Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 1203

Last change on this file since 1203 was 1203, checked in by witha, 11 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 184.1 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1203 2013-07-10 16:35:03Z witha $
29	#
30	# 1201 2013-07-10 16:17:59Z witha
31	# adjustments for Forwind cluster (lcflow)
32	#
33	# 1199 2013-07-05 14:52:22Z raasch
34	# adjustments for CSC Helsinki (lccrayf),
35	# executables for batch jobs can be created in advance, in order to avoid calling
36	# the compiler within the batch job (only works if batch jobs are submitted on
37	# local host)
38	#
39	# 1190 2013-06-25 09:39:21Z heinze
40	# enable use of automatic restarts for ibmh
41	# use of cluster/express queue enabled (ibmh)
42	#
43	# 1124 2013-04-09 15:46:52Z raasch
44	# variable "memory" is exported via typeset option -x, because otherwise an unknown
45	# side effect may lead to data loss while getopts is reading the script-option arguments
46	#
47	# 1122 2013-04-09 08:37:16Z heinze
48	# Bugfix: change type of variable last_char
49	#
50	# 1119 2013-04-05 15:11:19Z raasch
51	# Bugfix for setting -T option for subjob
52	#
53	# 1108 2013-03-05 07:03:32Z raasch
54	# bugfix for coupled runs on lckyut/lckyuh
55	#
56	# 1106 2013-03-04 05:31:38Z raasch
57	# --stdin argument for mpiexec on lckyuh
58	# -y and -Y settings output to header
59	#
60	# 1103 2013-02-20 02:15:53Z raasch
61	# default script runs again under ksh, because of unsolved problems with read
62	# from stdin: when bash script is called from a ksh, message "read error: 0:
63	# Resource temporarily unavailable" appears and script does not stop,
64	# further bash compatibility adjustments,
65	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
66	# on lckyuh, but mrun does not terminate and issues a warning instead
67	#
68	# 1101 2013-02-17 10:20:21Z raasch
69	# script now running under bash instead of ksh, which required small adjustments
70	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
71	# read from stdin),
72	# cross compilername on lckyuh compute nodes replaced by real compiler name
73	#
74	# 1099 2013-02-10 01:47:43Z raasch
75	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
76	# and for Forwind cluster (lcflow)
77	# small further adjustments for lckyut
78	#
79	# 1094 2013-02-03 01:52:12Z raasch
80	# explicit ssh/scp port can be set in config file with environment variable
81	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
82	# decalpha parts (yonsei) removed
83	#
84	# 2013-02-02 07:06:13Z raasch
85	# adjustments for Kyushu-University computing center (lckyut - tatara)
86	#
87	# 1083 2013-01-04 10:22:09Z maronga
88	# bugfix in parameter file check (read %cpp_options was missing)
89	#
90	# 1069 2012-11-28 16:18:43Z maronga
91	# bugfix: coupling mode was always set to mpi2, typos removed
92	#
93	# 1058 2012-11-21 07:00:35Z raasch
94	# Intel inspector (inspxe) is given the number of PEs instead of the number of
95	# nodes
96	#
97	# 1046 2012-11-09 14:38:45Z maronga
98	# code put under GPL (PALM 3.9)
99	#
100	# 21/03/94 - Siggi - first version finished
101	# 03/03/94 - Siggi - script development started
102	#
103	#--------------------------------------------------------------------------------#
104	# mrun - script for running PALM jobs
105	#--------------------------------------------------------------------------------#
106
107
108
109	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
110
111	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
112	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
113	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
114
115	AddFilenames=""
116	additional_conditions=""
117	add_source_path=""
118	afname=""
119	archive_save=true
120	archive_system=none
121	check_namelist_files=true
122	combine_plot_fields=true
123	compiler_name=""
124	cond1=""
125	cond2=""
126	config_file=.mrun.config
127	coupled_dist=""
128	coupled_mode="mpi1"
129	cpp_opts=""
130	cpp_options=""
131	cpumax=0
132	cpurest=0
133	create_executable_for_batch=false
134	delete_temporary_catalog=true
135	do_batch=false
136	do_compile=true
137	do_remote=false
138	do_stagein=true
139	do_stageout=true
140	do_trace=false
141	email_notification="none"
142	exclude=""
143	executable=""
144	execution_error=false
145	fimm=false
146	fname=test
147	fromhost=""
148	global_revision=""
149	group_number=none
150	host=""
151	host_file=""
152	hp=""
153	ignore_archive_error=false
154	input_list=""
155	interpreted_config_file=""
156	job_catalog="~/job_queue"
157	job_on_file=""
158	keep_data_from_previous_run=false
159	link_local_input=false
160	link_local_output=false
161	localhost_realname=$(hostname)
162	local_compile=false
163	local_dvrserver_running=.FALSE.
164	locat=normal
165	mainprog=""
166	makefile=""
167	max_par_io_str=""
168	mc=$0
169	while [[ $(echo $mc \| grep -c "/") != 0 ]]
170	do
171	mc=`echo $mc \| cut -f2- -d"/"`
172	done
173	module_calls=""
174	mrun_script_name=$mc
175	netcdf_inc=""
176	netcdf_lib=""
177	netcdf_support=false
178	node_usage=default
179	numprocs=""
180	numprocs_atmos=0
181	numprocs_ocean=0
182	OOPT=""
183	openmp=false
184	output_list=""
185	package_list=""
186	punkte="..........................................................."
187	queue=none
188	read_from_config=""
189	restart_run=false
190	if [[ `hostname` = rte10 ]]
191	then
192	return_addres=133.5.185.60
193	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
194	elif [[ `hostname` = climate0 ]]
195	then
196	return_addres=165.132.26.68
197	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
198	elif [[ `hostname` = urban00 ]]
199	then
200	return_addres=147.46.30.151
201	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
202	else
203	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
204	fi
205	return_password=""
206	return_username=$LOGNAME
207	remotecall=false
208	remote_username=""
209	run_coupled_model=false
210	run_mode=""
211	scirocco=false
212	store_on_archive_system=false
213	striche=" ----------------------------------------------------------------------------"
214	silent=false
215	source_list=""
216	source_path=SOURCE
217	tasks_per_node=""
218	threads_per_task=1
219	tmpcreate=false
220	tmp_data_catalog=""
221	transfer_problems=false
222	usern=$LOGNAME
223	use_openmp=false
224	version="MRUN 2.0 Rev$Rev: 1203 $"
225	working_directory=`pwd`
226	TOPT=""
227	XOPT=""
228	zeit=$( date \| cut -c 12-19 )
229
230	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
231	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
232	# effect may cause data loss when getopts is reading the
233	# script-option arguments
234	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
235
236
237
238
239	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
240	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
241
242	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
243	# EXPORTIERT WERDEN
244	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
245	export group_number input_list numprocs output_list queue run_mode
246
247
248
249	# FEHLERBEHANDLUNG
250	# BEI EXIT:
251	trap 'rm -rf $working_directory/tmp_mrun
252	if [[ $locat != localhost ]]
253	then
254	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
255	# then
256	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
257	#MRUN-calls on $localhost
258	#
259	#date and time user localhost remotehost termination mrun-command
260	#--------------------------------------------------------------------------------------------------------------------
261	#%STATEND%
262	# chmod 666 ${mrun_path}/statistik/mrun_statistik
263	# fi
264	#
265	# # EINTRAG IN DIE STATISTIK-DATEI
266	# string1=`date` #-L35
267	# string2=$usern #-L12
268	# string3=$localhost_realname #-L12
269	# string4=$host #-L12
270	# string5=$locat #-L12
271	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
272	# then
273	# if [[ $do_batch = true ]]
274	# then
275	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
276	# else
277	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
278	# fi
279	# fi
280	echo " " > /dev/null
281	fi
282
283	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
284	then
285
286	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
287	(( i = 0 ))
288	while (( i < iec ))
289	do
290	(( i = i + 1 ))
291	printf "\n *** Execution of ERROR-command:\n"
292	printf " >>> ${err_command[$i]}\n"
293	eval ${err_command[$i]}
294	done
295	if [[ -n $interpreted_config_file ]]
296	then
297	rm -rf $interpreted_config_file
298	fi
299	if [[ -n .mrun_environment ]]
300	then
301	rm -rf .mrun_environment
302	fi
303	if [[ $tmpcreate = true ]]
304	then
305	printf "\n *** Contents of \"$TEMPDIR\":\n"
306	ls -al; cd
307	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
308	fi
309	if [[ "$dvrserver_id" != "" ]]
310	then
311	echo "+++ killing dvrserver_id=$dvrserver_id"
312	kill $dvrserver_id
313	fi
314	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
315	then
316	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
317	fi
318	printf "\n\n+++ MRUN killed \n\n"
319	elif [[ $locat != control_c ]]
320	then
321	printf "\n\n --> all actions finished\n\n"
322	printf " Bye, bye $usern !!\n\n"
323	fi' exit
324
325
326	# BEI TERMINAL-BREAK:
327	trap 'rm -rf $working_directory/tmp_mrun
328	rm -rf $working_directory/tmp_check_namelist_files
329	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
330	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
331	then
332	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
333	fi
334	if [[ "$dvrserver_id" != "" ]]
335	then
336	echo "+++ killing dvrserver_id=$dvrserver_id"
337	kill $dvrserver_id
338	fi
339	printf "\n+++ MRUN killed by \"^C\" \n\n"
340	locat=control_c
341	exit
342	' 2
343
344
345	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
346	# BEEN SET
347	if [[ "$PALM_BIN" = "" ]]
348	then
349	printf "\n +++ environment variable PALM_BIN has not been set"
350	printf "\n please set it to the directory where the PALM scripts are located"
351	locat=palm_bin; exit
352	fi
353	export PATH=$PALM_BIN:$PATH
354
355
356
357	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
358	# FUER FOLGEJOBS BENOETIGT WIRD
359	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
360	do
361	case $option in
362	(a) afname=$OPTARG;;
363	(A) store_on_archive_system=true; mc="$mc -A";;
364	(b) do_batch=true; mc="$mc -b";;
365	(B) delete_temporary_catalog=false; mc="$mc -B";;
366	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
367	(C) restart_run=true; mc="$mc -C";;
368	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
369	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
370	(F) job_on_file="-D"; mc="$mc -F";;
371	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
372	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
373	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
374	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
375	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
376	(I) ignore_archive_error=true; mc="$mc -I";;
377	(k) keep_data_from_previous_run=true; mc="$mc -k";;
378	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
379	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
380	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
381	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
382	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
383	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
384	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
385	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
386	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
387	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
388	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
389	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
390	(S) read_from_config=false; mc="$mc -S";;
391	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
392	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
393	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
394	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
395	(v) silent=true; mc="$mc -v";;
396	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
397	(x) do_trace=true;set -x; mc="$mc -x";;
398	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
399	(y) ocean_file_appendix=true; mc="$mc -y";;
400	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
401	(z) check_namelist_files=false; mc="$mc -z";;
402	(Z) combine_plot_fields=false; mc="$mc -Z";;
403	(\?) printf "\n +++ unknown option $OPTARG \n"
404	printf "\n --> type \"$0 ?\" for available options \n"
405	locat=parameter;exit;;
406	esac
407	done
408
409
410	# EVTL. POSITIONSPARAMETER EINLESEN
411	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
412	(( to_shift = $OPTIND - 1 ))
413	shift $to_shift
414
415	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
416	if [[ "$1" = "?" ]]
417	then
418	(printf "\n *** mrun can be called as follows:\n"
419	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
420	printf "\n Description of available options:\n"
421	printf "\n Option Description Default-Value"
422	printf "\n -a base name of input files equiv. -d"
423	printf "\n -A archiving when using file-attribute fl"
424	printf "\n -b batch-job on local machine ---"
425	printf "\n -B do not delete temporary directory at end ---"
426	printf "\n -c configuration file .mrun.config"
427	printf "\n -d base name of files attached to program test"
428	printf "\n -D preprocessor(cpp)-directives \"\" "
429	printf "\n -F create remote job file only ---"
430	printf "\n -h execution host $localhost_realname"
431	printf "\n -i INPUT control list \"\" "
432	printf "\n -I archiving errors of previous batch-jobs"
433	printf "\n will be ignored"
434	printf "\n -k keep data from previous run"
435	printf "\n -K additional conditions for controling"
436	printf "\n usage of conditional code and"
437	printf "\n env-variables in configuration file \"\" "
438	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
439	printf "\n -M Makefile name Makefile"
440	printf "\n -n node usage (shared/not_shared) depending on -h"
441	printf "\n -o OUTPUT control list \"\" "
442	printf "\n -O use OpenMP ---"
443	printf "\n -p software package list \"\" "
444	printf "\n -q queue \"$queue\" "
445	printf "\n -r run control list (combines -i -o) \"\" "
446	printf "\n -s filenames of routines to be compiled \"\" "
447	printf "\n must end with .f, .f90, .F, or .c !"
448	printf "\n use \"..\" for more than one file and wildcards"
449	printf "\n -s LM compiles all locally modified files"
450	printf "\n -S config file interpreted by shellscript ---"
451	printf "\n -t allowed cpu-time in seconds (batch) 0"
452	printf "\n -T tasks per node depending on -h"
453	printf "\n -u username on remote machine \"\" "
454	printf "\n -v no prompt for confirmation ---"
455	printf "\n -w maximum parallel io streams as given by -X"
456	printf "\n -x tracing of mrun for debug purposes ---"
457	printf "\n -X # of processors (on parallel machines) 1"
458	printf "\n -y add appendix \"_O\" to all local output"
459	printf "\n files (ocean precursor runs followed by"
460	printf "\n coupled atmosphere-ocean runs) ---"
461	printf "\n -Y run coupled model, \"#1 #2\" with"
462	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
463	printf "\n -z disable a priori parameter file check ---"
464	printf "\n -Z skip combine_plot_fields at the end of "
465	printf "\n the simulation ---"
466	printf "\n "
467	printf "\n Possible values of positional parameter <modus>:"
468	printf "\n \"?\" - this outline \n\n") \| more
469	exit
470	elif [[ "$1" != "" ]]
471	then
472	printf "\n +++ positional parameter $1 unknown \n"
473	locat=parameter; exit
474	fi
475
476
477
478	# KURZE STARTMELDUNG
479	printf "\n*** $version "
480	printf "\n will be executed. Please wait ..."
481
482
483
484	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
485	if [[ ! -f $config_file ]]
486	then
487	printf "\n\n +++ configuration file: "
488	printf "\n $config_file"
489	printf "\n does not exist"
490	locat=connect; exit
491	fi
492
493
494	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
495	line=""
496	grep "%host_identifier" $config_file > tmp_mrun
497	while read line
498	do
499	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
500	then
501	HOSTNAME=`echo $line \| cut -d" " -s -f2`
502	host_identifier=`echo $line \| cut -d" " -s -f3`
503	if [[ $localhost_realname = $HOSTNAME ]]
504	then
505	localhost=$host_identifier
506	break
507	fi
508	fi
509	done < tmp_mrun
510
511	if [[ "$localhost" = "" ]]
512	then
513	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
514	printf "\n for local host \"$localhost_realname\"."
515	printf "\n Please add line"
516	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
517	printf "\n to the configuration file."
518	locat=localhost; exit
519	fi
520
521
522	# HOSTSPEZIFISCHE VARIABLEN SETZEN
523	case $localhost_realname in
524	(r1\|r2\|h01\|b01) archive_system=tivoli;;
525	(cs*) archive_system=ut;;
526	(fimm.bccs.uib.no) fimm=true;;
527	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
528	(scirocco) scirocco=true;;
529	esac
530
531
532
533	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
534	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
535	[[ "$afname" = "" ]] && afname=$fname
536
537
538	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
539	if [[ "$run_mode" != "" ]]
540	then
541	input_list="$input_list $run_mode"
542	output_list="$output_list $run_mode"
543	fi
544
545
546	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
547	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
548	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
549	# STARTET)
550	if [[ "$fromhost" = "" ]]
551	then
552	fromhost=$localhost
553	fi
554
555
556	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
557	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
558	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
559	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
560	if [[ -n $host && "$host" != $localhost ]]
561	then
562	do_batch=true
563	do_remote=true
564	case $host in
565	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
566	(*) printf "\n"
567	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
568	printf "\n is not available"
569	locat=nqs; (( iec = 0 )); exit;;
570	esac
571	else
572	host=$localhost
573	fi
574
575
576	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
577	if [[ -n $additional_conditions ]]
578	then
579	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
580	cond1=`echo $additional_conditions \| cut -d" " -f1`
581	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
582	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
583	if [[ -n $dummy ]]
584	then
585	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
586	locat=options; exit
587	fi
588	block=_$cond1
589	[[ -n $cond2 ]] && block=${block}_$cond2
590	fi
591
592
593	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
594	if [[ $run_coupled_model = true ]]
595	then
596
597	if [[ -n $coupled_dist ]]
598	then
599
600	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
601	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
602
603	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
604	then
605
606	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
607	printf "\n PEs (total) : $numprocs"
608	printf "\n PEs (atmosphere): $numprocs_atmos"
609	printf "\n PEs (ocean) : $numprocs_ocean"
610	locat=coupling; exit
611
612	fi
613
614	else
615
616	(( numprocs_ocean = $numprocs / 2 ))
617	(( numprocs_atmos = $numprocs / 2 ))
618
619	fi
620	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
621
622	# GET coupled_mode FROM THE CONFIG FILE
623	line=""
624	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
625	while read line
626	do
627	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
628	then
629	coupled_mode="mpi2"
630	fi
631	done < tmp_mrun
632
633	fi
634
635
636	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
637	# ARCHIVIERUNG FEHLGESCHLAGEN IST
638	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
639	then
640	if [[ $ignore_archive_error = false ]]
641	then
642	printf "\n +++ data archiving of previous run failed"
643	printf "\n see directory \~/job_queue on remote machine"
644	locat=archive; exit
645	else
646	printf "\n +++ warning: data archiving in a previous run failed"
647	printf "\n MRUN continues, trying to get backup copy"
648	fi
649	fi
650
651
652	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
653	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
654	mrun_memory=$memory
655	mrun_group_number=$group_number
656	mrun_cpumax=$cpumax
657	mrun_numprocs=$numprocs
658
659
660	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
661	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
662	if [[ "$read_from_config" = false ]]
663	then
664
665	[[ $silent = false ]] && printf "\n Reading the configuration file... "
666	while read zeile
667	do
668	[[ $silent = false ]] && printf "."
669
670
671	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
672	# ERSETZEN
673	eval zeile=\"$zeile\"
674
675
676	# INTERPRETATION DER ZEILE
677	if [[ "$(echo $zeile)" = "" ]]
678	then
679	# LEERZEILE, KEINE AKTION
680	continue
681
682	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
683	then
684
685	# ZEILE IST KOMMENTARZEILE
686	true
687
688	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
689	then
690
691	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
692	zeile=$(echo $zeile \| cut -c2-)
693	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
694	var=`echo $zeile \| cut -d" " -f1`
695	value=`echo $zeile \| cut -d" " -s -f2`
696	for_host=`echo $zeile \| cut -d" " -s -f3`
697	for_cond1=`echo $zeile \| cut -d" " -s -f4`
698	for_cond2=`echo $zeile \| cut -d" " -s -f5`
699
700	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
701	then
702
703	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
704	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
705	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
706
707
708	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
709	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
710	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
711	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
712	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
713	# KONFIGURATIONSDATEI
714	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
715	then
716	eval $var=\$value
717
718	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
719	if [[ $do_trace = true ]]
720	then
721	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
722	fi
723	fi
724
725	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
726	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
727	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
728	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
729	if [[ $var = host ]]
730	then
731	if [[ -n $host && "$host" != $localhost ]]
732	then
733	do_batch=true
734	do_remote=true
735	case $host in
736	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
737	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
738	printf "\n is not available"
739	locat=nqs; exit;;
740	esac
741	else
742	host=$localhost
743	fi
744	fi
745
746	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
747	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
748	# DEN PROGRAMMEN BENOETIGT WERDEN
749	export $var
750	fi
751
752
753
754
755	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
756	then
757
758	# ZEILE DEFINIERT ERROR-KOMMANDO
759	(( iec = iec + 1 ))
760	zeile=$(echo $zeile \| cut -c4-)
761	err_command[$iec]="$zeile"
762
763	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
764	then
765
766	# ZEILE DEFINIERT INPUT-KOMMANDO
767	(( iic = iic + 1 ))
768	zeile=$(echo $zeile \| cut -c4-)
769	in_command[$iic]="$zeile"
770
771	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
772	then
773
774	# ZEILE DEFINIERT OUTPUT-KOMMANDO
775	(( ioc = ioc + 1 ))
776	zeile=$(echo $zeile \| cut -c4-)
777	out_command[$ioc]="$zeile"
778
779	else
780
781	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
782	# s2a: in/out - Feld
783	# s2b: loc - Feld (optional)
784	# s2c: tr/ar - Feld (optional)
785	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
786	s1=`echo $zeile \| cut -d" " -f1`
787	s2=`echo $zeile \| cut -d" " -s -f2`
788	s2a=$(echo $s2 \| cut -d":" -f1)
789	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
790	then
791	s2b=""
792	s2c=""
793	else
794	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
795	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
796	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
797	fi
798	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
799	s3=`echo $zeile \| cut -d" " -f3`
800	s4=`echo $zeile \| cut -d" " -s -f4`
801	s5=`echo $zeile \| cut -d" " -s -f5`
802	s6=`echo $zeile \| cut -d" " -s -f6`
803
804
805	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
806	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
807	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
808	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
809	# HANDEN SEIN MUSS (D.H. s2b = loc)
810	IFSALT="$IFS"; IFS="$IFS:"
811	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
812	then
813	found=false
814	for actual in $input_list
815	do
816	for formal in $s3
817	do
818	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
819	done
820	done
821	if [[ $found = true ]]
822	then
823	(( iin = iin + 1 ))
824	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
825	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
826	extin[$iin]=$s6
827	fi
828	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
829	then
830	found=false
831	for actual in $output_list
832	do
833	for formal in $s3
834	do
835	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
836	done
837	done
838	if [[ $found = true ]]
839	then
840	(( iout = iout + 1 ))
841	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
842	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
843	fi
844	elif [[ "$s2a" != in && "$s2a" != out ]]
845	then
846	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
847	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
848	locat=connect; exit
849	fi
850	IFS="$IFSALT"
851	fi
852	done < $config_file
853
854	else
855
856
857	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
858	[[ $silent = false ]] && printf "..."
859	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
860	export interpreted_config_file=.icf.$RANDOM
861
862
863
864	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
865	# VERFUEGUNG STELLEN
866	cat > .mrun_environment << %%END%%
867	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
868	config_file = '$config_file', do_remote = '$do_remote',
869	do_trace = '$do_trace', host = '$host',
870	input_list = '$input_list', icf = '$interpreted_config_file',
871	localhost = '$localhost', output_list = '$output_list' /
872
873	%%END%%
874
875	if [[ $localhost_realname = "sx-fep" ]]
876	then
877	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
878	else
879
880	if [[ "$host" != $localhost ]]
881	then
882
883	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
884	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
885	if [[ $? != 0 ]]
886	then
887	printf "\n\n +++ no interpret_config found"
888	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
889	locat=interpret_config; exit
890	fi
891	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
892	$interpret_config_executable
893
894	else
895
896	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
897	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
898	then
899	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
900	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
901	locat=interpret_config; exit
902	else
903	interpret_config${block}.x
904	fi
905
906	fi
907	fi
908	rm .mrun_environment
909
910
911	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
912	chmod u+x $interpreted_config_file
913	export PATH=$PATH:.
914	. $interpreted_config_file
915	rm $interpreted_config_file
916
917	fi
918
919
920	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
921	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
922	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
923	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
924	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
925	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
926	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
927
928
929	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
930	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
931	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
932	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
933	if [[ "$SOURCES_COMPLETE" = "" ]]
934	then
935
936	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
937	# VEREINBART WURDE
938	source_path=""
939	line=""
940	grep "%source_path" $config_file > tmp_mrun
941	while read line
942	do
943	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
944	then
945	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
946	then
947	global_source_path=`echo $line \| cut -d" " -f2`
948	fi
949	fi
950	done < tmp_mrun
951
952	line=""
953	found=false
954	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
955	while read line
956	do
957	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
958	then
959	if [[ $found = true ]]
960	then
961	printf "\n\n +++ more than one source path found in configuration file"
962	printf "\n for local host \"$localhost\" "
963	locat=source_path; exit
964	fi
965	source_path=`echo $line \| cut -d" " -f2`
966	found=true
967	fi
968	done < tmp_mrun
969	rm tmp_mrun
970
971	if [[ "$source_path" = "" ]]
972	then
973	if [[ "$global_source_path" != "" ]]
974	then
975	source_path=$global_source_path
976	else
977	printf "\n\n +++ no source path found in configuration file"
978	printf "\n for local host \"$localhost\" "
979	locat=source_path; exit
980	fi
981	fi
982	eval source_path=$source_path
983
984	if [[ ! -d $source_path ]]
985	then
986	printf "\n\n +++ source path \"$source_path\" on local host"
987	printf "\n \"$localhost\" does not exist"
988	locat=source_path; exit
989	fi
990
991	fi
992
993
994	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
995	# DURCH OPTION -G MITGETEILT)
996	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
997	then
998	global_revision=`svnversion $source_path 2>/dev/null`
999	global_revision="Rev: $global_revision"
1000	fi
1001
1002
1003	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1004	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1005	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1006	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1007	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1008	if [[ -n $host && "$host" != $localhost ]]
1009	then
1010	do_batch=true
1011	do_remote=true
1012	case $host in
1013	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1014	(*) printf "\n"
1015	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1016	printf "\n is not available"
1017	locat=nqs; (( iec = 0 )); exit;;
1018	esac
1019	else
1020	host=$localhost
1021	fi
1022
1023
1024	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1025	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1026	then
1027
1028	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1029	if [[ ! -n $numprocs ]]
1030	then
1031	printf "\n"
1032	printf "\n +++ option \"-K parallel\" requires additional specification"
1033	printf "\n of the number of processors to be used by"
1034	printf "\n mrun-option \"-X\" or by environment-variable"
1035	printf "\n \"numprocs\" in the configuration file"
1036	locat=numprocs; (( iec = 0 )); exit
1037	fi
1038
1039	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1040	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1041	# GESAMTPROZESSORANZAHL IST
1042	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1043	then
1044	printf "\n"
1045	printf "\n +++ option \"-T\" (tasks per node) is missing"
1046	printf "\n set -T option or define tasks_per_node in the config file"
1047	locat=tasks_per_node; (( iec = 0 )); exit
1048	fi
1049	if [[ $host != lcflow && $host != lcxt5m ]]
1050	then
1051	(( ival = $tasks_per_node ))
1052	(( pes = numprocs ))
1053	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1054	# then
1055	# (( pes = pes - 1 ))
1056	# fi
1057	(( ii = pes / ival ))
1058	if (( pes - ii * ival > 0 ))
1059	then
1060	printf "\n"
1061	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1062	printf "\n divisor of the total number of processors (option \"-X\")"
1063	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1064	locat=tasks_per_node; (( iec = 0 )); exit
1065	fi
1066	fi
1067
1068
1069	# IBMY HAT NUR EINEN KNOTEN
1070	if [[ $host = ibmy ]]
1071	then
1072	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1073	then
1074	printf "\n"
1075	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1076	printf "\n total number of processors (option \"-X\")"
1077	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1078	locat=tasks_per_node; (( iec = 0 )); exit
1079	fi
1080	fi
1081
1082
1083	# SETTINGS FOR SUBJOB-COMMAND
1084	OOPT="-O $threads_per_task"
1085
1086	# GESAMTZAHL DER KNOTEN BESTIMMEN
1087	if [[ "$tasks_per_node" != "" ]]
1088	then
1089	TOPT="-T $tasks_per_node"
1090	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1091	fi
1092
1093	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1094	# SETZEN
1095	if [[ $node_usage = default ]]
1096	then
1097	if [[ $host = ibms ]]
1098	then
1099	node_usage=shared
1100	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1101	then
1102	node_usage=singlejob
1103	else
1104	node_usage=not_shared
1105	fi
1106	fi
1107
1108	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1109	then
1110	printf "\n"
1111	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1112	printf "\n \"shared\" or \"not_shared\""
1113	locat=tasks_per_node; (( iec = 0 )); exit
1114	fi
1115
1116	fi
1117
1118	# PRUEFEN, OB HOSTFILE EXISTIERT
1119	if [[ -n $hostfile ]]
1120	then
1121	if [[ ! -f $hostfile ]]
1122	then
1123	printf "\n"
1124	printf "\n +++ hostfile \"$hostfile\" does not exist"
1125	locat=hostfile; exit
1126	fi
1127	fi
1128
1129	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1130	if [[ $host = ibmy && $do_remote = false ]]
1131	then
1132	if [[ ! -f $HOME/.rhosts ]]
1133	then
1134	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1135	printf "\n\n *** file:"
1136	printf "\n $HOME/.rhosts"
1137	printf "\n was created\n"
1138	fi
1139	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1140	then
1141	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1142	printf "\n\n *** file:"
1143	printf "\n $HOME/.rhosts"
1144	printf "\n was extended by the name of the current host\n"
1145	fi
1146	fi
1147
1148
1149	# Set default value for the maximum number of parallel io streams
1150	if [[ "$maximum_parallel_io_streams" = "" ]]
1151	then
1152	maximum_parallel_io_streams=$numprocs
1153	fi
1154
1155
1156	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1157	if [[ "$scp_port" != "" ]]
1158	then
1159	PORTOPT="-P $scp_port"
1160	SSH_PORTOPT="-p $scp_port"
1161	fi
1162
1163
1164	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1165	if [[ $queue = none ]]
1166	then
1167	case $host in
1168	(ibmh) queue=cluster;;
1169	(ibmkisti) queue=class.32plus;;
1170	(ibmy) queue=parallel;;
1171	(lckiaps) queue=normal;;
1172	(lckyoto) queue=ph;;
1173	(lckyuh) queue=fx-single;;
1174	(lckyut) queue=cx-single;;
1175	(lcsgib) queue=testq;;
1176	(lcsgih) queue=testq;;
1177	(lctit) queue=S;;
1178	(nech) queue=none;;
1179	(necriam) queue=SP;;
1180	(unics) queue=unics;;
1181	esac
1182	fi
1183
1184
1185	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1186	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1187	# ERMITTELN
1188	(( i = 0 ))
1189	while (( i < iin ))
1190	do
1191	(( i = i + 1 ))
1192	(( maxcycle = 0 ))
1193
1194	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1195	if [[ "${actionin[$i]}" = di ]]
1196	then
1197	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1198	# REM-MASCHINE AUSWERTEN
1199	eval filename=${pathin[$i]}/${endin[$i]}
1200	else
1201	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1202	# REM-MASCHINE AUSWERTEN
1203	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1204	fi
1205	eval pathname=${pathin[$i]}
1206
1207	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1208	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1209	then
1210	filename_input=$filename
1211	fi
1212
1213	# PRUEFEN AUF VORHANDENSEIN
1214	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1215	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1216	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1217	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1218	then
1219	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1220	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1221	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1222	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1223	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1224	if [[ "${transin[$i]}" != "locopt" ]]
1225	then
1226	printf "\n\n +++ INPUT-file: "
1227	if [[ "${extin[$i]}" = "" ]]
1228	then
1229	printf "\n $filename"
1230	else
1231	printf "\n $filename.${extin[$i]}"
1232	fi
1233	printf "\n does not exist\n"
1234	locat=input; exit
1235	else
1236	transin[$i]="unavailable"
1237	fi
1238	else
1239
1240	# ZYKLUSNUMMER FESTSTELLEN
1241	ls -1 -d $filename > filelist 2>/dev/null
1242	ls -1 -d $filename.* >> filelist 2>/dev/null
1243	while read zeile
1244	do
1245	cycle=$(echo $zeile \| cut -f2 -d".")
1246	if [[ "$cycle" = "$zeile" ]]
1247	then
1248	(( icycle = 0 ))
1249	elif [[ "$cycle" = "${extin[$i]}" ]]
1250	then
1251	(( icycle = 0 ))
1252	else
1253	(( icycle = $cycle ))
1254	fi
1255	if (( icycle > maxcycle ))
1256	then
1257	(( maxcycle = icycle ))
1258	file_to_be_used=$zeile
1259	fi
1260	done <filelist
1261	rm filelist
1262
1263	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1264	if (( maxcycle > 0 ))
1265	then
1266	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1267	then
1268	filename=${filename}.$maxcycle.${extin[$i]}
1269	else
1270	filename=${filename}.$maxcycle
1271	fi
1272	else
1273	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1274	then
1275	filename=${filename}.${extin[$i]}
1276	fi
1277	fi
1278
1279	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1280	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1281	absnamein[$i]=$filename
1282	if (( maxcycle > 0 ))
1283	then
1284	if [[ "${actionin[$i]}" = di ]]
1285	then
1286	frelin[$i]=${endin[$i]}.$maxcycle
1287	else
1288	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1289	fi
1290	else
1291	if [[ "${actionin[$i]}" = di ]]
1292	then
1293	frelin[$i]=${endin[$i]}
1294	else
1295	frelin[$i]=${afname}${endin[$i]}
1296	fi
1297	fi
1298
1299	fi
1300	done
1301
1302	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1303	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1304	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1305	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1306	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1307	(( i = 0 ))
1308	while (( i < iout ))
1309	do
1310	(( i = i + 1 ))
1311	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1312	then
1313	if [[ "${actionout[$i]}" = tr ]]
1314	then
1315	actionout[$i]=""
1316	elif [[ "${actionout[$i]}" = trpe ]]
1317	then
1318	actionout[$i]=pe
1319	elif [[ "${actionout[$i]}" = tra ]]
1320	then
1321	actionout[$i]=a
1322	fi
1323	(( maxcycle = 0 ))
1324	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1325	eval catalogname=${pathout[$i]}
1326	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1327	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1328	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1329	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1330	then
1331
1332	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1333	if cat /dev/null > $filename
1334	then
1335	rm $filename
1336	else
1337
1338	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1339	if [[ ! -d $catalogname ]]
1340	then
1341	if mkdir -p $catalogname
1342	then
1343	printf "\n\n *** directory:"
1344	printf "\n $catalogname"
1345	printf "\n was created\n"
1346	else
1347	printf "\n\n +++ OUTPUT-file:"
1348	printf "\n $filename"
1349	printf "\n cannot be created, because directory does not exist"
1350	printf "\n and cannot be created either"
1351	printf "\n"
1352	locat=output ; exit
1353	fi 2>/dev/null
1354	else
1355	printf "\n\n +++ OUTPUT-file:"
1356	printf "\n $filename"
1357	printf "\n cannot be created, although directory exists"
1358	printf "\n"
1359	locat=output ; exit
1360	fi
1361	fi 2>/dev/null
1362	else
1363
1364	# ZYKLUSNUMMER FESTSTELLEN
1365	ls -1 -d $filename > filelist 2>/dev/null
1366	ls -1 -d $filename.* >> filelist 2>/dev/null
1367	while read zeile
1368	do
1369	cycle=$(echo $zeile \| cut -f2 -d".")
1370	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1371	then
1372	(( icycle = 1 ))
1373	else
1374	(( icycle = $cycle + 1 ))
1375	fi
1376	if (( icycle > maxcycle ))
1377	then
1378	(( maxcycle = icycle ))
1379	fi
1380	done <filelist
1381	rm filelist
1382	fi
1383
1384	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1385	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1386	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1387	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1388	if [[ "${actionout[$i]}" != a ]]
1389	then
1390	if (( maxcycle > 0 ))
1391	then
1392	filename=${filename}.$maxcycle
1393	if cat /dev/null > $filename
1394	then
1395	rm $filename
1396	else
1397	printf "\n +++ OUTPUT-file:"
1398	printf "\n $filename"
1399	printf "\n cannot be created"
1400	locat=output ; exit
1401	fi
1402	fi
1403	else
1404	(( maxcycle = maxcycle - 1 ))
1405	if (( maxcycle > 0 ))
1406	then
1407	filename=${filename}.$maxcycle
1408	fi
1409	fi
1410
1411	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1412	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1413	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1414	pathout[$i]=$filename
1415	if (( maxcycle > 0 ))
1416	then
1417	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1418	else
1419	frelout[$i]=${fname}${endout[$i]}
1420	fi
1421
1422	fi
1423	done
1424
1425
1426	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1427	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1428	then
1429	if [[ "$dvr_inc" = "" ]]
1430	then
1431	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1432	printf "\n This is required for the dvrp_graphics package.\n"
1433	locat=dvr; exit
1434	fi
1435	if [[ "$dvr_lib" = "" ]]
1436	then
1437	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1438	printf "\n This is required for the dvrp_graphics package.\n"
1439	locat=dvr; exit
1440	fi
1441	fi
1442
1443
1444	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1445	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1446	# UEBERSETZT ZU WERDEN)
1447	if [[ "$mainprog" = "" && "$executable" = "" ]]
1448	then
1449	printf "\n +++ neither main program nor executable defined"
1450	locat=source; exit
1451	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1452	then
1453	printf "\n +++ main program as well as executable defined"
1454	locat=source; exit
1455	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1456	then
1457	do_compile=false
1458	fi
1459
1460
1461	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1462	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1463	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1464	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1465	then
1466	rm -rf SOURCES_FOR_RUN_$fname
1467	mkdir SOURCES_FOR_RUN_$fname
1468	fi
1469
1470
1471	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1472	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1473	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1474	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1475	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1476	then
1477
1478	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1479
1480	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1481	then
1482
1483	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1484	source_list=""
1485	cd $source_path
1486
1487
1488	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1489	if [[ ! -d .svn ]]
1490	then
1491	printf "\n\n +++ source directory"
1492	printf "\n \"$source_path\" "
1493	printf "\n is not under control of \"subversion\"."
1494	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1495	fi
1496
1497
1498	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1499	Filenames=""
1500	svn status > tmp_mrun
1501	while read line
1502	do
1503	firstc=`echo $line \| cut -c1`
1504	if [[ $firstc = M \|\| $firstc = "?" ]]
1505	then
1506	Name=`echo "$line" \| cut -c8-`
1507	extension=`echo $Name \| cut -d. -f2`
1508	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1509	then
1510	Filenames="$Filenames "$Name
1511	fi
1512	fi
1513	done < tmp_mrun
1514
1515
1516	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1517	for dateiname in $Filenames
1518	do
1519	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1520	source_list=$source_list"$dateiname "
1521	done
1522
1523	cd - > /dev/null
1524
1525
1526	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1527	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1528	# VORHANDEN
1529	elif [[ "$source_list" != "" && $restart_run != true ]]
1530	then
1531
1532	cd $source_path
1533
1534	for filename in $source_list
1535	do
1536
1537	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1538	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1539	then
1540	printf "\n +++ source code file: $filename"
1541	printf "\n must not contain (\"/\") "
1542	locat=source; exit
1543	fi
1544
1545	if [[ ! -f $filename ]]
1546	then
1547	printf "\n +++ source code file: $filename"
1548	printf "\n does not exist"
1549	locat=source; exit
1550	else
1551	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1552	fi
1553
1554	done
1555
1556	cd - > /dev/null
1557
1558	fi
1559
1560
1561	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1562	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1563	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1564	if [[ $restart_run != true ]]
1565	then
1566
1567	if [[ ! -f "$source_path/$mainprog" ]]
1568	then
1569	printf "\n\n +++ main program: $mainprog"
1570	printf "\n does not exist in source directory"
1571	printf "\n \"$source_path\"\n"
1572	locat=source; exit
1573	else
1574	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1575	then
1576	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1577	source_list=${mainprog}" $source_list"
1578	fi
1579	fi
1580	fi
1581
1582
1583	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1584	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1585	if [[ "$restart_run" != true ]]
1586	then
1587	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1588	if [[ ! -f $makefile ]]
1589	then
1590	printf "\n +++ file \"$makefile\" does not exist"
1591	locat=make; exit
1592	else
1593	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1594	fi
1595	fi
1596
1597
1598	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1599	if [[ $restart_run != true && "$add_source_path" != "" ]]
1600	then
1601
1602	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1603	if [[ ! -d $add_source_path ]]
1604	then
1605	printf "\n\n +++ WARNING: additional source code directory"
1606	printf "\n \"$add_source_path\" "
1607	printf "\n does not exist or is not a directory."
1608	printf "\n No source code will be used from this directory!\n"
1609	add_source_path=""
1610	if [[ $silent == false ]]
1611	then
1612	sleep 3
1613	fi
1614	else
1615
1616	cd $add_source_path
1617	found=false
1618
1619	Names=$(ls -1 *.f90 2>&1)
1620	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1621	Names=$(ls -1 *.F90 2>&1)
1622	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1623	Names=$(ls -1 *.F 2>&1)
1624	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1625	Names=$(ls -1 *.f 2>&1)
1626	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1627	Names=$(ls -1 *.c 2>&1)
1628	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1629
1630	cd - > /dev/null
1631	cd SOURCES_FOR_RUN_$fname
1632
1633	# COPY MAKEFILE IF EXISTING
1634	if [[ -f $add_source_path/Makefile ]]
1635	then
1636	printf "\n\n *** user Makefile from directory"
1637	printf "\n \"$add_source_path\" is used \n"
1638	if [[ $silent == false ]]
1639	then
1640	sleep 1
1641	fi
1642	cp $add_source_path/Makefile .
1643	fi
1644
1645	for dateiname in $AddFilenames
1646	do
1647	if [[ -f $dateiname ]]
1648	then
1649	printf "\n +++ source code file \"$dateiname\" found in additional"
1650	printf "\n source code directory \"$add_source_path\" "
1651	printf "\n but was also given with option \"-s\" which means that it should be taken"
1652	printf "\n from directory \"$source_path\"."
1653	locat=source; exit
1654	fi
1655
1656	cp $add_source_path/$dateiname .
1657	source_list="$source_list $dateiname"
1658
1659	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1660	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1661	then
1662	printf "\n\n +++ user file \"$dateiname\" "
1663	printf "\n is not listed in Makefile \n"
1664	locat=source; exit
1665	else
1666
1667	# Default User-Interface von der Liste entfernen, falls Datei
1668	# ein User-Interface enthaelt
1669	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1670	# then
1671	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1672	# then
1673	# rm -rf user_interface.f90
1674	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1675	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1676	# printf "\n since a user-interface is found in file"
1677	# printf "\n \"$add_source_path/$dateiname\" \n"
1678	# sleep 3
1679	# else
1680	if [[ $found = false ]]
1681	then
1682	found=true
1683	printf "\n\n *** following user file(s) added to the"
1684	printf " files to be translated:\n "
1685	fi
1686	printf "$dateiname "
1687	if [[ $silent == false ]]
1688	then
1689	sleep 0.5
1690	fi
1691
1692	fi
1693	done
1694	[[ $found = true ]] && printf "\n"
1695	cd - > /dev/null
1696	fi
1697	fi
1698
1699
1700	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1701	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1702	if [[ $restart_run != true && -n $package_list ]]
1703	then
1704
1705	cd $source_path
1706
1707	for package in $package_list
1708	do
1709
1710	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1711
1712	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1713	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1714	# LIEFERT
1715	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1716
1717
1718	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1719	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1720	for source_list_name in $package_source_list
1721	do
1722	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1723	then
1724
1725	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1726	ending=`echo $source_list_name \| cut -f2 -d.`
1727	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1728	then
1729	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1730	source_list="$source_list $source_list_name"
1731	fi
1732	fi
1733	done
1734	done
1735
1736	cd - > /dev/null
1737	fi
1738
1739
1740	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1741	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1742	# if [[ "$restart_run" != true ]]
1743	# then
1744	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1745	# if [[ ! -f $makefile ]]
1746	# then
1747	# printf "\n +++ file \"$makefile\" does not exist"
1748	# locat=make; exit
1749	# else
1750	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1751	# fi
1752	# fi
1753
1754	fi # do_compile=true
1755
1756
1757	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1758	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1759	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1760	then
1761
1762	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1763	# ZUSAMMENSETZEN
1764	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1765	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1766	then
1767	cpp_options="${cpp_options},-D__ibm=__ibm"
1768	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1769	then
1770	cpp_options="$cpp_options -D__nec"
1771	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1772	then
1773	cpp_options="$cpp_options -D__lc"
1774	else
1775	cpp_options="$cpp_options -D__$localhost"
1776	fi
1777
1778	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1779	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1780	then
1781	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1782	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1783	else
1784	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1785	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1786	fi
1787
1788	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1789	if [[ -n $package_list ]]
1790	then
1791	for package in $package_list
1792	do
1793	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1794	then
1795	if [[ $package != "dvrp_graphics+1PE" ]]
1796	then
1797	cpp_options="${cpp_options},-D__$package=__$package"
1798	else
1799	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1800	export use_seperate_pe_for_dvrp_output=true
1801	fi
1802	else
1803	if [[ $package != "dvrp_graphics+1PE" ]]
1804	then
1805	cpp_options="$cpp_options -D__$package"
1806	else
1807	cpp_options="$cpp_options -D__dvrp_graphics"
1808	export use_seperate_pe_for_dvrp_output=true
1809	fi
1810	fi
1811	done
1812	fi
1813
1814	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1815	if [[ -n $cpp_opts ]]
1816	then
1817	for popts in $cpp_opts
1818	do
1819	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1820	then
1821	cpp_options="${cpp_options},-D__$popts=__$popts"
1822	else
1823	cpp_options="$cpp_options -D__$popts"
1824	fi
1825	done
1826	fi
1827
1828	else
1829
1830
1831	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1832	if [[ $do_remote = false ]]
1833	then
1834	if [[ ! -f $executable ]]
1835	then
1836	printf "\n +++ executable file: $executable"
1837	printf "\n does not exist"
1838	locat=executable; exit
1839	fi
1840	fi
1841	fi
1842
1843
1844	# JOBMODUS FESTSTELLEN
1845	if [[ "$ENVIRONMENT" = BATCH ]]
1846	then
1847	jobmo=BATCH
1848	else
1849	jobmo=INTERACTIVE
1850	fi
1851
1852
1853	# no interactive runs on lctit
1854	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1855	then
1856	printf "\n +++ no interactive runs allowed on host \"$host\" "
1857	printf "\n please submit batch job using mrun option \"-b\" \n"
1858	locat=normal; exit
1859	fi
1860
1861
1862	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1863	# DURCH BENUTZER ANDERWEITIG VEREINBART
1864	if [[ "$compiler_name" = "" ]]
1865	then
1866
1867	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1868	locat=compiler_name; exit
1869
1870	fi
1871
1872
1873	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1874	[[ $localhost = necriam ]] && compiler_name=mpif90
1875
1876
1877
1878	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1879	kennung=$RANDOM
1880	if [[ "$tmp_user_catalog" = "" ]]
1881	then
1882	if [[ $localhost = ibmh ]]
1883	then
1884	tmp_user_catalog=$SCRATCH
1885	elif [[ $localhost = nech ]]
1886	then
1887	tmp_user_catalog=$WRKSHR
1888	else
1889	tmp_user_catalog=/tmp
1890	fi
1891	fi
1892	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1893
1894
1895	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1896	# BESTIMMEN
1897	if [[ "$tmp_data_catalog" = "" ]]
1898	then
1899	if [[ $localhost = nech ]]
1900	then
1901	tmp_data_catalog=$WRKSHR/mrun_restart_data
1902	else
1903	tmp_data_catalog=/tmp/mrun_restart_data
1904	fi
1905	fi
1906
1907
1908	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1909	# ERSETZEN
1910	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1911	then
1912	eval fopts=\"$fopts\"
1913	eval lopts=\"$lopts\"
1914	fi
1915
1916
1917
1918	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1919	fopts="$fopts $netcdf_inc $dvr_inc"
1920	lopts="$lopts $netcdf_lib $dvr_lib"
1921	ROPTS="$ropts"
1922	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1923	# then
1924	XOPT="-X $numprocs"
1925	# fi
1926
1927
1928
1929	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1930	# GRAMM BENOETIGT
1931	done=false
1932	while [[ $done = false ]]
1933	do
1934	cputime=$cpumax
1935	if (( $cputime == 0 ))
1936	then
1937	if [[ $do_batch = true ]]
1938	then
1939	printf "\n +++ cpu-time is undefined"
1940	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1941	printf "\n >>> "
1942	read cputime 1>/dev/null 2>&1
1943	else
1944	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1945	fi
1946	else
1947	done=true
1948	fi
1949	cpumax=$cputime
1950	done
1951
1952	(( minuten = cputime / 60 ))
1953	(( sekunden = cputime - minuten * 60 ))
1954
1955
1956	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1957	if [[ $do_batch = true ]]
1958	then
1959	done=false
1960	while [[ $done = false ]]
1961	do
1962	if (( memory == 0 ))
1963	then
1964	printf "\n +++ memory demand is undefined"
1965	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1966	printf "\n >>> "
1967	read memory 1>/dev/null 2>&1
1968	else
1969	done=true
1970	fi
1971	done
1972	fi
1973
1974
1975	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1976	if [[ $do_remote = true && -z $remote_username ]]
1977	then
1978	while [[ -z $remote_username ]]
1979	do
1980	printf "\n +++ username on remote host \"$host\" is undefined"
1981	printf "\n >>> Please type username:"
1982	printf "\n >>> "
1983	read remote_username
1984	done
1985	mc="$mc -u$remote_username"
1986	fi
1987
1988	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1989	if [[ "$login_init_cmd" != "" ]]
1990	then
1991	export init_cmds="${login_init_cmd};"
1992	fi
1993
1994
1995	# set module load command and export for subjob
1996	if [[ "$modules" != "" ]]
1997	then
1998	if [[ $host = lctit ]]
1999	then
2000	export module_calls=". $modules"
2001	else
2002	export module_calls="module load ${modules};"
2003	fi
2004	fi
2005
2006	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2007	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2008	then
2009	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2010	then
2011	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2012	fi
2013	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2014	# then
2015	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2016	# echo "*** module_calls = $module_calls"
2017	# fi
2018	fi
2019
2020
2021	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2022	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2023	then
2024	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2025	then
2026	mpilib=mpt
2027	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2028	then
2029	mpilib=mvapich
2030	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2031	then
2032	mpilib=impi
2033	fi
2034	fi
2035
2036
2037
2038	###########################################################################
2039	# HEADER-AUSGABE
2040	###########################################################################
2041
2042
2043	calltime=$(date)
2044	printf "\n"
2045	# [[ $silent = false ]] && clear
2046	printf "#------------------------------------------------------------------------# \n"
2047	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2048	printf "\| \| \n"
2049	spalte1="called on:"; spalte2=$localhost_realname
2050	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2051	if [[ $local_compile = false ]]
2052	then
2053	if [[ $do_remote = true ]]
2054	then
2055	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2056	else
2057	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2058	fi
2059	else
2060	spalte1="compiling test only!"; spalte2=""
2061	fi
2062	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2063	if [[ -n $numprocs ]]
2064	then
2065	if [[ $run_coupled_model = false ]]
2066	then
2067	spalte1="number of PEs:"; spalte2=$numprocs
2068	else
2069	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2070	fi
2071	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2072	fi
2073	if [[ -n $tasks_per_node ]]
2074	then
2075	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2076	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2077	fi
2078	if [[ $maximum_parallel_io_streams != $numprocs ]]
2079	then
2080	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2081	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2082	fi
2083	if [[ $use_openmp = true ]]
2084	then
2085	spalte1="threads per task:"; spalte2="$threads_per_task"
2086	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2087	fi
2088	printf "\| \| \n"
2089	if [[ $do_compile = true ]]
2090	then
2091	if [[ "$mopts" != "" ]]
2092	then
2093	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2094	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2095	zeile=$(echo "$mopts" \| cut -c46-)
2096	while [[ "$zeile" != "" ]]
2097	do
2098	spalte1=""
2099	spalte2=$(echo "$zeile" \| cut -c-45)
2100	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2101	zeile=$(echo "$zeile" \| cut -c46-)
2102	done
2103	fi
2104
2105	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	zeile=$(echo "$cpp_options" \| cut -c46-)
2108	while [[ "$zeile" != "" ]]
2109	do
2110	spalte1=""
2111	spalte2=$(echo "$zeile" \| cut -c-45)
2112	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2113	zeile=$(echo "$zeile" \| cut -c46-)
2114	done
2115
2116	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2117	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2118	zeile=$(echo "$fopts" \| cut -c46-)
2119	while [[ "$zeile" != "" ]]
2120	do
2121	spalte1=""
2122	spalte2=$(echo "$zeile" \| cut -c-45)
2123	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2124	zeile=$(echo "$zeile" \| cut -c46-)
2125	done
2126
2127	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2128	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2129	zeile=$(echo "$lopts" \| cut -c46-)
2130	while [[ "$zeile" != "" ]]
2131	do
2132	spalte1=""
2133	spalte2=$(echo "$zeile" \| cut -c-45)
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	zeile=$(echo "$zeile" \| cut -c46-)
2136	done
2137
2138	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2139	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2140	zeile=$(echo "$modules" \| cut -c46-)
2141	while [[ "$zeile" != "" ]]
2142	do
2143	spalte1=""
2144	spalte2=$(echo "$zeile" \| cut -c-45)
2145	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2146	zeile=$(echo "$zeile" \| cut -c46-)
2147	done
2148
2149	spalte1="main program:"; spalte2=$mainprog
2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2151	else
2152	spalte1=executable:; spalte2=$executable
2153	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2154	fi
2155	printf "\| \| \n"
2156	spalte1="base name of files:"; spalte2=$fname
2157	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2158	if [[ $fname != $afname ]]
2159	then
2160	spalte1="base name of input files:"; spalte2=$afname
2161	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2162	fi
2163	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2164	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2165	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2166	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2167
2168	if [[ "$ocean_file_appendix" = true ]]
2169	then
2170	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2171	fi
2172
2173	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2174	then
2175	spalte1="memory demand / PE":; spalte2="$memory MB"
2176	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2177	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2178	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2179	fi
2180
2181	if [[ $do_compile = true ]]
2182	then
2183	printf "\| \| \n"
2184	printf "\| Files to be compiled: \| \n"
2185	zeile=$source_list
2186	while [[ "$zeile" != "" ]]
2187	do
2188	linestart=$(echo $zeile \| cut -c-70)
2189	printf "\| %-70s \| \n" "$linestart"
2190	zeile=$(echo "$zeile" \| cut -c71-)
2191	done
2192	fi
2193	printf "#------------------------------------------------------------------------#"
2194
2195
2196
2197	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2198	if [[ $do_trace = true ]]
2199	then
2200	(( i = 0 ))
2201	while (( i < iin ))
2202	do
2203	(( i = i + 1 ))
2204	if (( i == 1 ))
2205	then
2206	printf "\n\n >>> INPUT-file assignments:\n"
2207	fi
2208	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2209	done
2210	(( i = 0 ))
2211	while (( i < iout ))
2212	do
2213	(( i = i + 1 ))
2214	if (( i == 1 ))
2215	then
2216	printf "\n\n >>> OUTPUT-file assignments:\n"
2217	fi
2218	printf "\n ${localout[$i]} : ${pathout[$i]}"
2219	done
2220	(( i = 0 ))
2221	while (( i < iic ))
2222	do
2223	(( i = i + 1 ))
2224	if (( i == 1 ))
2225	then
2226	printf "\n\n >>> INPUT-commands:\n"
2227	fi
2228	printf "\n ${in_command[$i]}"
2229	done
2230	(( i = 0 ))
2231	while (( i < ioc ))
2232	do
2233	(( i = i + 1 ))
2234	if (( i == 1 ))
2235	then
2236	printf "\n\n >>> OUTPUT-commands:\n"
2237	fi
2238	printf "\n ${out_command[$i]}"
2239	done
2240	fi
2241
2242
2243	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2244	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2245	then
2246	antwort=dummy
2247	printf "\n\n"
2248	printf " >>> everything o.k. (y/n) ? "
2249	while read antwort
2250	do
2251	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2252	then
2253	printf " >>> everything o.k. (y/n) ? "
2254	else
2255	break
2256	fi
2257	done
2258	if [[ $antwort = n \|\| $antwort = N ]]
2259	then
2260	locat=user_abort; (( iec = 0 )); exit
2261	fi
2262	if [[ $do_batch = true ]]
2263	then
2264	printf " >>> batch-job will be created and submitted"
2265	else
2266	if [[ $local_compile = false ]]
2267	then
2268	printf " >>> MRUN will now continue to execute on this machine"
2269	else
2270	printf " >>> a test compilation will now be carried out on this machine"
2271	fi
2272	fi
2273	fi
2274
2275
2276	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2277	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2278	check_depository="${working_directory}/trunk/UTIL"
2279	check_sources="${working_directory}/tmp_check_namelist_files"
2280	skip_check=false
2281
2282	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2283	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2284	then
2285	skip_check=true
2286	reason="run on remote host or parameter file check has not been compiled."
2287	fi
2288	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2289	then
2290	skip_check=true
2291	reason="parameter file check has not been compiled."
2292	fi
2293
2294	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2295	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2296	then
2297	skip_check=true
2298	reason="serial run."
2299	fi
2300
2301	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2302	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2303	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2304	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2305	if [[ $check_namelist_files == false ]]
2306	then
2307	skip_check=true
2308	reason="-z option set."
2309	fi
2310
2311	if [[ $fromhost != $localhost ]]
2312	then
2313	skip_check=true
2314	reason="submitting host is local host."
2315	fi
2316
2317	if [[ $run_coupled_model == true ]]
2318	then
2319	skip_check=true
2320	reason="coupled run."
2321	fi
2322
2323	if [[ $restart_run == true ]]
2324	then
2325	skip_check=true
2326	reason="restart run."
2327	fi
2328
2329	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2330	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2331	last_char=`echo $filename_input \| cut -c $last_char_int`
2332	if [[ "$last_char" == "f" ]]
2333	then
2334	skip_check=true
2335	reason="restart run."
2336	fi
2337
2338	if [[ $skip_check == false ]]
2339	then
2340	tmp_check=${working_directory}/tmp_check
2341
2342	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2343	# NOT NECESSARILY REQUIRED
2344	line=""
2345	found=false
2346	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2347	while read line1
2348	do
2349	line="$line1"
2350	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2351	then
2352	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2353	found=true
2354	fi
2355	done < $tmp_check
2356
2357	if [[ $found = false ]]
2358	then
2359	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2360	fi
2361
2362	rm -rf ${working_directory}/tmp_check
2363
2364	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2365	for item in $input_list
2366	do
2367	if [[ "$item" == "restart" ]]
2368	then
2369	check_restart=1
2370	else
2371	check_restart=0
2372	fi
2373	done
2374
2375	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2376	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2377	then
2378	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2379	locat=check_namelist; exit
2380	fi
2381
2382	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2383	if [[ $check_restart == 1 ]]
2384	then
2385
2386	filenamef="${filename_input}f"
2387	if [[ ! -f $filenamef ]]
2388	then
2389	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2390	check_restart=0
2391	answer=dummy
2392	printf "\n\n"
2393
2394	if [[ $silent == false ]]
2395	then
2396	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2397	do
2398	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2399	read answer
2400	done
2401	if [[ $answer = a \|\| $answer = A ]]
2402	then
2403	printf "\n +++ Aborting...."
2404	locat=normal; exit
2405	fi
2406	fi
2407	else
2408	check_restart=1
2409	fi
2410	fi
2411
2412	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2413	mkdir $check_sources
2414	cd $check_sources
2415
2416
2417	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2418	if [[ -d $add_source_path ]]
2419	then
2420	printf "\n\n *** copying files from $check_depository"
2421	cp $check_depository/check_namelist_files.tar ./
2422
2423	printf "\n\n *** untar of makefile and source files in $check_sources"
2424	tar -xf check_namelist_files.tar > /dev/null 2>&1
2425
2426	printf "\n\n *** adding user code."
2427	cp $add_source_path/* ./
2428	touch check_namelist_files.f90
2429
2430	# GET COMPILER OPTIONS AND PERFORM MAKE
2431	printf "\n\n *** compiling code if necessary...\n"
2432
2433	# workaround for batch jobs on local machine (lcxe6)
2434	if [[ $do_batch == true && $do_remote == false ]]
2435	then
2436	eval $init_cmds
2437	fi
2438
2439	# GET CHECK OPTIONS
2440	line=""
2441	found=false
2442
2443	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2444
2445	while read line1
2446	do
2447
2448	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2449	then
2450	line="$line1"
2451	fi
2452
2453	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2454	then
2455	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2456	line="$line "
2457	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2458	found=true
2459	fi
2460
2461	done < $tmp_check
2462	copts_check="$copts_check -D__check -D__parallel"
2463
2464	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2465
2466	# GET MAKE OUTPUT
2467	if [[ $? != 0 ]]
2468	then
2469	printf "\n +++ error during make."
2470	answer=dummy
2471	printf "\n\n"
2472	if [[ $silent == false ]]
2473	then
2474	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2475	do
2476	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2477	read answer
2478	done
2479	if [[ $answer = a \|\| $answer = A ]]
2480	then
2481	printf "\n +++ Aborting..."
2482	rm -rf $check_sources
2483	locat=normal; exit
2484	else
2485	skip_check=true
2486	fi
2487	else
2488	skip_check=true
2489	fi
2490	fi
2491	else
2492	cp $PALM_BIN/check_namelist_files.x ./
2493	fi
2494
2495	cp $filename_input ./PARIN
2496	if [[ $check_restart == 1 ]]
2497	then
2498	cp $filenamef ./PARINF
2499	fi
2500
2501	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2502	then
2503	printf "\n *** adding topography data"
2504	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2505
2506	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2507	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2508	# WHICH REQUIRE SUFFICIENT MEMORY
2509	ulimit -s unlimited
2510	fi
2511
2512	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2513	cat > ENVPAR << %%END%%
2514	&envpar run_identifier = '$fname', host = '$host',
2515	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2516	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2517	maximum_cpu_time_allowed = ${cpumax}.,
2518	revision = '$global_revision',
2519	local_dvrserver_running = $local_dvrserver_running /
2520
2521	%%END%%
2522
2523	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2524	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2525	then
2526	printf "\n +++ WARNING: check_namelist_files.x not found."
2527	answer=dummy
2528	printf "\n\n"
2529
2530	if [[ $silent == false ]]
2531	then
2532	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2533	do
2534	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2535	read answer
2536	done
2537	if [[ $answer = a \|\| $answer = A ]]
2538	then
2539	printf "\n +++ Aborting..."
2540	rm -rf $check_sources
2541	locat=normal; exit
2542	else
2543	printf "\n *** skipping parameter file check."
2544	fi
2545	fi
2546
2547	elif [[ $skip_check == false ]]
2548	then
2549	# STARTING THE PARAMETER FILE CHECK
2550	printf "\n\n *** starting parameter file check..."
2551
2552	# CHECKING THE P3D FILE
2553	printf "\n\n (1) checking $filename_input"
2554	echo "$numprocs 0 0" > VARIN
2555	errors=`./check_namelist_files.x < VARIN 2>&1`
2556
2557	check_error=false
2558	if [[ "$errors" == "" ]]
2559	then
2560	printf " --> o.k."
2561	else
2562	printf " --> failed."
2563	check_error=true
2564	printf "\n\n $errors"
2565	fi
2566
2567	# CHECKING THE PD3F FILE IF NECESSARY
2568	if [[ $check_restart == 1 && $check_error == false ]]
2569	then
2570	printf "\n\n (2) checking $filenamef"
2571
2572	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2573	# IN &INIPAR LIST
2574	found=false
2575	cat PARINF \| while read line
2576	do
2577	line=$(echo $line\|sed 's/ //g')
2578	if [[ $line == "&inipar" ]]
2579	then
2580	start_search=true
2581	fi
2582
2583	if [[ $start_search == true ]]
2584	then
2585	if [[ $line == "initializing_actions='read_restart_data'" ]]
2586	then
2587	found=true
2588	break
2589	fi
2590	fi
2591
2592	if [[ $line == "/" ]]
2593	then
2594	start_search=false
2595	fi
2596
2597	done
2598
2599	if [[ $found = false ]]
2600	then
2601	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2602	printf "\n in &inipar list in $fname$p3df_suffix."
2603	rm -rf $check_sources
2604	locat=check_namelist; exit
2605	fi
2606
2607	# READ max_user_pr FROM FILES
2608	if [[ -f parin_for_check ]]
2609	then
2610	read max_pr_user < parin_for_check
2611	else
2612	max_user_pr=0
2613	fi
2614
2615	echo "$numprocs 1 $max_pr_user" > VARIN
2616	errors=`./check_namelist_files.x < VARIN 2>&1`
2617
2618	if [[ "$errors" == "" ]]
2619	then
2620	printf " --> o.k."
2621	else
2622	printf " --> failed."
2623	check_error=true
2624	printf "\n\n $errors"
2625	fi
2626	fi
2627
2628	# REPORT ERRORS AND CONTINUE/EXIT
2629	if [[ $check_error == true ]]
2630	then
2631	printf "\n +++ errors found in the parameter file!\n"
2632	answer=dummy
2633	printf "\n\n"
2634
2635	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2636	do
2637	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2638	read answer
2639	done
2640
2641	if [[ $answer = a \|\| $answer = A ]]
2642	then
2643	printf "\n +++ Aborting..."
2644	rm -rf $check_sources
2645	locat=normal; exit
2646	fi
2647	else
2648	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2649	fi
2650	rm -rf $check_sources
2651	fi
2652	else
2653	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2654	fi
2655
2656	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2657	rm -rf $check_sources
2658	cd $working_directory
2659
2660
2661	# DETERMINE PATH FOR MAKE DEPOSITORY
2662	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2663	then
2664
2665	line=""
2666	grep "%depository_path" $config_file > tmp_mrun
2667	while read line
2668	do
2669	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2670	then
2671	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2672	then
2673	global_depository_path=`echo $line \| cut -d" " -s -f2`
2674	fi
2675	fi
2676	done < tmp_mrun
2677
2678	line=""
2679	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2680	while read line
2681	do
2682	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2683	then
2684	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2685	then
2686	local_depository_path=`echo $line \| cut -d" " -s -f2`
2687	fi
2688	fi
2689	done < tmp_mrun
2690
2691	if [[ "$local_depository_path" = "" ]]
2692	then
2693	if [[ "$global_depository_path" != "" ]]
2694	then
2695	local_depository_path=$global_depository_path
2696	else
2697	printf "\n\n +++ no depository path found in configuration file"
2698	printf "\n for local host \"$localhost\" "
2699	printf "\n please set \"\%depository_path\" in configuration file\n"
2700	locat=config_file; exit
2701	fi
2702	fi
2703	eval local_depository_path=$local_depository_path
2704	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2705	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2706
2707
2708	basename=`echo $mainprog \| cut -f1 -d"."`
2709	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2710	if [[ ! -f $make_depository ]]
2711	then
2712	printf "\n"
2713	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2714	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2715	fi
2716
2717	fi
2718
2719
2720	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2721	# CHENDE AKTIONEN DURCHGEFUEHRT
2722	if [[ $do_batch = false ]]
2723	then
2724
2725
2726	# TEMPORAEREN KATALOG ERZEUGEN
2727	mkdir -p $TEMPDIR
2728	chmod go+rx $TEMPDIR
2729	tmpcreate=true
2730
2731
2732	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2733	# TEMPORAERES VERZEICHNIS KOPIEREN
2734	if [[ $do_compile = true ]]
2735	then
2736
2737	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2738	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2739	if [[ $localhost = nech ]]
2740	then
2741	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2742	if mkdir -p $TEMPDIR_COMPILE
2743	then
2744	printf "\n *** \"$TEMPDIR_COMPILE\" "
2745	printf "\n is generated as temporary directory for cross compiling\n"
2746	else
2747	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2748	printf "\n needed for cross compilation failed"
2749	locat=compile
2750	exit
2751	fi
2752	else
2753	TEMPDIR_COMPILE=$TEMPDIR
2754	fi
2755
2756	cp $make_depository $TEMPDIR_COMPILE
2757	cd $TEMPDIR_COMPILE
2758	tar -xf $make_depository > /dev/null 2>&1
2759	cd - > /dev/null
2760
2761	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2762
2763	else
2764
2765	cp $executable ${TEMPDIR}/a.out
2766
2767	fi
2768
2769
2770	# WECHSEL IN TEMPORAEREN KATALOG
2771	cd $TEMPDIR
2772	printf "\n *** changed to temporary directory: $TEMPDIR"
2773
2774
2775	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2776	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2777	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2778	# ERMITTELN
2779	(( i = 0 ))
2780	while (( i < iout ))
2781	do
2782	(( i = i + 1 ))
2783	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2784	then
2785	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2786	else
2787	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2788	fi
2789	done
2790
2791
2792	# IF REQUIRED, START WITH COMPILING ACTIONS
2793	if [[ $do_compile = true ]]
2794	then
2795
2796
2797	if [[ -f a.out ]]
2798	then
2799
2800	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2801	printf "\n\n\n *** executable a.out found"
2802	printf "\n no compilation required \n"
2803
2804	else
2805
2806	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2807	printf "\n\n\n *** compilation starts \n$striche\n"
2808	printf " *** compilation with make using following options:\n"
2809	printf " make depository: $make_depository"
2810	if [[ "$mopts" != "" ]]
2811	then
2812	printf " make options: $mopts\n"
2813	fi
2814	printf " compilername: $compiler_name\n"
2815	printf " compiler options: $fopts\n"
2816	printf " preprocessor directives: $cpp_options \n"
2817	printf " linker options: $lopts \n"
2818	if [[ "$modules" != "" ]]
2819	then
2820	printf " modules to be load: $modules \n"
2821	fi
2822	printf " source code files: $source_list \n"
2823
2824	if [[ $localhost = nech ]]
2825	then
2826	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2827	cp $TEMPDIR_COMPILE/a.out .
2828	[[ $? != 0 ]] && compile_error=true
2829	rm -rf $TEMPDIR_COMPILE
2830	elif [[ $localhost = ibmh ]]
2831	then
2832	printf " compiler is called via ssh on \"plogin1\" \n"
2833	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2834	[[ ! -f a.out ]] && compile_error=true
2835	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2836	elif [[ $localhost = lcsgib ]]
2837	then
2838	printf " compiler is called via ssh on \"bicegate0\" \n"
2839	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2840	[[ ! -f a.out ]] && compile_error=true
2841	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2842	elif [[ $localhost = lcsgih ]]
2843	then
2844	printf " compiler is called via ssh on \"hicegate0\" \n"
2845	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2846	[[ ! -f a.out ]] && compile_error=true
2847	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2848	elif [[ $localhost = lcflow ]]
2849	then
2850	printf " compiler is called via ssh on \"flow\" \n"
2851	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2852	[[ ! -f a.out ]] && compile_error=true
2853	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2854	elif [[ $localhost = lccrayf ]]
2855	then
2856	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2857	else
2858	[[ "$init_cmds" != "" ]] && eval $init_cmds
2859	[[ "$module_calls" != "" ]] && eval $module_calls
2860	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2861	fi
2862
2863	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2864	then
2865	printf "\n +++ error occured while compiling or linking"
2866	locat=compile
2867
2868	exit
2869	else
2870	printf "$striche\n *** compilation finished \n"
2871	fi
2872
2873	fi
2874
2875	fi
2876
2877
2878	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2879	if [[ $local_compile = true ]]
2880	then
2881	cd $HOME
2882	rm -rf $TEMPDIR
2883	locat=local_compile; exit
2884	fi
2885
2886
2887	# BEREITSTELLEN DER INPUT-DATEIEN
2888	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2889	(( i = 0 ))
2890	while (( i < iin ))
2891	do
2892	(( i = i + 1 ))
2893	if (( i == 1 ))
2894	then
2895	printf "\n\n *** providing INPUT-files:\n$striche"
2896	fi
2897
2898
2899	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2900	if [[ "${transin[$i]}" = unavailable ]]
2901	then
2902	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2903	then
2904	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2905	printf "\n is not available!"
2906	else
2907	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2908	printf "\n is not available!"
2909	fi
2910	continue
2911	fi
2912
2913	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2914	files_for_pes=false; datentyp=file
2915	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2916	then
2917	files_for_pes=true; datentyp=directory
2918	actionin[$i]=""
2919	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2920	then
2921	actionin[$i]=""
2922	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2923	then
2924	files_for_pes=true; datentyp=directory
2925	actionin[$i]="ar"
2926	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2927	then
2928	actionin[$i]="ar"
2929	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2930	then
2931	files_for_pes=true; datentyp=directory
2932	actionin[$i]="fl"
2933	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2934	then
2935	actionin[$i]="fl"
2936	fi
2937
2938	if [[ $files_for_pes = true ]]
2939	then
2940	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2941	else
2942	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2943	fi
2944
2945	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2946	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2947	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2948	# SERVER ZU HOLEN
2949	if [[ "${actionin[$i]}" = fl ]]
2950	then
2951	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2952	if [[ $files_for_pes = false ]]
2953	then
2954	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2955	then
2956	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2957	got_tmp[$i]=true
2958	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2959	then
2960	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2961	printf "\n *** trying to use backup copy in \"$WORK\" "
2962	cp $WORK/${frelin[$i]} ${localin[$i]}
2963	else
2964	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2965	printf "\n or \"$tmp_data_catalog\" does not exist!"
2966	printf "\n *** trying to get copy from archive"
2967	actionin[$i]=ar
2968	fi
2969	else
2970	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2971	then
2972	mkdir ${localin[$i]}
2973	cd $tmp_data_catalog/${frelin[$i]}
2974	for file in $(ls *)
2975	do
2976	ln $file $TEMPDIR/${localin[$i]}
2977	done
2978	cd $TEMPDIR
2979	got_tmp[$i]=true
2980	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2981	then
2982	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2983	printf "\n *** trying to use backup copy in \"$WORK\" "
2984	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2985	else
2986	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2987	printf "\n or \"$tmp_data_catalog\" does not exist!"
2988	printf "\n *** trying to get copy from archive"
2989	actionin[$i]=ar
2990	fi
2991	fi
2992	fi
2993
2994
2995	# DATEI LIEGT AUF ARCHIV-SERVER
2996	if [[ "${actionin[$i]}" = ar ]]
2997	then
2998
2999	if [[ $files_for_pes = false ]]
3000	then
3001	printf "\n file will be restored from archive-system ($archive_system)!"
3002	else
3003	printf "\n directory will be restored from archive-system ($archive_system)!"
3004	fi
3005
3006	file_restored=false
3007
3008	if [[ $archive_system = asterix ]]
3009	then
3010	do_stagein=true
3011	(( stagein_anz = 0 ))
3012	while [[ $do_stagein = true ]]
3013	do
3014	if [[ $files_for_pes = false ]]
3015	then
3016	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3017	else
3018	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3019	fi
3020	cat STAGEIN_OUTPUT
3021	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3022	then
3023	file_restored=true
3024	do_stagein=false
3025	else
3026	(( stagein_anz = stagein_anz + 1 ))
3027	if (( stagein_anz == 10 ))
3028	then
3029	printf "\n +++ stagein stoped after 10 tries"
3030	locat=stage
3031	exit
3032	fi
3033	printf "\n +++ restoring from archive failed, trying again:"
3034	sleep 900
3035	fi
3036	done
3037	elif [[ $archive_system = DMF ]]
3038	then
3039	if [[ $files_for_pes = false ]]
3040	then
3041	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3042	locat=DMF
3043	exit
3044	else
3045	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3046	cp -r $ARCHIVE/${frelin[$i]} $PWD
3047	file_restored=true
3048	fi
3049	elif [[ $archive_system = tivoli ]]
3050	then
3051	if [[ $files_for_pes = false ]]
3052	then
3053	if [[ $localhost = lcsgih ]]
3054	then
3055	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3056	else
3057	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3058	fi
3059	else
3060	(( inode = 0 ))
3061	while (( inode < nodes ))
3062	do
3063	if [[ $localhost = lcsgih ]]
3064	then
3065	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3066	else
3067	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3068	fi
3069	(( inode = inode + 1 ))
3070	done
3071	fi
3072	file_restored=true
3073	elif [[ $archive_system = ut ]]
3074	then
3075	if [[ $files_for_pes = false ]]
3076	then
3077	cp $UT/${frelin[$i]} .
3078	else
3079	(( inode = 0 ))
3080	while (( inode < nodes ))
3081	do
3082	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3083	(( inode = inode + 1 ))
3084	done
3085	fi
3086	file_restored=true
3087	else
3088	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3089	locat=rearchive
3090	exit
3091	fi
3092
3093	if [[ $file_restored = true ]]
3094	then
3095
3096	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3097	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3098	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3099	if [[ $files_for_pes = false ]]
3100	then
3101	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3102	else
3103	mkdir $tmp_data_catalog/${frelin[$i]}
3104	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3105	fi
3106	got_tmp[$i]=true
3107
3108	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3109	mv ${frelin[$i]} ${localin[$i]}
3110
3111	fi
3112	fi
3113
3114
3115	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3116	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3117	then
3118
3119	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3120	then
3121
3122	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3123	printf "\n file will be provided for $numprocs processors"
3124	mkdir ${localin[$i]}
3125	ival=$numprocs
3126	(( ii = 0 ))
3127	while (( ii <= ival-1 ))
3128	do
3129	if (( ii < 10 ))
3130	then
3131	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3132	elif (( ii < 100 ))
3133	then
3134	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3135	elif (( ii < 1000 ))
3136	then
3137	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3138	else
3139	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3140	fi
3141	(( ii = ii + 1 ))
3142	done
3143
3144	else
3145
3146	if [[ $files_for_pes = true ]]
3147	then
3148
3149	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3150	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3151	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3152	# PER MOVE UMBENANNT WERDEN
3153	printf "\n providing $numprocs files for the respective processors"
3154	mkdir ${localin[$i]}
3155	if [[ $link_local_input = true ]]
3156	then
3157	printf " using ln -f\n"
3158	cd ${absnamein[$i]}
3159	for file in $(ls *)
3160	do
3161	ln -f $file ${localin[$i]}
3162	done
3163	cd $TEMPDIR
3164	fi
3165	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3166	if [[ ! -f "${localin[$i]}/_0000" ]]
3167	then
3168	if [[ $link_local_input = true ]]
3169	then
3170	printf " ln failed for .../_0000, using cp...\n"
3171	fi
3172	cp -r ${absnamein[$i]}/* ${localin[$i]}
3173	fi
3174
3175	else
3176	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3177	if [[ $link_local_input = true ]]
3178	then
3179	printf " using ln -f\n"
3180	ln -f ${absnamein[$i]} ${localin[$i]}
3181	fi
3182	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3183	if [[ ! -f "${localin[$i]}" ]]
3184	then
3185	if [[ $link_local_input = true ]]
3186	then
3187	printf " ln failed, using cp...\n"
3188	fi
3189	cp ${absnamein[$i]} ${localin[$i]}
3190	fi
3191	fi
3192	fi
3193	fi
3194
3195	done
3196	if (( i != 0 ))
3197	then
3198	printf "\n$striche\n *** all INPUT-files provided \n"
3199	fi
3200
3201
3202	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3203	(( i = 0 ))
3204	while (( i < iic ))
3205	do
3206	(( i = i + 1 ))
3207	if (( i == 1 ))
3208	then
3209	printf "\n\n *** execution of INPUT-commands:\n$striche"
3210	fi
3211	printf "\n >>> ${in_command[$i]}"
3212	eval ${in_command[$i]}
3213	if (( i == iic ))
3214	then
3215	printf "\n$striche\n"
3216	fi
3217	done
3218
3219
3220	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3221	cpurest=${cpumax}.
3222
3223
3224	# START DVR STREAMING SERVER
3225	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3226	then
3227	if [[ "$dvr_server" != "" ]]
3228	then
3229
3230	printf "\n\n *** preparing the dvr streaming server configuration file"
3231
3232	# Check, if a dvr server is already running
3233	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3234	if [[ "$running_dvrserver_id" != "" ]]
3235	then
3236
3237	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3238	printf "\n This server is used instead starting a new one!"
3239	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3240
3241	else
3242
3243	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3244	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3245	then
3246	cp ${PALM_BIN}/.dvrserver.config .
3247
3248	# Entering the BASEDIR, UID and GID into this file
3249	user_id=`id -u`
3250	group_id=`id -g`
3251	# & is needed as seperator, because TEMPDIR contains /
3252	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3253	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3254	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3255	mv .dvrserver.3 .dvrserver.config
3256	rm .dvrserver.1 .dvrserver.2
3257
3258	# Start dvr server in background, get his id and print on terminal
3259	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3260	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3261	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3262	local_dvrserver_running=.TRUE.
3263	else
3264	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3265	printf "\n \"$PALM_BIN\" "
3266	locat=dvr
3267	exit
3268	fi
3269
3270	fi
3271
3272	else
3273	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3274	fi
3275	fi
3276
3277
3278	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3279	# LESEN VON PALM)
3280	cat > ENVPAR << %%END%%
3281	&envpar run_identifier = '$fname', host = '$localhost',
3282	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3283	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3284	maximum_cpu_time_allowed = ${cpumax}.,
3285	revision = '$global_revision',
3286	local_dvrserver_running = $local_dvrserver_running /
3287
3288	%%END%%
3289
3290
3291	# PROGRAMMSTART
3292	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3293	PATH=$PATH:$TEMPDIR
3294
3295	# MPI debug option (argument checking, slows down execution due to increased latency)
3296	if [[ "$mpi_debug" = true ]]
3297	then
3298	export MPI_CHECK_ARGS=1
3299	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3300	fi
3301
3302	if [[ "$totalview" = true ]]
3303	then
3304	printf "\n *** totalview debugger will be used"
3305	tv_opt="-tv"
3306	else
3307	tv_opt=""
3308	fi
3309
3310	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3311	then
3312	if [[ "$ENVIRONMENT" = BATCH ]]
3313	then
3314	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3315	then
3316	printf "\n +++ debug is allowed in interactive mode only"
3317	locat=debug
3318	exit
3319	fi
3320	fi
3321	if [[ $localhost = ibmh ]]
3322	then
3323
3324	# SETUP THE IBM MPI ENVIRONMENT
3325	export MP_SHARED_MEMORY=yes
3326	export AIXTHREADS_SCOPE=S
3327	export OMP_NUM_THREADS=$threads_per_task
3328	export AUTHSTATE=files
3329	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3330
3331	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3332	export MP_ADAPTER_USE=shared
3333	export MP_CPU_USE=multiple
3334	export MP_TIMEOUT=1200
3335
3336	unset MP_TASK_AFFINITY
3337
3338	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3339	#(( ii = 1 ))
3340	#while (( ii <= $numprocs ))
3341	#do
3342	# echo $localhost_realname >> hostfile
3343	# (( ii = ii + 1 ))
3344	#done
3345	#export MP_HOSTFILE=hostfile
3346
3347	if [[ "$LOADLBATCH" = yes ]]
3348	then
3349	totalview poe a.out $ROPTS
3350	else
3351	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3352	export TVDSVRLAUNCHCMD=ssh
3353	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3354	fi
3355	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3356	then
3357	# CURRENTLY NO DEBUGGER ON LCSGI
3358	if [[ $run_coupled_model = true ]]
3359	then
3360	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3361	locat=debug
3362	exit
3363	else
3364	echo "no_coupling" > runfile_atmos
3365	fi
3366	(( ii = $numprocs / $threads_per_task ))
3367	export OMP_NUM_THREADS=$threads_per_task
3368	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3369	if [[ $threads_per_task != 1 ]]
3370	then
3371	printf "\n threads per task: $threads_per_task"
3372	fi
3373	printf "\n\n"
3374	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3375	then
3376	# export MPI_LAUNCH_TIMEOUT=360
3377	if [[ "$totalview" = true ]]
3378	then
3379	printf "\n running totalview debugger"
3380	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3381	else
3382	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3383	fi
3384	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3385	then
3386	# ulimit -s 300000 # A too large stack size causes problems
3387	# export MV2_NUM_PORTS=2
3388	# export MV2_CPU_MAPPING=0:1:2:3
3389	if [[ "$totalview" = true ]]
3390	then
3391	printf "\n running totalview debugger"
3392	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3393	else
3394	mpiexec ./a.out $ROPTS < runfile_atmos
3395	fi
3396	fi
3397	else
3398	printf "\n +++ no debug available on \"$localhost\" "
3399	printf "\n or not implemented in mrun so far"
3400	locat=debug
3401	exit
3402	fi
3403
3404	# end debug mode
3405	else
3406
3407	# normal execution
3408	if [[ -n $numprocs ]]
3409	then
3410	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3411	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3412	then
3413	# SETUP THE IBM MPI ENVIRONMENT
3414	if [[ $host != ibmh && $host != ibmkisti ]]
3415	then
3416	export MP_SHARED_MEMORY=yes
3417	export AIXTHREAD_SCOPE=S
3418	export OMP_NUM_THREADS=$threads_per_task
3419	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3420	export AUTHSTATE=files
3421	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3422	# export MP_PRINTENV=yes
3423
3424	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3425	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3426	export MP_WAIT_MODE=poll
3427	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3428	fi
3429
3430	if [[ $host = ibmkisti ]]
3431	then
3432	export LANG=en_US
3433	export MP_SHARED_MEMORY=yes
3434	if [[ $threads_per_task = 1 ]]
3435	then
3436	export MP_SINGLE_THREAD=yes
3437	export MEMORY_AFFINITY=MCM
3438	else
3439	export OMP_NUM_THREADS=$threads_per_task
3440	fi
3441	fi
3442
3443	if [[ "$LOADLBATCH" = yes ]]
3444	then
3445	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3446	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3447	then
3448	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3449	else
3450	if [[ $run_coupled_model = false ]]
3451	then
3452	if [[ "$ocean_file_appendix" = true ]]
3453	then
3454	echo "precursor_ocean" > runfile_atmos
3455	else
3456	echo "precursor_atmos" > runfile_atmos
3457	fi
3458	else
3459	(( iia = $numprocs_atmos / $threads_per_task ))
3460	(( iio = $numprocs_ocean / $threads_per_task ))
3461	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3462	printf "\n using $coupled_mode coupling"
3463	printf "\n\n"
3464	echo "coupled_run $iia $iio" > runfile_atmos
3465	fi
3466	poe ./a.out $ROPTS < runfile_atmos
3467	fi
3468	else
3469	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3470	then
3471	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3472	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3473	then
3474	if [[ -f $hostfile ]]
3475	then
3476	cp $hostfile hostfile
3477	else
3478	(( ii = 1 ))
3479	while (( ii <= $numprocs ))
3480	do
3481	echo $localhost_realname >> hostfile
3482	(( ii = ii + 1 ))
3483	done
3484	fi
3485	export MP_HOSTFILE=hostfile
3486	if [[ $run_coupled_model = false ]]
3487	then
3488	if [[ "$ocean_file_appendix" = true ]]
3489	then
3490	echo "precursor_ocean" > runfile_atmos
3491	else
3492	echo "precursor_atmos" > runfile_atmos
3493	fi
3494	else
3495	(( iia = $numprocs_atmos / $threads_per_task ))
3496	(( iio = $numprocs_ocean / $threads_per_task ))
3497	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3498	printf "\n using $coupled_mode coupling"
3499	printf "\n\n"
3500	echo "coupled_run $iia $iio" > runfile_atmos
3501	fi
3502	if [[ $localhost = ibmy ]]
3503	then
3504	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3505	else
3506	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3507	fi
3508
3509	else
3510	if [[ "$host_file" = "" ]]
3511	then
3512	printf "\n +++ no hostfile given in configuration file"
3513	locat=config_file
3514	exit
3515	else
3516	eval host_file=$host_file
3517	fi
3518	export MP_HOSTFILE=$host_file
3519	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3520	fi
3521	fi
3522	elif [[ $host = nech \|\| $host = necriam ]]
3523	then
3524	(( ii = nodes ))
3525	if [[ $ii = 1 ]]
3526	then
3527	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3528	export MPIPROGINF=YES
3529	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3530	echo "*** execution on single node with mpirun"
3531	mpirun -np $numprocs ./a.out $ROPTS
3532	else
3533	(( i = 0 ))
3534	while (( i < ii ))
3535	do
3536	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3537	(( i = i + 1 ))
3538	done
3539
3540	echo "#!/bin/sh" > mpi_exec_shell
3541	echo " " >> mpi_exec_shell
3542	echo "set -u" >> mpi_exec_shell
3543	echo "F_ERRCNT=0" >> mpi_exec_shell
3544	echo "MPIPROGINV=YES" >> mpi_exec_shell
3545	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3546	echo "cpurest=$cpurest" >> mpi_exec_shell
3547	echo "fname=$fname" >> mpi_exec_shell
3548	echo "localhost=$localhost" >> mpi_exec_shell
3549	echo "return_addres=$return_addres" >> mpi_exec_shell
3550	echo "return_username=$return_username" >> mpi_exec_shell
3551	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3552	echo "write_binary=$write_binary" >> mpi_exec_shell
3553	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3554	echo " " >> mpi_exec_shell
3555	echo "export F_ERRCNT" >> mpi_exec_shell
3556	echo "export MPIPROGINV" >> mpi_exec_shell
3557	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3558	echo "export cpurest" >> mpi_exec_shell
3559	echo "export fname" >> mpi_exec_shell
3560	echo "export localhost" >> mpi_exec_shell
3561	echo "export return_addres" >> mpi_exec_shell
3562	echo "export return_username" >> mpi_exec_shell
3563	echo "export tasks_per_node" >> mpi_exec_shell
3564	echo "export write_binary" >> mpi_exec_shell
3565	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3566	echo " " >> mpi_exec_shell
3567	echo "exec ./a.out" >> mpi_exec_shell
3568
3569	chmod u+x mpi_exec_shell
3570	export MPIPROGINF=YES
3571	mpirun -f multinode_config &
3572	wait
3573
3574	fi
3575	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3576	then
3577
3578	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3579	# DOES NOT EXIST
3580	if [[ $host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3581	then
3582	if [[ -f $hostfile ]]
3583	then
3584	cp $hostfile hostfile
3585	(( ii = $numprocs / $threads_per_task ))
3586	else
3587	(( ii = 1 ))
3588	while (( ii <= $numprocs / $threads_per_task ))
3589	do
3590	echo $localhost_realname >> hostfile
3591	(( ii = ii + 1 ))
3592	done
3593	fi
3594	eval zeile=\"`head -n $ii hostfile`\"
3595	printf "\n *** running on: $zeile"
3596	fi
3597
3598	(( ii = $numprocs / $threads_per_task ))
3599	export OMP_NUM_THREADS=$threads_per_task
3600	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3601	if [[ $threads_per_task != 1 ]]
3602	then
3603	# increase stack size to unlimited, because large runs
3604	# may abort otherwise
3605	ulimit -Ss unlimited
3606	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3607	fi
3608	if [[ $run_coupled_model = false ]]
3609	then
3610	if [[ "$ocean_file_appendix" = true ]]
3611	then
3612	echo "precursor_ocean" > runfile_atmos
3613	else
3614	echo "precursor_atmos" > runfile_atmos
3615	fi
3616	printf "\n\n"
3617	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3618	then
3619	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3620	then
3621	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3622	# export MPI_DSM_DISTRIBUTE=1
3623	# MPI_DSM_CPULIST: pin MPI processes to cores
3624	if [[ $use_openmp = false ]]
3625	then
3626	if [[ "$sgi_feature" = ice2 ]]
3627	then
3628	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3629	else
3630	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3631	fi
3632	else
3633	unset MPI_DSM_CPULIST
3634	fi
3635	# MPI_IB_RAILS: use both IB rails on ICE2
3636	export MPI_BUFS_PER_HOST=512
3637	export MPI_IB_RAILS=2
3638	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3639	export MPI_CONNECTIONS_THRESHOLD=8192
3640	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3641	export MPI_TYPE_DEPTH=20
3642	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3643	export MPI_GROUP_MAX=64
3644	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3645	if [[ $use_openmp = true ]]
3646	then
3647	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3648	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3649	else
3650	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3651	fi
3652
3653	# next is test for openmp usage
3654	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3655	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3656	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3657	then
3658	export MV2_NUM_PORTS=2
3659	# The default setting of MV2_CPU_MAPPING gives best results
3660	# export MV2_ENABLE_AFFINITY=1
3661	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3662	# if [[ "$sgi_feature" = ice2 ]]
3663	# then
3664	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3665	# else
3666	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3667	# fi
3668	if [[ $use_openmp = true ]]
3669	then
3670	unset MV2_CPU_MAPPING
3671	export MV2_ENABLE_AFFINITY=0
3672	fi
3673	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3674	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3675	if [[ $use_openmp = true ]]
3676	then
3677	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3678	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3679	else
3680	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3681	fi
3682	elif [[ "$mpilib" = impi ]]
3683	then
3684	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3685	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3686	fi
3687	elif [[ $host = lccrayf ]]
3688	then
3689	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3690	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3691	then
3692	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3693	elif [[ $host = lcflow ]]
3694	then
3695	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3696	elif [[ $host = lcsb ]]
3697	then
3698	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3699	elif [[ $host = lckiaps ]]
3700	then
3701	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3702	elif [[ $host = lckyu* ]]
3703	then
3704	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3705	else
3706	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3707	fi
3708	else
3709
3710	# currently there is no full MPI-2 support on ICE and XT4
3711	(( iia = $numprocs_atmos / $threads_per_task ))
3712	(( iio = $numprocs_ocean / $threads_per_task ))
3713	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3714	printf "\n using $coupled_mode coupling"
3715	printf "\n\n"
3716
3717	if [[ $coupled_mode = "mpi2" ]]
3718	then
3719	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3720	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3721	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3722	then
3723
3724	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3725	then
3726	# export MPI_LAUNCH_TIMEOUT=360
3727	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3728	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3729	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3730	then
3731	# ulimit -s 300000 # A too large stack size causes problems
3732	# export MV2_NUM_PORTS=2
3733	# export MV2_CPU_MAPPING=0:1:2:3
3734	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3735	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3736	fi
3737
3738	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3739	then
3740
3741	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3742	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3743
3744	else
3745	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3746	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3747	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3748	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3749	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3750	fi
3751	wait
3752
3753	else
3754
3755	echo "coupled_run $iia $iio" > runfile_atmos
3756	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3757	then
3758
3759	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3760	then
3761	# export MPI_LAUNCH_TIMEOUT=360
3762	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3763	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3764	then
3765	# ulimit -s 300000 # A too large stack size causes problems
3766	# export MV2_NUM_PORTS=2
3767	# export MV2_CPU_MAPPING=0:1:2:3
3768	mpiexec ./a.out $ROPTS < runfile_atmos
3769	fi
3770
3771	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3772	then
3773
3774	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3775
3776	elif [[ $host = lck \|\| $host = lckordi ]]
3777	then
3778
3779	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3780
3781	elif [[ $host = lckyu* ]]
3782	then
3783
3784	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3785
3786	fi
3787	wait
3788	fi
3789
3790	fi
3791	elif [[ $host = lckyoto ]]
3792	then
3793	set -xv
3794	export P4_RSHCOMMAND=plesh
3795	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3796	if [[ "$ENVIRONMENT" = BATCH ]]
3797	then
3798	if [[ "$cond2" = fujitsu ]]
3799	then
3800	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3801	elif [[ "cond2" = pgi ]]
3802	then
3803	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3804	else
3805	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3806	fi
3807	else
3808	if [[ "$cond2" = "" ]]
3809	then
3810	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3811	else
3812	mpirun -np $numprocs ./a.out $ROPTS
3813	fi
3814	fi
3815	set +xv
3816	elif [[ $host = lctit ]]
3817	then
3818	export OMP_NUM_THREADS=$threads_per_task
3819	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3820	if [[ "$threads_per_task" != 1 ]]
3821	then
3822	export MV2_ENABLE_AFFINITY=0
3823	fi
3824	echo "----- PBS_NODEFILE content:"
3825	cat $PBS_NODEFILE
3826	echo "-----"
3827	(( ii = $numprocs / $threads_per_task ))
3828	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3829	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3830	else
3831	mpprun -n $numprocs a.out $ROPTS
3832	fi
3833	[[ $? != 0 ]] && execution_error=true
3834
3835
3836	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3837	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3838	then
3839	apprentice
3840	fi
3841	else
3842	a.out $ROPTS
3843	fi
3844	fi
3845	if [[ $? != 0 \|\| $execution_error = true ]]
3846	then
3847
3848	# ABBRUCH BEI LAUFZEITFEHLER
3849	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3850	printf "\n +++ runtime error occured"
3851	locat=execution
3852	exit
3853	else
3854	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3855	printf "\n$striche\n *** execution finished \n"
3856
3857	# Stop the dvr streaming server and process the dvr output in order
3858	# to create dvrs- and html-files containing all streams
3859	if [[ "$dvrserver_id" != "" ]]
3860	then
3861	kill $dvrserver_id
3862	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3863
3864	# If there is a directory, data have been output by the
3865	# streaming server. Otherwise, user has chosen dvrp_output=local
3866	if [[ -d DATA_DVR ]]
3867	then
3868
3869	# Add the current dvr configuration file to the dvr output
3870	# directory
3871	cp .dvrserver.config DATA_DVR
3872
3873	# Process the dvr output (option -s for also generating
3874	# sequence mode data)
3875	process_dvr_output -d DATA_DVR -f $fname -s
3876
3877	else
3878
3879	# Process the local output
3880	process_dvr_output -l -d DATA_DVR -f $fname
3881
3882	fi
3883
3884	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3885	then
3886
3887	# Process dvr output generated in local mode (dvrp_output=local)
3888	process_dvr_output -l -d DATA_DVR -f $fname
3889
3890	fi
3891	fi
3892
3893
3894
3895	# Call of combine_plot_fields in order to merge single files written
3896	# by each PE into one file.
3897	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3898	then
3899	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3900	printf "\n 2d- and/or 3d-data may be incomplete!"
3901	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3902	elif [[ "$combine_plot_fields" == true ]]
3903	then
3904	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3905	combine_plot_fields${block}.x
3906	else
3907	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3908	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3909	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3910	fi
3911
3912
3913
3914	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3915	(( i = 0 ))
3916	while (( i < ioc ))
3917	do
3918	(( i = i + 1 ))
3919	if (( i == 1 ))
3920	then
3921	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3922	fi
3923	printf "\n >>> ${out_command[$i]}"
3924	eval ${out_command[$i]}
3925	if (( i == ioc ))
3926	then
3927	printf "\n$striche\n"
3928	fi
3929	done
3930
3931
3932	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3933	if [[ $do_trace = true ]]
3934	then
3935	printf "\n\n"
3936	ls -al
3937	fi
3938
3939
3940
3941	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3942	(( i = 0 ))
3943	while (( i < iout ))
3944	do
3945	(( i = i + 1 ))
3946	if (( i == 1 ))
3947	then
3948	printf "\n\n *** saving OUTPUT-files:\n$striche"
3949	fi
3950
3951	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3952	files_for_pes=false; filetyp=file
3953	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3954	then
3955	files_for_pes=true; filetyp=directory
3956	actionout[$i]=""
3957	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3958	then
3959	actionout[$i]=""
3960	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3961	then
3962	files_for_pes=true; filetyp=directory
3963	actionout[$i]="ar"
3964	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3965	then
3966	actionout[$i]="ar"
3967	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3968	then
3969	files_for_pes=true; filetyp=directory
3970	actionout[$i]="fl"
3971	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3972	then
3973	actionout[$i]="fl"
3974	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3975	then
3976	files_for_pes=true; filetyp=directory
3977	actionout[$i]="tr"
3978	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3979	then
3980	actionout[$i]="tr"
3981	fi
3982
3983	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3984	then
3985	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3986	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3987	then
3988	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3989	else
3990
3991
3992	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3993	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3994	# REMOTE-RECHNUNGEN
3995	if [[ "${actionout[$i]}" = tr ]]
3996	then
3997	if [[ $localhost != $fromhost ]]
3998	then
3999	if [[ $files_for_pes = false ]]
4000	then
4001	cps=""
4002	cst=""
4003	else
4004	cps=-c
4005	cst="/"
4006	fi
4007	if [[ $localhost = nech ]]
4008	then
4009
4010	# TRANSFER IN EIGENSTAENDIGEM JOB
4011	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4012	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4013	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4014	if [[ $files_for_pes = false ]]
4015	then
4016	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4017	else
4018	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4019	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4020	fi
4021
4022	echo "set -x" > transfer_${localout[$i]}
4023	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4024
4025	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4026	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4027	printf "\n or higher cycle\n"
4028	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4029
4030	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4031
4032	if [[ $localhost = nech ]]
4033	then
4034	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4035	else
4036	if [[ "$LOGNAME" = b323013 ]]
4037	then
4038	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4039	else
4040	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4041	fi
4042	fi
4043
4044	else
4045
4046	# TRANSFER INNERHALB DIESES JOBS
4047	transfer_failed=false
4048	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4049	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4050	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4051	[[ $? != 0 ]] && transfer_failed=true
4052
4053	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4054	# LOKALER MASCHINE ANLEGEN
4055	if [[ $transfer_failed = true ]]
4056	then
4057	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4058	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4059
4060	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4061	# ANLEGEN.
4062	eval local_catalog=${pathout[$i]}
4063	if [[ ! -d $local_catalog ]]
4064	then
4065	printf " *** local directory does not exist. Trying to create:\n"
4066	printf " $local_catalog \n"
4067	mkdir -p $local_catalog
4068	fi
4069	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4070	transfer_problems=true
4071	fi
4072	fi
4073	else
4074
4075	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4076	actionout[$i]=""
4077	fi
4078	fi
4079
4080
4081	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4082	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4083	# REMOTE-RECHNUNGEN
4084	if [[ "${actionout[$i]}" = tra ]]
4085	then
4086	if [[ $localhost != $fromhost ]]
4087	then
4088	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4089	then
4090
4091	# TRANSFER IN EIGENSTAENDIGEM JOB
4092	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4093	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4094	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4095	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4096
4097	echo "set -x" > transfer_${localout[$i]}
4098	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4099
4100	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4101	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4102	printf "\n or higher cycle\n"
4103	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4104
4105	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4106
4107	if [[ $localhost = nech ]]
4108	then
4109	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4110	else
4111	if [[ $LOGNAME = b323013 ]]
4112	then
4113	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4114	else
4115	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4116	fi
4117	fi
4118
4119	else
4120
4121	# TRANSFER INNERHALB DIESES JOBS
4122	transfer_failed=false
4123	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4124	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4125	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4126	[[ $? != 0 ]] && transfer_failed=true
4127
4128	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4129	# LOKALER MASCHINE ANLEGEN
4130	if [[ $transfer_failed = true ]]
4131	then
4132	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4133	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4134
4135	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4136	# ANLEGEN
4137	eval local_catalog=${pathout[$i]}
4138	if [[ ! -d $local_catalog ]]
4139	then
4140	printf " *** local directory does not exist. Trying to create:\n"
4141	printf " $local_catalog \n"
4142	mkdir -p $local_catalog
4143	fi
4144
4145	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4146	transfer_problems=true
4147	fi
4148	fi
4149	else
4150
4151	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4152	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4153	actionout[$i]=a
4154	fi
4155	fi
4156
4157
4158	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4159	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4160	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4161	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4162	if [[ "${actionout[$i]}" = fl ]]
4163	then
4164	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4165	chmod g+rx $tmp_data_catalog
4166	if [[ $files_for_pes = false ]]
4167	then
4168	printf "\n >>> OUTPUT: ${localout[$i]} to"
4169	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4170	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4171	else
4172	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4173	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4174	mkdir $tmp_data_catalog/${frelout[$i]}
4175	cd ${localout[$i]}
4176	for file in $(ls *)
4177	do
4178	ln -f $file $tmp_data_catalog/${frelout[$i]}
4179	done
4180	cd $TEMPDIR
4181	fi
4182
4183
4184	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4185	if [[ $store_on_archive_system = true ]]
4186	then
4187
4188	if [[ $archive_system = asterix ]]
4189	then
4190	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4191	if [[ $files_for_pes = false ]]
4192	then
4193	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4194	else
4195	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4196	fi
4197	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4198	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4199	echo "then" >> archive_${frelout[$i]}
4200	echo " do_stageout=false" >> archive_${frelout[$i]}
4201	echo "else" >> archive_${frelout[$i]}
4202	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4203	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4204	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4205	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4206	if [[ $files_for_pes = false ]]
4207	then
4208	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4209	else
4210	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4211	fi
4212	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4213	echo "fi" >> archive_${frelout[$i]}
4214	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4215	elif [[ $archive_system = DMF ]]
4216	then
4217	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4218	if [[ $files_for_pes = false ]]
4219	then
4220	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4221	locat=DMF
4222	exit
4223	else
4224	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4225	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4226	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4227	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4228	fi
4229	elif [[ $archive_system = tivoli ]]
4230	then
4231	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4232	if [[ $files_for_pes = false ]]
4233	then
4234	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4235	echo "set -x" >> archive_${frelout[$i]}
4236	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4237	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4238	else
4239
4240	echo "set -x" >> archive_${frelout[$i]}
4241	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4242	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4243	cd $tmp_data_catalog
4244	all_files=`ls -1 ${frelout[$i]}/*`
4245	cd - > /dev/null
4246	(( inode = 0 ))
4247	(( tp1 = tasks_per_node + 1 ))
4248	while (( inode < nodes ))
4249	do
4250	# echo "*** all_files = \"$all_files\" "
4251	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4252	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4253	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4254	# echo "*** files = \"$files\" "
4255	# echo "*** all_files = \"$all_files\" "
4256	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4257	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4258	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4259	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4260	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4261	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4262	(( inode = inode + 1 ))
4263	done
4264	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4265	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4266	fi
4267	elif [[ $archive_system = ut ]]
4268	then
4269	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4270	if [[ $files_for_pes = false ]]
4271	then
4272	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4273	echo "set -x" >> archive_${frelout[$i]}
4274	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4275	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4276	else
4277
4278	echo "set -x" >> archive_${frelout[$i]}
4279	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4280	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4281	cd $tmp_data_catalog
4282	all_files=`ls -1 ${frelout[$i]}/*`
4283	cd - > /dev/null
4284	(( inode = 0 ))
4285	(( tp1 = tasks_per_node + 1 ))
4286	while (( inode < nodes ))
4287	do
4288	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4289	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4290	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4291	(( inode = inode + 1 ))
4292	done
4293	fi
4294	elif [[ $archive_system = none ]]
4295	then
4296	printf " +++ archiving on $localhost not available!\n"
4297	fi
4298
4299	if [[ $archive_system != none ]]
4300	then
4301	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4302	then
4303	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4304	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4305	elif [[ $localhost = nech ]]
4306	then
4307	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4308	fi
4309	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4310	fi
4311	else
4312	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4313	fi
4314
4315
4316	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4317	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4318	if [[ $files_for_pes = false ]]
4319	then
4320	cat /dev/null > ${pathout[$i]}
4321	else
4322	mkdir -p ${pathout[$i]}
4323	fi
4324
4325	fi
4326
4327
4328	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4329	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4330	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4331	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4332	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4333	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4334	if [[ "${actionout[$i]}" = ar ]]
4335	then
4336	if [[ $files_for_pes = false ]]
4337	then
4338	printf "\n >>> OUTPUT: ${localout[$i]} to"
4339	printf "\n ${pathout[$i]}"
4340	printf "\n File will be copied to archive-system ($archive_system) !\n"
4341	else
4342	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4343	printf "\n ${pathout[$i]}"
4344	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4345	fi
4346	mv ${localout[$i]} ${frelout[$i]}
4347
4348	file_saved=false
4349
4350	if [[ $archive_system = asterix ]]
4351	then
4352	do_stageout=true
4353	(( stageout_anz = 0 ))
4354	while [[ $do_stageout = true ]]
4355	do
4356	if [[ $files_for_pes = false ]]
4357	then
4358	stageout ${frelout[$i]} > STAGE_OUTPUT
4359	else
4360	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4361	fi
4362	cat STAGE_OUTPUT
4363	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4364	then
4365	file_saved=true
4366	do_stageout=false
4367	else
4368	if [[ $files_for_pes = false ]]
4369	then
4370	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4371	else
4372	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4373	fi
4374	(( stageout_anz = stageout_anz + 1 ))
4375	if (( stageout_anz == 10 ))
4376	then
4377	printf "\n +++ stoped after 10 unsuccessful tries!"
4378	archive_save=false
4379	do_stageout=false
4380	else
4381	printf "\n *** new try to store on archive after 15 min:"
4382	sleep 900
4383	fi
4384	fi
4385	done
4386	elif [[ $archive_system = DMF ]]
4387	then
4388	if [[ $files_for_pes = false ]]
4389	then
4390	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4391	locat=DMF
4392	exit
4393	else
4394	rm -rf $ARCHIVE/${frelout[$i]}
4395	cp -r ${frelout[$i]} $ARCHIVE
4396	fi
4397	file_saved=true
4398	elif [[ $archive_system = tivoli ]]
4399	then
4400	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4401	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4402	# GELEGT WERDEN
4403	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4404	chmod g+rx $tmp_data_catalog
4405	if [[ $files_for_pes = false ]]
4406	then
4407	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4408	else
4409	mkdir $tmp_data_catalog/${frelout[$i]}
4410	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4411	fi
4412
4413	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4414	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4415	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4416	if [[ $files_for_pes = false ]]
4417	then
4418	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4419	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4420	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4421	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4422	else
4423	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4424	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4425	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4426	fi
4427
4428	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4429	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4430	file_saved=true
4431
4432	elif [[ $archive_system = ut ]]
4433	then
4434	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4435	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4436	# GELEGT WERDEN
4437	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4438	chmod g+rx $tmp_data_catalog
4439	if [[ $files_for_pes = false ]]
4440	then
4441	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4442	else
4443	mkdir $tmp_data_catalog/${frelout[$i]}
4444	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4445	fi
4446
4447	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4448	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4449	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4450	if [[ $files_for_pes = false ]]
4451	then
4452	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4453	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4454	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4455	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4456	else
4457	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4458	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4459	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4460	fi
4461
4462	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4463	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4464	file_saved=true
4465
4466	else
4467	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4468	archive_save=false
4469	fi
4470	if [[ $file_saved = true ]]
4471	then
4472	if [[ $files_for_pes = false ]]
4473	then
4474	cat /dev/null > ${pathout[$i]}
4475	else
4476	mkdir -p ${pathout[$i]}
4477	fi
4478	fi
4479	fi
4480
4481	# APPEND AUF LOKALER MASCHINE
4482	if [[ "${actionout[$i]}" = "a" ]]
4483	then
4484	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4485	then
4486	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4487	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4488	else
4489	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4490	cat ${localout[$i]} >> ${pathout[$i]}
4491	fi
4492	fi
4493
4494	# KOPIEREN AUF LOKALER MASCHINE
4495	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4496	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4497	then
4498
4499	# KOPIEREN AUF EINPROZESSORMASCHINE
4500	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4501	then
4502	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4503	if [[ $link_local_output = true ]]
4504	then
4505	printf " using ln -f\n"
4506	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4507	fi
4508	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4509	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4510	then
4511	if [[ $link_local_output = true ]]
4512	then
4513	printf " ln failed, using cp...\n"
4514	fi
4515	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4516	fi
4517	else
4518	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4519	if [[ $link_local_output = true ]]
4520	then
4521	printf " using ln -f\n"
4522	ln -f ${localout[$i]} ${pathout[$i]}
4523	fi
4524	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4525	if [[ ! -f "${pathout[$i]}" ]]
4526	then
4527	if [[ $link_local_output = true ]]
4528	then
4529	printf " ln failed, using cp...\n"
4530	fi
4531	cp ${localout[$i]} ${pathout[$i]}
4532	fi
4533	fi
4534
4535	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4536	then
4537
4538	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4539	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4540	# WIRD DANN KOPIERT
4541	# PER MOVE UMBENANNT WERDEN
4542	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4543	if [[ $link_local_output = true ]]
4544	then
4545	printf " using ln -f\n"
4546	mkdir ${pathout[$i]}
4547	cd ${localout[$i]}
4548	for file in $(ls *)
4549	do
4550	ln -f $file ${pathout[$i]}
4551	done
4552	cd $TEMPDIR
4553	fi
4554	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4555	if [[ ! -f "${pathout[$i]}/_0000" ]]
4556	then
4557	if [[ $link_local_output = true ]]
4558	then
4559	printf " ln failed for .../_0000, using cp...\n"
4560	fi
4561	cp -r ${localout[$i]} ${pathout[$i]}
4562	fi
4563
4564	fi
4565	fi
4566	done
4567	if (( i != 0 ))
4568	then
4569	if [[ $transfer_problems = true ]]
4570	then
4571	printf "\n$striche\n *** OUTPUT-files saved"
4572	printf "\n +++ WARNING: some data transfers failed! \n"
4573	else
4574	printf "\n$striche\n *** all OUTPUT-files saved \n"
4575	fi
4576	fi
4577
4578
4579	# EVENTUELL FOLGEJOB STARTEN
4580	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4581	if [[ -f CONTINUE_RUN ]]
4582	then
4583
4584	if [[ $archive_save = true ]]
4585	then
4586
4587	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4588	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4589	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4590	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4591	# HANDEN
4592	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4593	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4594	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4595	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4596	then
4597	mc=`echo $mc \| sed 's/#/f/g'`
4598	fi
4599
4600
4601	# JOB STARTEN
4602	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4603	echo " $mc"
4604	printf "\n$striche\n"
4605	if [[ $localhost != $fromhost ]]
4606	then
4607
4608	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4609	then
4610	echo "*** ssh will be used to initiate restart-runs!"
4611	echo " return_addres=\"$return_addres\" "
4612	echo " return_username=\"$return_username\" "
4613	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4614	then
4615	if [[ $localhost = ibmh ]]
4616	then
4617	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4618	else
4619	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4620	fi
4621	else
4622	if [[ $localhost = ibmkisti ]]
4623	then
4624	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4625	else
4626	if [[ $localhost = lcflow ]]
4627	then
4628	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4629	else
4630	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4631	fi
4632	fi
4633	fi
4634	else
4635	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4636	locat=restart; exit
4637	fi
4638
4639	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4640	# DER AKTUELLE JOB ENDET
4641	if [[ $queue = special1q ]]
4642	then
4643	sleep 120
4644	else
4645	sleep 30
4646	fi
4647
4648	else
4649
4650	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4651	# RUFEN WERDEN, AUSSER AUF lcfimm
4652	cd $LOCAL_PWD
4653	if [[ $localhost = lcfimm ]]
4654	then
4655	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4656	elif [[ $localhost = lckyuh ]]
4657	then
4658	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4659	printf "\n please restart job manually using command:\n"
4660	printf "\n \"$mc\" "
4661	else
4662	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4663	fi
4664	cd - > /dev/null
4665	fi
4666	if [[ $localhost = lckyuh ]]
4667	then
4668	printf "\n$striche\n *** restart-run to be initiated manually\n"
4669	else
4670	printf "\n$striche\n *** restart-run initiated \n"
4671	fi
4672
4673
4674	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4675	# GEHOLT WORDEN SIND, LOESCHEN
4676	(( i = 0 ))
4677	while (( i < iin ))
4678	do
4679	(( i = i + 1 ))
4680	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4681	then
4682	rm -r $tmp_data_catalog/${frelin[$i]}
4683	fi
4684	done
4685
4686	else
4687
4688	printf "\n +++ no restart-run possible, since errors occured"
4689	printf "\n during the archive process"
4690	fi
4691
4692	fi
4693
4694
4695
4696	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4697	if [[ "$email_notification" != "none" ]]
4698	then
4699
4700	if [[ $localhost != $fromhost ]]
4701	then
4702	if [[ -f CONTINUE_RUN ]]
4703	then
4704	echo "PALM restart run necessary" > email_text
4705	echo "description header of actual run:" >> email_text
4706	cat CONTINUE_RUN >> email_text
4707	echo "mrun-command to restart:" >> email_text
4708	echo "$mc" >> email_text
4709	else
4710	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4711	fi
4712	mail $email_notification < email_text
4713	printf "\n *** email notification sent to \"$email_notification\" "
4714	fi
4715	fi
4716
4717
4718
4719	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4720	cd $HOME
4721	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4722
4723	else
4724
4725
4726	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4727	# CHENDE AKTIONEN DURCHGEFUEHRT
4728
4729	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4730	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4731	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4732	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4733	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4734	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4735	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4736	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4737	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4738	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4739	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4740	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4741	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4742	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4743	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4744	if [[ $use_openmp = true ]]
4745	then
4746	mrun_com=${mrun_com}" -O $threads_per_task"
4747	fi
4748	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4749	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4750	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4751	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4752	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4753	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4754	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4755	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4756	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4757	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4758	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4759	if [[ $do_remote = true ]]
4760	then
4761	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4762	fi
4763
4764
4765	# create executable for batch job
4766	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4767	then
4768
4769	printf "\n *** creating the executable for batch job\n"
4770
4771	# method only works for batch jobs on local hosts
4772	if [[ $host != $localhost ]]
4773	then
4774	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4775	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4776	locat=create_executable; exit
4777	fi
4778
4779	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4780	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4781
4782	cp $make_depository .
4783	tar -xf $make_depository > /dev/null 2>&1
4784	cp ../* . > /dev/null 2>&1
4785
4786	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4787
4788	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4789	then
4790	printf "\n +++ error occured while compiling or linking"
4791	locat=compile
4792	exit
4793	fi
4794
4795	mv a.out ..
4796	cd - > /dev/null 2>&1
4797	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4798
4799	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4800
4801	fi
4802
4803
4804	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4805	jobfile=jobfile.$RANDOM
4806
4807
4808	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4809	echo "mkdir $TEMPDIR" >> $jobfile
4810	echo "cd $TEMPDIR" >> $jobfile
4811
4812
4813	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4814	if [[ $do_trace = true ]]
4815	then
4816	echo "set -x" >> $jobfile
4817	else
4818	echo "set +vx" >> $jobfile
4819	fi
4820
4821
4822	# initialize the environment and load modules
4823	if [[ "$init_cmds" != "" ]]
4824	then
4825	echo "$init_cmds" >> $jobfile
4826	fi
4827	if [[ "$module_calls" != "" ]]
4828	then
4829	echo "$module_calls" >> $jobfile
4830	fi
4831
4832
4833	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4834	# DATEI FUER DEN JOB
4835	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayf ]]
4836	then
4837
4838	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4839	# KOPIEREN
4840	if [[ $restart_run != true ]]
4841	then
4842	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4843	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4844	fi
4845
4846	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4847	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4848	echo "set -x" >> $jobfile
4849	if [[ $host = $localhost ]]
4850	then
4851
4852	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4853	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4854	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4855
4856	else
4857	if [[ $host != ibmkisti ]]
4858	then
4859	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4860	else
4861	# on KISTI's IBM firewall is only opened on interactive node
4862	echo "localdir=\`pwd\`" >> $jobfile
4863	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4864	fi
4865	fi
4866	echo "export SOURCES_COMPLETE=true" >> $jobfile
4867
4868	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4869	# ARBEITSVERZEICHNIS VERSCHIEBEN
4870	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4871	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4872	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4873	echo "execute_mrun=true" >> $jobfile
4874	echo " " >> $jobfile
4875
4876	else
4877
4878	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4879	# SOWIE GEGEBENENFALLS DES MAKEFILES
4880	if [[ $do_compile = true ]]
4881	then
4882
4883	source_catalog=SOURCES_FOR_RUN_$fname
4884
4885	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4886	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4887	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4888	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4889	echo "export SOURCES_COMPLETE=true" >> $jobfile
4890	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4891
4892	for filename in $source_list
4893	do
4894	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4895	echo "cat > $filename << \"%END%\"" >> $jobfile
4896	cat $source_catalog/$filename >> $jobfile
4897	echo " " >> $jobfile
4898	echo "%END%" >> $jobfile
4899	echo " " >> $jobfile
4900	done
4901
4902	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4903	echo "cat > Makefile << \"%END%\"" >> $jobfile
4904	cat $source_catalog/Makefile >> $jobfile
4905	echo " " >> $jobfile
4906	echo "%END%" >> $jobfile
4907	echo " " >> $jobfile
4908
4909	echo "cd - > /dev/null" >> $jobfile
4910
4911	fi
4912
4913
4914	# ABSPEICHERN DER KONFIGURATIONSDATEI
4915	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4916	# Lines with #$ coming from the svn keyword substitution are
4917	# removed from the config file in order to avoid problems
4918	# with the SGE batch system
4919	echo "cat > $config_file << \"%END%\"" >> $jobfile
4920	if [[ $host = lckyuh ]]
4921	then
4922	# no cross compiler on compute node
4923	sed 's/frtpx/frt/g' $config_file >> $jobfile
4924	else
4925	sed 's/#$.*//g' $config_file >> $jobfile
4926	fi
4927	echo "%END%" >> $jobfile
4928	echo " " >> $jobfile
4929
4930
4931	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4932	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4933	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4934	if [[ $host = lckyuh ]]
4935	then
4936	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4937	else
4938	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4939	fi
4940	echo "%END%" >> $jobfile
4941	echo "chmod u+x $mrun_script_name" >> $jobfile
4942	echo "execute_mrun=true" >> $jobfile
4943	echo " " >> $jobfile
4944
4945	fi
4946
4947
4948	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4949	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4950	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4951	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4952	if [[ $do_remote = true ]]
4953	then
4954	(( i = 0 ))
4955	while (( i < iin ))
4956	do
4957	(( i = i + 1 ))
4958	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4959	if [[ "${transin[$i]}" = job ]]
4960	then
4961	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4962	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4963	echo " " >> $jobfile
4964	echo "%END%" >> $jobfile
4965	else
4966	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4967	fi
4968
4969	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4970	echo "if [[ \$? = 1 ]]" >> $jobfile
4971	echo "then" >> $jobfile
4972	echo " echo \" \" " >> $jobfile
4973	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4974	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4975	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4976	echo " execute_mrun=false" >> $jobfile
4977	echo "fi" >> $jobfile
4978	done
4979	fi
4980
4981	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4982	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4983	echo "LOCAL_PWD=$working_directory" >> $jobfile
4984	echo "export LOCAL_PWD" >> $jobfile
4985
4986	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4987	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4988	echo "export LOCAL_MRUN_PATH" >> $jobfile
4989
4990	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4991	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4992	then
4993	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4994	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4995	then
4996	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4997	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4998	fi
4999
5000	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5001	echo "set -x" >> $jobfile
5002	echo "queue=$queue" >> $jobfile
5003	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5004	echo 'ls -al; echo `pwd`' >> $jobfile
5005	echo "cd \$HOME" >> $jobfile
5006	echo "rm -rf $TEMPDIR" >> $jobfile
5007
5008
5009
5010
5011	# JOB PER SUBJOB STARTEN
5012	if [[ $silent = false ]]
5013	then
5014	printf "\n "
5015	else
5016	printf "\n\n"
5017	fi
5018
5019	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5020	rm -rf $jobfile
5021
5022
5023	fi # ENDE REMOTE-TEIL
5024
5025
5026
5027	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |