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source: palm/trunk/SCRIPTS/mrun @ 1280

Last change on this file since 1280 was 1280, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1280 2014-01-28 12:19:31Z raasch $
29	#
30	# 1279 2014-01-28 12:10:14Z raasch
31	# tasks_per_node must not be an integral divisor of numprocs any more. This was done
32	# in order to remove annoying restrictions concerning the number of processors which
33	# appear on machines with larger nodes (e.g. containing 24 cores). Now without this
34	# restriction, one of the nodes will be filled with less than the given number of
35	# tasks per node. A respective warning is given.
36	#
37	# 1274 2014-01-09 13:14:54Z heinze
38	# adjustments for lccrayh
39	#
40	# 1272 2014-01-08 10:19:32Z witha
41	# small adjustment for lcflow
42	#
43	# 1270 2013-12-16 11:05:01Z fricke
44	# call of combine_plot_fields adjusted for lccrayb/lccrayh
45	#
46	# 1255 2013-11-07 14:43:35Z raasch
47	# further adjustments for lccrayb remote access
48	#
49	# 1241 2013-10-30 11:36:58Z heinze
50	# Enable use of nudging input and input of large scale forcing from
51	# external files
52	#
53	# 1229 2013-09-20 06:55:19Z raasch
54	# further adjustments for lccrayb
55	#
56	# 1224 2013-09-16 07:27:23Z raasch
57	# first adjustments for lccrayb
58	#
59	# 1210 2013-08-14 10:58:20Z raasch
60	# fftw support added
61	#
62	# 1201 2013-07-10 16:17:59Z witha
63	# adjustments for Forwind cluster (lcflow)
64	#
65	# 1199 2013-07-05 14:52:22Z raasch
66	# adjustments for CSC Helsinki (lccrayf),
67	# executables for batch jobs can be created in advance, in order to avoid calling
68	# the compiler within the batch job (only works if batch jobs are submitted on
69	# local host)
70	#
71	# 1190 2013-06-25 09:39:21Z heinze
72	# enable use of automatic restarts for ibmh
73	# use of cluster/express queue enabled (ibmh)
74	#
75	# 1124 2013-04-09 15:46:52Z raasch
76	# variable "memory" is exported via typeset option -x, because otherwise an unknown
77	# side effect may lead to data loss while getopts is reading the script-option arguments
78	#
79	# 1122 2013-04-09 08:37:16Z heinze
80	# Bugfix: change type of variable last_char
81	#
82	# 1119 2013-04-05 15:11:19Z raasch
83	# Bugfix for setting -T option for subjob
84	#
85	# 1108 2013-03-05 07:03:32Z raasch
86	# bugfix for coupled runs on lckyut/lckyuh
87	#
88	# 1106 2013-03-04 05:31:38Z raasch
89	# --stdin argument for mpiexec on lckyuh
90	# -y and -Y settings output to header
91	#
92	# 1103 2013-02-20 02:15:53Z raasch
93	# default script runs again under ksh, because of unsolved problems with read
94	# from stdin: when bash script is called from a ksh, message "read error: 0:
95	# Resource temporarily unavailable" appears and script does not stop,
96	# further bash compatibility adjustments,
97	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
98	# on lckyuh, but mrun does not terminate and issues a warning instead
99	#
100	# 1101 2013-02-17 10:20:21Z raasch
101	# script now running under bash instead of ksh, which required small adjustments
102	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
103	# read from stdin),
104	# cross compilername on lckyuh compute nodes replaced by real compiler name
105	#
106	# 1099 2013-02-10 01:47:43Z raasch
107	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
108	# and for Forwind cluster (lcflow)
109	# small further adjustments for lckyut
110	#
111	# 1094 2013-02-03 01:52:12Z raasch
112	# explicit ssh/scp port can be set in config file with environment variable
113	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
114	# decalpha parts (yonsei) removed
115	#
116	# 2013-02-02 07:06:13Z raasch
117	# adjustments for Kyushu-University computing center (lckyut - tatara)
118	#
119	# 1083 2013-01-04 10:22:09Z maronga
120	# bugfix in parameter file check (read %cpp_options was missing)
121	#
122	# 1069 2012-11-28 16:18:43Z maronga
123	# bugfix: coupling mode was always set to mpi2, typos removed
124	#
125	# 1058 2012-11-21 07:00:35Z raasch
126	# Intel inspector (inspxe) is given the number of PEs instead of the number of
127	# nodes
128	#
129	# 1046 2012-11-09 14:38:45Z maronga
130	# code put under GPL (PALM 3.9)
131	#
132	# 21/03/94 - Siggi - first version finished
133	# 03/03/94 - Siggi - script development started
134	#
135	#--------------------------------------------------------------------------------#
136	# mrun - script for running PALM jobs
137	#--------------------------------------------------------------------------------#
138
139
140
141	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
142
143	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
144	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
145	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
146
147	AddFilenames=""
148	additional_conditions=""
149	add_source_path=""
150	afname=""
151	archive_save=true
152	archive_system=none
153	check_namelist_files=true
154	combine_plot_fields=true
155	compiler_name=""
156	cond1=""
157	cond2=""
158	config_file=.mrun.config
159	coupled_dist=""
160	coupled_mode="mpi1"
161	cpp_opts=""
162	cpp_options=""
163	cpumax=0
164	cpurest=0
165	create_executable_for_batch=false
166	delete_temporary_catalog=true
167	do_batch=false
168	do_compile=true
169	do_remote=false
170	do_stagein=true
171	do_stageout=true
172	do_trace=false
173	email_notification="none"
174	exclude=""
175	executable=""
176	execution_error=false
177	fftw_inc=""
178	fftw_lib=""
179	fftw_support=false
180	fimm=false
181	fname=test
182	fromhost=""
183	global_revision=""
184	group_number=none
185	host=""
186	host_file=""
187	hp=""
188	ignore_archive_error=false
189	input_list=""
190	interpreted_config_file=""
191	job_catalog="~/job_queue"
192	job_on_file=""
193	keep_data_from_previous_run=false
194	link_local_input=false
195	link_local_output=false
196	localhost_realname=$(hostname)
197	local_compile=false
198	local_dvrserver_running=.FALSE.
199	locat=normal
200	mainprog=""
201	makefile=""
202	max_par_io_str=""
203	mc=$0
204	while [[ $(echo $mc \| grep -c "/") != 0 ]]
205	do
206	mc=`echo $mc \| cut -f2- -d"/"`
207	done
208	module_calls=""
209	mrun_script_name=$mc
210	netcdf_inc=""
211	netcdf_lib=""
212	netcdf_support=false
213	node_usage=default
214	numprocs=""
215	numprocs_atmos=0
216	numprocs_ocean=0
217	OOPT=""
218	openmp=false
219	output_list=""
220	package_list=""
221	punkte="..........................................................."
222	queue=none
223	read_from_config=""
224	restart_run=false
225	if [[ `hostname` = rte10 ]]
226	then
227	return_addres=133.5.185.60
228	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
229	elif [[ `hostname` = climate0 ]]
230	then
231	return_addres=165.132.26.68
232	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
233	elif [[ `hostname` = urban00 ]]
234	then
235	return_addres=147.46.30.151
236	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
237	else
238	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
239	fi
240	return_password=""
241	return_username=$LOGNAME
242	remotecall=false
243	remote_username=""
244	run_coupled_model=false
245	run_mode=""
246	scirocco=false
247	store_on_archive_system=false
248	striche=" ----------------------------------------------------------------------------"
249	silent=false
250	source_list=""
251	source_path=SOURCE
252	tasks_per_node=""
253	threads_per_task=1
254	tmpcreate=false
255	tmp_data_catalog=""
256	transfer_problems=false
257	usern=$LOGNAME
258	use_openmp=false
259	version="MRUN 2.0 Rev$Rev: 1280 $"
260	working_directory=`pwd`
261	TOPT=""
262	XOPT=""
263	zeit=$( date \| cut -c 12-19 )
264
265	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
266	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
267	# effect may cause data loss when getopts is reading the
268	# script-option arguments
269	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes remaining_pes sekunden tp1
270
271
272
273
274	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
275	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
276
277	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
278	# EXPORTIERT WERDEN
279	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
280	export group_number input_list numprocs output_list queue run_mode
281
282
283
284	# FEHLERBEHANDLUNG
285	# BEI EXIT:
286	trap 'rm -rf $working_directory/tmp_mrun
287	if [[ $locat != localhost ]]
288	then
289	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
290	# then
291	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
292	#MRUN-calls on $localhost
293	#
294	#date and time user localhost remotehost termination mrun-command
295	#--------------------------------------------------------------------------------------------------------------------
296	#%STATEND%
297	# chmod 666 ${mrun_path}/statistik/mrun_statistik
298	# fi
299	#
300	# # EINTRAG IN DIE STATISTIK-DATEI
301	# string1=`date` #-L35
302	# string2=$usern #-L12
303	# string3=$localhost_realname #-L12
304	# string4=$host #-L12
305	# string5=$locat #-L12
306	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
307	# then
308	# if [[ $do_batch = true ]]
309	# then
310	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
311	# else
312	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
313	# fi
314	# fi
315	echo " " > /dev/null
316	fi
317
318	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
319	then
320
321	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
322	(( i = 0 ))
323	while (( i < iec ))
324	do
325	(( i = i + 1 ))
326	printf "\n *** Execution of ERROR-command:\n"
327	printf " >>> ${err_command[$i]}\n"
328	eval ${err_command[$i]}
329	done
330	if [[ -n $interpreted_config_file ]]
331	then
332	rm -rf $interpreted_config_file
333	fi
334	if [[ -n .mrun_environment ]]
335	then
336	rm -rf .mrun_environment
337	fi
338	if [[ $tmpcreate = true ]]
339	then
340	printf "\n *** Contents of \"$TEMPDIR\":\n"
341	ls -al; cd
342	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
343	fi
344	if [[ "$dvrserver_id" != "" ]]
345	then
346	echo "+++ killing dvrserver_id=$dvrserver_id"
347	kill $dvrserver_id
348	fi
349	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
350	then
351	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
352	fi
353	printf "\n\n+++ MRUN killed \n\n"
354	elif [[ $locat != control_c ]]
355	then
356	printf "\n\n --> all actions finished\n\n"
357	printf " Bye, bye $usern !!\n\n"
358	fi' exit
359
360
361	# BEI TERMINAL-BREAK:
362	trap 'rm -rf $working_directory/tmp_mrun
363	rm -rf $working_directory/tmp_check_namelist_files
364	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
365	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
366	then
367	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
368	fi
369	if [[ "$dvrserver_id" != "" ]]
370	then
371	echo "+++ killing dvrserver_id=$dvrserver_id"
372	kill $dvrserver_id
373	fi
374	printf "\n+++ MRUN killed by \"^C\" \n\n"
375	locat=control_c
376	exit
377	' 2
378
379
380	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
381	# BEEN SET
382	if [[ "$PALM_BIN" = "" ]]
383	then
384	printf "\n +++ environment variable PALM_BIN has not been set"
385	printf "\n please set it to the directory where the PALM scripts are located"
386	locat=palm_bin; exit
387	fi
388	export PATH=$PALM_BIN:$PATH
389
390
391
392	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
393	# FUER FOLGEJOBS BENOETIGT WIRD
394	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
395	do
396	case $option in
397	(a) afname=$OPTARG;;
398	(A) store_on_archive_system=true; mc="$mc -A";;
399	(b) do_batch=true; mc="$mc -b";;
400	(B) delete_temporary_catalog=false; mc="$mc -B";;
401	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
402	(C) restart_run=true; mc="$mc -C";;
403	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
404	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
405	(F) job_on_file="-D"; mc="$mc -F";;
406	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
407	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
408	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
409	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
410	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
411	(I) ignore_archive_error=true; mc="$mc -I";;
412	(k) keep_data_from_previous_run=true; mc="$mc -k";;
413	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
414	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
415	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
416	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
417	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
418	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
419	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
420	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
421	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
422	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
423	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
424	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
425	(S) read_from_config=false; mc="$mc -S";;
426	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
427	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
428	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
429	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
430	(v) silent=true; mc="$mc -v";;
431	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
432	(x) do_trace=true;set -x; mc="$mc -x";;
433	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
434	(y) ocean_file_appendix=true; mc="$mc -y";;
435	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
436	(z) check_namelist_files=false; mc="$mc -z";;
437	(Z) combine_plot_fields=false; mc="$mc -Z";;
438	(\?) printf "\n +++ unknown option $OPTARG \n"
439	printf "\n --> type \"$0 ?\" for available options \n"
440	locat=parameter;exit;;
441	esac
442	done
443
444
445	# EVTL. POSITIONSPARAMETER EINLESEN
446	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
447	(( to_shift = $OPTIND - 1 ))
448	shift $to_shift
449
450	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
451	if [[ "$1" = "?" ]]
452	then
453	(printf "\n *** mrun can be called as follows:\n"
454	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
455	printf "\n Description of available options:\n"
456	printf "\n Option Description Default-Value"
457	printf "\n -a base name of input files equiv. -d"
458	printf "\n -A archiving when using file-attribute fl"
459	printf "\n -b batch-job on local machine ---"
460	printf "\n -B do not delete temporary directory at end ---"
461	printf "\n -c configuration file .mrun.config"
462	printf "\n -d base name of files attached to program test"
463	printf "\n -D preprocessor(cpp)-directives \"\" "
464	printf "\n -F create remote job file only ---"
465	printf "\n -h execution host $localhost_realname"
466	printf "\n -i INPUT control list \"\" "
467	printf "\n -I archiving errors of previous batch-jobs"
468	printf "\n will be ignored"
469	printf "\n -k keep data from previous run"
470	printf "\n -K additional conditions for controling"
471	printf "\n usage of conditional code and"
472	printf "\n env-variables in configuration file \"\" "
473	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
474	printf "\n -M Makefile name Makefile"
475	printf "\n -n node usage (shared/not_shared) depending on -h"
476	printf "\n -o OUTPUT control list \"\" "
477	printf "\n -O use OpenMP ---"
478	printf "\n -p software package list \"\" "
479	printf "\n -q queue \"$queue\" "
480	printf "\n -r run control list (combines -i -o) \"\" "
481	printf "\n -s filenames of routines to be compiled \"\" "
482	printf "\n must end with .f, .f90, .F, or .c !"
483	printf "\n use \"..\" for more than one file and wildcards"
484	printf "\n -s LM compiles all locally modified files"
485	printf "\n -S config file interpreted by shellscript ---"
486	printf "\n -t allowed cpu-time in seconds (batch) 0"
487	printf "\n -T tasks per node depending on -h"
488	printf "\n -u username on remote machine \"\" "
489	printf "\n -v no prompt for confirmation ---"
490	printf "\n -w maximum parallel io streams as given by -X"
491	printf "\n -x tracing of mrun for debug purposes ---"
492	printf "\n -X # of processors (on parallel machines) 1"
493	printf "\n -y add appendix \"_O\" to all local output"
494	printf "\n files (ocean precursor runs followed by"
495	printf "\n coupled atmosphere-ocean runs) ---"
496	printf "\n -Y run coupled model, \"#1 #2\" with"
497	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
498	printf "\n -z disable a priori parameter file check ---"
499	printf "\n -Z skip combine_plot_fields at the end of "
500	printf "\n the simulation ---"
501	printf "\n "
502	printf "\n Possible values of positional parameter <modus>:"
503	printf "\n \"?\" - this outline \n\n") \| more
504	exit
505	elif [[ "$1" != "" ]]
506	then
507	printf "\n +++ positional parameter $1 unknown \n"
508	locat=parameter; exit
509	fi
510
511
512
513	# KURZE STARTMELDUNG
514	printf "\n*** $version "
515	printf "\n will be executed. Please wait ..."
516
517
518
519	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
520	if [[ ! -f $config_file ]]
521	then
522	printf "\n\n +++ configuration file: "
523	printf "\n $config_file"
524	printf "\n does not exist"
525	locat=connect; exit
526	fi
527
528
529	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
530	line=""
531	grep "%host_identifier" $config_file > tmp_mrun
532	while read line
533	do
534	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
535	then
536	HOSTNAME=`echo $line \| cut -d" " -s -f2`
537	host_identifier=`echo $line \| cut -d" " -s -f3`
538	if [[ $localhost_realname = $HOSTNAME ]]
539	then
540	localhost=$host_identifier
541	break
542	fi
543	fi
544	done < tmp_mrun
545
546	if [[ "$localhost" = "" ]]
547	then
548	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
549	printf "\n for local host \"$localhost_realname\"."
550	printf "\n Please add line"
551	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
552	printf "\n to the configuration file."
553	locat=localhost; exit
554	fi
555
556
557	# HOSTSPEZIFISCHE VARIABLEN SETZEN
558	case $localhost_realname in
559	(r1\|r2\|h01\|b01) archive_system=tivoli;;
560	(cs*) archive_system=ut;;
561	(fimm.bccs.uib.no) fimm=true;;
562	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
563	(scirocco) scirocco=true;;
564	esac
565
566
567
568	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
569	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
570	[[ "$afname" = "" ]] && afname=$fname
571
572
573	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
574	if [[ "$run_mode" != "" ]]
575	then
576	input_list="$input_list $run_mode"
577	output_list="$output_list $run_mode"
578	fi
579
580
581	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
582	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
583	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
584	# STARTET)
585	if [[ "$fromhost" = "" ]]
586	then
587	fromhost=$localhost
588	fi
589
590
591	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
592	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
593	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
594	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
595	if [[ -n $host && "$host" != $localhost ]]
596	then
597	do_batch=true
598	do_remote=true
599	case $host in
600	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
601	(*) printf "\n"
602	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
603	printf "\n is not available"
604	locat=nqs; (( iec = 0 )); exit;;
605	esac
606	else
607	host=$localhost
608	fi
609
610
611	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
612	if [[ -n $additional_conditions ]]
613	then
614	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
615	cond1=`echo $additional_conditions \| cut -d" " -f1`
616	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
617	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
618	if [[ -n $dummy ]]
619	then
620	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
621	locat=options; exit
622	fi
623	block=_$cond1
624	[[ -n $cond2 ]] && block=${block}_$cond2
625	fi
626
627
628	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
629	if [[ $run_coupled_model = true ]]
630	then
631
632	if [[ -n $coupled_dist ]]
633	then
634
635	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
636	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
637
638	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
639	then
640
641	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
642	printf "\n PEs (total) : $numprocs"
643	printf "\n PEs (atmosphere): $numprocs_atmos"
644	printf "\n PEs (ocean) : $numprocs_ocean"
645	locat=coupling; exit
646
647	fi
648
649	else
650
651	(( numprocs_ocean = $numprocs / 2 ))
652	(( numprocs_atmos = $numprocs / 2 ))
653
654	fi
655	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
656
657	# GET coupled_mode FROM THE CONFIG FILE
658	line=""
659	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
660	while read line
661	do
662	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
663	then
664	coupled_mode="mpi2"
665	fi
666	done < tmp_mrun
667
668	fi
669
670
671	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
672	# ARCHIVIERUNG FEHLGESCHLAGEN IST
673	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
674	then
675	if [[ $ignore_archive_error = false ]]
676	then
677	printf "\n +++ data archiving of previous run failed"
678	printf "\n see directory \~/job_queue on remote machine"
679	locat=archive; exit
680	else
681	printf "\n +++ warning: data archiving in a previous run failed"
682	printf "\n MRUN continues, trying to get backup copy"
683	fi
684	fi
685
686
687	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
688	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
689	mrun_memory=$memory
690	mrun_group_number=$group_number
691	mrun_cpumax=$cpumax
692	mrun_numprocs=$numprocs
693
694
695	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
696	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
697	if [[ "$read_from_config" = false ]]
698	then
699
700	[[ $silent = false ]] && printf "\n Reading the configuration file... "
701	while read zeile
702	do
703	[[ $silent = false ]] && printf "."
704
705
706	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
707	# ERSETZEN
708	eval zeile=\"$zeile\"
709
710
711	# INTERPRETATION DER ZEILE
712	if [[ "$(echo $zeile)" = "" ]]
713	then
714	# LEERZEILE, KEINE AKTION
715	continue
716
717	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
718	then
719
720	# ZEILE IST KOMMENTARZEILE
721	true
722
723	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
724	then
725
726	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
727	zeile=$(echo $zeile \| cut -c2-)
728	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
729	var=`echo $zeile \| cut -d" " -f1`
730	value=`echo $zeile \| cut -d" " -s -f2`
731	for_host=`echo $zeile \| cut -d" " -s -f3`
732	for_cond1=`echo $zeile \| cut -d" " -s -f4`
733	for_cond2=`echo $zeile \| cut -d" " -s -f5`
734
735	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
736	then
737
738	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
739	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
740	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
741
742
743	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
744	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
745	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
746	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
747	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
748	# KONFIGURATIONSDATEI
749	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
750	then
751	eval $var=\$value
752
753	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
754	if [[ $do_trace = true ]]
755	then
756	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
757	fi
758	fi
759
760	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
761	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
762	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
763	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
764	if [[ $var = host ]]
765	then
766	if [[ -n $host && "$host" != $localhost ]]
767	then
768	do_batch=true
769	do_remote=true
770	case $host in
771	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
772	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
773	printf "\n is not available"
774	locat=nqs; exit;;
775	esac
776	else
777	host=$localhost
778	fi
779	fi
780
781	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
782	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
783	# DEN PROGRAMMEN BENOETIGT WERDEN
784	export $var
785	fi
786
787
788
789
790	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
791	then
792
793	# ZEILE DEFINIERT ERROR-KOMMANDO
794	(( iec = iec + 1 ))
795	zeile=$(echo $zeile \| cut -c4-)
796	err_command[$iec]="$zeile"
797
798	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
799	then
800
801	# ZEILE DEFINIERT INPUT-KOMMANDO
802	(( iic = iic + 1 ))
803	zeile=$(echo $zeile \| cut -c4-)
804	in_command[$iic]="$zeile"
805
806	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
807	then
808
809	# ZEILE DEFINIERT OUTPUT-KOMMANDO
810	(( ioc = ioc + 1 ))
811	zeile=$(echo $zeile \| cut -c4-)
812	out_command[$ioc]="$zeile"
813
814	else
815
816	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
817	# s2a: in/out - Feld
818	# s2b: loc - Feld (optional)
819	# s2c: tr/ar - Feld (optional)
820	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
821	s1=`echo $zeile \| cut -d" " -f1`
822	s2=`echo $zeile \| cut -d" " -s -f2`
823	s2a=$(echo $s2 \| cut -d":" -f1)
824	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
825	then
826	s2b=""
827	s2c=""
828	else
829	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
830	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
831	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
832	fi
833	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
834	s3=`echo $zeile \| cut -d" " -f3`
835	s4=`echo $zeile \| cut -d" " -s -f4`
836	s5=`echo $zeile \| cut -d" " -s -f5`
837	s6=`echo $zeile \| cut -d" " -s -f6`
838
839
840	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
841	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
842	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
843	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
844	# HANDEN SEIN MUSS (D.H. s2b = loc)
845	IFSALT="$IFS"; IFS="$IFS:"
846	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
847	then
848	found=false
849	for actual in $input_list
850	do
851	for formal in $s3
852	do
853	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
854	done
855	done
856	if [[ $found = true ]]
857	then
858	(( iin = iin + 1 ))
859	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
860	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
861	extin[$iin]=$s6
862	fi
863	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
864	then
865	found=false
866	for actual in $output_list
867	do
868	for formal in $s3
869	do
870	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
871	done
872	done
873	if [[ $found = true ]]
874	then
875	(( iout = iout + 1 ))
876	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
877	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
878	fi
879	elif [[ "$s2a" != in && "$s2a" != out ]]
880	then
881	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
882	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
883	locat=connect; exit
884	fi
885	IFS="$IFSALT"
886	fi
887	done < $config_file
888
889	else
890
891
892	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
893	[[ $silent = false ]] && printf "..."
894	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
895	export interpreted_config_file=.icf.$RANDOM
896
897
898
899	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
900	# VERFUEGUNG STELLEN
901	cat > .mrun_environment << %%END%%
902	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
903	config_file = '$config_file', do_remote = '$do_remote',
904	do_trace = '$do_trace', host = '$host',
905	input_list = '$input_list', icf = '$interpreted_config_file',
906	localhost = '$localhost', output_list = '$output_list' /
907
908	%%END%%
909
910	if [[ $localhost_realname = "sx-fep" ]]
911	then
912	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
913	else
914
915	if [[ "$host" != $localhost ]]
916	then
917
918	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
919	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
920	if [[ $? != 0 ]]
921	then
922	printf "\n\n +++ no interpret_config found"
923	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
924	locat=interpret_config; exit
925	fi
926	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
927	$interpret_config_executable
928
929	else
930
931	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
932	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
933	then
934	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
935	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
936	locat=interpret_config; exit
937	else
938	interpret_config${block}.x
939	fi
940
941	fi
942	fi
943	rm .mrun_environment
944
945
946	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
947	chmod u+x $interpreted_config_file
948	export PATH=$PATH:.
949	. $interpreted_config_file
950	rm $interpreted_config_file
951
952	fi
953
954
955	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
956	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
957	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
958	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
959	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
960	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
961	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
962
963
964	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
965	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
966	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
967	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
968	if [[ "$SOURCES_COMPLETE" = "" ]]
969	then
970
971	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
972	# VEREINBART WURDE
973	source_path=""
974	line=""
975	grep "%source_path" $config_file > tmp_mrun
976	while read line
977	do
978	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
979	then
980	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
981	then
982	global_source_path=`echo $line \| cut -d" " -f2`
983	fi
984	fi
985	done < tmp_mrun
986
987	line=""
988	found=false
989	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
990	while read line
991	do
992	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
993	then
994	if [[ $found = true ]]
995	then
996	printf "\n\n +++ more than one source path found in configuration file"
997	printf "\n for local host \"$localhost\" "
998	locat=source_path; exit
999	fi
1000	source_path=`echo $line \| cut -d" " -f2`
1001	found=true
1002	fi
1003	done < tmp_mrun
1004	rm tmp_mrun
1005
1006	if [[ "$source_path" = "" ]]
1007	then
1008	if [[ "$global_source_path" != "" ]]
1009	then
1010	source_path=$global_source_path
1011	else
1012	printf "\n\n +++ no source path found in configuration file"
1013	printf "\n for local host \"$localhost\" "
1014	locat=source_path; exit
1015	fi
1016	fi
1017	eval source_path=$source_path
1018
1019	if [[ ! -d $source_path ]]
1020	then
1021	printf "\n\n +++ source path \"$source_path\" on local host"
1022	printf "\n \"$localhost\" does not exist"
1023	locat=source_path; exit
1024	fi
1025
1026	fi
1027
1028
1029	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1030	# DURCH OPTION -G MITGETEILT)
1031	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1032	then
1033	global_revision=`svnversion $source_path 2>/dev/null`
1034	global_revision="Rev: $global_revision"
1035	fi
1036
1037
1038	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1039	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1040	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1041	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1042	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1043	if [[ -n $host && "$host" != $localhost ]]
1044	then
1045	do_batch=true
1046	do_remote=true
1047	case $host in
1048	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1049	(*) printf "\n"
1050	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1051	printf "\n is not available"
1052	locat=nqs; (( iec = 0 )); exit;;
1053	esac
1054	else
1055	host=$localhost
1056	fi
1057
1058
1059	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1060	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1061	then
1062
1063	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1064	if [[ ! -n $numprocs ]]
1065	then
1066	printf "\n"
1067	printf "\n +++ option \"-K parallel\" requires additional specification"
1068	printf "\n of the number of processors to be used by"
1069	printf "\n mrun-option \"-X\" or by environment-variable"
1070	printf "\n \"numprocs\" in the configuration file"
1071	locat=numprocs; (( iec = 0 )); exit
1072	fi
1073
1074	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1075	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1076	# GESAMTPROZESSORANZAHL IST
1077	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1078	then
1079	printf "\n"
1080	printf "\n +++ option \"-T\" (tasks per node) is missing"
1081	printf "\n set -T option or define tasks_per_node in the config file"
1082	locat=tasks_per_node; (( iec = 0 )); exit
1083	fi
1084
1085	if (( numprocs < tasks_per_node ))
1086	then
1087	printf "\n"
1088	printf "\n +++ tasks per node (-T) cannot exceed total number of processors (-X)"
1089	printf "\n given values: -T $tasks_per_node -X $numprocs"
1090	locat=tasks_per_node; (( iec = 0 )); exit
1091	fi
1092
1093	if [[ $host != lcflow && $host != lcxt5m ]]
1094	then
1095	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1096	(( ival = $tasks_per_node ))
1097	(( pes = numprocs ))
1098	(( ii = pes / ival ))
1099	(( remaining_pes = pes - ii * ival ))
1100	if (( remaining_pes > 0 ))
1101	then
1102	printf "\n"
1103	printf "\n +++ WARNING: tasks per node (option \"-T\") is not an integral"
1104	printf "\n divisor of the total number of processors (option \"-X\")"
1105	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1106	printf "\n One of the nodes is filled with $remaining_pes instead of $tasks_per_node tasks"
1107	(( nodes = nodes + 1 ))
1108	fi
1109	fi
1110
1111
1112	# IBMY HAT NUR EINEN KNOTEN
1113	if [[ $host = ibmy ]]
1114	then
1115	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1116	then
1117	printf "\n"
1118	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1119	printf "\n total number of processors (option \"-X\")"
1120	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1121	locat=tasks_per_node; (( iec = 0 )); exit
1122	fi
1123	fi
1124
1125
1126	# SETTINGS FOR SUBJOB-COMMAND
1127	OOPT="-O $threads_per_task"
1128
1129	# GESAMTZAHL DER KNOTEN BESTIMMEN
1130	if [[ "$tasks_per_node" != "" ]]
1131	then
1132	TOPT="-T $tasks_per_node"
1133	fi
1134
1135	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1136	# SETZEN
1137	if [[ $node_usage = default ]]
1138	then
1139	if [[ $host = ibms ]]
1140	then
1141	node_usage=shared
1142	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1143	then
1144	node_usage=singlejob
1145	else
1146	node_usage=not_shared
1147	fi
1148	fi
1149
1150	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1151	then
1152	printf "\n"
1153	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1154	printf "\n \"shared\" or \"not_shared\""
1155	locat=tasks_per_node; (( iec = 0 )); exit
1156	fi
1157
1158	fi
1159
1160	# PRUEFEN, OB HOSTFILE EXISTIERT
1161	if [[ -n $hostfile ]]
1162	then
1163	if [[ ! -f $hostfile ]]
1164	then
1165	printf "\n"
1166	printf "\n +++ hostfile \"$hostfile\" does not exist"
1167	locat=hostfile; exit
1168	fi
1169	fi
1170
1171	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1172	if [[ $host = ibmy && $do_remote = false ]]
1173	then
1174	if [[ ! -f $HOME/.rhosts ]]
1175	then
1176	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1177	printf "\n\n *** file:"
1178	printf "\n $HOME/.rhosts"
1179	printf "\n was created\n"
1180	fi
1181	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1182	then
1183	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1184	printf "\n\n *** file:"
1185	printf "\n $HOME/.rhosts"
1186	printf "\n was extended by the name of the current host\n"
1187	fi
1188	fi
1189
1190
1191	# Set default value for the maximum number of parallel io streams
1192	if [[ "$maximum_parallel_io_streams" = "" ]]
1193	then
1194	maximum_parallel_io_streams=$numprocs
1195	fi
1196
1197
1198	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1199	if [[ "$scp_port" != "" ]]
1200	then
1201	PORTOPT="-P $scp_port"
1202	SSH_PORTOPT="-p $scp_port"
1203	fi
1204
1205
1206	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1207	if [[ $queue = none ]]
1208	then
1209	case $host in
1210	(ibmh) queue=cluster;;
1211	(ibmkisti) queue=class.32plus;;
1212	(ibmy) queue=parallel;;
1213	(lckiaps) queue=normal;;
1214	(lckyoto) queue=ph;;
1215	(lckyuh) queue=fx-single;;
1216	(lckyut) queue=cx-single;;
1217	(lcsgib) queue=testq;;
1218	(lcsgih) queue=testq;;
1219	(lctit) queue=S;;
1220	(nech) queue=none;;
1221	(necriam) queue=SP;;
1222	(unics) queue=unics;;
1223	esac
1224	fi
1225
1226
1227	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1228	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1229	# ERMITTELN
1230	(( i = 0 ))
1231	while (( i < iin ))
1232	do
1233	(( i = i + 1 ))
1234	(( maxcycle = 0 ))
1235
1236	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1237	if [[ "${actionin[$i]}" = di ]]
1238	then
1239	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1240	# REM-MASCHINE AUSWERTEN
1241	eval filename=${pathin[$i]}/${endin[$i]}
1242	else
1243	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1244	# REM-MASCHINE AUSWERTEN
1245	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1246	fi
1247	eval pathname=${pathin[$i]}
1248
1249	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1250	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1251	then
1252	filename_input=$filename
1253	fi
1254
1255	# PRUEFEN AUF VORHANDENSEIN
1256	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1257	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1258	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1259	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1260	then
1261	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1262	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1263	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1264	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1265	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1266	if [[ "${transin[$i]}" != "locopt" ]]
1267	then
1268	printf "\n\n +++ INPUT-file: "
1269	if [[ "${extin[$i]}" = "" ]]
1270	then
1271	printf "\n $filename"
1272	else
1273	printf "\n $filename.${extin[$i]}"
1274	fi
1275	printf "\n does not exist\n"
1276	locat=input; exit
1277	else
1278	transin[$i]="unavailable"
1279	fi
1280	else
1281
1282	# ZYKLUSNUMMER FESTSTELLEN
1283	ls -1 -d $filename > filelist 2>/dev/null
1284	ls -1 -d $filename.* >> filelist 2>/dev/null
1285	while read zeile
1286	do
1287	cycle=$(echo $zeile \| cut -f2 -d".")
1288	if [[ "$cycle" = "$zeile" ]]
1289	then
1290	(( icycle = 0 ))
1291	elif [[ "$cycle" = "${extin[$i]}" ]]
1292	then
1293	(( icycle = 0 ))
1294	else
1295	(( icycle = $cycle ))
1296	fi
1297	if (( icycle > maxcycle ))
1298	then
1299	(( maxcycle = icycle ))
1300	file_to_be_used=$zeile
1301	fi
1302	done <filelist
1303	rm filelist
1304
1305	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1306	if (( maxcycle > 0 ))
1307	then
1308	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1309	then
1310	filename=${filename}.$maxcycle.${extin[$i]}
1311	else
1312	filename=${filename}.$maxcycle
1313	fi
1314	else
1315	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1316	then
1317	filename=${filename}.${extin[$i]}
1318	fi
1319	fi
1320
1321	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1322	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1323	absnamein[$i]=$filename
1324	if (( maxcycle > 0 ))
1325	then
1326	if [[ "${actionin[$i]}" = di ]]
1327	then
1328	frelin[$i]=${endin[$i]}.$maxcycle
1329	else
1330	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1331	fi
1332	else
1333	if [[ "${actionin[$i]}" = di ]]
1334	then
1335	frelin[$i]=${endin[$i]}
1336	else
1337	frelin[$i]=${afname}${endin[$i]}
1338	fi
1339	fi
1340
1341	fi
1342	done
1343
1344	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1345	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1346	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1347	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1348	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1349	(( i = 0 ))
1350	while (( i < iout ))
1351	do
1352	(( i = i + 1 ))
1353	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1354	then
1355	if [[ "${actionout[$i]}" = tr ]]
1356	then
1357	actionout[$i]=""
1358	elif [[ "${actionout[$i]}" = trpe ]]
1359	then
1360	actionout[$i]=pe
1361	elif [[ "${actionout[$i]}" = tra ]]
1362	then
1363	actionout[$i]=a
1364	fi
1365	(( maxcycle = 0 ))
1366	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1367	eval catalogname=${pathout[$i]}
1368	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1369	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1370	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1371	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1372	then
1373
1374	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1375	if cat /dev/null > $filename
1376	then
1377	rm $filename
1378	else
1379
1380	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1381	if [[ ! -d $catalogname ]]
1382	then
1383	if mkdir -p $catalogname
1384	then
1385	printf "\n\n *** directory:"
1386	printf "\n $catalogname"
1387	printf "\n was created\n"
1388	else
1389	printf "\n\n +++ OUTPUT-file:"
1390	printf "\n $filename"
1391	printf "\n cannot be created, because directory does not exist"
1392	printf "\n and cannot be created either"
1393	printf "\n"
1394	locat=output ; exit
1395	fi 2>/dev/null
1396	else
1397	printf "\n\n +++ OUTPUT-file:"
1398	printf "\n $filename"
1399	printf "\n cannot be created, although directory exists"
1400	printf "\n"
1401	locat=output ; exit
1402	fi
1403	fi 2>/dev/null
1404	else
1405
1406	# ZYKLUSNUMMER FESTSTELLEN
1407	ls -1 -d $filename > filelist 2>/dev/null
1408	ls -1 -d $filename.* >> filelist 2>/dev/null
1409	while read zeile
1410	do
1411	cycle=$(echo $zeile \| cut -f2 -d".")
1412	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1413	then
1414	(( icycle = 1 ))
1415	else
1416	(( icycle = $cycle + 1 ))
1417	fi
1418	if (( icycle > maxcycle ))
1419	then
1420	(( maxcycle = icycle ))
1421	fi
1422	done <filelist
1423	rm filelist
1424	fi
1425
1426	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1427	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1428	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1429	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1430	if [[ "${actionout[$i]}" != a ]]
1431	then
1432	if (( maxcycle > 0 ))
1433	then
1434	filename=${filename}.$maxcycle
1435	if cat /dev/null > $filename
1436	then
1437	rm $filename
1438	else
1439	printf "\n +++ OUTPUT-file:"
1440	printf "\n $filename"
1441	printf "\n cannot be created"
1442	locat=output ; exit
1443	fi
1444	fi
1445	else
1446	(( maxcycle = maxcycle - 1 ))
1447	if (( maxcycle > 0 ))
1448	then
1449	filename=${filename}.$maxcycle
1450	fi
1451	fi
1452
1453	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1454	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1455	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1456	pathout[$i]=$filename
1457	if (( maxcycle > 0 ))
1458	then
1459	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1460	else
1461	frelout[$i]=${fname}${endout[$i]}
1462	fi
1463
1464	fi
1465	done
1466
1467
1468	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1469	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1470	then
1471	if [[ "$dvr_inc" = "" ]]
1472	then
1473	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1474	printf "\n This is required for the dvrp_graphics package.\n"
1475	locat=dvr; exit
1476	fi
1477	if [[ "$dvr_lib" = "" ]]
1478	then
1479	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1480	printf "\n This is required for the dvrp_graphics package.\n"
1481	locat=dvr; exit
1482	fi
1483	fi
1484
1485
1486	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1487	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1488	# UEBERSETZT ZU WERDEN)
1489	if [[ "$mainprog" = "" && "$executable" = "" ]]
1490	then
1491	printf "\n +++ neither main program nor executable defined"
1492	locat=source; exit
1493	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1494	then
1495	printf "\n +++ main program as well as executable defined"
1496	locat=source; exit
1497	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1498	then
1499	do_compile=false
1500	fi
1501
1502
1503	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1504	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1505	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1506	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1507	then
1508	rm -rf SOURCES_FOR_RUN_$fname
1509	mkdir SOURCES_FOR_RUN_$fname
1510	fi
1511
1512
1513	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1514	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1515	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1516	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1517	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1518	then
1519
1520	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1521
1522	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1523	then
1524
1525	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1526	source_list=""
1527	cd $source_path
1528
1529
1530	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1531	if [[ ! -d .svn ]]
1532	then
1533	printf "\n\n +++ source directory"
1534	printf "\n \"$source_path\" "
1535	printf "\n is not under control of \"subversion\"."
1536	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1537	fi
1538
1539
1540	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1541	Filenames=""
1542	svn status > tmp_mrun
1543	while read line
1544	do
1545	firstc=`echo $line \| cut -c1`
1546	if [[ $firstc = M \|\| $firstc = "?" ]]
1547	then
1548	Name=`echo "$line" \| cut -c8-`
1549	extension=`echo $Name \| cut -d. -f2`
1550	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1551	then
1552	Filenames="$Filenames "$Name
1553	fi
1554	fi
1555	done < tmp_mrun
1556
1557
1558	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1559	for dateiname in $Filenames
1560	do
1561	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1562	source_list=$source_list"$dateiname "
1563	done
1564
1565	cd - > /dev/null
1566
1567
1568	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1569	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1570	# VORHANDEN
1571	elif [[ "$source_list" != "" && $restart_run != true ]]
1572	then
1573
1574	cd $source_path
1575
1576	for filename in $source_list
1577	do
1578
1579	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1580	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1581	then
1582	printf "\n +++ source code file: $filename"
1583	printf "\n must not contain (\"/\") "
1584	locat=source; exit
1585	fi
1586
1587	if [[ ! -f $filename ]]
1588	then
1589	printf "\n +++ source code file: $filename"
1590	printf "\n does not exist"
1591	locat=source; exit
1592	else
1593	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1594	fi
1595
1596	done
1597
1598	cd - > /dev/null
1599
1600	fi
1601
1602
1603	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1604	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1605	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1606	if [[ $restart_run != true ]]
1607	then
1608
1609	if [[ ! -f "$source_path/$mainprog" ]]
1610	then
1611	printf "\n\n +++ main program: $mainprog"
1612	printf "\n does not exist in source directory"
1613	printf "\n \"$source_path\"\n"
1614	locat=source; exit
1615	else
1616	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1617	then
1618	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1619	source_list=${mainprog}" $source_list"
1620	fi
1621	fi
1622	fi
1623
1624
1625	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1626	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1627	if [[ "$restart_run" != true ]]
1628	then
1629	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1630	if [[ ! -f $makefile ]]
1631	then
1632	printf "\n +++ file \"$makefile\" does not exist"
1633	locat=make; exit
1634	else
1635	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1636	fi
1637	fi
1638
1639
1640	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1641	if [[ $restart_run != true && "$add_source_path" != "" ]]
1642	then
1643
1644	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1645	if [[ ! -d $add_source_path ]]
1646	then
1647	printf "\n\n +++ WARNING: additional source code directory"
1648	printf "\n \"$add_source_path\" "
1649	printf "\n does not exist or is not a directory."
1650	printf "\n No source code will be used from this directory!\n"
1651	add_source_path=""
1652	if [[ $silent == false ]]
1653	then
1654	sleep 3
1655	fi
1656	else
1657
1658	cd $add_source_path
1659	found=false
1660
1661	Names=$(ls -1 *.f90 2>&1)
1662	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1663	Names=$(ls -1 *.F90 2>&1)
1664	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1665	Names=$(ls -1 *.F 2>&1)
1666	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1667	Names=$(ls -1 *.f 2>&1)
1668	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1669	Names=$(ls -1 *.c 2>&1)
1670	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1671
1672	cd - > /dev/null
1673	cd SOURCES_FOR_RUN_$fname
1674
1675	# COPY MAKEFILE IF EXISTING
1676	if [[ -f $add_source_path/Makefile ]]
1677	then
1678	printf "\n\n *** user Makefile from directory"
1679	printf "\n \"$add_source_path\" is used \n"
1680	if [[ $silent == false ]]
1681	then
1682	sleep 1
1683	fi
1684	cp $add_source_path/Makefile .
1685	fi
1686
1687	for dateiname in $AddFilenames
1688	do
1689	if [[ -f $dateiname ]]
1690	then
1691	printf "\n +++ source code file \"$dateiname\" found in additional"
1692	printf "\n source code directory \"$add_source_path\" "
1693	printf "\n but was also given with option \"-s\" which means that it should be taken"
1694	printf "\n from directory \"$source_path\"."
1695	locat=source; exit
1696	fi
1697
1698	cp $add_source_path/$dateiname .
1699	source_list="$source_list $dateiname"
1700
1701	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1702	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1703	then
1704	printf "\n\n +++ user file \"$dateiname\" "
1705	printf "\n is not listed in Makefile \n"
1706	locat=source; exit
1707	else
1708
1709	# Default User-Interface von der Liste entfernen, falls Datei
1710	# ein User-Interface enthaelt
1711	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1712	# then
1713	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1714	# then
1715	# rm -rf user_interface.f90
1716	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1717	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1718	# printf "\n since a user-interface is found in file"
1719	# printf "\n \"$add_source_path/$dateiname\" \n"
1720	# sleep 3
1721	# else
1722	if [[ $found = false ]]
1723	then
1724	found=true
1725	printf "\n\n *** following user file(s) added to the"
1726	printf " files to be translated:\n "
1727	fi
1728	printf "$dateiname "
1729	if [[ $silent == false ]]
1730	then
1731	sleep 0.5
1732	fi
1733
1734	fi
1735	done
1736	[[ $found = true ]] && printf "\n"
1737	cd - > /dev/null
1738	fi
1739	fi
1740
1741
1742	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1743	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1744	if [[ $restart_run != true && -n $package_list ]]
1745	then
1746
1747	cd $source_path
1748
1749	for package in $package_list
1750	do
1751
1752	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1753
1754	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1755	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1756	# LIEFERT
1757	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1758
1759
1760	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1761	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1762	for source_list_name in $package_source_list
1763	do
1764	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1765	then
1766
1767	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1768	ending=`echo $source_list_name \| cut -f2 -d.`
1769	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1770	then
1771	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1772	source_list="$source_list $source_list_name"
1773	fi
1774	fi
1775	done
1776	done
1777
1778	cd - > /dev/null
1779	fi
1780
1781
1782	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1783	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1784	# if [[ "$restart_run" != true ]]
1785	# then
1786	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1787	# if [[ ! -f $makefile ]]
1788	# then
1789	# printf "\n +++ file \"$makefile\" does not exist"
1790	# locat=make; exit
1791	# else
1792	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1793	# fi
1794	# fi
1795
1796	fi # do_compile=true
1797
1798
1799	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1800	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1801	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1802	then
1803
1804	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1805	# ZUSAMMENSETZEN
1806	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1807	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1808	then
1809	cpp_options="${cpp_options},-D__ibm=__ibm"
1810	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1811	then
1812	cpp_options="$cpp_options -D__nec"
1813	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1814	then
1815	cpp_options="$cpp_options -D__lc"
1816	else
1817	cpp_options="$cpp_options -D__$localhost"
1818	fi
1819
1820	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1821	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1822	then
1823	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1824	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1825	else
1826	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1827	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1828	fi
1829
1830	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1831	if [[ -n $package_list ]]
1832	then
1833	for package in $package_list
1834	do
1835	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1836	then
1837	if [[ $package != "dvrp_graphics+1PE" ]]
1838	then
1839	cpp_options="${cpp_options},-D__$package=__$package"
1840	else
1841	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1842	export use_seperate_pe_for_dvrp_output=true
1843	fi
1844	else
1845	if [[ $package != "dvrp_graphics+1PE" ]]
1846	then
1847	cpp_options="$cpp_options -D__$package"
1848	else
1849	cpp_options="$cpp_options -D__dvrp_graphics"
1850	export use_seperate_pe_for_dvrp_output=true
1851	fi
1852	fi
1853	done
1854	fi
1855
1856	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1857	if [[ -n $cpp_opts ]]
1858	then
1859	for popts in $cpp_opts
1860	do
1861	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1862	then
1863	cpp_options="${cpp_options},-D__$popts=__$popts"
1864	else
1865	cpp_options="$cpp_options -D__$popts"
1866	fi
1867	done
1868	fi
1869
1870	else
1871
1872
1873	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1874	if [[ $do_remote = false ]]
1875	then
1876	if [[ ! -f $executable ]]
1877	then
1878	printf "\n +++ executable file: $executable"
1879	printf "\n does not exist"
1880	locat=executable; exit
1881	fi
1882	fi
1883	fi
1884
1885
1886	# JOBMODUS FESTSTELLEN
1887	if [[ "$ENVIRONMENT" = BATCH ]]
1888	then
1889	jobmo=BATCH
1890	else
1891	jobmo=INTERACTIVE
1892	fi
1893
1894
1895	# no interactive runs on lctit
1896	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1897	then
1898	printf "\n +++ no interactive runs allowed on host \"$host\" "
1899	printf "\n please submit batch job using mrun option \"-b\" \n"
1900	locat=normal; exit
1901	fi
1902
1903
1904	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1905	# DURCH BENUTZER ANDERWEITIG VEREINBART
1906	if [[ "$compiler_name" = "" ]]
1907	then
1908
1909	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1910	locat=compiler_name; exit
1911
1912	fi
1913
1914
1915	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1916	[[ $localhost = necriam ]] && compiler_name=mpif90
1917
1918
1919
1920	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1921	kennung=$RANDOM
1922	if [[ "$tmp_user_catalog" = "" ]]
1923	then
1924	if [[ $localhost = ibmh ]]
1925	then
1926	tmp_user_catalog=$SCRATCH
1927	elif [[ $localhost = nech ]]
1928	then
1929	tmp_user_catalog=$WRKSHR
1930	else
1931	tmp_user_catalog=/tmp
1932	fi
1933	fi
1934	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1935
1936
1937	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1938	# BESTIMMEN
1939	if [[ "$tmp_data_catalog" = "" ]]
1940	then
1941	if [[ $localhost = nech ]]
1942	then
1943	tmp_data_catalog=$WRKSHR/mrun_restart_data
1944	else
1945	tmp_data_catalog=/tmp/mrun_restart_data
1946	fi
1947	fi
1948
1949
1950	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1951	# ERSETZEN
1952	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1953	then
1954	eval fopts=\"$fopts\"
1955	eval lopts=\"$lopts\"
1956	fi
1957
1958
1959
1960	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1961	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1962	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1963	ROPTS="$ropts"
1964	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1965	# then
1966	XOPT="-X $numprocs"
1967	# fi
1968
1969
1970
1971	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1972	# GRAMM BENOETIGT
1973	done=false
1974	while [[ $done = false ]]
1975	do
1976	cputime=$cpumax
1977	if (( $cputime == 0 ))
1978	then
1979	if [[ $do_batch = true ]]
1980	then
1981	printf "\n +++ cpu-time is undefined"
1982	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1983	printf "\n >>> "
1984	read cputime 1>/dev/null 2>&1
1985	else
1986	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1987	fi
1988	else
1989	done=true
1990	fi
1991	cpumax=$cputime
1992	done
1993
1994	(( minuten = cputime / 60 ))
1995	(( sekunden = cputime - minuten * 60 ))
1996
1997
1998	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1999	if [[ $do_batch = true ]]
2000	then
2001	done=false
2002	while [[ $done = false ]]
2003	do
2004	if (( memory == 0 ))
2005	then
2006	printf "\n +++ memory demand is undefined"
2007	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2008	printf "\n >>> "
2009	read memory 1>/dev/null 2>&1
2010	else
2011	done=true
2012	fi
2013	done
2014	fi
2015
2016
2017	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2018	if [[ $do_remote = true && -z $remote_username ]]
2019	then
2020	while [[ -z $remote_username ]]
2021	do
2022	printf "\n +++ username on remote host \"$host\" is undefined"
2023	printf "\n >>> Please type username:"
2024	printf "\n >>> "
2025	read remote_username
2026	done
2027	mc="$mc -u$remote_username"
2028	fi
2029
2030	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2031	if [[ "$login_init_cmd" != "" ]]
2032	then
2033	export init_cmds="${login_init_cmd};"
2034	fi
2035
2036
2037	# set module load command and export for subjob
2038	if [[ "$modules" != "" ]]
2039	then
2040	if [[ $host = lctit ]]
2041	then
2042	export module_calls=". $modules"
2043	else
2044	export module_calls="module load ${modules};"
2045	fi
2046	fi
2047
2048	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2049	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2050	then
2051	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2052	then
2053	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2054	fi
2055	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2056	# then
2057	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2058	# echo "*** module_calls = $module_calls"
2059	# fi
2060	fi
2061
2062
2063	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2064	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2065	then
2066	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2067	then
2068	mpilib=mpt
2069	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2070	then
2071	mpilib=mvapich
2072	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2073	then
2074	mpilib=impi
2075	fi
2076	fi
2077
2078
2079
2080	###########################################################################
2081	# HEADER-AUSGABE
2082	###########################################################################
2083
2084
2085	calltime=$(date)
2086	printf "\n"
2087	# [[ $silent = false ]] && clear
2088	printf "#------------------------------------------------------------------------# \n"
2089	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2090	printf "\| \| \n"
2091	spalte1="called on:"; spalte2=$localhost_realname
2092	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2093	if [[ $local_compile = false ]]
2094	then
2095	if [[ $do_remote = true ]]
2096	then
2097	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2098	else
2099	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2100	fi
2101	else
2102	spalte1="compiling test only!"; spalte2=""
2103	fi
2104	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2105	if [[ -n $numprocs ]]
2106	then
2107	if [[ $run_coupled_model = false ]]
2108	then
2109	spalte1="number of PEs:"; spalte2=$numprocs
2110	else
2111	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2112	fi
2113	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2114	fi
2115	if [[ -n $tasks_per_node ]]
2116	then
2117	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2119	if (( remaining_pes > 0 ))
2120	then
2121	spalte1=" "; spalte2="one of the nodes only filled with $remaining_pes tasks"
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	fi
2124	fi
2125	if [[ $maximum_parallel_io_streams != $numprocs ]]
2126	then
2127	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2128	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2129	fi
2130	if [[ $use_openmp = true ]]
2131	then
2132	spalte1="threads per task:"; spalte2="$threads_per_task"
2133	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2134	fi
2135	printf "\| \| \n"
2136	if [[ $do_compile = true ]]
2137	then
2138	if [[ "$mopts" != "" ]]
2139	then
2140	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2141	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2142	zeile=$(echo "$mopts" \| cut -c46-)
2143	while [[ "$zeile" != "" ]]
2144	do
2145	spalte1=""
2146	spalte2=$(echo "$zeile" \| cut -c-45)
2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2148	zeile=$(echo "$zeile" \| cut -c46-)
2149	done
2150	fi
2151
2152	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2153	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2154	zeile=$(echo "$cpp_options" \| cut -c46-)
2155	while [[ "$zeile" != "" ]]
2156	do
2157	spalte1=""
2158	spalte2=$(echo "$zeile" \| cut -c-45)
2159	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2160	zeile=$(echo "$zeile" \| cut -c46-)
2161	done
2162
2163	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2164	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2165	zeile=$(echo "$fopts" \| cut -c46-)
2166	while [[ "$zeile" != "" ]]
2167	do
2168	spalte1=""
2169	spalte2=$(echo "$zeile" \| cut -c-45)
2170	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2171	zeile=$(echo "$zeile" \| cut -c46-)
2172	done
2173
2174	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2175	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2176	zeile=$(echo "$lopts" \| cut -c46-)
2177	while [[ "$zeile" != "" ]]
2178	do
2179	spalte1=""
2180	spalte2=$(echo "$zeile" \| cut -c-45)
2181	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2182	zeile=$(echo "$zeile" \| cut -c46-)
2183	done
2184
2185	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2186	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2187	zeile=$(echo "$modules" \| cut -c46-)
2188	while [[ "$zeile" != "" ]]
2189	do
2190	spalte1=""
2191	spalte2=$(echo "$zeile" \| cut -c-45)
2192	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2193	zeile=$(echo "$zeile" \| cut -c46-)
2194	done
2195
2196	spalte1="main program:"; spalte2=$mainprog
2197	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2198	else
2199	spalte1=executable:; spalte2=$executable
2200	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2201	fi
2202	printf "\| \| \n"
2203	spalte1="base name of files:"; spalte2=$fname
2204	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2205	if [[ $fname != $afname ]]
2206	then
2207	spalte1="base name of input files:"; spalte2=$afname
2208	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2209	fi
2210	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2211	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2212	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2213	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2214
2215	if [[ "$ocean_file_appendix" = true ]]
2216	then
2217	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2218	fi
2219
2220	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2221	then
2222	spalte1="memory demand / PE":; spalte2="$memory MB"
2223	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2224	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2225	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2226	fi
2227
2228	if [[ $do_compile = true ]]
2229	then
2230	printf "\| \| \n"
2231	printf "\| Files to be compiled: \| \n"
2232	zeile=$source_list
2233	while [[ "$zeile" != "" ]]
2234	do
2235	linestart=$(echo $zeile \| cut -c-70)
2236	printf "\| %-70s \| \n" "$linestart"
2237	zeile=$(echo "$zeile" \| cut -c71-)
2238	done
2239	fi
2240	printf "#------------------------------------------------------------------------#"
2241
2242
2243
2244	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2245	if [[ $do_trace = true ]]
2246	then
2247	(( i = 0 ))
2248	while (( i < iin ))
2249	do
2250	(( i = i + 1 ))
2251	if (( i == 1 ))
2252	then
2253	printf "\n\n >>> INPUT-file assignments:\n"
2254	fi
2255	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2256	done
2257	(( i = 0 ))
2258	while (( i < iout ))
2259	do
2260	(( i = i + 1 ))
2261	if (( i == 1 ))
2262	then
2263	printf "\n\n >>> OUTPUT-file assignments:\n"
2264	fi
2265	printf "\n ${localout[$i]} : ${pathout[$i]}"
2266	done
2267	(( i = 0 ))
2268	while (( i < iic ))
2269	do
2270	(( i = i + 1 ))
2271	if (( i == 1 ))
2272	then
2273	printf "\n\n >>> INPUT-commands:\n"
2274	fi
2275	printf "\n ${in_command[$i]}"
2276	done
2277	(( i = 0 ))
2278	while (( i < ioc ))
2279	do
2280	(( i = i + 1 ))
2281	if (( i == 1 ))
2282	then
2283	printf "\n\n >>> OUTPUT-commands:\n"
2284	fi
2285	printf "\n ${out_command[$i]}"
2286	done
2287	fi
2288
2289
2290	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2291	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2292	then
2293	antwort=dummy
2294	printf "\n\n"
2295	printf " >>> everything o.k. (y/n) ? "
2296	while read antwort
2297	do
2298	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2299	then
2300	printf " >>> everything o.k. (y/n) ? "
2301	else
2302	break
2303	fi
2304	done
2305	if [[ $antwort = n \|\| $antwort = N ]]
2306	then
2307	locat=user_abort; (( iec = 0 )); exit
2308	fi
2309	if [[ $do_batch = true ]]
2310	then
2311	printf " >>> batch-job will be created and submitted"
2312	else
2313	if [[ $local_compile = false ]]
2314	then
2315	printf " >>> MRUN will now continue to execute on this machine"
2316	else
2317	printf " >>> a test compilation will now be carried out on this machine"
2318	fi
2319	fi
2320	fi
2321
2322
2323	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2324	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2325	check_depository="${working_directory}/trunk/UTIL"
2326	check_sources="${working_directory}/tmp_check_namelist_files"
2327	skip_check=false
2328
2329	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2330	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2331	then
2332	skip_check=true
2333	reason="run on remote host or parameter file check has not been compiled."
2334	fi
2335	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2336	then
2337	skip_check=true
2338	reason="parameter file check has not been compiled."
2339	fi
2340
2341	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2342	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2343	then
2344	skip_check=true
2345	reason="serial run."
2346	fi
2347
2348	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2349	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2350	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2351	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2352	if [[ $check_namelist_files == false ]]
2353	then
2354	skip_check=true
2355	reason="-z option set."
2356	fi
2357
2358	if [[ $fromhost != $localhost ]]
2359	then
2360	skip_check=true
2361	reason="submitting host is local host."
2362	fi
2363
2364	if [[ $run_coupled_model == true ]]
2365	then
2366	skip_check=true
2367	reason="coupled run."
2368	fi
2369
2370	if [[ $restart_run == true ]]
2371	then
2372	skip_check=true
2373	reason="restart run."
2374	fi
2375
2376	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2377	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2378	last_char=`echo $filename_input \| cut -c $last_char_int`
2379	if [[ "$last_char" == "f" ]]
2380	then
2381	skip_check=true
2382	reason="restart run."
2383	fi
2384
2385	if [[ $skip_check == false ]]
2386	then
2387	tmp_check=${working_directory}/tmp_check
2388
2389	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2390	# NOT NECESSARILY REQUIRED
2391	line=""
2392	found=false
2393	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2394	while read line1
2395	do
2396	line="$line1"
2397	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2398	then
2399	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2400	found=true
2401	fi
2402	done < $tmp_check
2403
2404	if [[ $found = false ]]
2405	then
2406	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2407	fi
2408
2409	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2410	# NOT NECESSARILY REQUIRED
2411	line=""
2412	found=false
2413	grep "NUDGING_DATA" $config_file > $tmp_check
2414	while read line1
2415	do
2416	line="$line1"
2417	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2418	then
2419	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2420	found=true
2421	fi
2422	done < $tmp_check
2423
2424	if [[ $found = false ]]
2425	then
2426	printf "\n +++ no NUDGING list entry found in the configuration file."
2427	fi
2428
2429	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2430	# NOT NECESSARILY REQUIRED
2431	line=""
2432	found=false
2433	grep "LSF_DATA" $config_file > $tmp_check
2434	while read line1
2435	do
2436	line="$line1"
2437	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2438	then
2439	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2440	found=true
2441	fi
2442	done < $tmp_check
2443
2444	if [[ $found = false ]]
2445	then
2446	printf "\n +++ no LSF list entry found in the configuration file."
2447	fi
2448
2449	rm -rf ${working_directory}/tmp_check
2450
2451	# CHECK IF THE P3DF FILE MUST BE CHECKED
2452	for item in $input_list
2453	do
2454	if [[ "$item" == "restart" ]]
2455	then
2456	check_restart=1
2457	else
2458	check_restart=0
2459	fi
2460	done
2461
2462	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2463	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2464	then
2465	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2466	locat=check_namelist; exit
2467	fi
2468
2469	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2470	if [[ $check_restart == 1 ]]
2471	then
2472
2473	filenamef="${filename_input}f"
2474	if [[ ! -f $filenamef ]]
2475	then
2476	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2477	check_restart=0
2478	answer=dummy
2479	printf "\n\n"
2480
2481	if [[ $silent == false ]]
2482	then
2483	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2484	do
2485	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2486	read answer
2487	done
2488	if [[ $answer = a \|\| $answer = A ]]
2489	then
2490	printf "\n +++ Aborting...."
2491	locat=normal; exit
2492	fi
2493	fi
2494	else
2495	check_restart=1
2496	fi
2497	fi
2498
2499	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2500	mkdir $check_sources
2501	cd $check_sources
2502
2503
2504	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2505	if [[ -d $add_source_path ]]
2506	then
2507	printf "\n\n *** copying files from $check_depository"
2508	cp $check_depository/check_namelist_files.tar ./
2509
2510	printf "\n\n *** untar of makefile and source files in $check_sources"
2511	tar -xf check_namelist_files.tar > /dev/null 2>&1
2512
2513	printf "\n\n *** adding user code."
2514	cp $add_source_path/* ./
2515	touch check_namelist_files.f90
2516
2517	# GET COMPILER OPTIONS AND PERFORM MAKE
2518	printf "\n\n *** compiling code if necessary...\n"
2519
2520	# workaround for batch jobs on local machine (lcxe6)
2521	if [[ $do_batch == true && $do_remote == false ]]
2522	then
2523	eval $init_cmds
2524	fi
2525
2526	# GET CHECK OPTIONS
2527	line=""
2528	found=false
2529
2530	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2531
2532	while read line1
2533	do
2534
2535	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2536	then
2537	line="$line1"
2538	fi
2539
2540	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2541	then
2542	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2543	line="$line "
2544	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2545	found=true
2546	fi
2547
2548	done < $tmp_check
2549	copts_check="$copts_check -D__check -D__parallel"
2550
2551	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2552
2553	# GET MAKE OUTPUT
2554	if [[ $? != 0 ]]
2555	then
2556	printf "\n +++ error during make."
2557	answer=dummy
2558	printf "\n\n"
2559	if [[ $silent == false ]]
2560	then
2561	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2562	do
2563	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2564	read answer
2565	done
2566	if [[ $answer = a \|\| $answer = A ]]
2567	then
2568	printf "\n +++ Aborting..."
2569	rm -rf $check_sources
2570	locat=normal; exit
2571	else
2572	skip_check=true
2573	fi
2574	else
2575	skip_check=true
2576	fi
2577	fi
2578	else
2579	cp $PALM_BIN/check_namelist_files.x ./
2580	fi
2581
2582	cp $filename_input ./PARIN
2583	if [[ $check_restart == 1 ]]
2584	then
2585	cp $filenamef ./PARINF
2586	fi
2587
2588	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2589	then
2590	printf "\n *** adding topography data"
2591	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2592
2593	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2594	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2595	# WHICH REQUIRE SUFFICIENT MEMORY
2596	ulimit -s unlimited
2597	fi
2598
2599	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2600	then
2601	printf "\n *** adding nudging data"
2602	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2603	fi
2604
2605	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2606	then
2607	printf "\n *** adding large scale forcing data"
2608	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2609	fi
2610
2611	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2612	cat > ENVPAR << %%END%%
2613	&envpar run_identifier = '$fname', host = '$host',
2614	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2615	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2616	maximum_cpu_time_allowed = ${cpumax}.,
2617	revision = '$global_revision',
2618	local_dvrserver_running = $local_dvrserver_running /
2619
2620	%%END%%
2621
2622	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2623	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2624	then
2625	printf "\n +++ WARNING: check_namelist_files.x not found."
2626	answer=dummy
2627	printf "\n\n"
2628
2629	if [[ $silent == false ]]
2630	then
2631	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2632	do
2633	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2634	read answer
2635	done
2636	if [[ $answer = a \|\| $answer = A ]]
2637	then
2638	printf "\n +++ Aborting..."
2639	rm -rf $check_sources
2640	locat=normal; exit
2641	else
2642	printf "\n *** skipping parameter file check."
2643	fi
2644	fi
2645
2646	elif [[ $skip_check == false ]]
2647	then
2648	# STARTING THE PARAMETER FILE CHECK
2649	printf "\n\n *** starting parameter file check..."
2650
2651	# CHECKING THE P3D FILE
2652	printf "\n\n (1) checking $filename_input"
2653	echo "$numprocs 0 0" > VARIN
2654	errors=`./check_namelist_files.x < VARIN 2>&1`
2655
2656	check_error=false
2657	if [[ "$errors" == "" ]]
2658	then
2659	printf " --> o.k."
2660	else
2661	printf " --> failed."
2662	check_error=true
2663	printf "\n\n $errors"
2664	fi
2665
2666	# CHECKING THE PD3F FILE IF NECESSARY
2667	if [[ $check_restart == 1 && $check_error == false ]]
2668	then
2669	printf "\n\n (2) checking $filenamef"
2670
2671	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2672	# IN &INIPAR LIST
2673	found=false
2674	cat PARINF \| while read line
2675	do
2676	line=$(echo $line\|sed 's/ //g')
2677	if [[ $line == "&inipar" ]]
2678	then
2679	start_search=true
2680	fi
2681
2682	if [[ $start_search == true ]]
2683	then
2684	if [[ $line == "initializing_actions='read_restart_data'" ]]
2685	then
2686	found=true
2687	break
2688	fi
2689	fi
2690
2691	if [[ $line == "/" ]]
2692	then
2693	start_search=false
2694	fi
2695
2696	done
2697
2698	if [[ $found = false ]]
2699	then
2700	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2701	printf "\n in &inipar list in $fname$p3df_suffix."
2702	rm -rf $check_sources
2703	locat=check_namelist; exit
2704	fi
2705
2706	# READ max_user_pr FROM FILES
2707	if [[ -f parin_for_check ]]
2708	then
2709	read max_pr_user < parin_for_check
2710	else
2711	max_user_pr=0
2712	fi
2713
2714	echo "$numprocs 1 $max_pr_user" > VARIN
2715	errors=`./check_namelist_files.x < VARIN 2>&1`
2716
2717	if [[ "$errors" == "" ]]
2718	then
2719	printf " --> o.k."
2720	else
2721	printf " --> failed."
2722	check_error=true
2723	printf "\n\n $errors"
2724	fi
2725	fi
2726
2727	# REPORT ERRORS AND CONTINUE/EXIT
2728	if [[ $check_error == true ]]
2729	then
2730	printf "\n +++ errors found in the parameter file!\n"
2731	answer=dummy
2732	printf "\n\n"
2733
2734	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2735	do
2736	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2737	read answer
2738	done
2739
2740	if [[ $answer = a \|\| $answer = A ]]
2741	then
2742	printf "\n +++ Aborting..."
2743	rm -rf $check_sources
2744	locat=normal; exit
2745	fi
2746	else
2747	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2748	fi
2749	rm -rf $check_sources
2750	fi
2751	else
2752	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2753	fi
2754
2755	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2756	rm -rf $check_sources
2757	cd $working_directory
2758
2759
2760	# DETERMINE PATH FOR MAKE DEPOSITORY
2761	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2762	then
2763
2764	line=""
2765	grep "%depository_path" $config_file > tmp_mrun
2766	while read line
2767	do
2768	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2769	then
2770	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2771	then
2772	global_depository_path=`echo $line \| cut -d" " -s -f2`
2773	fi
2774	fi
2775	done < tmp_mrun
2776
2777	line=""
2778	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2779	while read line
2780	do
2781	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2782	then
2783	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2784	then
2785	local_depository_path=`echo $line \| cut -d" " -s -f2`
2786	fi
2787	fi
2788	done < tmp_mrun
2789
2790	if [[ "$local_depository_path" = "" ]]
2791	then
2792	if [[ "$global_depository_path" != "" ]]
2793	then
2794	local_depository_path=$global_depository_path
2795	else
2796	printf "\n\n +++ no depository path found in configuration file"
2797	printf "\n for local host \"$localhost\" "
2798	printf "\n please set \"\%depository_path\" in configuration file\n"
2799	locat=config_file; exit
2800	fi
2801	fi
2802	eval local_depository_path=$local_depository_path
2803	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2804	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2805
2806
2807	basename=`echo $mainprog \| cut -f1 -d"."`
2808	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2809	if [[ ! -f $make_depository ]]
2810	then
2811	printf "\n"
2812	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2813	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2814	fi
2815
2816	fi
2817
2818
2819	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2820	# CHENDE AKTIONEN DURCHGEFUEHRT
2821	if [[ $do_batch = false ]]
2822	then
2823
2824
2825	# TEMPORAEREN KATALOG ERZEUGEN
2826	mkdir -p $TEMPDIR
2827	chmod go+rx $TEMPDIR
2828	tmpcreate=true
2829
2830
2831	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2832	# TEMPORAERES VERZEICHNIS KOPIEREN
2833	if [[ $do_compile = true ]]
2834	then
2835
2836	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2837	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2838	if [[ $localhost = nech ]]
2839	then
2840	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2841	if mkdir -p $TEMPDIR_COMPILE
2842	then
2843	printf "\n *** \"$TEMPDIR_COMPILE\" "
2844	printf "\n is generated as temporary directory for cross compiling\n"
2845	else
2846	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2847	printf "\n needed for cross compilation failed"
2848	locat=compile
2849	exit
2850	fi
2851	else
2852	TEMPDIR_COMPILE=$TEMPDIR
2853	fi
2854
2855	cp $make_depository $TEMPDIR_COMPILE
2856	cd $TEMPDIR_COMPILE
2857	tar -xf $make_depository > /dev/null 2>&1
2858	cd - > /dev/null
2859
2860	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2861	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2862	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2863
2864	else
2865
2866	cp $executable ${TEMPDIR}/a.out
2867
2868	fi
2869
2870
2871	# WECHSEL IN TEMPORAEREN KATALOG
2872	cd $TEMPDIR
2873	printf "\n *** changed to temporary directory: $TEMPDIR"
2874
2875
2876	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2877	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2878	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2879	# ERMITTELN
2880	(( i = 0 ))
2881	while (( i < iout ))
2882	do
2883	(( i = i + 1 ))
2884	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2885	then
2886	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2887	else
2888	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2889	fi
2890	done
2891
2892
2893	# IF REQUIRED, START WITH COMPILING ACTIONS
2894	if [[ $do_compile = true ]]
2895	then
2896
2897
2898	if [[ -f a.out ]]
2899	then
2900
2901	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2902	printf "\n\n\n *** executable a.out found"
2903	printf "\n no compilation required \n"
2904
2905	else
2906
2907	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2908	printf "\n\n\n *** compilation starts \n$striche\n"
2909	printf " *** compilation with make using following options:\n"
2910	printf " make depository: $make_depository"
2911	if [[ "$mopts" != "" ]]
2912	then
2913	printf " make options: $mopts\n"
2914	fi
2915	printf " compilername: $compiler_name\n"
2916	printf " compiler options: $fopts\n"
2917	printf " preprocessor directives: $cpp_options \n"
2918	printf " linker options: $lopts \n"
2919	if [[ "$modules" != "" ]]
2920	then
2921	printf " modules to be load: $modules \n"
2922	fi
2923	printf " source code files: $source_list \n"
2924
2925	if [[ $localhost = nech ]]
2926	then
2927	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2928	cp $TEMPDIR_COMPILE/a.out .
2929	[[ $? != 0 ]] && compile_error=true
2930	rm -rf $TEMPDIR_COMPILE
2931	elif [[ $localhost = ibmh ]]
2932	then
2933	printf " compiler is called via ssh on \"plogin1\" \n"
2934	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2935	[[ ! -f a.out ]] && compile_error=true
2936	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2937	elif [[ $localhost = lcsgib ]]
2938	then
2939	printf " compiler is called via ssh on \"bicegate0\" \n"
2940	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2941	[[ ! -f a.out ]] && compile_error=true
2942	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2943	elif [[ $localhost = lcsgih ]]
2944	then
2945	printf " compiler is called via ssh on \"hicegate0\" \n"
2946	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2947	[[ ! -f a.out ]] && compile_error=true
2948	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2949	elif [[ $localhost = lcflow ]]
2950	then
2951	printf " compiler is called via ssh on \"flow\" \n"
2952	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2953	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
2954	[[ "$check_for_file" = "" ]] && compile_error=true
2955	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2956	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf \|\| $localhost = lccrayh ]]
2957	then
2958	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2959	else
2960	[[ "$init_cmds" != "" ]] && eval $init_cmds
2961	[[ "$module_calls" != "" ]] && eval $module_calls
2962	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2963	fi
2964
2965	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2966	then
2967	printf "\n +++ error occured while compiling or linking"
2968	locat=compile
2969
2970	exit
2971	else
2972	printf "$striche\n *** compilation finished \n"
2973	fi
2974
2975	fi
2976
2977	fi
2978
2979
2980	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2981	if [[ $local_compile = true ]]
2982	then
2983	cd $HOME
2984	rm -rf $TEMPDIR
2985	locat=local_compile; exit
2986	fi
2987
2988
2989	# BEREITSTELLEN DER INPUT-DATEIEN
2990	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2991	(( i = 0 ))
2992	while (( i < iin ))
2993	do
2994	(( i = i + 1 ))
2995	if (( i == 1 ))
2996	then
2997	printf "\n\n *** providing INPUT-files:\n$striche"
2998	fi
2999
3000
3001	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
3002	if [[ "${transin[$i]}" = unavailable ]]
3003	then
3004	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
3005	then
3006	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3007	printf "\n is not available!"
3008	else
3009	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3010	printf "\n is not available!"
3011	fi
3012	continue
3013	fi
3014
3015	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3016	files_for_pes=false; datentyp=file
3017	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3018	then
3019	files_for_pes=true; datentyp=directory
3020	actionin[$i]=""
3021	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3022	then
3023	actionin[$i]=""
3024	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3025	then
3026	files_for_pes=true; datentyp=directory
3027	actionin[$i]="ar"
3028	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3029	then
3030	actionin[$i]="ar"
3031	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3032	then
3033	files_for_pes=true; datentyp=directory
3034	actionin[$i]="fl"
3035	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3036	then
3037	actionin[$i]="fl"
3038	fi
3039
3040	if [[ $files_for_pes = true ]]
3041	then
3042	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3043	else
3044	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3045	fi
3046
3047	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3048	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3049	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3050	# SERVER ZU HOLEN
3051	if [[ "${actionin[$i]}" = fl ]]
3052	then
3053	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3054	if [[ $files_for_pes = false ]]
3055	then
3056	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3057	then
3058	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3059	got_tmp[$i]=true
3060	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3061	then
3062	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3063	printf "\n *** trying to use backup copy in \"$WORK\" "
3064	cp $WORK/${frelin[$i]} ${localin[$i]}
3065	else
3066	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3067	printf "\n or \"$tmp_data_catalog\" does not exist!"
3068	printf "\n *** trying to get copy from archive"
3069	actionin[$i]=ar
3070	fi
3071	else
3072	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3073	then
3074	mkdir ${localin[$i]}
3075	cd $tmp_data_catalog/${frelin[$i]}
3076	for file in $(ls *)
3077	do
3078	ln $file $TEMPDIR/${localin[$i]}
3079	done
3080	cd $TEMPDIR
3081	got_tmp[$i]=true
3082	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3083	then
3084	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3085	printf "\n *** trying to use backup copy in \"$WORK\" "
3086	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3087	else
3088	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3089	printf "\n or \"$tmp_data_catalog\" does not exist!"
3090	printf "\n *** trying to get copy from archive"
3091	actionin[$i]=ar
3092	fi
3093	fi
3094	fi
3095
3096
3097	# DATEI LIEGT AUF ARCHIV-SERVER
3098	if [[ "${actionin[$i]}" = ar ]]
3099	then
3100
3101	if [[ $files_for_pes = false ]]
3102	then
3103	printf "\n file will be restored from archive-system ($archive_system)!"
3104	else
3105	printf "\n directory will be restored from archive-system ($archive_system)!"
3106	fi
3107
3108	file_restored=false
3109
3110	if [[ $archive_system = asterix ]]
3111	then
3112	do_stagein=true
3113	(( stagein_anz = 0 ))
3114	while [[ $do_stagein = true ]]
3115	do
3116	if [[ $files_for_pes = false ]]
3117	then
3118	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3119	else
3120	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3121	fi
3122	cat STAGEIN_OUTPUT
3123	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3124	then
3125	file_restored=true
3126	do_stagein=false
3127	else
3128	(( stagein_anz = stagein_anz + 1 ))
3129	if (( stagein_anz == 10 ))
3130	then
3131	printf "\n +++ stagein stoped after 10 tries"
3132	locat=stage
3133	exit
3134	fi
3135	printf "\n +++ restoring from archive failed, trying again:"
3136	sleep 900
3137	fi
3138	done
3139	elif [[ $archive_system = DMF ]]
3140	then
3141	if [[ $files_for_pes = false ]]
3142	then
3143	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3144	locat=DMF
3145	exit
3146	else
3147	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3148	cp -r $ARCHIVE/${frelin[$i]} $PWD
3149	file_restored=true
3150	fi
3151	elif [[ $archive_system = tivoli ]]
3152	then
3153	if [[ $files_for_pes = false ]]
3154	then
3155	if [[ $localhost = lcsgih ]]
3156	then
3157	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3158	else
3159	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3160	fi
3161	else
3162	(( inode = 0 ))
3163	while (( inode < nodes ))
3164	do
3165	if [[ $localhost = lcsgih ]]
3166	then
3167	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3168	else
3169	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3170	fi
3171	(( inode = inode + 1 ))
3172	done
3173	fi
3174	file_restored=true
3175	elif [[ $archive_system = ut ]]
3176	then
3177	if [[ $files_for_pes = false ]]
3178	then
3179	cp $UT/${frelin[$i]} .
3180	else
3181	(( inode = 0 ))
3182	while (( inode < nodes ))
3183	do
3184	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3185	(( inode = inode + 1 ))
3186	done
3187	fi
3188	file_restored=true
3189	else
3190	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3191	locat=rearchive
3192	exit
3193	fi
3194
3195	if [[ $file_restored = true ]]
3196	then
3197
3198	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3199	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3200	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3201	if [[ $files_for_pes = false ]]
3202	then
3203	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3204	else
3205	mkdir $tmp_data_catalog/${frelin[$i]}
3206	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3207	fi
3208	got_tmp[$i]=true
3209
3210	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3211	mv ${frelin[$i]} ${localin[$i]}
3212
3213	fi
3214	fi
3215
3216
3217	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3218	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3219	then
3220
3221	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3222	then
3223
3224	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3225	printf "\n file will be provided for $numprocs processors"
3226	mkdir ${localin[$i]}
3227	ival=$numprocs
3228	(( ii = 0 ))
3229	while (( ii <= ival-1 ))
3230	do
3231	if (( ii < 10 ))
3232	then
3233	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3234	elif (( ii < 100 ))
3235	then
3236	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3237	elif (( ii < 1000 ))
3238	then
3239	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3240	else
3241	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3242	fi
3243	(( ii = ii + 1 ))
3244	done
3245
3246	else
3247
3248	if [[ $files_for_pes = true ]]
3249	then
3250
3251	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3252	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3253	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3254	# PER MOVE UMBENANNT WERDEN
3255	printf "\n providing $numprocs files for the respective processors"
3256	mkdir ${localin[$i]}
3257	if [[ $link_local_input = true ]]
3258	then
3259	printf " using ln -f\n"
3260	cd ${absnamein[$i]}
3261	for file in $(ls *)
3262	do
3263	ln -f $file ${localin[$i]}
3264	done
3265	cd $TEMPDIR
3266	fi
3267	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3268	if [[ ! -f "${localin[$i]}/_0000" ]]
3269	then
3270	if [[ $link_local_input = true ]]
3271	then
3272	printf " ln failed for .../_0000, using cp...\n"
3273	fi
3274	cp -r ${absnamein[$i]}/* ${localin[$i]}
3275	fi
3276
3277	else
3278	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3279	if [[ $link_local_input = true ]]
3280	then
3281	printf " using ln -f\n"
3282	ln -f ${absnamein[$i]} ${localin[$i]}
3283	fi
3284	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3285	if [[ ! -f "${localin[$i]}" ]]
3286	then
3287	if [[ $link_local_input = true ]]
3288	then
3289	printf " ln failed, using cp...\n"
3290	fi
3291	cp ${absnamein[$i]} ${localin[$i]}
3292	fi
3293	fi
3294	fi
3295	fi
3296
3297	done
3298	if (( i != 0 ))
3299	then
3300	printf "\n$striche\n *** all INPUT-files provided \n"
3301	fi
3302
3303
3304	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3305	(( i = 0 ))
3306	while (( i < iic ))
3307	do
3308	(( i = i + 1 ))
3309	if (( i == 1 ))
3310	then
3311	printf "\n\n *** execution of INPUT-commands:\n$striche"
3312	fi
3313	printf "\n >>> ${in_command[$i]}"
3314	eval ${in_command[$i]}
3315	if (( i == iic ))
3316	then
3317	printf "\n$striche\n"
3318	fi
3319	done
3320
3321
3322	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3323	cpurest=${cpumax}.
3324
3325
3326	# START DVR STREAMING SERVER
3327	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3328	then
3329	if [[ "$dvr_server" != "" ]]
3330	then
3331
3332	printf "\n\n *** preparing the dvr streaming server configuration file"
3333
3334	# Check, if a dvr server is already running
3335	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3336	if [[ "$running_dvrserver_id" != "" ]]
3337	then
3338
3339	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3340	printf "\n This server is used instead starting a new one!"
3341	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3342
3343	else
3344
3345	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3346	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3347	then
3348	cp ${PALM_BIN}/.dvrserver.config .
3349
3350	# Entering the BASEDIR, UID and GID into this file
3351	user_id=`id -u`
3352	group_id=`id -g`
3353	# & is needed as seperator, because TEMPDIR contains /
3354	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3355	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3356	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3357	mv .dvrserver.3 .dvrserver.config
3358	rm .dvrserver.1 .dvrserver.2
3359
3360	# Start dvr server in background, get his id and print on terminal
3361	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3362	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3363	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3364	local_dvrserver_running=.TRUE.
3365	else
3366	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3367	printf "\n \"$PALM_BIN\" "
3368	locat=dvr
3369	exit
3370	fi
3371
3372	fi
3373
3374	else
3375	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3376	fi
3377	fi
3378
3379
3380	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3381	# LESEN VON PALM)
3382	cat > ENVPAR << %%END%%
3383	&envpar run_identifier = '$fname', host = '$localhost',
3384	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3385	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3386	maximum_cpu_time_allowed = ${cpumax}.,
3387	revision = '$global_revision',
3388	local_dvrserver_running = $local_dvrserver_running /
3389
3390	%%END%%
3391
3392
3393	# PROGRAMMSTART
3394	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3395	PATH=$PATH:$TEMPDIR
3396
3397	# MPI debug option (argument checking, slows down execution due to increased latency)
3398	if [[ "$mpi_debug" = true ]]
3399	then
3400	export MPI_CHECK_ARGS=1
3401	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3402	fi
3403
3404	if [[ "$totalview" = true ]]
3405	then
3406	printf "\n *** totalview debugger will be used"
3407	tv_opt="-tv"
3408	else
3409	tv_opt=""
3410	fi
3411
3412	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3413	then
3414	if [[ "$ENVIRONMENT" = BATCH ]]
3415	then
3416	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3417	then
3418	printf "\n +++ debug is allowed in interactive mode only"
3419	locat=debug
3420	exit
3421	fi
3422	fi
3423	if [[ $localhost = ibmh ]]
3424	then
3425
3426	# SETUP THE IBM MPI ENVIRONMENT
3427	export MP_SHARED_MEMORY=yes
3428	export AIXTHREADS_SCOPE=S
3429	export OMP_NUM_THREADS=$threads_per_task
3430	export AUTHSTATE=files
3431	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3432
3433	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3434	export MP_ADAPTER_USE=shared
3435	export MP_CPU_USE=multiple
3436	export MP_TIMEOUT=1200
3437
3438	unset MP_TASK_AFFINITY
3439
3440	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3441	#(( ii = 1 ))
3442	#while (( ii <= $numprocs ))
3443	#do
3444	# echo $localhost_realname >> hostfile
3445	# (( ii = ii + 1 ))
3446	#done
3447	#export MP_HOSTFILE=hostfile
3448
3449	if [[ "$LOADLBATCH" = yes ]]
3450	then
3451	totalview poe a.out $ROPTS
3452	else
3453	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3454	export TVDSVRLAUNCHCMD=ssh
3455	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3456	fi
3457	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3458	then
3459	# CURRENTLY NO DEBUGGER ON LCSGI
3460	if [[ $run_coupled_model = true ]]
3461	then
3462	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3463	locat=debug
3464	exit
3465	else
3466	echo "no_coupling" > runfile_atmos
3467	fi
3468	(( ii = $numprocs / $threads_per_task ))
3469	export OMP_NUM_THREADS=$threads_per_task
3470	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3471	if [[ $threads_per_task != 1 ]]
3472	then
3473	printf "\n threads per task: $threads_per_task"
3474	fi
3475	printf "\n\n"
3476	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3477	then
3478	# export MPI_LAUNCH_TIMEOUT=360
3479	if [[ "$totalview" = true ]]
3480	then
3481	printf "\n running totalview debugger"
3482	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3483	else
3484	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3485	fi
3486	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3487	then
3488	# ulimit -s 300000 # A too large stack size causes problems
3489	# export MV2_NUM_PORTS=2
3490	# export MV2_CPU_MAPPING=0:1:2:3
3491	if [[ "$totalview" = true ]]
3492	then
3493	printf "\n running totalview debugger"
3494	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3495	else
3496	mpiexec ./a.out $ROPTS < runfile_atmos
3497	fi
3498	fi
3499	else
3500	printf "\n +++ no debug available on \"$localhost\" "
3501	printf "\n or not implemented in mrun so far"
3502	locat=debug
3503	exit
3504	fi
3505
3506	# end debug mode
3507	else
3508
3509	# normal execution
3510	if [[ -n $numprocs ]]
3511	then
3512	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3513	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3514	then
3515	# SETUP THE IBM MPI ENVIRONMENT
3516	if [[ $host != ibmh && $host != ibmkisti ]]
3517	then
3518	export MP_SHARED_MEMORY=yes
3519	export AIXTHREAD_SCOPE=S
3520	export OMP_NUM_THREADS=$threads_per_task
3521	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3522	export AUTHSTATE=files
3523	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3524	# export MP_PRINTENV=yes
3525
3526	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3527	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3528	export MP_WAIT_MODE=poll
3529	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3530	fi
3531
3532	if [[ $host = ibmkisti ]]
3533	then
3534	export LANG=en_US
3535	export MP_SHARED_MEMORY=yes
3536	if [[ $threads_per_task = 1 ]]
3537	then
3538	export MP_SINGLE_THREAD=yes
3539	export MEMORY_AFFINITY=MCM
3540	else
3541	export OMP_NUM_THREADS=$threads_per_task
3542	fi
3543	fi
3544
3545	if [[ "$LOADLBATCH" = yes ]]
3546	then
3547	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3548	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3549	then
3550	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3551	else
3552	if [[ $run_coupled_model = false ]]
3553	then
3554	if [[ "$ocean_file_appendix" = true ]]
3555	then
3556	echo "precursor_ocean" > runfile_atmos
3557	else
3558	echo "precursor_atmos" > runfile_atmos
3559	fi
3560	else
3561	(( iia = $numprocs_atmos / $threads_per_task ))
3562	(( iio = $numprocs_ocean / $threads_per_task ))
3563	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3564	printf "\n using $coupled_mode coupling"
3565	printf "\n\n"
3566	echo "coupled_run $iia $iio" > runfile_atmos
3567	fi
3568	poe ./a.out $ROPTS < runfile_atmos
3569	fi
3570	else
3571	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3572	then
3573	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3574	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3575	then
3576	if [[ -f $hostfile ]]
3577	then
3578	cp $hostfile hostfile
3579	else
3580	(( ii = 1 ))
3581	while (( ii <= $numprocs ))
3582	do
3583	echo $localhost_realname >> hostfile
3584	(( ii = ii + 1 ))
3585	done
3586	fi
3587	export MP_HOSTFILE=hostfile
3588	if [[ $run_coupled_model = false ]]
3589	then
3590	if [[ "$ocean_file_appendix" = true ]]
3591	then
3592	echo "precursor_ocean" > runfile_atmos
3593	else
3594	echo "precursor_atmos" > runfile_atmos
3595	fi
3596	else
3597	(( iia = $numprocs_atmos / $threads_per_task ))
3598	(( iio = $numprocs_ocean / $threads_per_task ))
3599	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3600	printf "\n using $coupled_mode coupling"
3601	printf "\n\n"
3602	echo "coupled_run $iia $iio" > runfile_atmos
3603	fi
3604	if [[ $localhost = ibmy ]]
3605	then
3606	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3607	else
3608	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3609	fi
3610
3611	else
3612	if [[ "$host_file" = "" ]]
3613	then
3614	printf "\n +++ no hostfile given in configuration file"
3615	locat=config_file
3616	exit
3617	else
3618	eval host_file=$host_file
3619	fi
3620	export MP_HOSTFILE=$host_file
3621	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3622	fi
3623	fi
3624	elif [[ $host = nech \|\| $host = necriam ]]
3625	then
3626	(( ii = nodes ))
3627	if [[ $ii = 1 ]]
3628	then
3629	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3630	export MPIPROGINF=YES
3631	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3632	echo "*** execution on single node with mpirun"
3633	mpirun -np $numprocs ./a.out $ROPTS
3634	else
3635	(( i = 0 ))
3636	while (( i < ii ))
3637	do
3638	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3639	(( i = i + 1 ))
3640	done
3641
3642	echo "#!/bin/sh" > mpi_exec_shell
3643	echo " " >> mpi_exec_shell
3644	echo "set -u" >> mpi_exec_shell
3645	echo "F_ERRCNT=0" >> mpi_exec_shell
3646	echo "MPIPROGINV=YES" >> mpi_exec_shell
3647	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3648	echo "cpurest=$cpurest" >> mpi_exec_shell
3649	echo "fname=$fname" >> mpi_exec_shell
3650	echo "localhost=$localhost" >> mpi_exec_shell
3651	echo "return_addres=$return_addres" >> mpi_exec_shell
3652	echo "return_username=$return_username" >> mpi_exec_shell
3653	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3654	echo "write_binary=$write_binary" >> mpi_exec_shell
3655	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3656	echo " " >> mpi_exec_shell
3657	echo "export F_ERRCNT" >> mpi_exec_shell
3658	echo "export MPIPROGINV" >> mpi_exec_shell
3659	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3660	echo "export cpurest" >> mpi_exec_shell
3661	echo "export fname" >> mpi_exec_shell
3662	echo "export localhost" >> mpi_exec_shell
3663	echo "export return_addres" >> mpi_exec_shell
3664	echo "export return_username" >> mpi_exec_shell
3665	echo "export tasks_per_node" >> mpi_exec_shell
3666	echo "export write_binary" >> mpi_exec_shell
3667	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3668	echo " " >> mpi_exec_shell
3669	echo "exec ./a.out" >> mpi_exec_shell
3670
3671	chmod u+x mpi_exec_shell
3672	export MPIPROGINF=YES
3673	mpirun -f multinode_config &
3674	wait
3675
3676	fi
3677	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3678	then
3679
3680	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3681	# DOES NOT EXIST
3682	if [[ $host != lccrayb &&$host != lccrayf && $host != lccrayh && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3683	then
3684	if [[ -f $hostfile ]]
3685	then
3686	cp $hostfile hostfile
3687	(( ii = $numprocs / $threads_per_task ))
3688	else
3689	(( ii = 1 ))
3690	while (( ii <= $numprocs / $threads_per_task ))
3691	do
3692	echo $localhost_realname >> hostfile
3693	(( ii = ii + 1 ))
3694	done
3695	fi
3696	eval zeile=\"`head -n $ii hostfile`\"
3697	printf "\n *** running on: $zeile"
3698	fi
3699
3700	(( ii = $numprocs / $threads_per_task ))
3701	export OMP_NUM_THREADS=$threads_per_task
3702	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3703	if [[ $threads_per_task != 1 ]]
3704	then
3705	# increase stack size to unlimited, because large runs
3706	# may abort otherwise
3707	ulimit -Ss unlimited
3708	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3709	fi
3710	if [[ $run_coupled_model = false ]]
3711	then
3712	if [[ "$ocean_file_appendix" = true ]]
3713	then
3714	echo "precursor_ocean" > runfile_atmos
3715	else
3716	echo "precursor_atmos" > runfile_atmos
3717	fi
3718	printf "\n\n"
3719	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3720	then
3721	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3722	then
3723	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3724	# export MPI_DSM_DISTRIBUTE=1
3725	# MPI_DSM_CPULIST: pin MPI processes to cores
3726	if [[ $use_openmp = false ]]
3727	then
3728	if [[ "$sgi_feature" = ice2 ]]
3729	then
3730	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3731	else
3732	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3733	fi
3734	else
3735	unset MPI_DSM_CPULIST
3736	fi
3737	# MPI_IB_RAILS: use both IB rails on ICE2
3738	export MPI_BUFS_PER_HOST=512
3739	export MPI_IB_RAILS=2
3740	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3741	export MPI_CONNECTIONS_THRESHOLD=8192
3742	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3743	export MPI_TYPE_DEPTH=20
3744	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3745	export MPI_GROUP_MAX=64
3746	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3747	if [[ $use_openmp = true ]]
3748	then
3749	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3750	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3751	else
3752	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3753	fi
3754
3755	# next is test for openmp usage
3756	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3757	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3758	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3759	then
3760	export MV2_NUM_PORTS=2
3761	# The default setting of MV2_CPU_MAPPING gives best results
3762	# export MV2_ENABLE_AFFINITY=1
3763	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3764	# if [[ "$sgi_feature" = ice2 ]]
3765	# then
3766	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3767	# else
3768	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3769	# fi
3770	if [[ $use_openmp = true ]]
3771	then
3772	unset MV2_CPU_MAPPING
3773	export MV2_ENABLE_AFFINITY=0
3774	fi
3775	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3776	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3777	if [[ $use_openmp = true ]]
3778	then
3779	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3780	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3781	else
3782	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3783	fi
3784	elif [[ "$mpilib" = impi ]]
3785	then
3786	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3787	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3788	fi
3789	elif [[ $host = lccrayb \|\| $host = lccrayh ]]
3790	then
3791	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3792	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3793	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3794	elif [[ $host = lccrayf ]]
3795	then
3796	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3797	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3798	then
3799	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3800	elif [[ $host = lcflow ]]
3801	then
3802	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3803	elif [[ $host = lcsb ]]
3804	then
3805	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3806	elif [[ $host = lckiaps ]]
3807	then
3808	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3809	elif [[ $host = lckyu* ]]
3810	then
3811	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3812	else
3813	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3814	fi
3815	else
3816
3817	# currently there is no full MPI-2 support on ICE and XT4
3818	(( iia = $numprocs_atmos / $threads_per_task ))
3819	(( iio = $numprocs_ocean / $threads_per_task ))
3820	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3821	printf "\n using $coupled_mode coupling"
3822	printf "\n\n"
3823
3824	if [[ $coupled_mode = "mpi2" ]]
3825	then
3826	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3827	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3828	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3829	then
3830
3831	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3832	then
3833	# export MPI_LAUNCH_TIMEOUT=360
3834	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3835	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3836	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3837	then
3838	# ulimit -s 300000 # A too large stack size causes problems
3839	# export MV2_NUM_PORTS=2
3840	# export MV2_CPU_MAPPING=0:1:2:3
3841	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3842	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3843	fi
3844
3845	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3846	then
3847
3848	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3849	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3850
3851	else
3852	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3853	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3854	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3855	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3856	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3857	fi
3858	wait
3859
3860	else
3861
3862	echo "coupled_run $iia $iio" > runfile_atmos
3863	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3864	then
3865
3866	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3867	then
3868	# export MPI_LAUNCH_TIMEOUT=360
3869	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3870	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3871	then
3872	# ulimit -s 300000 # A too large stack size causes problems
3873	# export MV2_NUM_PORTS=2
3874	# export MV2_CPU_MAPPING=0:1:2:3
3875	mpiexec ./a.out $ROPTS < runfile_atmos
3876	fi
3877
3878	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3879	then
3880
3881	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3882
3883	elif [[ $host = lck \|\| $host = lckordi ]]
3884	then
3885
3886	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3887
3888	elif [[ $host = lckyu* ]]
3889	then
3890
3891	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3892
3893	fi
3894	wait
3895	fi
3896
3897	fi
3898	elif [[ $host = lckyoto ]]
3899	then
3900	set -xv
3901	export P4_RSHCOMMAND=plesh
3902	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3903	if [[ "$ENVIRONMENT" = BATCH ]]
3904	then
3905	if [[ "$cond2" = fujitsu ]]
3906	then
3907	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3908	elif [[ "cond2" = pgi ]]
3909	then
3910	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3911	else
3912	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3913	fi
3914	else
3915	if [[ "$cond2" = "" ]]
3916	then
3917	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3918	else
3919	mpirun -np $numprocs ./a.out $ROPTS
3920	fi
3921	fi
3922	set +xv
3923	elif [[ $host = lctit ]]
3924	then
3925	export OMP_NUM_THREADS=$threads_per_task
3926	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3927	if [[ "$threads_per_task" != 1 ]]
3928	then
3929	export MV2_ENABLE_AFFINITY=0
3930	fi
3931	echo "----- PBS_NODEFILE content:"
3932	cat $PBS_NODEFILE
3933	echo "-----"
3934	(( ii = $numprocs / $threads_per_task ))
3935	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3936	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3937	else
3938	mpprun -n $numprocs a.out $ROPTS
3939	fi
3940	[[ $? != 0 ]] && execution_error=true
3941
3942
3943	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3944	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3945	then
3946	apprentice
3947	fi
3948	else
3949	a.out $ROPTS
3950	fi
3951	fi
3952	if [[ $? != 0 \|\| $execution_error = true ]]
3953	then
3954
3955	# ABBRUCH BEI LAUFZEITFEHLER
3956	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3957	printf "\n +++ runtime error occured"
3958	locat=execution
3959	exit
3960	else
3961	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3962	printf "\n$striche\n *** execution finished \n"
3963
3964	# Stop the dvr streaming server and process the dvr output in order
3965	# to create dvrs- and html-files containing all streams
3966	if [[ "$dvrserver_id" != "" ]]
3967	then
3968	kill $dvrserver_id
3969	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3970
3971	# If there is a directory, data have been output by the
3972	# streaming server. Otherwise, user has chosen dvrp_output=local
3973	if [[ -d DATA_DVR ]]
3974	then
3975
3976	# Add the current dvr configuration file to the dvr output
3977	# directory
3978	cp .dvrserver.config DATA_DVR
3979
3980	# Process the dvr output (option -s for also generating
3981	# sequence mode data)
3982	process_dvr_output -d DATA_DVR -f $fname -s
3983
3984	else
3985
3986	# Process the local output
3987	process_dvr_output -l -d DATA_DVR -f $fname
3988
3989	fi
3990
3991	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3992	then
3993
3994	# Process dvr output generated in local mode (dvrp_output=local)
3995	process_dvr_output -l -d DATA_DVR -f $fname
3996
3997	fi
3998	fi
3999
4000
4001
4002	# Call of combine_plot_fields in order to merge single files written
4003	# by each PE into one file.
4004	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
4005	then
4006	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
4007	printf "\n 2d- and/or 3d-data may be incomplete!"
4008	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
4009	elif [[ "$combine_plot_fields" == true ]]
4010	then
4011	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
4012	then
4013	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
4014	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
4015	else
4016	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
4017	combine_plot_fields${block}.x
4018	fi
4019	else
4020	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4021	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4022	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4023	fi
4024
4025
4026
4027	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4028	(( i = 0 ))
4029	while (( i < ioc ))
4030	do
4031	(( i = i + 1 ))
4032	if (( i == 1 ))
4033	then
4034	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4035	fi
4036	printf "\n >>> ${out_command[$i]}"
4037	eval ${out_command[$i]}
4038	if (( i == ioc ))
4039	then
4040	printf "\n$striche\n"
4041	fi
4042	done
4043
4044
4045	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4046	if [[ $do_trace = true ]]
4047	then
4048	printf "\n\n"
4049	ls -al
4050	fi
4051
4052
4053
4054	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4055	(( i = 0 ))
4056	while (( i < iout ))
4057	do
4058	(( i = i + 1 ))
4059	if (( i == 1 ))
4060	then
4061	printf "\n\n *** saving OUTPUT-files:\n$striche"
4062	fi
4063
4064	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4065	files_for_pes=false; filetyp=file
4066	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4067	then
4068	files_for_pes=true; filetyp=directory
4069	actionout[$i]=""
4070	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4071	then
4072	actionout[$i]=""
4073	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4074	then
4075	files_for_pes=true; filetyp=directory
4076	actionout[$i]="ar"
4077	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4078	then
4079	actionout[$i]="ar"
4080	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4081	then
4082	files_for_pes=true; filetyp=directory
4083	actionout[$i]="fl"
4084	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4085	then
4086	actionout[$i]="fl"
4087	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4088	then
4089	files_for_pes=true; filetyp=directory
4090	actionout[$i]="tr"
4091	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4092	then
4093	actionout[$i]="tr"
4094	fi
4095
4096	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4097	then
4098	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4099	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4100	then
4101	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4102	else
4103
4104
4105	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4106	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4107	# REMOTE-RECHNUNGEN
4108	if [[ "${actionout[$i]}" = tr ]]
4109	then
4110	if [[ $localhost != $fromhost ]]
4111	then
4112	if [[ $files_for_pes = false ]]
4113	then
4114	cps=""
4115	cst=""
4116	else
4117	cps=-c
4118	cst="/"
4119	fi
4120	if [[ $localhost = nech ]]
4121	then
4122
4123	# TRANSFER IN EIGENSTAENDIGEM JOB
4124	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4125	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4126	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4127	if [[ $files_for_pes = false ]]
4128	then
4129	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4130	else
4131	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4132	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4133	fi
4134
4135	echo "set -x" > transfer_${localout[$i]}
4136	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4137
4138	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4139	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4140	printf "\n or higher cycle\n"
4141	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4142
4143	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4144
4145	if [[ $localhost = nech ]]
4146	then
4147	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4148	else
4149	if [[ "$LOGNAME" = b323013 ]]
4150	then
4151	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4152	else
4153	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4154	fi
4155	fi
4156
4157	else
4158
4159	# TRANSFER INNERHALB DIESES JOBS
4160	transfer_failed=false
4161	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4162	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4163	if [[ $localhost = lccrayb ]]
4164	then
4165	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4166	elif [[ $localhost = lccrayh ]]
4167	then
4168	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4169	else
4170	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4171	fi
4172	[[ $? != 0 ]] && transfer_failed=true
4173
4174	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4175	# LOKALER MASCHINE ANLEGEN
4176	if [[ $transfer_failed = true ]]
4177	then
4178	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4179	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4180
4181	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4182	# ANLEGEN.
4183	eval local_catalog=${pathout[$i]}
4184	if [[ ! -d $local_catalog ]]
4185	then
4186	printf " *** local directory does not exist. Trying to create:\n"
4187	printf " $local_catalog \n"
4188	mkdir -p $local_catalog
4189	fi
4190	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4191	transfer_problems=true
4192	fi
4193	fi
4194	else
4195
4196	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4197	actionout[$i]=""
4198	fi
4199	fi
4200
4201
4202	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4203	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4204	# REMOTE-RECHNUNGEN
4205	if [[ "${actionout[$i]}" = tra ]]
4206	then
4207	if [[ $localhost != $fromhost ]]
4208	then
4209	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4210	then
4211
4212	# TRANSFER IN EIGENSTAENDIGEM JOB
4213	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4214	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4215	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4216	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4217
4218	echo "set -x" > transfer_${localout[$i]}
4219	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4220
4221	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4222	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4223	printf "\n or higher cycle\n"
4224	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4225
4226	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4227
4228	if [[ $localhost = nech ]]
4229	then
4230	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4231	else
4232	if [[ $LOGNAME = b323013 ]]
4233	then
4234	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4235	else
4236	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4237	fi
4238	fi
4239
4240	else
4241
4242	# TRANSFER INNERHALB DIESES JOBS
4243	transfer_failed=false
4244	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4245	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4246	if [[ $localhost = lccrayb ]]
4247	then
4248	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4249	elif [[ $localhost = lccrayh ]]
4250	then
4251	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4252	else
4253	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4254	fi
4255	[[ $? != 0 ]] && transfer_failed=true
4256
4257	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4258	# LOKALER MASCHINE ANLEGEN
4259	if [[ $transfer_failed = true ]]
4260	then
4261	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4262	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4263
4264	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4265	# ANLEGEN
4266	eval local_catalog=${pathout[$i]}
4267	if [[ ! -d $local_catalog ]]
4268	then
4269	printf " *** local directory does not exist. Trying to create:\n"
4270	printf " $local_catalog \n"
4271	mkdir -p $local_catalog
4272	fi
4273
4274	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4275	transfer_problems=true
4276	fi
4277	fi
4278	else
4279
4280	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4281	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4282	actionout[$i]=a
4283	fi
4284	fi
4285
4286
4287	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4288	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4289	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4290	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4291	if [[ "${actionout[$i]}" = fl ]]
4292	then
4293	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4294	chmod g+rx $tmp_data_catalog
4295	if [[ $files_for_pes = false ]]
4296	then
4297	printf "\n >>> OUTPUT: ${localout[$i]} to"
4298	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4299	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4300	else
4301	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4302	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4303	mkdir $tmp_data_catalog/${frelout[$i]}
4304	cd ${localout[$i]}
4305	for file in $(ls *)
4306	do
4307	ln -f $file $tmp_data_catalog/${frelout[$i]}
4308	done
4309	cd $TEMPDIR
4310	fi
4311
4312
4313	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4314	if [[ $store_on_archive_system = true ]]
4315	then
4316
4317	if [[ $archive_system = asterix ]]
4318	then
4319	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4320	if [[ $files_for_pes = false ]]
4321	then
4322	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4323	else
4324	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4325	fi
4326	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4327	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4328	echo "then" >> archive_${frelout[$i]}
4329	echo " do_stageout=false" >> archive_${frelout[$i]}
4330	echo "else" >> archive_${frelout[$i]}
4331	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4332	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4333	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4334	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4335	if [[ $files_for_pes = false ]]
4336	then
4337	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4338	else
4339	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4340	fi
4341	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4342	echo "fi" >> archive_${frelout[$i]}
4343	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4344	elif [[ $archive_system = DMF ]]
4345	then
4346	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4347	if [[ $files_for_pes = false ]]
4348	then
4349	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4350	locat=DMF
4351	exit
4352	else
4353	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4354	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4355	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4356	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4357	fi
4358	elif [[ $archive_system = tivoli ]]
4359	then
4360	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4361	if [[ $files_for_pes = false ]]
4362	then
4363	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4364	echo "set -x" >> archive_${frelout[$i]}
4365	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4366	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4367	else
4368
4369	echo "set -x" >> archive_${frelout[$i]}
4370	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4371	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4372	cd $tmp_data_catalog
4373	all_files=`ls -1 ${frelout[$i]}/*`
4374	cd - > /dev/null
4375	(( inode = 0 ))
4376	(( tp1 = tasks_per_node + 1 ))
4377	while (( inode < nodes ))
4378	do
4379	# echo "*** all_files = \"$all_files\" "
4380	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4381	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4382	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4383	# echo "*** files = \"$files\" "
4384	# echo "*** all_files = \"$all_files\" "
4385	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4386	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4387	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4388	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4389	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4390	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4391	(( inode = inode + 1 ))
4392	done
4393	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4394	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4395	fi
4396	elif [[ $archive_system = ut ]]
4397	then
4398	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4399	if [[ $files_for_pes = false ]]
4400	then
4401	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4402	echo "set -x" >> archive_${frelout[$i]}
4403	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4404	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4405	else
4406
4407	echo "set -x" >> archive_${frelout[$i]}
4408	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4409	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4410	cd $tmp_data_catalog
4411	all_files=`ls -1 ${frelout[$i]}/*`
4412	cd - > /dev/null
4413	(( inode = 0 ))
4414	(( tp1 = tasks_per_node + 1 ))
4415	while (( inode < nodes ))
4416	do
4417	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4418	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4419	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4420	(( inode = inode + 1 ))
4421	done
4422	fi
4423	elif [[ $archive_system = none ]]
4424	then
4425	printf " +++ archiving on $localhost not available!\n"
4426	fi
4427
4428	if [[ $archive_system != none ]]
4429	then
4430	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4431	then
4432	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4433	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4434	elif [[ $localhost = nech ]]
4435	then
4436	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4437	fi
4438	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4439	fi
4440	else
4441	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4442	fi
4443
4444
4445	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4446	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4447	if [[ $files_for_pes = false ]]
4448	then
4449	cat /dev/null > ${pathout[$i]}
4450	else
4451	mkdir -p ${pathout[$i]}
4452	fi
4453
4454	fi
4455
4456
4457	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4458	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4459	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4460	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4461	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4462	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4463	if [[ "${actionout[$i]}" = ar ]]
4464	then
4465	if [[ $files_for_pes = false ]]
4466	then
4467	printf "\n >>> OUTPUT: ${localout[$i]} to"
4468	printf "\n ${pathout[$i]}"
4469	printf "\n File will be copied to archive-system ($archive_system) !\n"
4470	else
4471	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4472	printf "\n ${pathout[$i]}"
4473	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4474	fi
4475	mv ${localout[$i]} ${frelout[$i]}
4476
4477	file_saved=false
4478
4479	if [[ $archive_system = asterix ]]
4480	then
4481	do_stageout=true
4482	(( stageout_anz = 0 ))
4483	while [[ $do_stageout = true ]]
4484	do
4485	if [[ $files_for_pes = false ]]
4486	then
4487	stageout ${frelout[$i]} > STAGE_OUTPUT
4488	else
4489	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4490	fi
4491	cat STAGE_OUTPUT
4492	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4493	then
4494	file_saved=true
4495	do_stageout=false
4496	else
4497	if [[ $files_for_pes = false ]]
4498	then
4499	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4500	else
4501	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4502	fi
4503	(( stageout_anz = stageout_anz + 1 ))
4504	if (( stageout_anz == 10 ))
4505	then
4506	printf "\n +++ stoped after 10 unsuccessful tries!"
4507	archive_save=false
4508	do_stageout=false
4509	else
4510	printf "\n *** new try to store on archive after 15 min:"
4511	sleep 900
4512	fi
4513	fi
4514	done
4515	elif [[ $archive_system = DMF ]]
4516	then
4517	if [[ $files_for_pes = false ]]
4518	then
4519	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4520	locat=DMF
4521	exit
4522	else
4523	rm -rf $ARCHIVE/${frelout[$i]}
4524	cp -r ${frelout[$i]} $ARCHIVE
4525	fi
4526	file_saved=true
4527	elif [[ $archive_system = tivoli ]]
4528	then
4529	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4530	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4531	# GELEGT WERDEN
4532	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4533	chmod g+rx $tmp_data_catalog
4534	if [[ $files_for_pes = false ]]
4535	then
4536	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4537	else
4538	mkdir $tmp_data_catalog/${frelout[$i]}
4539	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4540	fi
4541
4542	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4543	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4544	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4545	if [[ $files_for_pes = false ]]
4546	then
4547	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4548	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4549	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4550	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4551	else
4552	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4553	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4554	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4555	fi
4556
4557	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4558	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4559	file_saved=true
4560
4561	elif [[ $archive_system = ut ]]
4562	then
4563	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4564	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4565	# GELEGT WERDEN
4566	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4567	chmod g+rx $tmp_data_catalog
4568	if [[ $files_for_pes = false ]]
4569	then
4570	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4571	else
4572	mkdir $tmp_data_catalog/${frelout[$i]}
4573	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4574	fi
4575
4576	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4577	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4578	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4579	if [[ $files_for_pes = false ]]
4580	then
4581	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4582	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4583	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4584	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4585	else
4586	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4587	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4588	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4589	fi
4590
4591	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4592	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4593	file_saved=true
4594
4595	else
4596	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4597	archive_save=false
4598	fi
4599	if [[ $file_saved = true ]]
4600	then
4601	if [[ $files_for_pes = false ]]
4602	then
4603	cat /dev/null > ${pathout[$i]}
4604	else
4605	mkdir -p ${pathout[$i]}
4606	fi
4607	fi
4608	fi
4609
4610	# APPEND AUF LOKALER MASCHINE
4611	if [[ "${actionout[$i]}" = "a" ]]
4612	then
4613	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4614	then
4615	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4616	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4617	else
4618	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4619	cat ${localout[$i]} >> ${pathout[$i]}
4620	fi
4621	fi
4622
4623	# KOPIEREN AUF LOKALER MASCHINE
4624	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4625	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4626	then
4627
4628	# KOPIEREN AUF EINPROZESSORMASCHINE
4629	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4630	then
4631	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4632	if [[ $link_local_output = true ]]
4633	then
4634	printf " using ln -f\n"
4635	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4636	fi
4637	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4638	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4639	then
4640	if [[ $link_local_output = true ]]
4641	then
4642	printf " ln failed, using cp...\n"
4643	fi
4644	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4645	fi
4646	else
4647	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4648	if [[ $link_local_output = true ]]
4649	then
4650	printf " using ln -f\n"
4651	ln -f ${localout[$i]} ${pathout[$i]}
4652	fi
4653	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4654	if [[ ! -f "${pathout[$i]}" ]]
4655	then
4656	if [[ $link_local_output = true ]]
4657	then
4658	printf " ln failed, using cp...\n"
4659	fi
4660	cp ${localout[$i]} ${pathout[$i]}
4661	fi
4662	fi
4663
4664	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4665	then
4666
4667	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4668	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4669	# WIRD DANN KOPIERT
4670	# PER MOVE UMBENANNT WERDEN
4671	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4672	if [[ $link_local_output = true ]]
4673	then
4674	printf " using ln -f\n"
4675	mkdir ${pathout[$i]}
4676	cd ${localout[$i]}
4677	for file in $(ls *)
4678	do
4679	ln -f $file ${pathout[$i]}
4680	done
4681	cd $TEMPDIR
4682	fi
4683	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4684	if [[ ! -f "${pathout[$i]}/_0000" ]]
4685	then
4686	if [[ $link_local_output = true ]]
4687	then
4688	printf " ln failed for .../_0000, using cp...\n"
4689	fi
4690	cp -r ${localout[$i]} ${pathout[$i]}
4691	fi
4692
4693	fi
4694	fi
4695	done
4696	if (( i != 0 ))
4697	then
4698	if [[ $transfer_problems = true ]]
4699	then
4700	printf "\n$striche\n *** OUTPUT-files saved"
4701	printf "\n +++ WARNING: some data transfers failed! \n"
4702	else
4703	printf "\n$striche\n *** all OUTPUT-files saved \n"
4704	fi
4705	fi
4706
4707
4708	# EVENTUELL FOLGEJOB STARTEN
4709	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4710	if [[ -f CONTINUE_RUN ]]
4711	then
4712
4713	if [[ $archive_save = true ]]
4714	then
4715
4716	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4717	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4718	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4719	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4720	# HANDEN
4721	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4722	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4723	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4724	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4725	then
4726	mc=`echo $mc \| sed 's/#/f/g'`
4727	fi
4728
4729
4730	# JOB STARTEN
4731	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4732	echo " $mc"
4733	printf "\n$striche\n"
4734	if [[ $localhost != $fromhost ]]
4735	then
4736
4737	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = lccrayh \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4738	then
4739	echo "*** ssh will be used to initiate restart-runs!"
4740	echo " return_addres=\"$return_addres\" "
4741	echo " return_username=\"$return_username\" "
4742	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4743	then
4744	if [[ $localhost = ibmh ]]
4745	then
4746	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4747	elif [[ $localhost = lccrayb ]]
4748	then
4749	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4750	elif [[ $localhost = lccrayh ]]
4751	then
4752	ssh $usern@hlogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4753
4754	else
4755	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4756	fi
4757	else
4758	if [[ $localhost = ibmkisti ]]
4759	then
4760	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4761	elif [[ $localhost = lcflow ]]
4762	then
4763	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4764	elif [[ $localhost = lccrayb ]]
4765	then
4766	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4767	elif [[ $localhost = lccrayh ]]
4768	then
4769	ssh $usern@130.75.4.1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4770	else
4771	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4772	fi
4773	fi
4774	else
4775	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4776	locat=restart; exit
4777	fi
4778
4779	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4780	# DER AKTUELLE JOB ENDET
4781	if [[ $queue = special1q ]]
4782	then
4783	sleep 120
4784	else
4785	sleep 30
4786	fi
4787
4788	else
4789
4790	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4791	# RUFEN WERDEN, AUSSER AUF lcfimm
4792	cd $LOCAL_PWD
4793	if [[ $localhost = lcfimm ]]
4794	then
4795	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4796	elif [[ $localhost = lckyuh ]]
4797	then
4798	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4799	printf "\n please restart job manually using command:\n"
4800	printf "\n \"$mc\" "
4801	else
4802	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4803	fi
4804	cd - > /dev/null
4805	fi
4806	if [[ $localhost = lckyuh ]]
4807	then
4808	printf "\n$striche\n *** restart-run to be initiated manually\n"
4809	else
4810	printf "\n$striche\n *** restart-run initiated \n"
4811	fi
4812
4813
4814	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4815	# GEHOLT WORDEN SIND, LOESCHEN
4816	(( i = 0 ))
4817	while (( i < iin ))
4818	do
4819	(( i = i + 1 ))
4820	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4821	then
4822	rm -r $tmp_data_catalog/${frelin[$i]}
4823	fi
4824	done
4825
4826	else
4827
4828	printf "\n +++ no restart-run possible, since errors occured"
4829	printf "\n during the archive process"
4830	fi
4831
4832	fi
4833
4834
4835
4836	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4837	if [[ "$email_notification" != "none" ]]
4838	then
4839
4840	if [[ $localhost != $fromhost ]]
4841	then
4842	if [[ -f CONTINUE_RUN ]]
4843	then
4844	echo "PALM restart run necessary" > email_text
4845	echo "description header of actual run:" >> email_text
4846	cat CONTINUE_RUN >> email_text
4847	echo "mrun-command to restart:" >> email_text
4848	echo "$mc" >> email_text
4849	else
4850	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4851	fi
4852	mail $email_notification < email_text
4853	printf "\n *** email notification sent to \"$email_notification\" "
4854	fi
4855	fi
4856
4857
4858
4859	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4860	cd $HOME
4861	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4862
4863	else
4864
4865
4866	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4867	# CHENDE AKTIONEN DURCHGEFUEHRT
4868
4869	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4870	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4871	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4872	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4873	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4874	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4875	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4876	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4877	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4878	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4879	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4880	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4881	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4882	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4883	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4884	if [[ $use_openmp = true ]]
4885	then
4886	mrun_com=${mrun_com}" -O $threads_per_task"
4887	fi
4888	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4889	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4890	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4891	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4892	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4893	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4894	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4895	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4896	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4897	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4898	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4899	if [[ $do_remote = true ]]
4900	then
4901	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4902	fi
4903
4904
4905	# create executable for batch job
4906	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4907	then
4908
4909	printf "\n *** creating the executable for batch job\n"
4910
4911	# method only works for batch jobs on local hosts
4912	if [[ $host != $localhost ]]
4913	then
4914	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4915	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4916	locat=create_executable; exit
4917	fi
4918
4919	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4920	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4921
4922	cp $make_depository .
4923	tar -xf $make_depository > /dev/null 2>&1
4924	cp ../* . > /dev/null 2>&1
4925
4926	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4927
4928	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4929	then
4930	printf "\n +++ error occured while compiling or linking"
4931	locat=compile
4932	exit
4933	fi
4934
4935	mv a.out ..
4936	cd - > /dev/null 2>&1
4937	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4938
4939	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4940
4941	fi
4942
4943
4944	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4945	jobfile=jobfile.$RANDOM
4946
4947
4948	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4949	echo "mkdir $TEMPDIR" >> $jobfile
4950	echo "cd $TEMPDIR" >> $jobfile
4951
4952
4953	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4954	if [[ $do_trace = true ]]
4955	then
4956	echo "set -x" >> $jobfile
4957	else
4958	echo "set +vx" >> $jobfile
4959	fi
4960
4961
4962	# initialize the environment and load modules
4963	if [[ "$init_cmds" != "" ]]
4964	then
4965	echo "$init_cmds" >> $jobfile
4966	fi
4967	if [[ "$module_calls" != "" ]]
4968	then
4969	echo "$module_calls" >> $jobfile
4970	fi
4971
4972
4973	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4974	# DATEI FUER DEN JOB
4975	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf \|\| $host = lccrayh ]]
4976	then
4977
4978	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4979	# KOPIEREN
4980	if [[ $restart_run != true ]]
4981	then
4982	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4983	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4984	fi
4985
4986	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4987	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4988	echo "set -x" >> $jobfile
4989	if [[ $host = $localhost ]]
4990	then
4991
4992	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4993	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4994	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4995
4996	else
4997	if [[ $host = ibmkisti ]]
4998	then
4999	# on KISTI's IBM firewall is only opened on interactive node
5000	echo "localdir=\`pwd\`" >> $jobfile
5001	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5002	elif [[ $host = lccrayb ]]
5003	then
5004	echo "localdir=\`pwd\`" >> $jobfile
5005	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5006	elif [[ $host = lccrayh ]]
5007	then
5008	echo "localdir=\`pwd\`" >> $jobfile
5009	echo "ssh $SSH_PORTOPT $remote_username@hlogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5010
5011	else
5012	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5013	fi
5014	fi
5015	echo "export SOURCES_COMPLETE=true" >> $jobfile
5016
5017	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
5018	# ARBEITSVERZEICHNIS VERSCHIEBEN
5019	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
5020	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
5021	echo "chmod u+rwx $mrun_script_name" >> $jobfile
5022	echo "execute_mrun=true" >> $jobfile
5023	echo " " >> $jobfile
5024
5025	else
5026
5027	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
5028	# SOWIE GEGEBENENFALLS DES MAKEFILES
5029	if [[ $do_compile = true ]]
5030	then
5031
5032	source_catalog=SOURCES_FOR_RUN_$fname
5033
5034	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
5035	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
5036	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
5037	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
5038	echo "export SOURCES_COMPLETE=true" >> $jobfile
5039	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
5040
5041	for filename in $source_list
5042	do
5043	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5044	echo "cat > $filename << \"%END%\"" >> $jobfile
5045	cat $source_catalog/$filename >> $jobfile
5046	echo " " >> $jobfile
5047	echo "%END%" >> $jobfile
5048	echo " " >> $jobfile
5049	done
5050
5051	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5052	echo "cat > Makefile << \"%END%\"" >> $jobfile
5053	cat $source_catalog/Makefile >> $jobfile
5054	echo " " >> $jobfile
5055	echo "%END%" >> $jobfile
5056	echo " " >> $jobfile
5057
5058	echo "cd - > /dev/null" >> $jobfile
5059
5060	fi
5061
5062
5063	# ABSPEICHERN DER KONFIGURATIONSDATEI
5064	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5065	# Lines with #$ coming from the svn keyword substitution are
5066	# removed from the config file in order to avoid problems
5067	# with the SGE batch system
5068	echo "cat > $config_file << \"%END%\"" >> $jobfile
5069	if [[ $host = lckyuh ]]
5070	then
5071	# no cross compiler on compute node
5072	sed 's/frtpx/frt/g' $config_file >> $jobfile
5073	else
5074	sed 's/#$.*//g' $config_file >> $jobfile
5075	fi
5076	echo "%END%" >> $jobfile
5077	echo " " >> $jobfile
5078
5079
5080	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5081	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5082	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5083	if [[ $host = lckyuh ]]
5084	then
5085	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5086	else
5087	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5088	fi
5089	echo "%END%" >> $jobfile
5090	echo "chmod u+x $mrun_script_name" >> $jobfile
5091	echo "execute_mrun=true" >> $jobfile
5092	echo " " >> $jobfile
5093
5094	fi
5095
5096
5097	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5098	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5099	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5100	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5101	if [[ $do_remote = true ]]
5102	then
5103	(( i = 0 ))
5104	while (( i < iin ))
5105	do
5106	(( i = i + 1 ))
5107	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5108	if [[ "${transin[$i]}" = job ]]
5109	then
5110	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5111	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5112	echo " " >> $jobfile
5113	echo "%END%" >> $jobfile
5114	else
5115	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5116	fi
5117
5118	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5119	echo "if [[ \$? = 1 ]]" >> $jobfile
5120	echo "then" >> $jobfile
5121	echo " echo \" \" " >> $jobfile
5122	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5123	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5124	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5125	echo " execute_mrun=false" >> $jobfile
5126	echo "fi" >> $jobfile
5127	done
5128	fi
5129
5130	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5131	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5132	echo "LOCAL_PWD=$working_directory" >> $jobfile
5133	echo "export LOCAL_PWD" >> $jobfile
5134
5135	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5136	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5137	echo "export LOCAL_MRUN_PATH" >> $jobfile
5138
5139	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5140	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5141	then
5142	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5143	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5144	then
5145	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5146	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5147	fi
5148
5149	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5150	echo "set -x" >> $jobfile
5151	echo "queue=$queue" >> $jobfile
5152	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5153	echo 'ls -al; echo `pwd`' >> $jobfile
5154	echo "cd \$HOME" >> $jobfile
5155	echo "rm -rf $TEMPDIR" >> $jobfile
5156
5157
5158
5159
5160	# JOB PER SUBJOB STARTEN
5161	if [[ $silent = false ]]
5162	then
5163	printf "\n "
5164	else
5165	printf "\n\n"
5166	fi
5167
5168	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5169	rm -rf $jobfile
5170
5171
5172	fi # ENDE REMOTE-TEIL
5173
5174
5175
5176	# ENDE DER PROZEDUR

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