
508	printf "\n +++ positional parameter $1 unknown \n"
509	locat=parameter; exit
510	fi
511
512
513
514	# KURZE STARTMELDUNG
515	printf "\n*** $version "
516	printf "\n will be executed. Please wait ..."
517
518
519
520	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
521	if [[ ! -f $config_file ]]
522	then
523	printf "\n\n +++ configuration file: "
524	printf "\n $config_file"
525	printf "\n does not exist"
526	locat=connect; exit
527	fi
528
529
530	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
531	line=""
532	grep "%host_identifier" $config_file > tmp_mrun
533	while read line
534	do
535	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
536	then
537	HOSTNAME=`echo $line \| cut -d" " -s -f2`
538	host_identifier=`echo $line \| cut -d" " -s -f3`
539	if [[ $localhost_realname = $HOSTNAME ]]
540	then
541	localhost=$host_identifier
542	break
543	fi
544	fi
545	done < tmp_mrun
546
547	if [[ "$localhost" = "" ]]
548	then
549	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
550	printf "\n for local host \"$localhost_realname\"."
551	printf "\n Please add line"
552	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
553	printf "\n to the configuration file."
554	locat=localhost; exit
555	fi
556
557
558	# HOSTSPEZIFISCHE VARIABLEN SETZEN
559	case $localhost_realname in
560	(r1\|r2\|h01\|b01) archive_system=tivoli;;
561	(cs*) archive_system=ut;;
562	(fimm.bccs.uib.no) fimm=true;;
563	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
564	(scirocco) scirocco=true;;
565	esac
566
567
568
569	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
570	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
571	[[ "$afname" = "" ]] && afname=$fname
572
573
574	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
575	if [[ "$run_mode" != "" ]]
576	then
577	input_list="$input_list $run_mode"
578	output_list="$output_list $run_mode"
579	fi
580
581
582	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
583	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
584	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
585	# STARTET)
586	if [[ "$fromhost" = "" ]]
587	then
588	fromhost=$localhost
589	fi
590
591
592	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
593	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
594	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
595	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
596	if [[ -n $host && "$host" != $localhost ]]
597	then
598	do_batch=true
599	do_remote=true
600	case $host in
601	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
602	(*) printf "\n"
603	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
604	printf "\n is not available"
605	locat=nqs; (( iec = 0 )); exit;;
606	esac
607	else
608	host=$localhost
609	fi
610
611
612	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
613	if [[ -n $additional_conditions ]]
614	then
615	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
616	cond1=`echo $additional_conditions \| cut -d" " -f1`
617	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
618	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
619	if [[ -n $dummy ]]
620	then
621	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
622	locat=options; exit
623	fi
624	block=_$cond1
625	[[ -n $cond2 ]] && block=${block}_$cond2
626	fi
627
628
629	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
630	if [[ $run_coupled_model = true ]]
631	then
632
633	if [[ -n $coupled_dist ]]
634	then
635
636	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
637	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
638
639	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
640	then
641
642	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
643	printf "\n PEs (total) : $numprocs"
644	printf "\n PEs (atmosphere): $numprocs_atmos"
645	printf "\n PEs (ocean) : $numprocs_ocean"
646	locat=coupling; exit
647
648	fi
649
650	else
651
652	(( numprocs_ocean = $numprocs / 2 ))
653	(( numprocs_atmos = $numprocs / 2 ))
654
655	fi
656	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
657
658	# GET coupled_mode FROM THE CONFIG FILE
659	line=""
660	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
661	while read line
662	do
663	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
664	then
665	coupled_mode="mpi2"
666	fi
667	done < tmp_mrun
668
669	fi
670
671
672	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
673	# ARCHIVIERUNG FEHLGESCHLAGEN IST
674	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
675	then
676	if [[ $ignore_archive_error = false ]]
677	then
678	printf "\n +++ data archiving of previous run failed"
679	printf "\n see directory \~/job_queue on remote machine"
680	locat=archive; exit
681	else
682	printf "\n +++ warning: data archiving in a previous run failed"
683	printf "\n MRUN continues, trying to get backup copy"
684	fi
685	fi
686
687
688	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
689	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
690	mrun_memory=$memory
691	mrun_group_number=$group_number
692	mrun_cpumax=$cpumax
693	mrun_numprocs=$numprocs
694
695
696	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
697	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
698	if [[ "$read_from_config" = false ]]
699	then
700
701	[[ $silent = false ]] && printf "\n Reading the configuration file... "
702	while read zeile
703	do
704	[[ $silent = false ]] && printf "."
705
706
707	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
708	# ERSETZEN
709	eval zeile=\"$zeile\"
710
711
712	# INTERPRETATION DER ZEILE
713	if [[ "$(echo $zeile)" = "" ]]
714	then
715	# LEERZEILE, KEINE AKTION
716	continue
717
718	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
719	then
720
721	# ZEILE IST KOMMENTARZEILE
722	true
723
724	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
725	then
726
727	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
728	zeile=$(echo $zeile \| cut -c2-)
729	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
730	var=`echo $zeile \| cut -d" " -f1`
731	value=`echo $zeile \| cut -d" " -s -f2`
732	for_host=`echo $zeile \| cut -d" " -s -f3`
733	for_cond1=`echo $zeile \| cut -d" " -s -f4`
734	for_cond2=`echo $zeile \| cut -d" " -s -f5`
735
736	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
737	then
738
739	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
740	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
741	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
742
743
744	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
745	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
746	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
747	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
748	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
749	# KONFIGURATIONSDATEI
750	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
751	then
752	eval $var=\$value
753
754	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
755	if [[ $do_trace = true ]]
756	then
757	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
758	fi
759	fi
760
761	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
762	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
763	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
764	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
765	if [[ $var = host ]]
766	then
767	if [[ -n $host && "$host" != $localhost ]]
768	then
769	do_batch=true
770	do_remote=true
771	case $host in
772	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
773	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
774	printf "\n is not available"
775	locat=nqs; exit;;
776	esac
777	else
778	host=$localhost
779	fi
780	fi
781
782	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
783	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
784	# DEN PROGRAMMEN BENOETIGT WERDEN
785	export $var
786	fi
787
788
789
790
791	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
792	then
793
794	# ZEILE DEFINIERT ERROR-KOMMANDO
795	(( iec = iec + 1 ))
796	zeile=$(echo $zeile \| cut -c4-)
797	err_command[$iec]="$zeile"
798
799	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
800	then
801
802	# ZEILE DEFINIERT INPUT-KOMMANDO
803	(( iic = iic + 1 ))
804	zeile=$(echo $zeile \| cut -c4-)
805	in_command[$iic]="$zeile"
806
807	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
808	then
809
810	# ZEILE DEFINIERT OUTPUT-KOMMANDO
811	(( ioc = ioc + 1 ))
812	zeile=$(echo $zeile \| cut -c4-)
813	out_command[$ioc]="$zeile"
814
815	else
816
817	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
818	# s2a: in/out - Feld
819	# s2b: loc - Feld (optional)
820	# s2c: tr/ar - Feld (optional)
821	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
822	s1=`echo $zeile \| cut -d" " -f1`
823	s2=`echo $zeile \| cut -d" " -s -f2`
824	s2a=$(echo $s2 \| cut -d":" -f1)
825	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
826	then
827	s2b=""
828	s2c=""
829	else
830	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
831	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
832	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
833	fi
834	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
835	s3=`echo $zeile \| cut -d" " -f3`
836	s4=`echo $zeile \| cut -d" " -s -f4`
837	s5=`echo $zeile \| cut -d" " -s -f5`
838	s6=`echo $zeile \| cut -d" " -s -f6`
839
840
841	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
842	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
843	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
844	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
845	# HANDEN SEIN MUSS (D.H. s2b = loc)
846	IFSALT="$IFS"; IFS="$IFS:"
847	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
848	then
849	found=false
850	for actual in $input_list
851	do
852	for formal in $s3
853	do
854	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
855	done
856	done
857	if [[ $found = true ]]
858	then
859	(( iin = iin + 1 ))
860	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
861	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
862	extin[$iin]=$s6
863	fi
864	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
865	then
866	found=false
867	for actual in $output_list
868	do
869	for formal in $s3
870	do
871	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
872	done
873	done
874	if [[ $found = true ]]
875	then
876	(( iout = iout + 1 ))
877	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
878	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
879	fi
880	elif [[ "$s2a" != in && "$s2a" != out ]]
881	then
882	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
883	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
884	locat=connect; exit
885	fi
886	IFS="$IFSALT"
887	fi
888	done < $config_file
889
890	else
891
892
893	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
894	[[ $silent = false ]] && printf "..."
895	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
896	export interpreted_config_file=.icf.$RANDOM
897
898
899
900	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
901	# VERFUEGUNG STELLEN
902	cat > .mrun_environment << %%END%%
903	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
904	config_file = '$config_file', do_remote = '$do_remote',
905	do_trace = '$do_trace', host = '$host',
906	input_list = '$input_list', icf = '$interpreted_config_file',
907	localhost = '$localhost', output_list = '$output_list' /
908
909	%%END%%
910
911	if [[ $localhost_realname = "sx-fep" ]]
912	then
913	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
914	else
915
916	if [[ "$host" != $localhost ]]
917	then
918
919	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
920	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
921	if [[ $? != 0 ]]
922	then
923	printf "\n\n +++ no interpret_config found"
924	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
925	locat=interpret_config; exit
926	fi
927	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
928	$interpret_config_executable
929
930	else
931
932	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
933	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
934	then
935	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
936	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
937	locat=interpret_config; exit
938	else
939	interpret_config${block}.x
940	fi
941
942	fi
943	fi
944	rm .mrun_environment
945
946
947	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
948	chmod u+x $interpreted_config_file
949	export PATH=$PATH:.
950	. $interpreted_config_file
951	rm $interpreted_config_file
952
953	fi
954
955
956	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
957	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
958	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
959	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
960	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
961	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
962	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
963
964
965	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
966	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
967	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
968	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
969	if [[ "$SOURCES_COMPLETE" = "" ]]
970	then
971
972	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
973	# VEREINBART WURDE
974	source_path=""
975	line=""
976	grep "%source_path" $config_file > tmp_mrun
977	while read line
978	do
979	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
980	then
981	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
982	then
983	global_source_path=`echo $line \| cut -d" " -f2`
984	fi
985	fi
986	done < tmp_mrun
987
988	line=""
989	found=false
990	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
991	while read line
992	do
993	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
994	then
995	if [[ $found = true ]]
996	then
997	printf "\n\n +++ more than one source path found in configuration file"
998	printf "\n for local host \"$localhost\" "
999	locat=source_path; exit
1000	fi
1001	source_path=`echo $line \| cut -d" " -f2`
1002	found=true
1003	fi
1004	done < tmp_mrun
1005	rm tmp_mrun
1006
1007	if [[ "$source_path" = "" ]]
1008	then
1009	if [[ "$global_source_path" != "" ]]
1010	then
1011	source_path=$global_source_path
1012	else
1013	printf "\n\n +++ no source path found in configuration file"
1014	printf "\n for local host \"$localhost\" "
1015	locat=source_path; exit
1016	fi
1017	fi
1018	eval source_path=$source_path
1019
1020	if [[ ! -d $source_path ]]
1021	then
1022	printf "\n\n +++ source path \"$source_path\" on local host"
1023	printf "\n \"$localhost\" does not exist"
1024	locat=source_path; exit
1025	fi
1026
1027	fi
1028
1029
1030	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1031	# DURCH OPTION -G MITGETEILT)
1032	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1033	then
1034	global_revision=`svnversion $source_path 2>/dev/null`
1035	global_revision="Rev: $global_revision"
1036	fi
1037
1038
1039	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1040	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1041	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1042	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1043	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1044	if [[ -n $host && "$host" != $localhost ]]
1045	then
1046	do_batch=true
1047	do_remote=true
1048	case $host in
1049	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1050	(*) printf "\n"
1051	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1052	printf "\n is not available"
1053	locat=nqs; (( iec = 0 )); exit;;
1054	esac
1055	else
1056	host=$localhost
1057	fi
1058
1059
1060	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1061	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1062	then
1063
1064	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1065	if [[ ! -n $numprocs ]]
1066	then
1067	printf "\n"
1068	printf "\n +++ option \"-K parallel\" requires additional specification"
1069	printf "\n of the number of processors to be used by"
1070	printf "\n mrun-option \"-X\" or by environment-variable"
1071	printf "\n \"numprocs\" in the configuration file"
1072	locat=numprocs; (( iec = 0 )); exit
1073	fi
1074
1075	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1076	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1077	# GESAMTPROZESSORANZAHL IST
1078	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1079	then
1080	printf "\n"
1081	printf "\n +++ option \"-T\" (tasks per node) is missing"
1082	printf "\n set -T option or define tasks_per_node in the config file"
1083	locat=tasks_per_node; (( iec = 0 )); exit
1084	fi
1085
1086	if (( numprocs < tasks_per_node ))
1087	then
1088	printf "\n"
1089	printf "\n +++ tasks per node (-T) cannot exceed total number of processors (-X)"
1090	printf "\n given values: -T $tasks_per_node -X $numprocs"
1091	locat=tasks_per_node; (( iec = 0 )); exit
1092	fi
1093
1094	if [[ $host != lcflow && $host != lcxt5m ]]
1095	then
1096	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1097	(( ival = $tasks_per_node ))
1098	(( pes = numprocs ))
1099	(( ii = pes / ival ))
1100	(( remaining_pes = pes - ii * ival ))
1101	if (( remaining_pes > 0 ))
1102	then
1103	printf "\n"
1104	printf "\n +++ WARNING: tasks per node (option \"-T\") is not an integral"
1105	printf "\n divisor of the total number of processors (option \"-X\")"
1106	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1107	printf "\n One of the nodes is filled with $remaining_pes instead of $tasks_per_node tasks"
1108	(( nodes = nodes + 1 ))
1109	fi
1110	fi
1111
1112
1113	# IBMY HAT NUR EINEN KNOTEN
1114	if [[ $host = ibmy ]]
1115	then
1116	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1117	then
1118	printf "\n"
1119	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1120	printf "\n total number of processors (option \"-X\")"
1121	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1122	locat=tasks_per_node; (( iec = 0 )); exit
1123	fi
1124	fi
1125
1126
1127	# SETTINGS FOR SUBJOB-COMMAND
1128	OOPT="-O $threads_per_task"
1129
1130	# GESAMTZAHL DER KNOTEN BESTIMMEN
1131	if [[ "$tasks_per_node" != "" ]]
1132	then
1133	TOPT="-T $tasks_per_node"
1134	fi
1135
1136	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1137	# SETZEN
1138	if [[ $node_usage = default ]]
1139	then
1140	if [[ $host = ibms ]]
1141	then
1142	node_usage=shared
1143	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1144	then
1145	node_usage=singlejob
1146	else
1147	node_usage=not_shared
1148	fi
1149	fi
1150
1151	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1152	then
1153	printf "\n"
1154	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1155	printf "\n \"shared\" or \"not_shared\""
1156	locat=tasks_per_node; (( iec = 0 )); exit
1157	fi
1158
1159	fi
1160
1161	# PRUEFEN, OB HOSTFILE EXISTIERT
1162	if [[ -n $hostfile ]]
1163	then
1164	if [[ ! -f $hostfile ]]
1165	then
1166	printf "\n"
1167	printf "\n +++ hostfile \"$hostfile\" does not exist"
1168	locat=hostfile; exit
1169	fi
1170	fi
1171
1172	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1173	if [[ $host = ibmy && $do_remote = false ]]
1174	then
1175	if [[ ! -f $HOME/.rhosts ]]
1176	then
1177	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1178	printf "\n\n *** file:"
1179	printf "\n $HOME/.rhosts"
1180	printf "\n was created\n"
1181	fi
1182	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1183	then
1184	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1185	printf "\n\n *** file:"
1186	printf "\n $HOME/.rhosts"
1187	printf "\n was extended by the name of the current host\n"
1188	fi
1189	fi
1190
1191
1192	# Set default value for the maximum number of parallel io streams
1193	if [[ "$maximum_parallel_io_streams" = "" ]]
1194	then
1195	maximum_parallel_io_streams=$numprocs
1196	fi
1197
1198
1199	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1200	if [[ "$scp_port" != "" ]]
1201	then
1202	PORTOPT="-P $scp_port"
1203	SSH_PORTOPT="-p $scp_port"
1204	fi
1205
1206
1207	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1208	if [[ $queue = none ]]
1209	then
1210	case $host in
1211	(ibmh) queue=cluster;;
1212	(ibmkisti) queue=class.32plus;;
1213	(ibmy) queue=parallel;;
1214	(lckiaps) queue=normal;;
1215	(lckyoto) queue=ph;;
1216	(lckyuh) queue=fx-single;;
1217	(lckyut) queue=cx-single;;
1218	(lcsgib) queue=testq;;
1219	(lcsgih) queue=testq;;
1220	(lctit) queue=S;;
1221	(nech) queue=none;;
1222	(necriam) queue=SP;;
1223	(unics) queue=unics;;
1224	esac
1225	fi
1226
1227
1228	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1229	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1230	# ERMITTELN
1231	(( i = 0 ))
1232	while (( i < iin ))
1233	do
1234	(( i = i + 1 ))
1235	(( maxcycle = 0 ))
1236
1237	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1238	if [[ "${actionin[$i]}" = di ]]
1239	then
1240	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1241	# REM-MASCHINE AUSWERTEN
1242	eval filename=${pathin[$i]}/${endin[$i]}
1243	else
1244	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1245	# REM-MASCHINE AUSWERTEN
1246	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1247	fi
1248	eval pathname=${pathin[$i]}
1249
1250	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1251	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1252	then
1253	filename_input=$filename
1254	fi
1255
1256	# PRUEFEN AUF VORHANDENSEIN
1257	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1258	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1259	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1260	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1261	then
1262	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1263	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1264	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1265	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1266	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1267	if [[ "${transin[$i]}" != "locopt" ]]
1268	then
1269	printf "\n\n +++ INPUT-file: "
1270	if [[ "${extin[$i]}" = "" ]]
1271	then
1272	printf "\n $filename"
1273	else
1274	printf "\n $filename.${extin[$i]}"
1275	fi
1276	printf "\n does not exist\n"
1277	locat=input; exit
1278	else
1279	transin[$i]="unavailable"
1280	fi
1281	else
1282
1283	# ZYKLUSNUMMER FESTSTELLEN
1284	ls -1 -d $filename > filelist 2>/dev/null
1285	ls -1 -d $filename.* >> filelist 2>/dev/null
1286	while read zeile
1287	do
1288	cycle=$(echo $zeile \| cut -f2 -d".")
1289	if [[ "$cycle" = "$zeile" ]]
1290	then
1291	(( icycle = 0 ))
1292	elif [[ "$cycle" = "${extin[$i]}" ]]
1293	then
1294	(( icycle = 0 ))
1295	else
1296	(( icycle = $cycle ))
1297	fi
1298	if (( icycle > maxcycle ))
1299	then
1300	(( maxcycle = icycle ))
1301	file_to_be_used=$zeile
1302	fi
1303	done <filelist
1304	rm filelist
1305
1306	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1307	if (( maxcycle > 0 ))
1308	then
1309	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1310	then
1311	filename=${filename}.$maxcycle.${extin[$i]}
1312	else
1313	filename=${filename}.$maxcycle
1314	fi
1315	else
1316	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1317	then
1318	filename=${filename}.${extin[$i]}
1319	fi
1320	fi
1321
1322	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1323	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1324	absnamein[$i]=$filename
1325	if (( maxcycle > 0 ))
1326	then
1327	if [[ "${actionin[$i]}" = di ]]
1328	then
1329	frelin[$i]=${endin[$i]}.$maxcycle
1330	else
1331	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1332	fi
1333	else
1334	if [[ "${actionin[$i]}" = di ]]
1335	then
1336	frelin[$i]=${endin[$i]}
1337	else
1338	frelin[$i]=${afname}${endin[$i]}
1339	fi
1340	fi
1341
1342	fi
1343	done
1344
1345	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1346	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1347	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1348	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1349	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1350	(( i = 0 ))
1351	while (( i < iout ))
1352	do
1353	(( i = i + 1 ))
1354	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1355	then
1356	if [[ "${actionout[$i]}" = tr ]]
1357	then
1358	actionout[$i]=""
1359	elif [[ "${actionout[$i]}" = trpe ]]
1360	then
1361	actionout[$i]=pe
1362	elif [[ "${actionout[$i]}" = tra ]]
1363	then
1364	actionout[$i]=a
1365	fi
1366	(( maxcycle = 0 ))
1367	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1368	eval catalogname=${pathout[$i]}
1369	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1370	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1371	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1372	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1373	then
1374
1375	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1376	if cat /dev/null > $filename
1377	then
1378	rm $filename
1379	else
1380
1381	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1382	if [[ ! -d $catalogname ]]
1383	then
1384	if mkdir -p $catalogname
1385	then
1386	printf "\n\n *** directory:"
1387	printf "\n $catalogname"
1388	printf "\n was created\n"
1389	else
1390	printf "\n\n +++ OUTPUT-file:"
1391	printf "\n $filename"
1392	printf "\n cannot be created, because directory does not exist"
1393	printf "\n and cannot be created either"
1394	printf "\n"
1395	locat=output ; exit
1396	fi 2>/dev/null
1397	else
1398	printf "\n\n +++ OUTPUT-file:"
1399	printf "\n $filename"
1400	printf "\n cannot be created, although directory exists"
1401	printf "\n"
1402	locat=output ; exit
1403	fi
1404	fi 2>/dev/null
1405	else
1406
1407	# ZYKLUSNUMMER FESTSTELLEN
1408	ls -1 -d $filename > filelist 2>/dev/null
1409	ls -1 -d $filename.* >> filelist 2>/dev/null
1410	while read zeile
1411	do
1412	cycle=$(echo $zeile \| cut -f2 -d".")
1413	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1414	then
1415	(( icycle = 1 ))
1416	else
1417	(( icycle = $cycle + 1 ))
1418	fi
1419	if (( icycle > maxcycle ))
1420	then
1421	(( maxcycle = icycle ))
1422	fi
1423	done <filelist
1424	rm filelist
1425	fi
1426
1427	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1428	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1429	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1430	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1431	if [[ "${actionout[$i]}" != a ]]
1432	then
1433	if (( maxcycle > 0 ))
1434	then
1435	filename=${filename}.$maxcycle
1436	if cat /dev/null > $filename
1437	then
1438	rm $filename
1439	else
1440	printf "\n +++ OUTPUT-file:"
1441	printf "\n $filename"
1442	printf "\n cannot be created"
1443	locat=output ; exit
1444	fi
1445	fi
1446	else
1447	(( maxcycle = maxcycle - 1 ))
1448	if (( maxcycle > 0 ))
1449	then
1450	filename=${filename}.$maxcycle
1451	fi
1452	fi
1453
1454	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1455	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1456	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1457	pathout[$i]=$filename
1458	if (( maxcycle > 0 ))
1459	then
1460	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1461	else
1462	frelout[$i]=${fname}${endout[$i]}
1463	fi
1464
1465	fi
1466	done
1467
1468
1469	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1470	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1471	then
1472	if [[ "$dvr_inc" = "" ]]
1473	then
1474	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1475	printf "\n This is required for the dvrp_graphics package.\n"
1476	locat=dvr; exit
1477	fi
1478	if [[ "$dvr_lib" = "" ]]
1479	then
1480	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1481	printf "\n This is required for the dvrp_graphics package.\n"
1482	locat=dvr; exit
1483	fi
1484	fi
1485
1486
1487	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1488	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1489	# UEBERSETZT ZU WERDEN)
1490	if [[ "$mainprog" = "" && "$executable" = "" ]]
1491	then
1492	printf "\n +++ neither main program nor executable defined"
1493	locat=source; exit
1494	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1495	then
1496	printf "\n +++ main program as well as executable defined"
1497	locat=source; exit
1498	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1499	then
1500	do_compile=false
1501	fi
1502
1503
1504	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1505	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1506	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1507	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1508	then
1509	rm -rf SOURCES_FOR_RUN_$fname
1510	mkdir SOURCES_FOR_RUN_$fname
1511	fi
1512
1513
1514	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1515	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1516	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1517	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1518	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1519	then
1520
1521	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1522
1523	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1524	then
1525
1526	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1527	source_list=""
1528	cd $source_path
1529
1530
1531	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1532	if [[ ! -d .svn ]]
1533	then
1534	printf "\n\n +++ source directory"
1535	printf "\n \"$source_path\" "
1536	printf "\n is not under control of \"subversion\"."
1537	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1538	fi
1539
1540
1541	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1542	Filenames=""
1543	svn status > tmp_mrun
1544	while read line
1545	do
1546	firstc=`echo $line \| cut -c1`
1547	if [[ $firstc = M \|\| $firstc = "?" ]]
1548	then
1549	Name=`echo "$line" \| cut -c8-`
1550	extension=`echo $Name \| cut -d. -f2`
1551	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1552	then
1553	Filenames="$Filenames "$Name
1554	fi
1555	fi
1556	done < tmp_mrun
1557
1558
1559	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1560	for dateiname in $Filenames
1561	do
1562	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1563	source_list=$source_list"$dateiname "
1564	done
1565
1566	cd - > /dev/null
1567
1568
1569	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1570	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1571	# VORHANDEN
1572	elif [[ "$source_list" != "" && $restart_run != true ]]
1573	then
1574
1575	cd $source_path
1576
1577	for filename in $source_list
1578	do
1579
1580	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1581	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1582	then
1583	printf "\n +++ source code file: $filename"
1584	printf "\n must not contain (\"/\") "
1585	locat=source; exit
1586	fi
1587
1588	if [[ ! -f $filename ]]
1589	then
1590	printf "\n +++ source code file: $filename"
1591	printf "\n does not exist"
1592	locat=source; exit
1593	else
1594	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1595	fi
1596
1597	done
1598
1599	cd - > /dev/null
1600
1601	fi
1602
1603
1604	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1605	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1606	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1607	if [[ $restart_run != true ]]
1608	then
1609
1610	if [[ ! -f "$source_path/$mainprog" ]]
1611	then
1612	printf "\n\n +++ main program: $mainprog"
1613	printf "\n does not exist in source directory"
1614	printf "\n \"$source_path\"\n"
1615	locat=source; exit
1616	else
1617	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1618	then
1619	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1620	source_list=${mainprog}" $source_list"
1621	fi
1622	fi
1623	fi
1624
1625
1626	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1627	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1628	if [[ "$restart_run" != true ]]
1629	then
1630	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1631	if [[ ! -f $makefile ]]
1632	then
1633	printf "\n +++ file \"$makefile\" does not exist"
1634	locat=make; exit
1635	else
1636	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1637	fi
1638	fi
1639
1640
1641	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1642	if [[ $restart_run != true && "$add_source_path" != "" ]]
1643	then
1644
1645	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1646	if [[ ! -d $add_source_path ]]
1647	then
1648	printf "\n\n +++ WARNING: additional source code directory"
1649	printf "\n \"$add_source_path\" "
1650	printf "\n does not exist or is not a directory."
1651	printf "\n No source code will be used from this directory!\n"
1652	add_source_path=""
1653	if [[ $silent == false ]]
1654	then
1655	sleep 3
1656	fi
1657	else
1658
1659	cd $add_source_path
1660	found=false
1661
1662	Names=$(ls -1 *.f90 2>&1)
1663	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1664	Names=$(ls -1 *.F90 2>&1)
1665	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1666	Names=$(ls -1 *.F 2>&1)
1667	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1668	Names=$(ls -1 *.f 2>&1)
1669	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1670	Names=$(ls -1 *.c 2>&1)
1671	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1672
1673	cd - > /dev/null
1674	cd SOURCES_FOR_RUN_$fname
1675
1676	# COPY MAKEFILE IF EXISTING
1677	if [[ -f $add_source_path/Makefile ]]
1678	then
1679	printf "\n\n *** user Makefile from directory"
1680	printf "\n \"$add_source_path\" is used \n"
1681	if [[ $silent == false ]]
1682	then
1683	sleep 1
1684	fi
1685	cp $add_source_path/Makefile .
1686	fi
1687
1688	for dateiname in $AddFilenames
1689	do
1690	if [[ -f $dateiname ]]
1691	then
1692	printf "\n +++ source code file \"$dateiname\" found in additional"
1693	printf "\n source code directory \"$add_source_path\" "
1694	printf "\n but was also given with option \"-s\" which means that it should be taken"
1695	printf "\n from directory \"$source_path\"."
1696	locat=source; exit
1697	fi
1698
1699	cp $add_source_path/$dateiname .
1700	source_list="$source_list $dateiname"
1701
1702	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1703	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1704	then
1705	printf "\n\n +++ user file \"$dateiname\" "
1706	printf "\n is not listed in Makefile \n"
1707	locat=source; exit
1708	else
1709
1710	# Default User-Interface von der Liste entfernen, falls Datei
1711	# ein User-Interface enthaelt
1712	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1713	# then
1714	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1715	# then
1716	# rm -rf user_interface.f90
1717	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1718	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1719	# printf "\n since a user-interface is found in file"
1720	# printf "\n \"$add_source_path/$dateiname\" \n"
1721	# sleep 3
1722	# else
1723	if [[ $found = false ]]
1724	then
1725	found=true
1726	printf "\n\n *** following user file(s) added to the"
1727	printf " files to be translated:\n "
1728	fi
1729	printf "$dateiname "
1730	if [[ $silent == false ]]
1731	then
1732	sleep 0.5
1733	fi
1734
1735	fi
1736	done
1737	[[ $found = true ]] && printf "\n"
1738	cd - > /dev/null
1739	fi
1740	fi
1741
1742
1743	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1744	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1745	if [[ $restart_run != true && -n $package_list ]]
1746	then
1747
1748	cd $source_path
1749
1750	for package in $package_list
1751	do
1752
1753	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1754
1755	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1756	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1757	# LIEFERT
1758	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1759
1760
1761	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1762	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1763	for source_list_name in $package_source_list
1764	do
1765	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1766	then
1767
1768	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1769	ending=`echo $source_list_name \| cut -f2 -d.`
1770	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1771	then
1772	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1773	source_list="$source_list $source_list_name"
1774	fi
1775	fi
1776	done
1777	done
1778
1779	cd - > /dev/null
1780	fi
1781
1782
1783	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1784	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1785	# if [[ "$restart_run" != true ]]
1786	# then
1787	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1788	# if [[ ! -f $makefile ]]
1789	# then
1790	# printf "\n +++ file \"$makefile\" does not exist"
1791	# locat=make; exit
1792	# else
1793	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1794	# fi
1795	# fi
1796
1797	fi # do_compile=true
1798
1799
1800	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1801	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1802	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1803	then
1804
1805	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1806	# ZUSAMMENSETZEN
1807	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1808	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1809	then
1810	cpp_options="${cpp_options},-D__ibm=__ibm"
1811	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1812	then
1813	cpp_options="$cpp_options -D__nec"
1814	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1815	then
1816	cpp_options="$cpp_options -D__lc"
1817	else
1818	cpp_options="$cpp_options -D__$localhost"
1819	fi
1820
1821	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1822	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1823	then
1824	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1825	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1826	else
1827	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1828	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1829	fi
1830
1831	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1832	if [[ -n $package_list ]]
1833	then
1834	for package in $package_list
1835	do
1836	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1837	then
1838	if [[ $package != "dvrp_graphics+1PE" ]]
1839	then
1840	cpp_options="${cpp_options},-D__$package=__$package"
1841	else
1842	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1843	export use_seperate_pe_for_dvrp_output=true
1844	fi
1845	else
1846	if [[ $package != "dvrp_graphics+1PE" ]]
1847	then
1848	cpp_options="$cpp_options -D__$package"
1849	else
1850	cpp_options="$cpp_options -D__dvrp_graphics"
1851	export use_seperate_pe_for_dvrp_output=true
1852	fi
1853	fi
1854	done
1855	fi
1856
1857	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1858	if [[ -n $cpp_opts ]]
1859	then
1860	for popts in $cpp_opts
1861	do
1862	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1863	then
1864	cpp_options="${cpp_options},-D__$popts=__$popts"
1865	else
1866	cpp_options="$cpp_options -D__$popts"
1867	fi
1868	done
1869	fi
1870
1871	else
1872
1873
1874	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1875	if [[ $do_remote = false ]]
1876	then
1877	if [[ ! -f $executable ]]
1878	then
1879	printf "\n +++ executable file: $executable"
1880	printf "\n does not exist"
1881	locat=executable; exit
1882	fi
1883	fi
1884	fi
1885
1886
1887	# JOBMODUS FESTSTELLEN
1888	if [[ "$ENVIRONMENT" = BATCH ]]
1889	then
1890	jobmo=BATCH
1891	else
1892	jobmo=INTERACTIVE
1893	fi
1894
1895
1896	# no interactive runs on lctit
1897	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1898	then
1899	printf "\n +++ no interactive runs allowed on host \"$host\" "
1900	printf "\n please submit batch job using mrun option \"-b\" \n"
1901	locat=normal; exit
1902	fi
1903
1904
1905	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1906	# DURCH BENUTZER ANDERWEITIG VEREINBART
1907	if [[ "$compiler_name" = "" ]]
1908	then
1909
1910	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1911	locat=compiler_name; exit
1912
1913	fi
1914
1915
1916	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1917	[[ $localhost = necriam ]] && compiler_name=mpif90
1918
1919
1920
1921	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1922	kennung=$RANDOM
1923	if [[ "$tmp_user_catalog" = "" ]]
1924	then
1925	if [[ $localhost = ibmh ]]
1926	then
1927	tmp_user_catalog=$SCRATCH
1928	elif [[ $localhost = nech ]]
1929	then
1930	tmp_user_catalog=$WRKSHR
1931	else
1932	tmp_user_catalog=/tmp
1933	fi
1934	fi
1935	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1936
1937
1938	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1939	# BESTIMMEN
1940	if [[ "$tmp_data_catalog" = "" ]]
1941	then
1942	if [[ $localhost = nech ]]
1943	then
1944	tmp_data_catalog=$WRKSHR/mrun_restart_data
1945	else
1946	tmp_data_catalog=/tmp/mrun_restart_data
1947	fi
1948	fi
1949
1950
1951	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1952	# ERSETZEN
1953	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1954	then
1955	eval fopts=\"$fopts\"
1956	eval lopts=\"$lopts\"
1957	fi
1958
1959
1960
1961	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1962	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1963	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1964	ROPTS="$ropts"
1965	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1966	# then
1967	XOPT="-X $numprocs"
1968	# fi
1969
1970
1971
1972	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1973	# GRAMM BENOETIGT
1974	done=false
1975	while [[ $done = false ]]
1976	do
1977	cputime=$cpumax
1978	if (( $cputime == 0 ))
1979	then
1980	if [[ $do_batch = true ]]
1981	then
1982	printf "\n +++ cpu-time is undefined"
1983	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1984	printf "\n >>> "
1985	read cputime 1>/dev/null 2>&1
1986	else
1987	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1988	fi
1989	else
1990	done=true
1991	fi
1992	cpumax=$cputime
1993	done
1994
1995	(( minuten = cputime / 60 ))
1996	(( sekunden = cputime - minuten * 60 ))
1997
1998
1999	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2000	if [[ $do_batch = true ]]
2001	then
2002	done=false
2003	while [[ $done = false ]]
2004	do
2005	if (( memory == 0 ))
2006	then
2007	printf "\n +++ memory demand is undefined"
2008	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2009	printf "\n >>> "
2010	read memory 1>/dev/null 2>&1
2011	else
2012	done=true
2013	fi
2014	done
2015	fi
2016
2017
2018	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2019	if [[ $do_remote = true && -z $remote_username ]]
2020	then
2021	while [[ -z $remote_username ]]
2022	do
2023	printf "\n +++ username on remote host \"$host\" is undefined"
2024	printf "\n >>> Please type username:"
2025	printf "\n >>> "
2026	read remote_username
2027	done
2028	mc="$mc -u$remote_username"
2029	fi
2030
2031	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2032	if [[ "$login_init_cmd" != "" ]]
2033	then
2034	export init_cmds="${login_init_cmd};"
2035	fi
2036
2037
2038	# set module load command and export for subjob
2039	if [[ "$modules" != "" ]]
2040	then
2041	if [[ $host = lctit ]]
2042	then
2043	export module_calls=". $modules"
2044	else
2045	export module_calls="module load ${modules};"
2046	fi
2047	fi
2048
2049	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2050	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2051	then
2052	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2053	then
2054	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2055	fi
2056	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2057	# then
2058	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2059	# echo "*** module_calls = $module_calls"
2060	# fi
2061	fi
2062
2063
2064	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2065	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2066	then
2067	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2068	then
2069	mpilib=mpt
2070	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2071	then
2072	mpilib=mvapich
2073	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2074	then
2075	mpilib=impi
2076	fi
2077	fi
2078
2079
2080
2081	###########################################################################
2082	# HEADER-AUSGABE
2083	###########################################################################
2084
2085
2086	calltime=$(date)
2087	printf "\n"
2088	# [[ $silent = false ]] && clear
2089	printf "#------------------------------------------------------------------------# \n"
2090	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2091	printf "\| \| \n"
2092	spalte1="called on:"; spalte2=$localhost_realname
2093	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2094	if [[ $local_compile = false ]]
2095	then
2096	if [[ $do_remote = true ]]
2097	then
2098	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2099	else
2100	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2101	fi
2102	else
2103	spalte1="compiling test only!"; spalte2=""
2104	fi
2105	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2106	if [[ -n $numprocs ]]
2107	then
2108	if [[ $run_coupled_model = false ]]
2109	then
2110	spalte1="number of PEs:"; spalte2=$numprocs
2111	else
2112	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2113	fi
2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2115	fi
2116	if [[ -n $tasks_per_node ]]
2117	then
2118	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2119	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2120	if (( remaining_pes > 0 ))
2121	then
2122	spalte1=" "; spalte2="one of the nodes only filled with $remaining_pes tasks"
2123	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2124	fi
2125	fi
2126	if [[ $maximum_parallel_io_streams != $numprocs ]]
2127	then
2128	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2130	fi
2131	if [[ $use_openmp = true ]]
2132	then
2133	spalte1="threads per task:"; spalte2="$threads_per_task"
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	fi
2136	printf "\| \| \n"
2137	if [[ $do_compile = true ]]
2138	then
2139	if [[ "$mopts" != "" ]]
2140	then
2141	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2142	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2143	zeile=$(echo "$mopts" \| cut -c46-)
2144	while [[ "$zeile" != "" ]]
2145	do
2146	spalte1=""
2147	spalte2=$(echo "$zeile" \| cut -c-45)
2148	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2149	zeile=$(echo "$zeile" \| cut -c46-)
2150	done
2151	fi
2152
2153	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2154	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2155	zeile=$(echo "$cpp_options" \| cut -c46-)
2156	while [[ "$zeile" != "" ]]
2157	do
2158	spalte1=""
2159	spalte2=$(echo "$zeile" \| cut -c-45)
2160	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2161	zeile=$(echo "$zeile" \| cut -c46-)
2162	done
2163
2164	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2165	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2166	zeile=$(echo "$fopts" \| cut -c46-)
2167	while [[ "$zeile" != "" ]]
2168	do
2169	spalte1=""
2170	spalte2=$(echo "$zeile" \| cut -c-45)
2171	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2172	zeile=$(echo "$zeile" \| cut -c46-)
2173	done
2174
2175	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2176	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2177	zeile=$(echo "$lopts" \| cut -c46-)
2178	while [[ "$zeile" != "" ]]
2179	do
2180	spalte1=""
2181	spalte2=$(echo "$zeile" \| cut -c-45)
2182	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2183	zeile=$(echo "$zeile" \| cut -c46-)
2184	done
2185
2186	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2187	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2188	zeile=$(echo "$modules" \| cut -c46-)
2189	while [[ "$zeile" != "" ]]
2190	do
2191	spalte1=""
2192	spalte2=$(echo "$zeile" \| cut -c-45)
2193	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2194	zeile=$(echo "$zeile" \| cut -c46-)
2195	done
2196
2197	spalte1="main program:"; spalte2=$mainprog
2198	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2199	else
2200	spalte1=executable:; spalte2=$executable
2201	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2202	fi
2203	printf "\| \| \n"
2204	spalte1="base name of files:"; spalte2=$fname
2205	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2206	if [[ $fname != $afname ]]
2207	then
2208	spalte1="base name of input files:"; spalte2=$afname
2209	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2210	fi
2211	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2212	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2213	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2214	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2215
2216	if [[ "$ocean_file_appendix" = true ]]
2217	then
2218	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2219	fi
2220
2221	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2222	then
2223	spalte1="memory demand / PE":; spalte2="$memory MB"
2224	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2225	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2226	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2227	fi
2228
2229	if [[ $do_compile = true ]]
2230	then
2231	printf "\| \| \n"
2232	printf "\| Files to be compiled: \| \n"
2233	zeile=$source_list
2234	while [[ "$zeile" != "" ]]
2235	do
2236	linestart=$(echo $zeile \| cut -c-70)
2237	printf "\| %-70s \| \n" "$linestart"
2238	zeile=$(echo "$zeile" \| cut -c71-)
2239	done
2240	fi
2241	printf "#------------------------------------------------------------------------#"
2242
2243
2244
2245	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2246	if [[ $do_trace = true ]]
2247	then
2248	(( i = 0 ))
2249	while (( i < iin ))
2250	do
2251	(( i = i + 1 ))
2252	if (( i == 1 ))
2253	then
2254	printf "\n\n >>> INPUT-file assignments:\n"
2255	fi
2256	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2257	done
2258	(( i = 0 ))
2259	while (( i < iout ))
2260	do
2261	(( i = i + 1 ))
2262	if (( i == 1 ))
2263	then
2264	printf "\n\n >>> OUTPUT-file assignments:\n"
2265	fi
2266	printf "\n ${localout[$i]} : ${pathout[$i]}"
2267	done
2268	(( i = 0 ))
2269	while (( i < iic ))
2270	do
2271	(( i = i + 1 ))
2272	if (( i == 1 ))
2273	then
2274	printf "\n\n >>> INPUT-commands:\n"
2275	fi
2276	printf "\n ${in_command[$i]}"
2277	done
2278	(( i = 0 ))
2279	while (( i < ioc ))
2280	do
2281	(( i = i + 1 ))
2282	if (( i == 1 ))
2283	then
2284	printf "\n\n >>> OUTPUT-commands:\n"
2285	fi
2286	printf "\n ${out_command[$i]}"
2287	done
2288	fi
2289
2290
2291	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2292	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2293	then
2294	antwort=dummy
2295	printf "\n\n"
2296	printf " >>> everything o.k. (y/n) ? "
2297	while read antwort
2298	do
2299	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2300	then
2301	printf " >>> everything o.k. (y/n) ? "
2302	else
2303	break
2304	fi
2305	done
2306	if [[ $antwort = n \|\| $antwort = N ]]
2307	then
2308	locat=user_abort; (( iec = 0 )); exit
2309	fi
2310	if [[ $do_batch = true ]]
2311	then
2312	printf " >>> batch-job will be created and submitted"
2313	else
2314	if [[ $local_compile = false ]]
2315	then
2316	printf " >>> MRUN will now continue to execute on this machine"
2317	else
2318	printf " >>> a test compilation will now be carried out on this machine"
2319	fi
2320	fi
2321	fi
2322
2323
2324	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2325	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2326	check_depository="${working_directory}/trunk/UTIL"
2327	check_sources="${working_directory}/tmp_check_namelist_files"
2328	skip_check=false
2329
2330	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2331	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2332	then
2333	skip_check=true
2334	reason="run on remote host or parameter file check has not been compiled."
2335	fi
2336	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2337	then
2338	skip_check=true
2339	reason="parameter file check has not been compiled."
2340	fi
2341
2342	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2343	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2344	then
2345	skip_check=true
2346	reason="serial run."
2347	fi
2348
2349	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2350	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2351	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2352	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2353	if [[ $check_namelist_files == false ]]
2354	then
2355	skip_check=true
2356	reason="-z option set."
2357	fi
2358
2359	if [[ $fromhost != $localhost ]]
2360	then
2361	skip_check=true
2362	reason="submitting host is local host."
2363	fi
2364
2365	if [[ $run_coupled_model == true ]]
2366	then
2367	skip_check=true
2368	reason="coupled run."
2369	fi
2370
2371	if [[ $restart_run == true ]]
2372	then
2373	skip_check=true
2374	reason="restart run."
2375	fi
2376
2377	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2378	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2379	last_char=`echo $filename_input \| cut -c $last_char_int`
2380	if [[ "$last_char" == "f" ]]
2381	then
2382	skip_check=true
2383	reason="restart run."
2384	fi
2385
2386	if [[ $skip_check == false ]]
2387	then
2388	tmp_check=${working_directory}/tmp_check
2389
2390	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2391	# NOT NECESSARILY REQUIRED
2392	line=""
2393	found=false
2394	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2395	while read line1
2396	do
2397	line="$line1"
2398	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2399	then
2400	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2401	found=true
2402	fi
2403	done < $tmp_check
2404
2405	if [[ $found = false ]]
2406	then
2407	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2408	fi
2409
2410	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2411	# NOT NECESSARILY REQUIRED
2412	line=""
2413	found=false
2414	grep "NUDGING_DATA" $config_file > $tmp_check
2415	while read line1
2416	do
2417	line="$line1"
2418	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2419	then
2420	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2421	found=true
2422	fi
2423	done < $tmp_check
2424
2425	if [[ $found = false ]]
2426	then
2427	printf "\n +++ no NUDGING list entry found in the configuration file."
2428	fi
2429
2430	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2431	# NOT NECESSARILY REQUIRED
2432	line=""
2433	found=false
2434	grep "LSF_DATA" $config_file > $tmp_check
2435	while read line1
2436	do
2437	line="$line1"
2438	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2439	then
2440	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2441	found=true
2442	fi
2443	done < $tmp_check
2444
2445	if [[ $found = false ]]
2446	then
2447	printf "\n +++ no LSF list entry found in the configuration file."
2448	fi
2449
2450	rm -rf ${working_directory}/tmp_check
2451
2452	# CHECK IF THE P3DF FILE MUST BE CHECKED
2453	for item in $input_list
2454	do
2455	if [[ "$item" == "restart" ]]
2456	then
2457	check_restart=1
2458	else
2459	check_restart=0
2460	fi
2461	done
2462
2463	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2464	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2465	then
2466	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2467	locat=check_namelist; exit
2468	fi
2469
2470	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2471	if [[ $check_restart == 1 ]]
2472	then
2473
2474	filenamef="${filename_input}f"
2475	if [[ ! -f $filenamef ]]
2476	then
2477	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2478	check_restart=0
2479	answer=dummy
2480	printf "\n\n"
2481
2482	if [[ $silent == false ]]
2483	then
2484	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2485	do
2486	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2487	read answer
2488	done
2489	if [[ $answer = a \|\| $answer = A ]]
2490	then
2491	printf "\n +++ Aborting...."
2492	locat=normal; exit
2493	fi
2494	fi
2495	else
2496	check_restart=1
2497	fi
2498	fi
2499
2500	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2501	mkdir $check_sources
2502	cd $check_sources
2503
2504
2505	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2506	if [[ -d $add_source_path ]]
2507	then
2508	printf "\n\n *** copying files from $check_depository"
2509	cp $check_depository/check_namelist_files.tar ./
2510
2511	printf "\n\n *** untar of makefile and source files in $check_sources"
2512	tar -xf check_namelist_files.tar > /dev/null 2>&1
2513
2514	printf "\n\n *** adding user code."
2515	cp $add_source_path/* ./
2516	touch check_namelist_files.f90
2517
2518	# GET COMPILER OPTIONS AND PERFORM MAKE
2519	printf "\n\n *** compiling code if necessary...\n"
2520
2521	# workaround for batch jobs on local machine (lcxe6)
2522	if [[ $do_batch == true && $do_remote == false ]]
2523	then
2524	eval $init_cmds
2525	fi
2526
2527	# GET CHECK OPTIONS
2528	line=""
2529	found=false
2530
2531	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2532
2533	while read line1
2534	do
2535
2536	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2537	then
2538	line="$line1"
2539	fi
2540
2541	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2542	then
2543	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2544	line="$line "
2545	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2546	found=true
2547	fi
2548
2549	done < $tmp_check
2550	copts_check="$copts_check -D__check -D__parallel"
2551
2552	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2553
2554	# GET MAKE OUTPUT
2555	if [[ $? != 0 ]]
2556	then
2557	printf "\n +++ error during make."
2558	answer=dummy
2559	printf "\n\n"
2560	if [[ $silent == false ]]
2561	then
2562	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2563	do
2564	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2565	read answer
2566	done
2567	if [[ $answer = a \|\| $answer = A ]]
2568	then
2569	printf "\n +++ Aborting..."
2570	rm -rf $check_sources
2571	locat=normal; exit
2572	else
2573	skip_check=true
2574	fi
2575	else
2576	skip_check=true
2577	fi
2578	fi
2579	else
2580	cp $PALM_BIN/check_namelist_files.x ./
2581	fi
2582
2583	cp $filename_input ./PARIN
2584	if [[ $check_restart == 1 ]]
2585	then
2586	cp $filenamef ./PARINF
2587	fi
2588
2589	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2590	then
2591	printf "\n *** adding topography data"
2592	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2593
2594	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2595	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2596	# WHICH REQUIRE SUFFICIENT MEMORY
2597	ulimit -s unlimited
2598	fi
2599
2600	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2601	then
2602	printf "\n *** adding nudging data"
2603	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2604	fi
2605
2606	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2607	then
2608	printf "\n *** adding large scale forcing data"
2609	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2610	fi
2611
2612	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2613	cat > ENVPAR << %%END%%
2614	&envpar run_identifier = '$fname', host = '$host',
2615	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2616	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2617	maximum_cpu_time_allowed = ${cpumax}.,
2618	revision = '$global_revision',
2619	local_dvrserver_running = $local_dvrserver_running /
2620
2621	%%END%%
2622
2623	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2624	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2625	then
2626	printf "\n +++ WARNING: check_namelist_files.x not found."
2627	answer=dummy
2628	printf "\n\n"
2629
2630	if [[ $silent == false ]]
2631	then
2632	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2633	do
2634	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2635	read answer
2636	done
2637	if [[ $answer = a \|\| $answer = A ]]
2638	then
2639	printf "\n +++ Aborting..."
2640	rm -rf $check_sources
2641	locat=normal; exit
2642	else
2643	printf "\n *** skipping parameter file check."
2644	fi
2645	fi
2646
2647	elif [[ $skip_check == false ]]
2648	then
2649	# STARTING THE PARAMETER FILE CHECK
2650	printf "\n\n *** starting parameter file check..."
2651
2652	# CHECKING THE P3D FILE
2653	printf "\n\n (1) checking $filename_input"
2654	echo "$numprocs 0 0" > VARIN
2655	errors=`./check_namelist_files.x < VARIN 2>&1`
2656
2657	check_error=false
2658	if [[ "$errors" == "" ]]
2659	then
2660	printf " --> o.k."
2661	else
2662	printf " --> failed."
2663	check_error=true
2664	printf "\n\n $errors"
2665	fi
2666
2667	# CHECKING THE PD3F FILE IF NECESSARY
2668	if [[ $check_restart == 1 && $check_error == false ]]
2669	then
2670	printf "\n\n (2) checking $filenamef"
2671
2672	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2673	# IN &INIPAR LIST
2674	found=false
2675	cat PARINF \| while read line
2676	do
2677	line=$(echo $line\|sed 's/ //g')
2678	if [[ $line == "&inipar" ]]
2679	then
2680	start_search=true
2681	fi
2682
2683	if [[ $start_search == true ]]
2684	then
2685	if [[ $line == "initializing_actions='read_restart_data'" ]]
2686	then
2687	found=true
2688	break
2689	fi
2690	fi
2691
2692	if [[ $line == "/" ]]
2693	then
2694	start_search=false
2695	fi
2696
2697	done
2698
2699	if [[ $found = false ]]
2700	then
2701	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2702	printf "\n in &inipar list in $fname$p3df_suffix."
2703	rm -rf $check_sources
2704	locat=check_namelist; exit
2705	fi
2706
2707	# READ max_user_pr FROM FILES
2708	if [[ -f parin_for_check ]]
2709	then
2710	read max_pr_user < parin_for_check
2711	else
2712	max_user_pr=0
2713	fi
2714
2715	echo "$numprocs 1 $max_pr_user" > VARIN
2716	errors=`./check_namelist_files.x < VARIN 2>&1`
2717
2718	if [[ "$errors" == "" ]]
2719	then
2720	printf " --> o.k."
2721	else
2722	printf " --> failed."
2723	check_error=true
2724	printf "\n\n $errors"
2725	fi
2726	fi
2727
2728	# REPORT ERRORS AND CONTINUE/EXIT
2729	if [[ $check_error == true ]]
2730	then
2731	printf "\n +++ errors found in the parameter file!\n"
2732	answer=dummy
2733	printf "\n\n"
2734
2735	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2736	do
2737	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2738	read answer
2739	done
2740
2741	if [[ $answer = a \|\| $answer = A ]]
2742	then
2743	printf "\n +++ Aborting..."
2744	rm -rf $check_sources
2745	locat=normal; exit
2746	fi
2747	else
2748	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2749	fi
2750	rm -rf $check_sources
2751	fi
2752	else
2753	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2754	fi
2755
2756	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2757	rm -rf $check_sources
2758	cd $working_directory
2759
2760
2761	# DETERMINE PATH FOR MAKE DEPOSITORY
2762	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2763	then
2764
2765	line=""
2766	grep "%depository_path" $config_file > tmp_mrun
2767	while read line
2768	do
2769	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2770	then
2771	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2772	then
2773	global_depository_path=`echo $line \| cut -d" " -s -f2`
2774	fi
2775	fi
2776	done < tmp_mrun
2777
2778	line=""
2779	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2780	while read line
2781	do
2782	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2783	then
2784	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2785	then
2786	local_depository_path=`echo $line \| cut -d" " -s -f2`
2787	fi
2788	fi
2789	done < tmp_mrun
2790
2791	if [[ "$local_depository_path" = "" ]]
2792	then
2793	if [[ "$global_depository_path" != "" ]]
2794	then
2795	local_depository_path=$global_depository_path
2796	else
2797	printf "\n\n +++ no depository path found in configuration file"
2798	printf "\n for local host \"$localhost\" "
2799	printf "\n please set \"\%depository_path\" in configuration file\n"
2800	locat=config_file; exit
2801	fi
2802	fi
2803	eval local_depository_path=$local_depository_path
2804	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2805	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2806
2807
2808	basename=`echo $mainprog \| cut -f1 -d"."`
2809	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2810	if [[ ! -f $make_depository ]]
2811	then
2812	printf "\n"
2813	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2814	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2815	fi
2816
2817	fi
2818
2819
2820	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2821	# CHENDE AKTIONEN DURCHGEFUEHRT
2822	if [[ $do_batch = false ]]
2823	then
2824
2825
2826	# TEMPORAEREN KATALOG ERZEUGEN
2827	mkdir -p $TEMPDIR
2828	chmod go+rx $TEMPDIR
2829	tmpcreate=true
2830
2831
2832	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2833	# TEMPORAERES VERZEICHNIS KOPIEREN
2834	if [[ $do_compile = true ]]
2835	then
2836
2837	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2838	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2839	if [[ $localhost = nech ]]
2840	then
2841	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2842	if mkdir -p $TEMPDIR_COMPILE
2843	then
2844	printf "\n *** \"$TEMPDIR_COMPILE\" "
2845	printf "\n is generated as temporary directory for cross compiling\n"
2846	else
2847	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2848	printf "\n needed for cross compilation failed"
2849	locat=compile
2850	exit
2851	fi
2852	else
2853	TEMPDIR_COMPILE=$TEMPDIR
2854	fi
2855
2856	cp $make_depository $TEMPDIR_COMPILE
2857	cd $TEMPDIR_COMPILE
2858	tar -xf $make_depository > /dev/null 2>&1
2859	cd - > /dev/null
2860
2861	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2862	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2863	if [[ $(echo $host \| cut -c1-6) = lccray ]]
2864	then
2865	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2866	else
2867	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2868	fi
2869
2870	else
2871
2872	cp $executable ${TEMPDIR}/a.out
2873
2874	fi
2875
2876
2877	# WECHSEL IN TEMPORAEREN KATALOG
2878	cd $TEMPDIR
2879	printf "\n *** changed to temporary directory: $TEMPDIR"
2880
2881
2882	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2883	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2884	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2885	# ERMITTELN
2886	(( i = 0 ))
2887	while (( i < iout ))
2888	do
2889	(( i = i + 1 ))
2890	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2891	then
2892	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2893	else
2894	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2895	fi
2896	done
2897
2898
2899	# IF REQUIRED, START WITH COMPILING ACTIONS
2900	if [[ $do_compile = true ]]
2901	then
2902
2903
2904	if [[ -f a.out ]]
2905	then
2906
2907	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2908	printf "\n\n\n *** executable a.out found"
2909	printf "\n no compilation required \n"
2910
2911	else
2912
2913	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2914	printf "\n\n\n *** compilation starts \n$striche\n"
2915	printf " *** compilation with make using following options:\n"
2916	printf " make depository: $make_depository"
2917	if [[ "$mopts" != "" ]]
2918	then
2919	printf " make options: $mopts\n"
2920	fi
2921	printf " compilername: $compiler_name\n"
2922	printf " compiler options: $fopts\n"
2923	printf " preprocessor directives: $cpp_options \n"
2924	printf " linker options: $lopts \n"
2925	if [[ "$modules" != "" ]]
2926	then
2927	printf " modules to be load: $modules \n"
2928	fi
2929	printf " source code files: $source_list \n"
2930
2931	if [[ $localhost = nech ]]
2932	then
2933	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2934	cp $TEMPDIR_COMPILE/a.out .
2935	[[ $? != 0 ]] && compile_error=true
2936	rm -rf $TEMPDIR_COMPILE
2937	elif [[ $localhost = ibmh ]]
2938	then
2939	printf " compiler is called via ssh on \"plogin1\" \n"
2940	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2941	[[ ! -f a.out ]] && compile_error=true
2942	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2943	elif [[ $localhost = lcsgib ]]
2944	then
2945	printf " compiler is called via ssh on \"bicegate0\" \n"
2946	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2947	[[ ! -f a.out ]] && compile_error=true
2948	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2949	elif [[ $localhost = lcsgih ]]
2950	then
2951	printf " compiler is called via ssh on \"hicegate0\" \n"
2952	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2953	[[ ! -f a.out ]] && compile_error=true
2954	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2955	elif [[ $localhost = lcflow ]]
2956	then
2957	printf " compiler is called via ssh on \"flow\" \n"
2958	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2959	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
2960	[[ "$check_for_file" = "" ]] && compile_error=true
2961	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2962	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf \|\| $localhost = lccrayh ]]
2963	then
2964	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2965	else
2966	[[ "$init_cmds" != "" ]] && eval $init_cmds
2967	[[ "$module_calls" != "" ]] && eval $module_calls
2968	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2969	fi
2970
2971	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2972	then
2973	printf "\n +++ error occured while compiling or linking"
2974	locat=compile
2975
2976	exit
2977	else
2978	printf "$striche\n *** compilation finished \n"
2979	fi
2980
2981	fi
2982
2983	fi
2984
2985
2986	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2987	if [[ $local_compile = true ]]
2988	then
2989	cd $HOME
2990	rm -rf $TEMPDIR
2991	locat=local_compile; exit
2992	fi
2993
2994
2995	# BEREITSTELLEN DER INPUT-DATEIEN
2996	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2997	(( i = 0 ))
2998	while (( i < iin ))
2999	do
3000	(( i = i + 1 ))
3001	if (( i == 1 ))
3002	then
3003	printf "\n\n *** providing INPUT-files:\n$striche"
3004	fi
3005
3006
3007	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
3008	if [[ "${transin[$i]}" = unavailable ]]
3009	then
3010	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
3011	then
3012	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3013	printf "\n is not available!"
3014	else
3015	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3016	printf "\n is not available!"
3017	fi
3018	continue
3019	fi
3020
3021	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3022	files_for_pes=false; datentyp=file
3023	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3024	then
3025	files_for_pes=true; datentyp=directory
3026	actionin[$i]=""
3027	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3028	then
3029	actionin[$i]=""
3030	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3031	then
3032	files_for_pes=true; datentyp=directory
3033	actionin[$i]="ar"
3034	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3035	then
3036	actionin[$i]="ar"
3037	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3038	then
3039	files_for_pes=true; datentyp=directory
3040	actionin[$i]="fl"
3041	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3042	then
3043	actionin[$i]="fl"
3044	fi
3045
3046	if [[ $files_for_pes = true ]]
3047	then
3048	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3049	else
3050	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3051	fi
3052
3053	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3054	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3055	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3056	# SERVER ZU HOLEN
3057	if [[ "${actionin[$i]}" = fl ]]
3058	then
3059	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3060	if [[ $files_for_pes = false ]]
3061	then
3062	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3063	then
3064	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3065	got_tmp[$i]=true
3066	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3067	then
3068	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3069	printf "\n *** trying to use backup copy in \"$WORK\" "
3070	cp $WORK/${frelin[$i]} ${localin[$i]}
3071	else
3072	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3073	printf "\n or \"$tmp_data_catalog\" does not exist!"
3074	printf "\n *** trying to get copy from archive"
3075	actionin[$i]=ar
3076	fi
3077	else
3078	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3079	then
3080	mkdir ${localin[$i]}
3081	cd $tmp_data_catalog/${frelin[$i]}
3082	for file in $(ls *)
3083	do
3084	ln $file $TEMPDIR/${localin[$i]}
3085	done
3086	cd $TEMPDIR
3087	got_tmp[$i]=true
3088	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3089	then
3090	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3091	printf "\n *** trying to use backup copy in \"$WORK\" "
3092	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3093	else
3094	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3095	printf "\n or \"$tmp_data_catalog\" does not exist!"
3096	printf "\n *** trying to get copy from archive"
3097	actionin[$i]=ar
3098	fi
3099	fi
3100	fi
3101
3102
3103	# DATEI LIEGT AUF ARCHIV-SERVER
3104	if [[ "${actionin[$i]}" = ar ]]
3105	then
3106
3107	if [[ $files_for_pes = false ]]
3108	then
3109	printf "\n file will be restored from archive-system ($archive_system)!"
3110	else
3111	printf "\n directory will be restored from archive-system ($archive_system)!"
3112	fi
3113
3114	file_restored=false
3115
3116	if [[ $archive_system = asterix ]]
3117	then
3118	do_stagein=true
3119	(( stagein_anz = 0 ))
3120	while [[ $do_stagein = true ]]
3121	do
3122	if [[ $files_for_pes = false ]]
3123	then
3124	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3125	else
3126	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3127	fi
3128	cat STAGEIN_OUTPUT
3129	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3130	then
3131	file_restored=true
3132	do_stagein=false
3133	else
3134	(( stagein_anz = stagein_anz + 1 ))
3135	if (( stagein_anz == 10 ))
3136	then
3137	printf "\n +++ stagein stoped after 10 tries"
3138	locat=stage
3139	exit
3140	fi
3141	printf "\n +++ restoring from archive failed, trying again:"
3142	sleep 900
3143	fi
3144	done
3145	elif [[ $archive_system = DMF ]]
3146	then
3147	if [[ $files_for_pes = false ]]
3148	then
3149	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3150	locat=DMF
3151	exit
3152	else
3153	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3154	cp -r $ARCHIVE/${frelin[$i]} $PWD
3155	file_restored=true
3156	fi
3157	elif [[ $archive_system = tivoli ]]
3158	then
3159	if [[ $files_for_pes = false ]]
3160	then
3161	if [[ $localhost = lcsgih ]]
3162	then
3163	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3164	else
3165	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3166	fi
3167	else
3168	(( inode = 0 ))
3169	while (( inode < nodes ))
3170	do
3171	if [[ $localhost = lcsgih ]]
3172	then
3173	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3174	else
3175	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3176	fi
3177	(( inode = inode + 1 ))
3178	done
3179	fi
3180	file_restored=true
3181	elif [[ $archive_system = ut ]]
3182	then
3183	if [[ $files_for_pes = false ]]
3184	then
3185	cp $UT/${frelin[$i]} .
3186	else
3187	(( inode = 0 ))
3188	while (( inode < nodes ))
3189	do
3190	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3191	(( inode = inode + 1 ))
3192	done
3193	fi
3194	file_restored=true
3195	else
3196	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3197	locat=rearchive
3198	exit
3199	fi
3200
3201	if [[ $file_restored = true ]]
3202	then
3203
3204	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3205	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3206	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3207	if [[ $files_for_pes = false ]]
3208	then
3209	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3210	else
3211	mkdir $tmp_data_catalog/${frelin[$i]}
3212	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3213	fi
3214	got_tmp[$i]=true
3215
3216	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3217	mv ${frelin[$i]} ${localin[$i]}
3218
3219	fi
3220	fi
3221
3222
3223	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3224	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3225	then
3226
3227	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3228	then
3229
3230	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3231	printf "\n file will be provided for $numprocs processors"
3232	mkdir ${localin[$i]}
3233	ival=$numprocs
3234	(( ii = 0 ))
3235	while (( ii <= ival-1 ))
3236	do
3237	if (( ii < 10 ))
3238	then
3239	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3240	elif (( ii < 100 ))
3241	then
3242	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3243	elif (( ii < 1000 ))
3244	then
3245	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3246	else
3247	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3248	fi
3249	(( ii = ii + 1 ))
3250	done
3251
3252	else
3253
3254	if [[ $files_for_pes = true ]]
3255	then
3256
3257	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3258	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3259	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3260	# PER MOVE UMBENANNT WERDEN
3261	printf "\n providing $numprocs files for the respective processors"
3262	mkdir ${localin[$i]}
3263	if [[ $link_local_input = true ]]
3264	then
3265	printf " using ln -f\n"
3266	cd ${absnamein[$i]}
3267	for file in $(ls *)
3268	do
3269	ln -f $file ${localin[$i]}
3270	done
3271	cd $TEMPDIR
3272	fi
3273	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3274	if [[ ! -f "${localin[$i]}/_0000" ]]
3275	then
3276	if [[ $link_local_input = true ]]
3277	then
3278	printf " ln failed for .../_0000, using cp...\n"
3279	fi
3280	cp -r ${absnamein[$i]}/* ${localin[$i]}
3281	fi
3282
3283	else
3284	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3285	if [[ $link_local_input = true ]]
3286	then
3287	printf " using ln -f\n"
3288	ln -f ${absnamein[$i]} ${localin[$i]}
3289	fi
3290	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3291	if [[ ! -f "${localin[$i]}" ]]
3292	then
3293	if [[ $link_local_input = true ]]
3294	then
3295	printf " ln failed, using cp...\n"
3296	fi
3297	cp ${absnamein[$i]} ${localin[$i]}
3298	fi
3299	fi
3300	fi
3301	fi
3302
3303	done
3304	if (( i != 0 ))
3305	then
3306	printf "\n$striche\n *** all INPUT-files provided \n"
3307	fi
3308
3309
3310	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3311	(( i = 0 ))
3312	while (( i < iic ))
3313	do
3314	(( i = i + 1 ))
3315	if (( i == 1 ))
3316	then
3317	printf "\n\n *** execution of INPUT-commands:\n$striche"
3318	fi
3319	printf "\n >>> ${in_command[$i]}"
3320	eval ${in_command[$i]}
3321	if (( i == iic ))
3322	then
3323	printf "\n$striche\n"
3324	fi
3325	done
3326
3327
3328	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3329	cpurest=${cpumax}.
3330
3331
3332	# START DVR STREAMING SERVER
3333	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3334	then
3335	if [[ "$dvr_server" != "" ]]
3336	then
3337
3338	printf "\n\n *** preparing the dvr streaming server configuration file"
3339
3340	# Check, if a dvr server is already running
3341	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3342	if [[ "$running_dvrserver_id" != "" ]]
3343	then
3344
3345	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3346	printf "\n This server is used instead starting a new one!"
3347	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3348
3349	else
3350
3351	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3352	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3353	then
3354	cp ${PALM_BIN}/.dvrserver.config .
3355
3356	# Entering the BASEDIR, UID and GID into this file
3357	user_id=`id -u`
3358	group_id=`id -g`
3359	# & is needed as seperator, because TEMPDIR contains /
3360	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3361	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3362	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3363	mv .dvrserver.3 .dvrserver.config
3364	rm .dvrserver.1 .dvrserver.2
3365
3366	# Start dvr server in background, get his id and print on terminal
3367	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3368	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3369	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3370	local_dvrserver_running=.TRUE.
3371	else
3372	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3373	printf "\n \"$PALM_BIN\" "
3374	locat=dvr
3375	exit
3376	fi
3377
3378	fi
3379
3380	else
3381	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3382	fi
3383	fi
3384
3385
3386	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3387	# LESEN VON PALM)
3388	cat > ENVPAR << %%END%%
3389	&envpar run_identifier = '$fname', host = '$localhost',
3390	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3391	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3392	maximum_cpu_time_allowed = ${cpumax}.,
3393	revision = '$global_revision',
3394	local_dvrserver_running = $local_dvrserver_running /
3395
3396	%%END%%
3397
3398
3399	# PROGRAMMSTART
3400	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3401	PATH=$PATH:$TEMPDIR
3402
3403	# MPI debug option (argument checking, slows down execution due to increased latency)
3404	if [[ "$mpi_debug" = true ]]
3405	then
3406	export MPI_CHECK_ARGS=1
3407	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3408	fi
3409
3410	if [[ "$totalview" = true ]]
3411	then
3412	printf "\n *** totalview debugger will be used"
3413	tv_opt="-tv"
3414	else
3415	tv_opt=""
3416	fi
3417
3418	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3419	then
3420	if [[ "$ENVIRONMENT" = BATCH ]]
3421	then
3422	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3423	then
3424	printf "\n +++ debug is allowed in interactive mode only"
3425	locat=debug
3426	exit
3427	fi
3428	fi
3429	if [[ $localhost = ibmh ]]
3430	then
3431
3432	# SETUP THE IBM MPI ENVIRONMENT
3433	export MP_SHARED_MEMORY=yes
3434	export AIXTHREADS_SCOPE=S
3435	export OMP_NUM_THREADS=$threads_per_task
3436	export AUTHSTATE=files
3437	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3438
3439	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3440	export MP_ADAPTER_USE=shared
3441	export MP_CPU_USE=multiple
3442	export MP_TIMEOUT=1200
3443
3444	unset MP_TASK_AFFINITY
3445
3446	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3447	#(( ii = 1 ))
3448	#while (( ii <= $numprocs ))
3449	#do
3450	# echo $localhost_realname >> hostfile
3451	# (( ii = ii + 1 ))
3452	#done
3453	#export MP_HOSTFILE=hostfile
3454
3455	if [[ "$LOADLBATCH" = yes ]]
3456	then
3457	totalview poe a.out $ROPTS
3458	else
3459	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3460	export TVDSVRLAUNCHCMD=ssh
3461	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3462	fi
3463	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3464	then
3465	# CURRENTLY NO DEBUGGER ON LCSGI
3466	if [[ $run_coupled_model = true ]]
3467	then
3468	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3469	locat=debug
3470	exit
3471	else
3472	echo "no_coupling" > runfile_atmos
3473	fi
3474	(( ii = $numprocs / $threads_per_task ))
3475	export OMP_NUM_THREADS=$threads_per_task
3476	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3477	if [[ $threads_per_task != 1 ]]
3478	then
3479	printf "\n threads per task: $threads_per_task"
3480	fi
3481	printf "\n\n"
3482	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3483	then
3484	# export MPI_LAUNCH_TIMEOUT=360
3485	if [[ "$totalview" = true ]]
3486	then
3487	printf "\n running totalview debugger"
3488	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3489	else
3490	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3491	fi
3492	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3493	then
3494	# ulimit -s 300000 # A too large stack size causes problems
3495	# export MV2_NUM_PORTS=2
3496	# export MV2_CPU_MAPPING=0:1:2:3
3497	if [[ "$totalview" = true ]]
3498	then
3499	printf "\n running totalview debugger"
3500	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3501	else
3502	mpiexec ./a.out $ROPTS < runfile_atmos
3503	fi
3504	fi
3505	else
3506	printf "\n +++ no debug available on \"$localhost\" "
3507	printf "\n or not implemented in mrun so far"
3508	locat=debug
3509	exit
3510	fi
3511
3512	# end debug mode
3513	else
3514
3515	# normal execution
3516	if [[ -n $numprocs ]]
3517	then
3518	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3519	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3520	then
3521	# SETUP THE IBM MPI ENVIRONMENT
3522	if [[ $host != ibmh && $host != ibmkisti ]]
3523	then
3524	export MP_SHARED_MEMORY=yes
3525	export AIXTHREAD_SCOPE=S
3526	export OMP_NUM_THREADS=$threads_per_task
3527	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3528	export AUTHSTATE=files
3529	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3530	# export MP_PRINTENV=yes
3531
3532	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3533	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3534	export MP_WAIT_MODE=poll
3535	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3536	fi
3537
3538	if [[ $host = ibmkisti ]]
3539	then
3540	export LANG=en_US
3541	export MP_SHARED_MEMORY=yes
3542	if [[ $threads_per_task = 1 ]]
3543	then
3544	export MP_SINGLE_THREAD=yes
3545	export MEMORY_AFFINITY=MCM
3546	else
3547	export OMP_NUM_THREADS=$threads_per_task
3548	fi
3549	fi
3550
3551	if [[ "$LOADLBATCH" = yes ]]
3552	then
3553	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3554	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3555	then
3556	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3557	else
3558	if [[ $run_coupled_model = false ]]
3559	then
3560	if [[ "$ocean_file_appendix" = true ]]
3561	then
3562	echo "precursor_ocean" > runfile_atmos
3563	else
3564	echo "precursor_atmos" > runfile_atmos
3565	fi
3566	else
3567	(( iia = $numprocs_atmos / $threads_per_task ))
3568	(( iio = $numprocs_ocean / $threads_per_task ))
3569	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3570	printf "\n using $coupled_mode coupling"
3571	printf "\n\n"
3572	echo "coupled_run $iia $iio" > runfile_atmos
3573	fi
3574	poe ./a.out $ROPTS < runfile_atmos
3575	fi
3576	else
3577	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3578	then
3579	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3580	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3581	then
3582	if [[ -f $hostfile ]]
3583	then
3584	cp $hostfile hostfile
3585	else
3586	(( ii = 1 ))
3587	while (( ii <= $numprocs ))
3588	do
3589	echo $localhost_realname >> hostfile
3590	(( ii = ii + 1 ))
3591	done
3592	fi
3593	export MP_HOSTFILE=hostfile
3594	if [[ $run_coupled_model = false ]]
3595	then
3596	if [[ "$ocean_file_appendix" = true ]]
3597	then
3598	echo "precursor_ocean" > runfile_atmos
3599	else
3600	echo "precursor_atmos" > runfile_atmos
3601	fi
3602	else
3603	(( iia = $numprocs_atmos / $threads_per_task ))
3604	(( iio = $numprocs_ocean / $threads_per_task ))
3605	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3606	printf "\n using $coupled_mode coupling"
3607	printf "\n\n"
3608	echo "coupled_run $iia $iio" > runfile_atmos
3609	fi
3610	if [[ $localhost = ibmy ]]
3611	then
3612	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3613	else
3614	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3615	fi
3616
3617	else
3618	if [[ "$host_file" = "" ]]
3619	then
3620	printf "\n +++ no hostfile given in configuration file"
3621	locat=config_file
3622	exit
3623	else
3624	eval host_file=$host_file
3625	fi
3626	export MP_HOSTFILE=$host_file
3627	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3628	fi
3629	fi
3630	elif [[ $host = nech \|\| $host = necriam ]]
3631	then
3632	(( ii = nodes ))
3633	if [[ $ii = 1 ]]
3634	then
3635	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3636	export MPIPROGINF=YES
3637	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3638	echo "*** execution on single node with mpirun"
3639	mpirun -np $numprocs ./a.out $ROPTS
3640	else
3641	(( i = 0 ))
3642	while (( i < ii ))
3643	do
3644	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3645	(( i = i + 1 ))
3646	done
3647
3648	echo "#!/bin/sh" > mpi_exec_shell
3649	echo " " >> mpi_exec_shell
3650	echo "set -u" >> mpi_exec_shell
3651	echo "F_ERRCNT=0" >> mpi_exec_shell
3652	echo "MPIPROGINV=YES" >> mpi_exec_shell
3653	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3654	echo "cpurest=$cpurest" >> mpi_exec_shell
3655	echo "fname=$fname" >> mpi_exec_shell
3656	echo "localhost=$localhost" >> mpi_exec_shell
3657	echo "return_addres=$return_addres" >> mpi_exec_shell
3658	echo "return_username=$return_username" >> mpi_exec_shell
3659	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3660	echo "write_binary=$write_binary" >> mpi_exec_shell
3661	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3662	echo " " >> mpi_exec_shell
3663	echo "export F_ERRCNT" >> mpi_exec_shell
3664	echo "export MPIPROGINV" >> mpi_exec_shell
3665	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3666	echo "export cpurest" >> mpi_exec_shell
3667	echo "export fname" >> mpi_exec_shell
3668	echo "export localhost" >> mpi_exec_shell
3669	echo "export return_addres" >> mpi_exec_shell
3670	echo "export return_username" >> mpi_exec_shell
3671	echo "export tasks_per_node" >> mpi_exec_shell
3672	echo "export write_binary" >> mpi_exec_shell
3673	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3674	echo " " >> mpi_exec_shell
3675	echo "exec ./a.out" >> mpi_exec_shell
3676
3677	chmod u+x mpi_exec_shell
3678	export MPIPROGINF=YES
3679	mpirun -f multinode_config &
3680	wait
3681
3682	fi
3683	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3684	then
3685
3686	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3687	# DOES NOT EXIST
3688	if [[ $host != lccrayb &&$host != lccrayf && $host != lccrayh && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3689	then
3690	if [[ -f $hostfile ]]
3691	then
3692	cp $hostfile hostfile
3693	(( ii = $numprocs / $threads_per_task ))
3694	else
3695	(( ii = 1 ))
3696	while (( ii <= $numprocs / $threads_per_task ))
3697	do
3698	echo $localhost_realname >> hostfile
3699	(( ii = ii + 1 ))
3700	done
3701	fi
3702	eval zeile=\"`head -n $ii hostfile`\"
3703	printf "\n *** running on: $zeile"
3704	fi
3705
3706	(( ii = $numprocs / $threads_per_task ))
3707	export OMP_NUM_THREADS=$threads_per_task
3708	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3709	if [[ $threads_per_task != 1 ]]
3710	then
3711	# increase stack size to unlimited, because large runs
3712	# may abort otherwise
3713	ulimit -Ss unlimited
3714	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3715	fi
3716	if [[ $run_coupled_model = false ]]
3717	then
3718	if [[ "$ocean_file_appendix" = true ]]
3719	then
3720	echo "precursor_ocean" > runfile_atmos
3721	else
3722	echo "precursor_atmos" > runfile_atmos
3723	fi
3724	printf "\n\n"
3725	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3726	then
3727	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3728	then
3729	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3730	# export MPI_DSM_DISTRIBUTE=1
3731	# MPI_DSM_CPULIST: pin MPI processes to cores
3732	if [[ $use_openmp = false ]]
3733	then
3734	if [[ "$sgi_feature" = ice2 ]]
3735	then
3736	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3737	else
3738	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3739	fi
3740	else
3741	unset MPI_DSM_CPULIST
3742	fi
3743	# MPI_IB_RAILS: use both IB rails on ICE2
3744	export MPI_BUFS_PER_HOST=512
3745	export MPI_IB_RAILS=2
3746	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3747	export MPI_CONNECTIONS_THRESHOLD=8192
3748	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3749	export MPI_TYPE_DEPTH=20
3750	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3751	export MPI_GROUP_MAX=64
3752	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3753	if [[ $use_openmp = true ]]
3754	then
3755	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3756	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3757	else
3758	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3759	fi
3760
3761	# next is test for openmp usage
3762	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3763	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3764	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3765	then
3766	export MV2_NUM_PORTS=2
3767	# The default setting of MV2_CPU_MAPPING gives best results
3768	# export MV2_ENABLE_AFFINITY=1
3769	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3770	# if [[ "$sgi_feature" = ice2 ]]
3771	# then
3772	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3773	# else
3774	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3775	# fi
3776	if [[ $use_openmp = true ]]
3777	then
3778	unset MV2_CPU_MAPPING
3779	export MV2_ENABLE_AFFINITY=0
3780	fi
3781	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3782	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3783	if [[ $use_openmp = true ]]
3784	then
3785	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3786	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3787	else
3788	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3789	fi
3790	elif [[ "$mpilib" = impi ]]
3791	then
3792	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3793	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3794	fi
3795	elif [[ $host = lccrayb \|\| $host = lccrayh ]]
3796	then
3797	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3798	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3799	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3800	elif [[ $host = lccrayf ]]
3801	then
3802	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3803	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3804	then
3805	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3806	elif [[ $host = lcflow ]]
3807	then
3808	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3809	elif [[ $host = lcsb ]]
3810	then
3811	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3812	elif [[ $host = lckiaps ]]
3813	then
3814	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3815	elif [[ $host = lckyu* ]]
3816	then
3817	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3818	else
3819	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3820	fi
3821	else
3822
3823	# currently there is no full MPI-2 support on ICE and XT4
3824	(( iia = $numprocs_atmos / $threads_per_task ))
3825	(( iio = $numprocs_ocean / $threads_per_task ))
3826	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3827	printf "\n using $coupled_mode coupling"
3828	printf "\n\n"
3829
3830	if [[ $coupled_mode = "mpi2" ]]
3831	then
3832	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3833	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3834	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3835	then
3836
3837	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3838	then
3839	# export MPI_LAUNCH_TIMEOUT=360
3840	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3841	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3842	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3843	then
3844	# ulimit -s 300000 # A too large stack size causes problems
3845	# export MV2_NUM_PORTS=2
3846	# export MV2_CPU_MAPPING=0:1:2:3
3847	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3848	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3849	fi
3850
3851	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3852	then
3853
3854	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3855	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3856
3857	else
3858	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3859	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3860	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3861	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3862	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3863	fi
3864	wait
3865
3866	else
3867
3868	echo "coupled_run $iia $iio" > runfile_atmos
3869	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3870	then
3871
3872	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3873	then
3874	# export MPI_LAUNCH_TIMEOUT=360
3875	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3876	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3877	then
3878	# ulimit -s 300000 # A too large stack size causes problems
3879	# export MV2_NUM_PORTS=2
3880	# export MV2_CPU_MAPPING=0:1:2:3
3881	mpiexec ./a.out $ROPTS < runfile_atmos
3882	fi
3883
3884	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3885	then
3886
3887	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3888
3889	elif [[ $host = lck \|\| $host = lckordi ]]
3890	then
3891
3892	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3893
3894	elif [[ $host = lckyu* ]]
3895	then
3896
3897	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3898
3899	fi
3900	wait
3901	fi
3902
3903	fi
3904	elif [[ $host = lckyoto ]]
3905	then
3906	set -xv
3907	export P4_RSHCOMMAND=plesh
3908	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3909	if [[ "$ENVIRONMENT" = BATCH ]]
3910	then
3911	if [[ "$cond2" = fujitsu ]]
3912	then
3913	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3914	elif [[ "cond2" = pgi ]]
3915	then
3916	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3917	else
3918	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3919	fi
3920	else
3921	if [[ "$cond2" = "" ]]
3922	then
3923	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3924	else
3925	mpirun -np $numprocs ./a.out $ROPTS
3926	fi
3927	fi
3928	set +xv
3929	elif [[ $host = lctit ]]
3930	then
3931	export OMP_NUM_THREADS=$threads_per_task
3932	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3933	if [[ "$threads_per_task" != 1 ]]
3934	then
3935	export MV2_ENABLE_AFFINITY=0
3936	fi
3937	echo "----- PBS_NODEFILE content:"
3938	cat $PBS_NODEFILE
3939	echo "-----"
3940	(( ii = $numprocs / $threads_per_task ))
3941	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3942	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3943	else
3944	mpprun -n $numprocs a.out $ROPTS
3945	fi
3946	[[ $? != 0 ]] && execution_error=true
3947
3948
3949	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3950	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3951	then
3952	apprentice
3953	fi
3954	else
3955	a.out $ROPTS
3956	fi
3957	fi
3958	if [[ $? != 0 \|\| $execution_error = true ]]
3959	then
3960
3961	# ABBRUCH BEI LAUFZEITFEHLER
3962	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3963	printf "\n +++ runtime error occured"
3964	locat=execution
3965	exit
3966	else
3967	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3968	printf "\n$striche\n *** execution finished \n"
3969
3970	# Stop the dvr streaming server and process the dvr output in order
3971	# to create dvrs- and html-files containing all streams
3972	if [[ "$dvrserver_id" != "" ]]
3973	then
3974	kill $dvrserver_id
3975	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3976
3977	# If there is a directory, data have been output by the
3978	# streaming server. Otherwise, user has chosen dvrp_output=local
3979	if [[ -d DATA_DVR ]]
3980	then
3981
3982	# Add the current dvr configuration file to the dvr output
3983	# directory
3984	cp .dvrserver.config DATA_DVR
3985
3986	# Process the dvr output (option -s for also generating
3987	# sequence mode data)
3988	process_dvr_output -d DATA_DVR -f $fname -s
3989
3990	else
3991
3992	# Process the local output
3993	process_dvr_output -l -d DATA_DVR -f $fname
3994
3995	fi
3996
3997	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3998	then
3999
4000	# Process dvr output generated in local mode (dvrp_output=local)
4001	process_dvr_output -l -d DATA_DVR -f $fname
4002
4003	fi
4004	fi
4005
4006
4007
4008	# Call of combine_plot_fields in order to merge single files written
4009	# by each PE into one file.
4010	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
4011	then
4012	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
4013	printf "\n 2d- and/or 3d-data may be incomplete!"
4014	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
4015	elif [[ "$combine_plot_fields" == true ]]
4016	then
4017	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
4018	then
4019	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
4020	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
4021	else
4022	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
4023	combine_plot_fields${block}.x
4024	fi
4025	else
4026	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4027	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4028	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4029	fi
4030
4031
4032
4033	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4034	(( i = 0 ))
4035	while (( i < ioc ))
4036	do
4037	(( i = i + 1 ))
4038	if (( i == 1 ))
4039	then
4040	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4041	fi
4042	printf "\n >>> ${out_command[$i]}"
4043	eval ${out_command[$i]}
4044	if (( i == ioc ))
4045	then
4046	printf "\n$striche\n"
4047	fi
4048	done
4049
4050
4051	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4052	if [[ $do_trace = true ]]
4053	then
4054	printf "\n\n"
4055	ls -al
4056	fi
4057
4058
4059
4060	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4061	(( i = 0 ))
4062	while (( i < iout ))
4063	do
4064	(( i = i + 1 ))
4065	if (( i == 1 ))
4066	then
4067	printf "\n\n *** saving OUTPUT-files:\n$striche"
4068	fi
4069
4070	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4071	files_for_pes=false; filetyp=file
4072	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4073	then
4074	files_for_pes=true; filetyp=directory
4075	actionout[$i]=""
4076	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4077	then
4078	actionout[$i]=""
4079	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4080	then
4081	files_for_pes=true; filetyp=directory
4082	actionout[$i]="ar"
4083	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4084	then
4085	actionout[$i]="ar"
4086	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4087	then
4088	files_for_pes=true; filetyp=directory
4089	actionout[$i]="fl"
4090	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4091	then
4092	actionout[$i]="fl"
4093	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4094	then
4095	files_for_pes=true; filetyp=directory
4096	actionout[$i]="tr"
4097	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4098	then
4099	actionout[$i]="tr"
4100	fi
4101
4102	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4103	then
4104	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4105	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4106	then
4107	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4108	else
4109
4110
4111	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4112	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4113	# REMOTE-RECHNUNGEN
4114	if [[ "${actionout[$i]}" = tr ]]
4115	then
4116	if [[ $localhost != $fromhost ]]
4117	then
4118	if [[ $files_for_pes = false ]]
4119	then
4120	cps=""
4121	cst=""
4122	else
4123	cps=-c
4124	cst="/"
4125	fi
4126	if [[ $localhost = nech ]]
4127	then
4128
4129	# TRANSFER IN EIGENSTAENDIGEM JOB
4130	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4131	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4132	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4133	if [[ $files_for_pes = false ]]
4134	then
4135	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4136	else
4137	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4138	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4139	fi
4140
4141	echo "set -x" > transfer_${localout[$i]}
4142	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4143
4144	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4145	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4146	printf "\n or higher cycle\n"
4147	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4148
4149	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4150
4151	if [[ $localhost = nech ]]
4152	then
4153	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4154	else
4155	if [[ "$LOGNAME" = b323013 ]]
4156	then
4157	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4158	else
4159	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4160	fi
4161	fi
4162
4163	else
4164
4165	# TRANSFER INNERHALB DIESES JOBS
4166	transfer_failed=false
4167	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4168	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4169	if [[ $localhost = lccrayb ]]
4170	then
4171	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4172	elif [[ $localhost = lccrayh ]]
4173	then
4174	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4175	else
4176	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4177	fi
4178	[[ $? != 0 ]] && transfer_failed=true
4179
4180	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4181	# LOKALER MASCHINE ANLEGEN
4182	if [[ $transfer_failed = true ]]
4183	then
4184	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4185	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4186
4187	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4188	# ANLEGEN.
4189	eval local_catalog=${pathout[$i]}
4190	if [[ ! -d $local_catalog ]]
4191	then
4192	printf " *** local directory does not exist. Trying to create:\n"
4193	printf " $local_catalog \n"
4194	mkdir -p $local_catalog
4195	fi
4196	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4197	transfer_problems=true
4198	fi
4199	fi
4200	else
4201
4202	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4203	actionout[$i]=""
4204	fi
4205	fi
4206
4207
4208	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4209	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4210	# REMOTE-RECHNUNGEN
4211	if [[ "${actionout[$i]}" = tra ]]
4212	then
4213	if [[ $localhost != $fromhost ]]
4214	then
4215	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4216	then
4217
4218	# TRANSFER IN EIGENSTAENDIGEM JOB
4219	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4220	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4221	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4222	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4223
4224	echo "set -x" > transfer_${localout[$i]}
4225	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4226
4227	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4228	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4229	printf "\n or higher cycle\n"
4230	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4231
4232	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4233
4234	if [[ $localhost = nech ]]
4235	then
4236	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4237	else
4238	if [[ $LOGNAME = b323013 ]]
4239	then
4240	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4241	else
4242	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4243	fi
4244	fi
4245
4246	else
4247
4248	# TRANSFER INNERHALB DIESES JOBS
4249	transfer_failed=false
4250	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4251	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4252	if [[ $localhost = lccrayb ]]
4253	then
4254	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4255	elif [[ $localhost = lccrayh ]]
4256	then
4257	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4258	else
4259	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4260	fi
4261	[[ $? != 0 ]] && transfer_failed=true
4262
4263	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4264	# LOKALER MASCHINE ANLEGEN
4265	if [[ $transfer_failed = true ]]
4266	then
4267	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4268	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4269
4270	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4271	# ANLEGEN
4272	eval local_catalog=${pathout[$i]}
4273	if [[ ! -d $local_catalog ]]
4274	then
4275	printf " *** local directory does not exist. Trying to create:\n"
4276	printf " $local_catalog \n"
4277	mkdir -p $local_catalog
4278	fi
4279
4280	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4281	transfer_problems=true
4282	fi
4283	fi
4284	else
4285
4286	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4287	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4288	actionout[$i]=a
4289	fi
4290	fi
4291
4292
4293	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4294	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4295	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4296	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4297	if [[ "${actionout[$i]}" = fl ]]
4298	then
4299	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4300	chmod g+rx $tmp_data_catalog
4301	if [[ $files_for_pes = false ]]
4302	then
4303	printf "\n >>> OUTPUT: ${localout[$i]} to"
4304	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4305	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4306	else
4307	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4308	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4309	mkdir $tmp_data_catalog/${frelout[$i]}
4310	cd ${localout[$i]}
4311	for file in $(ls *)
4312	do
4313	ln -f $file $tmp_data_catalog/${frelout[$i]}
4314	done
4315	cd $TEMPDIR
4316	fi
4317
4318
4319	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4320	if [[ $store_on_archive_system = true ]]
4321	then
4322
4323	if [[ $archive_system = asterix ]]
4324	then
4325	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4326	if [[ $files_for_pes = false ]]
4327	then
4328	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4329	else
4330	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4331	fi
4332	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4333	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4334	echo "then" >> archive_${frelout[$i]}
4335	echo " do_stageout=false" >> archive_${frelout[$i]}
4336	echo "else" >> archive_${frelout[$i]}
4337	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4338	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4339	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4340	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4341	if [[ $files_for_pes = false ]]
4342	then
4343	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4344	else
4345	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4346	fi
4347	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4348	echo "fi" >> archive_${frelout[$i]}
4349	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4350	elif [[ $archive_system = DMF ]]
4351	then
4352	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4353	if [[ $files_for_pes = false ]]
4354	then
4355	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4356	locat=DMF
4357	exit
4358	else
4359	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4360	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4361	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4362	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4363	fi
4364	elif [[ $archive_system = tivoli ]]
4365	then
4366	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4367	if [[ $files_for_pes = false ]]
4368	then
4369	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4370	echo "set -x" >> archive_${frelout[$i]}
4371	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4372	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4373	else
4374
4375	echo "set -x" >> archive_${frelout[$i]}
4376	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4377	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4378	cd $tmp_data_catalog
4379	all_files=`ls -1 ${frelout[$i]}/*`
4380	cd - > /dev/null
4381	(( inode = 0 ))
4382	(( tp1 = tasks_per_node + 1 ))
4383	while (( inode < nodes ))
4384	do
4385	# echo "*** all_files = \"$all_files\" "
4386	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4387	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4388	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4389	# echo "*** files = \"$files\" "
4390	# echo "*** all_files = \"$all_files\" "
4391	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4392	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4393	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4394	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4395	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4396	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4397	(( inode = inode + 1 ))
4398	done
4399	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4400	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4401	fi
4402	elif [[ $archive_system = ut ]]
4403	then
4404	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4405	if [[ $files_for_pes = false ]]
4406	then
4407	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4408	echo "set -x" >> archive_${frelout[$i]}
4409	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4410	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4411	else
4412
4413	echo "set -x" >> archive_${frelout[$i]}
4414	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4415	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4416	cd $tmp_data_catalog
4417	all_files=`ls -1 ${frelout[$i]}/*`
4418	cd - > /dev/null
4419	(( inode = 0 ))
4420	(( tp1 = tasks_per_node + 1 ))
4421	while (( inode < nodes ))
4422	do
4423	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4424	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4425	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4426	(( inode = inode + 1 ))
4427	done
4428	fi
4429	elif [[ $archive_system = none ]]
4430	then
4431	printf " +++ archiving on $localhost not available!\n"
4432	fi
4433
4434	if [[ $archive_system != none ]]
4435	then
4436	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4437	then
4438	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4439	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4440	elif [[ $localhost = nech ]]
4441	then
4442	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4443	fi
4444	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4445	fi
4446	else
4447	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4448	fi
4449
4450
4451	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4452	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4453	if [[ $files_for_pes = false ]]
4454	then
4455	cat /dev/null > ${pathout[$i]}
4456	else
4457	mkdir -p ${pathout[$i]}
4458	fi
4459
4460	fi
4461
4462
4463	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4464	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4465	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4466	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4467	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4468	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4469	if [[ "${actionout[$i]}" = ar ]]
4470	then
4471	if [[ $files_for_pes = false ]]
4472	then
4473	printf "\n >>> OUTPUT: ${localout[$i]} to"
4474	printf "\n ${pathout[$i]}"
4475	printf "\n File will be copied to archive-system ($archive_system) !\n"
4476	else
4477	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4478	printf "\n ${pathout[$i]}"
4479	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4480	fi
4481	mv ${localout[$i]} ${frelout[$i]}
4482
4483	file_saved=false
4484
4485	if [[ $archive_system = asterix ]]
4486	then
4487	do_stageout=true
4488	(( stageout_anz = 0 ))
4489	while [[ $do_stageout = true ]]
4490	do
4491	if [[ $files_for_pes = false ]]
4492	then
4493	stageout ${frelout[$i]} > STAGE_OUTPUT
4494	else
4495	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4496	fi
4497	cat STAGE_OUTPUT
4498	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4499	then
4500	file_saved=true
4501	do_stageout=false
4502	else
4503	if [[ $files_for_pes = false ]]
4504	then
4505	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4506	else
4507	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4508	fi
4509	(( stageout_anz = stageout_anz + 1 ))
4510	if (( stageout_anz == 10 ))
4511	then
4512	printf "\n +++ stoped after 10 unsuccessful tries!"
4513	archive_save=false
4514	do_stageout=false
4515	else
4516	printf "\n *** new try to store on archive after 15 min:"
4517	sleep 900
4518	fi
4519	fi
4520	done
4521	elif [[ $archive_system = DMF ]]
4522	then
4523	if [[ $files_for_pes = false ]]
4524	then
4525	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4526	locat=DMF
4527	exit
4528	else
4529	rm -rf $ARCHIVE/${frelout[$i]}
4530	cp -r ${frelout[$i]} $ARCHIVE
4531	fi
4532	file_saved=true
4533	elif [[ $archive_system = tivoli ]]
4534	then
4535	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4536	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4537	# GELEGT WERDEN
4538	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4539	chmod g+rx $tmp_data_catalog
4540	if [[ $files_for_pes = false ]]
4541	then
4542	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4543	else
4544	mkdir $tmp_data_catalog/${frelout[$i]}
4545	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4546	fi
4547
4548	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4549	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4550	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4551	if [[ $files_for_pes = false ]]
4552	then
4553	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4554	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4555	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4556	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4557	else
4558	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4559	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4560	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4561	fi
4562
4563	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4564	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4565	file_saved=true
4566
4567	elif [[ $archive_system = ut ]]
4568	then
4569	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4570	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4571	# GELEGT WERDEN
4572	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4573	chmod g+rx $tmp_data_catalog
4574	if [[ $files_for_pes = false ]]
4575	then
4576	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4577	else
4578	mkdir $tmp_data_catalog/${frelout[$i]}
4579	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4580	fi
4581
4582	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4583	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4584	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4585	if [[ $files_for_pes = false ]]
4586	then
4587	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4588	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4589	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4590	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4591	else
4592	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4593	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4594	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4595	fi
4596
4597	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4598	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4599	file_saved=true
4600
4601	else
4602	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4603	archive_save=false
4604	fi
4605	if [[ $file_saved = true ]]
4606	then
4607	if [[ $files_for_pes = false ]]
4608	then
4609	cat /dev/null > ${pathout[$i]}
4610	else
4611	mkdir -p ${pathout[$i]}
4612	fi
4613	fi
4614	fi
4615
4616	# APPEND AUF LOKALER MASCHINE
4617	if [[ "${actionout[$i]}" = "a" ]]
4618	then
4619	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4620	then
4621	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4622	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4623	else
4624	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4625	cat ${localout[$i]} >> ${pathout[$i]}
4626	fi
4627	fi
4628
4629	# KOPIEREN AUF LOKALER MASCHINE
4630	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4631	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4632	then
4633
4634	# KOPIEREN AUF EINPROZESSORMASCHINE
4635	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4636	then
4637	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4638	if [[ $link_local_output = true ]]
4639	then
4640	printf " using ln -f\n"
4641	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4642	fi
4643	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4644	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4645	then
4646	if [[ $link_local_output = true ]]
4647	then
4648	printf " ln failed, using cp...\n"
4649	fi
4650	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4651	fi
4652	else
4653	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4654	if [[ $link_local_output = true ]]
4655	then
4656	printf " using ln -f\n"
4657	ln -f ${localout[$i]} ${pathout[$i]}
4658	fi
4659	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4660	if [[ ! -f "${pathout[$i]}" ]]
4661	then
4662	if [[ $link_local_output = true ]]
4663	then
4664	printf " ln failed, using cp...\n"
4665	fi
4666	cp ${localout[$i]} ${pathout[$i]}
4667	fi
4668	fi
4669
4670	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4671	then
4672
4673	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4674	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4675	# WIRD DANN KOPIERT
4676	# PER MOVE UMBENANNT WERDEN
4677	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4678	if [[ $link_local_output = true ]]
4679	then
4680	printf " using ln -f\n"
4681	mkdir ${pathout[$i]}
4682	cd ${localout[$i]}
4683	for file in $(ls *)
4684	do
4685	ln -f $file ${pathout[$i]}
4686	done
4687	cd $TEMPDIR
4688	fi
4689	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4690	if [[ ! -f "${pathout[$i]}/_0000" ]]
4691	then
4692	if [[ $link_local_output = true ]]
4693	then
4694	printf " ln failed for .../_0000, using cp...\n"
4695	fi
4696	cp -r ${localout[$i]} ${pathout[$i]}
4697	fi
4698
4699	fi
4700	fi
4701	done
4702	if (( i != 0 ))
4703	then
4704	if [[ $transfer_problems = true ]]
4705	then
4706	printf "\n$striche\n *** OUTPUT-files saved"
4707	printf "\n +++ WARNING: some data transfers failed! \n"
4708	else
4709	printf "\n$striche\n *** all OUTPUT-files saved \n"
4710	fi
4711	fi
4712
4713
4714	# EVENTUELL FOLGEJOB STARTEN
4715	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4716	if [[ -f CONTINUE_RUN ]]
4717	then
4718
4719	if [[ $archive_save = true ]]
4720	then
4721
4722	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4723	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4724	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4725	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4726	# HANDEN
4727	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4728	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4729	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4730	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4731	then
4732	mc=`echo $mc \| sed 's/#/f/g'`
4733	fi
4734
4735
4736	# JOB STARTEN
4737	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4738	echo " $mc"
4739	printf "\n$striche\n"
4740	if [[ $localhost != $fromhost ]]
4741	then
4742
4743	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = lccrayh \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4744	then
4745	echo "*** ssh will be used to initiate restart-runs!"
4746	echo " return_addres=\"$return_addres\" "
4747	echo " return_username=\"$return_username\" "
4748	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4749	then
4750	if [[ $localhost = ibmh ]]
4751	then
4752	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4753	elif [[ $localhost = lccrayb ]]
4754	then
4755	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4756	elif [[ $localhost = lccrayh ]]
4757	then
4758	ssh $usern@hlogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4759
4760	else
4761	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4762	fi
4763	else
4764	if [[ $localhost = ibmkisti ]]
4765	then
4766	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4767	elif [[ $localhost = lcflow ]]
4768	then
4769	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4770	elif [[ $localhost = lccrayb ]]
4771	then
4772	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4773	elif [[ $localhost = lccrayh ]]
4774	then
4775	ssh $usern@130.75.4.1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4776	else
4777	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4778	fi
4779	fi
4780	else
4781	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4782	locat=restart; exit
4783	fi
4784
4785	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4786	# DER AKTUELLE JOB ENDET
4787	if [[ $queue = special1q ]]
4788	then
4789	sleep 120
4790	else
4791	sleep 30
4792	fi
4793
4794	else
4795
4796	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4797	# RUFEN WERDEN, AUSSER AUF lcfimm
4798	cd $LOCAL_PWD
4799	if [[ $localhost = lcfimm ]]
4800	then
4801	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4802	elif [[ $localhost = lckyuh ]]
4803	then
4804	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4805	printf "\n please restart job manually using command:\n"
4806	printf "\n \"$mc\" "
4807	else
4808	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4809	fi
4810	cd - > /dev/null
4811	fi
4812	if [[ $localhost = lckyuh ]]
4813	then
4814	printf "\n$striche\n *** restart-run to be initiated manually\n"
4815	else
4816	printf "\n$striche\n *** restart-run initiated \n"
4817	fi
4818
4819
4820	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4821	# GEHOLT WORDEN SIND, LOESCHEN
4822	(( i = 0 ))
4823	while (( i < iin ))
4824	do
4825	(( i = i + 1 ))
4826	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4827	then
4828	rm -r $tmp_data_catalog/${frelin[$i]}
4829	fi
4830	done
4831
4832	else
4833
4834	printf "\n +++ no restart-run possible, since errors occured"
4835	printf "\n during the archive process"
4836	fi
4837
4838	fi
4839
4840
4841
4842	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4843	if [[ "$email_notification" != "none" ]]
4844	then
4845
4846	if [[ $localhost != $fromhost ]]
4847	then
4848	if [[ -f CONTINUE_RUN ]]
4849	then
4850	echo "PALM restart run necessary" > email_text
4851	echo "description header of actual run:" >> email_text
4852	cat CONTINUE_RUN >> email_text
4853	echo "mrun-command to restart:" >> email_text
4854	echo "$mc" >> email_text
4855	else
4856	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4857	fi
4858	mail $email_notification < email_text
4859	printf "\n *** email notification sent to \"$email_notification\" "
4860	fi
4861	fi
4862
4863
4864
4865	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4866	cd $HOME
4867	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4868
4869	else
4870
4871
4872	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4873	# CHENDE AKTIONEN DURCHGEFUEHRT
4874
4875	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4876	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4877	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4878	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4879	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4880	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4881	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4882	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4883	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4884	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4885	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4886	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4887	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4888	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4889	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4890	if [[ $use_openmp = true ]]
4891	then
4892	mrun_com=${mrun_com}" -O $threads_per_task"
4893	fi
4894	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4895	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4896	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4897	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4898	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4899	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4900	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4901	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4902	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4903	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4904	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4905	if [[ $do_remote = true ]]
4906	then
4907	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4908	fi
4909
4910
4911	# create executable for batch job
4912	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4913	then
4914
4915	printf "\n *** creating the executable for batch job\n"
4916
4917	# method only works for batch jobs on local hosts
4918	if [[ $host != $localhost ]]
4919	then
4920	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4921	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4922	locat=create_executable; exit
4923	fi
4924
4925	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4926	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4927
4928	cp $make_depository .
4929	tar -xf $make_depository > /dev/null 2>&1
4930	cp ../* . > /dev/null 2>&1
4931
4932	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4933
4934	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4935	then
4936	printf "\n +++ error occured while compiling or linking"
4937	locat=compile
4938	exit
4939	fi
4940
4941	mv a.out ..
4942	cd - > /dev/null 2>&1
4943	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4944
4945	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4946
4947	fi
4948
4949
4950	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4951	jobfile=jobfile.$RANDOM
4952
4953
4954	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4955	echo "mkdir $TEMPDIR" >> $jobfile
4956	echo "cd $TEMPDIR" >> $jobfile
4957
4958
4959	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4960	if [[ $do_trace = true ]]
4961	then
4962	echo "set -x" >> $jobfile
4963	else
4964	echo "set +vx" >> $jobfile
4965	fi
4966
4967
4968	# initialize the environment and load modules
4969	if [[ "$init_cmds" != "" ]]
4970	then
4971	echo "$init_cmds" >> $jobfile
4972	fi
4973	if [[ "$module_calls" != "" ]]
4974	then
4975	echo "$module_calls" >> $jobfile
4976	fi
4977
4978
4979	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4980	# DATEI FUER DEN JOB
4981	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf \|\| $host = lccrayh ]]
4982	then
4983
4984	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4985	# KOPIEREN
4986	if [[ $restart_run != true ]]
4987	then
4988	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4989	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4990	fi
4991
4992	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4993	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4994	echo "set -x" >> $jobfile
4995	if [[ $host = $localhost ]]
4996	then
4997
4998	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4999	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
5000	if [[ $(echo $host \| cut -c1-6) = lccray ]]
5001	then
5002	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5003	else
5004	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5005	fi
5006
5007	else
5008	if [[ $host = ibmkisti ]]
5009	then
5010	# on KISTI's IBM firewall is only opened on interactive node
5011	echo "localdir=\`pwd\`" >> $jobfile
5012	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5013	elif [[ $host = lccrayb ]]
5014	then
5015	echo "localdir=\`pwd\`" >> $jobfile
5016	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5017	elif [[ $host = lccrayh ]]
5018	then
5019	echo "localdir=\`pwd\`" >> $jobfile
5020	echo "ssh $SSH_PORTOPT $remote_username@hlogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5021
5022	else
5023	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5024	fi
5025	fi
5026	echo "export SOURCES_COMPLETE=true" >> $jobfile
5027
5028	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
5029	# ARBEITSVERZEICHNIS VERSCHIEBEN
5030	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
5031	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
5032	echo "chmod u+rwx $mrun_script_name" >> $jobfile
5033	echo "execute_mrun=true" >> $jobfile
5034	echo " " >> $jobfile
5035
5036	else
5037
5038	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
5039	# SOWIE GEGEBENENFALLS DES MAKEFILES
5040	if [[ $do_compile = true ]]
5041	then
5042
5043	source_catalog=SOURCES_FOR_RUN_$fname
5044
5045	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
5046	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
5047	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
5048	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
5049	echo "export SOURCES_COMPLETE=true" >> $jobfile
5050	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
5051
5052	for filename in $source_list
5053	do
5054	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5055	echo "cat > $filename << \"%END%\"" >> $jobfile
5056	cat $source_catalog/$filename >> $jobfile
5057	echo " " >> $jobfile
5058	echo "%END%" >> $jobfile
5059	echo " " >> $jobfile
5060	done
5061
5062	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5063	echo "cat > Makefile << \"%END%\"" >> $jobfile
5064	cat $source_catalog/Makefile >> $jobfile
5065	echo " " >> $jobfile
5066	echo "%END%" >> $jobfile
5067	echo " " >> $jobfile
5068
5069	echo "cd - > /dev/null" >> $jobfile
5070
5071	fi
5072
5073
5074	# ABSPEICHERN DER KONFIGURATIONSDATEI
5075	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5076	# Lines with #$ coming from the svn keyword substitution are
5077	# removed from the config file in order to avoid problems
5078	# with the SGE batch system
5079	echo "cat > $config_file << \"%END%\"" >> $jobfile
5080	if [[ $host = lckyuh ]]
5081	then
5082	# no cross compiler on compute node
5083	sed 's/frtpx/frt/g' $config_file >> $jobfile
5084	else
5085	sed 's/#$.*//g' $config_file >> $jobfile
5086	fi
5087	echo "%END%" >> $jobfile
5088	echo " " >> $jobfile
5089
5090
5091	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5092	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5093	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5094	if [[ $host = lckyuh ]]
5095	then
5096	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5097	else
5098	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5099	fi
5100	echo "%END%" >> $jobfile
5101	echo "chmod u+x $mrun_script_name" >> $jobfile
5102	echo "execute_mrun=true" >> $jobfile
5103	echo " " >> $jobfile
5104
5105	fi
5106
5107
5108	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5109	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5110	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5111	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5112	if [[ $do_remote = true ]]
5113	then
5114	(( i = 0 ))
5115	while (( i < iin ))
5116	do
5117	(( i = i + 1 ))
5118	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5119	if [[ "${transin[$i]}" = job ]]
5120	then
5121	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5122	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5123	echo " " >> $jobfile
5124	echo "%END%" >> $jobfile
5125	else
5126	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5127	fi
5128
5129	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5130	echo "if [[ \$? = 1 ]]" >> $jobfile
5131	echo "then" >> $jobfile
5132	echo " echo \" \" " >> $jobfile
5133	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5134	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5135	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5136	echo " execute_mrun=false" >> $jobfile
5137	echo "fi" >> $jobfile
5138	done
5139	fi
5140
5141	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5142	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5143	echo "LOCAL_PWD=$working_directory" >> $jobfile
5144	echo "export LOCAL_PWD" >> $jobfile
5145
5146	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5147	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5148	echo "export LOCAL_MRUN_PATH" >> $jobfile
5149
5150	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5151	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5152	then
5153	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5154	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5155	then
5156	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5157	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5158	fi
5159
5160	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5161	echo "set -x" >> $jobfile
5162	echo "queue=$queue" >> $jobfile
5163	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5164	echo 'ls -al; echo `pwd`' >> $jobfile
5165	echo "cd \$HOME" >> $jobfile
5166	echo "rm -rf $TEMPDIR" >> $jobfile
5167
5168
5169
5170
5171	# JOB PER SUBJOB STARTEN
5172	if [[ $silent = false ]]
5173	then
5174	printf "\n "
5175	else
5176	printf "\n\n"
5177	fi
5178
5179	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5180	rm -rf $jobfile
5181
5182
5183	fi # ENDE REMOTE-TEIL
5184
5185
5186
5187	# ENDE DER PROZEDUR

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