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source: palm/trunk/SCRIPTS/mrun @ 1123

Last change on this file since 1123 was 1123, checked in by heinze, 10 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1123 2013-04-09 08:39:09Z heinze $
29	#
30	# 1122 2013-04-09 08:37:16Z heinze
31	# Bugfix: change type of variable last_char
32	#
33	# 1119 2013-04-05 15:11:19Z raasch
34	# Bugfix for setting -T option for subjob
35	#
36	# 1108 2013-03-05 07:03:32Z raasch
37	# bugfix for coupled runs on lckyut/lckyuh
38	#
39	# 1106 2013-03-04 05:31:38Z raasch
40	# --stdin argument for mpiexec on lckyuh
41	# -y and -Y settings output to header
42	#
43	# 1103 2013-02-20 02:15:53Z raasch
44	# default script runs again under ksh, because of unsolved problems with read
45	# from stdin: when bash script is called from a ksh, message "read error: 0:
46	# Resource temporarily unavailable" appears and script does not stop,
47	# further bash compatibility adjustments,
48	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
49	# on lckyuh, but mrun does not terminate and issues a warning instead
50	#
51	# 1101 2013-02-17 10:20:21Z raasch
52	# script now running under bash instead of ksh, which required small adjustments
53	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
54	# read from stdin),
55	# cross compilername on lckyuh compute nodes replaced by real compiler name
56	#
57	# 1099 2013-02-10 01:47:43Z raasch
58	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
59	# and for Forwind cluster (lcflow)
60	# small further adjustments for lckyut
61	#
62	# 1094 2013-02-03 01:52:12Z raasch
63	# explicit ssh/scp port can be set in config file with environment variable
64	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
65	# decalpha parts (yonsei) removed
66	#
67	# 2013-02-02 07:06:13Z raasch
68	# adjustments for Kyushu-University computing center (lckyut - tatara)
69	#
70	# 1083 2013-01-04 10:22:09Z maronga
71	# bugfix in parameter file check (read %cpp_options was missing)
72	#
73	# 1069 2012-11-28 16:18:43Z maronga
74	# bugfix: coupling mode was always set to mpi2, typos removed
75	#
76	# 1058 2012-11-21 07:00:35Z raasch
77	# Intel inspector (inspxe) is given the number of PEs instead of the number of
78	# nodes
79	#
80	# 1046 2012-11-09 14:38:45Z maronga
81	# code put under GPL (PALM 3.9)
82	#
83	# 21/03/94 - Siggi - first version finished
84	# 03/03/94 - Siggi - script development started
85	#
86	#--------------------------------------------------------------------------------#
87	# mrun - script for running PALM jobs
88	#--------------------------------------------------------------------------------#
89
90
91
92	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
93
94	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
95	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
96	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
97
98	AddFilenames=""
99	additional_conditions=""
100	add_source_path=""
101	afname=""
102	archive_save=true
103	archive_system=none
104	check_namelist_files=true
105	combine_plot_fields=true
106	compiler_name=""
107	cond1=""
108	cond2=""
109	config_file=.mrun.config
110	coupled_dist=""
111	coupled_mode="mpi1"
112	cpp_opts=""
113	cpp_options=""
114	cpumax=0
115	cpurest=0
116	delete_temporary_catalog=true
117	do_batch=false
118	do_compile=true
119	do_remote=false
120	do_stagein=true
121	do_stageout=true
122	do_trace=false
123	email_notification="none"
124	exclude=""
125	executable=""
126	execution_error=false
127	fimm=false
128	fname=test
129	fromhost=""
130	global_revision=""
131	group_number=none
132	host=""
133	host_file=""
134	hp=""
135	ignore_archive_error=false
136	input_list=""
137	interpreted_config_file=""
138	job_catalog="~/job_queue"
139	job_on_file=""
140	keep_data_from_previous_run=false
141	link_local_input=false
142	link_local_output=false
143	localhost_realname=$(hostname)
144	local_compile=false
145	local_dvrserver_running=.FALSE.
146	locat=normal
147	mainprog=""
148	makefile=""
149	max_par_io_str=""
150	mc=$0
151	while [[ $(echo $mc \| grep -c "/") != 0 ]]
152	do
153	mc=`echo $mc \| cut -f2- -d"/"`
154	done
155	module_calls=""
156	mrun_script_name=$mc
157	netcdf_inc=""
158	netcdf_lib=""
159	netcdf_support=false
160	node_usage=default
161	numprocs=""
162	numprocs_atmos=0
163	numprocs_ocean=0
164	OOPT=""
165	openmp=false
166	output_list=""
167	package_list=""
168	punkte="..........................................................."
169	queue=none
170	read_from_config=""
171	restart_run=false
172	if [[ `hostname` = rte10 ]]
173	then
174	return_addres=133.5.185.60
175	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
176	elif [[ `hostname` = climate0 ]]
177	then
178	return_addres=165.132.26.68
179	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
180	elif [[ `hostname` = urban00 ]]
181	then
182	return_addres=147.46.30.151
183	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
184	else
185	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
186	fi
187	return_password=""
188	return_username=$LOGNAME
189	remotecall=false
190	remote_username=""
191	run_coupled_model=false
192	run_mode=""
193	scirocco=false
194	store_on_archive_system=false
195	striche=" ----------------------------------------------------------------------------"
196	silent=false
197	source_list=""
198	source_path=SOURCE
199	tasks_per_node=""
200	threads_per_task=1
201	tmpcreate=false
202	tmp_data_catalog=""
203	transfer_problems=false
204	usern=$LOGNAME
205	use_openmp=false
206	version="MRUN 2.0 Rev$Rev: 1123 $"
207	working_directory=`pwd`
208	TOPT=""
209	XOPT=""
210	zeit=$( date \| cut -c 12-19 )
211
212	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
213	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
214
215
216
217
218	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
219	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
220
221	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
222	# EXPORTIERT WERDEN
223	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
224	export group_number input_list memory numprocs output_list queue run_mode
225
226
227
228	# FEHLERBEHANDLUNG
229	# BEI EXIT:
230	trap 'rm -rf $working_directory/tmp_mrun
231	if [[ $locat != localhost ]]
232	then
233	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
234	# then
235	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
236	#MRUN-calls on $localhost
237	#
238	#date and time user localhost remotehost termination mrun-command
239	#--------------------------------------------------------------------------------------------------------------------
240	#%STATEND%
241	# chmod 666 ${mrun_path}/statistik/mrun_statistik
242	# fi
243	#
244	# # EINTRAG IN DIE STATISTIK-DATEI
245	# string1=`date` #-L35
246	# string2=$usern #-L12
247	# string3=$localhost_realname #-L12
248	# string4=$host #-L12
249	# string5=$locat #-L12
250	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
251	# then
252	# if [[ $do_batch = true ]]
253	# then
254	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
255	# else
256	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
257	# fi
258	# fi
259	echo " " > /dev/null
260	fi
261
262	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
263	then
264
265	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
266	(( i = 0 ))
267	while (( i < iec ))
268	do
269	(( i = i + 1 ))
270	printf "\n *** Execution of ERROR-command:\n"
271	printf " >>> ${err_command[$i]}\n"
272	eval ${err_command[$i]}
273	done
274	if [[ -n $interpreted_config_file ]]
275	then
276	rm -rf $interpreted_config_file
277	fi
278	if [[ -n .mrun_environment ]]
279	then
280	rm -rf .mrun_environment
281	fi
282	if [[ $tmpcreate = true ]]
283	then
284	printf "\n *** Contents of \"$TEMPDIR\":\n"
285	ls -al; cd
286	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
287	fi
288	if [[ "$dvrserver_id" != "" ]]
289	then
290	echo "+++ killing dvrserver_id=$dvrserver_id"
291	kill $dvrserver_id
292	fi
293	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
294	then
295	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
296	fi
297	printf "\n\n+++ MRUN killed \n\n"
298	elif [[ $locat != control_c ]]
299	then
300	printf "\n\n --> all actions finished\n\n"
301	printf " Bye, bye $usern !!\n\n"
302	fi' exit
303
304
305	# BEI TERMINAL-BREAK:
306	trap 'rm -rf $working_directory/tmp_mrun
307	rm -rf $working_directory/tmp_check_namelist_files
308	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
309	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
310	then
311	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
312	fi
313	if [[ "$dvrserver_id" != "" ]]
314	then
315	echo "+++ killing dvrserver_id=$dvrserver_id"
316	kill $dvrserver_id
317	fi
318	printf "\n+++ MRUN killed by \"^C\" \n\n"
319	locat=control_c
320	exit
321	' 2
322
323
324	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
325	# BEEN SET
326	if [[ "$PALM_BIN" = "" ]]
327	then
328	printf "\n +++ environment variable PALM_BIN has not been set"
329	printf "\n please set it to the directory where the PALM scripts are located"
330	locat=palm_bin; exit
331	fi
332	export PATH=$PALM_BIN:$PATH
333
334
335
336	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
337	# FUER FOLGEJOBS BENOETIGT WIRD
338	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
339	do
340	case $option in
341	(a) afname=$OPTARG;;
342	(A) store_on_archive_system=true; mc="$mc -A";;
343	(b) do_batch=true; mc="$mc -b";;
344	(B) delete_temporary_catalog=false; mc="$mc -B";;
345	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
346	(C) restart_run=true; mc="$mc -C";;
347	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
348	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
349	(F) job_on_file="-D"; mc="$mc -F";;
350	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
351	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
352	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
353	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
354	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
355	(I) ignore_archive_error=true; mc="$mc -I";;
356	(k) keep_data_from_previous_run=true; mc="$mc -k";;
357	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
358	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
359	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
360	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
361	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
362	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
363	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
364	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
365	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
366	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
367	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
368	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
369	(S) read_from_config=false; mc="$mc -S";;
370	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
371	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
372	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
373	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
374	(v) silent=true; mc="$mc -v";;
375	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
376	(x) do_trace=true;set -x; mc="$mc -x";;
377	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
378	(y) ocean_file_appendix=true; mc="$mc -y";;
379	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
380	(z) check_namelist_files=false; mc="$mc -z";;
381	(Z) combine_plot_fields=false; mc="$mc -Z";;
382	(\?) printf "\n +++ unknown option $OPTARG \n"
383	printf "\n --> type \"$0 ?\" for available options \n"
384	locat=parameter;exit;;
385	esac
386	done
387
388
389	# EVTL. POSITIONSPARAMETER EINLESEN
390	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
391	(( to_shift = $OPTIND - 1 ))
392	shift $to_shift
393
394	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
395	if [[ "$1" = "?" ]]
396	then
397	(printf "\n *** mrun can be called as follows:\n"
398	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
399	printf "\n Description of available options:\n"
400	printf "\n Option Description Default-Value"
401	printf "\n -a base name of input files equiv. -d"
402	printf "\n -A archiving when using file-attribute fl"
403	printf "\n -b batch-job on local machine ---"
404	printf "\n -B do not delete temporary directory at end ---"
405	printf "\n -c configuration file .mrun.config"
406	printf "\n -d base name of files attached to program test"
407	printf "\n -D preprocessor(cpp)-directives \"\" "
408	printf "\n -F create remote job file only ---"
409	printf "\n -h execution host $localhost_realname"
410	printf "\n -i INPUT control list \"\" "
411	printf "\n -I archiving errors of previous batch-jobs"
412	printf "\n will be ignored"
413	printf "\n -k keep data from previous run"
414	printf "\n -K additional conditions for controling"
415	printf "\n usage of conditional code and"
416	printf "\n env-variables in configuration file \"\" "
417	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
418	printf "\n -M Makefile name Makefile"
419	printf "\n -n node usage (shared/not_shared) depending on -h"
420	printf "\n -o OUTPUT control list \"\" "
421	printf "\n -O use OpenMP ---"
422	printf "\n -p software package list \"\" "
423	printf "\n -q queue \"$queue\" "
424	printf "\n -r run control list (combines -i -o) \"\" "
425	printf "\n -s filenames of routines to be compiled \"\" "
426	printf "\n must end with .f, .f90, .F, or .c !"
427	printf "\n use \"..\" for more than one file and wildcards"
428	printf "\n -s LM compiles all locally modified files"
429	printf "\n -S config file interpreted by shellscript ---"
430	printf "\n -t allowed cpu-time in seconds (batch) 0"
431	printf "\n -T tasks per node depending on -h"
432	printf "\n -u username on remote machine \"\" "
433	printf "\n -v no prompt for confirmation ---"
434	printf "\n -w maximum parallel io streams as given by -X"
435	printf "\n -x tracing of mrun for debug purposes ---"
436	printf "\n -X # of processors (on parallel machines) 1"
437	printf "\n -y add appendix \"_O\" to all local output"
438	printf "\n files (ocean precursor runs followed by"
439	printf "\n coupled atmosphere-ocean runs) ---"
440	printf "\n -Y run coupled model, \"#1 #2\" with"
441	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
442	printf "\n -z disable a priori parameter file check ---"
443	printf "\n -Z skip combine_plot_fields at the end of "
444	printf "\n the simulation ---"
445	printf "\n "
446	printf "\n Possible values of positional parameter <modus>:"
447	printf "\n \"?\" - this outline \n\n") \| more
448	exit
449	elif [[ "$1" != "" ]]
450	then
451	printf "\n +++ positional parameter $1 unknown \n"
452	locat=parameter; exit
453	fi
454
455
456
457	# KURZE STARTMELDUNG
458	printf "\n*** $version "
459	printf "\n will be executed. Please wait ..."
460
461
462
463	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
464	if [[ ! -f $config_file ]]
465	then
466	printf "\n\n +++ configuration file: "
467	printf "\n $config_file"
468	printf "\n does not exist"
469	locat=connect; exit
470	fi
471
472
473	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
474	line=""
475	grep "%host_identifier" $config_file > tmp_mrun
476	while read line
477	do
478	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
479	then
480	HOSTNAME=`echo $line \| cut -d" " -s -f2`
481	host_identifier=`echo $line \| cut -d" " -s -f3`
482	if [[ $localhost_realname = $HOSTNAME ]]
483	then
484	localhost=$host_identifier
485	break
486	fi
487	fi
488	done < tmp_mrun
489
490	if [[ "$localhost" = "" ]]
491	then
492	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
493	printf "\n for local host \"$localhost_realname\"."
494	printf "\n Please add line"
495	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
496	printf "\n to the configuration file."
497	locat=localhost; exit
498	fi
499
500
501	# HOSTSPEZIFISCHE VARIABLEN SETZEN
502	case $localhost_realname in
503	(r1\|r2\|h01\|b01) archive_system=tivoli;;
504	(cs*) archive_system=ut;;
505	(fimm.bccs.uib.no) fimm=true;;
506	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
507	(scirocco) scirocco=true;;
508	esac
509
510
511
512	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
513	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
514	[[ "$afname" = "" ]] && afname=$fname
515
516
517	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
518	if [[ "$run_mode" != "" ]]
519	then
520	input_list="$input_list $run_mode"
521	output_list="$output_list $run_mode"
522	fi
523
524
525	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
526	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
527	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
528	# STARTET)
529	if [[ "$fromhost" = "" ]]
530	then
531	fromhost=$localhost
532	fi
533
534
535	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
536	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
537	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
538	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
539	if [[ -n $host && "$host" != $localhost ]]
540	then
541	do_batch=true
542	do_remote=true
543	case $host in
544	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
545	(*) printf "\n"
546	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
547	printf "\n is not available"
548	locat=nqs; (( iec = 0 )); exit;;
549	esac
550	else
551	host=$localhost
552	fi
553
554
555	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
556	if [[ -n $additional_conditions ]]
557	then
558	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
559	cond1=`echo $additional_conditions \| cut -d" " -f1`
560	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
561	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
562	if [[ -n $dummy ]]
563	then
564	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
565	locat=options; exit
566	fi
567	block=_$cond1
568	[[ -n $cond2 ]] && block=${block}_$cond2
569	fi
570
571
572	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
573	if [[ $run_coupled_model = true ]]
574	then
575
576	if [[ -n $coupled_dist ]]
577	then
578
579	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
580	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
581
582	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
583	then
584
585	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
586	printf "\n PEs (total) : $numprocs"
587	printf "\n PEs (atmosphere): $numprocs_atmos"
588	printf "\n PEs (ocean) : $numprocs_ocean"
589	locat=coupling; exit
590
591	fi
592
593	else
594
595	(( numprocs_ocean = $numprocs / 2 ))
596	(( numprocs_atmos = $numprocs / 2 ))
597
598	fi
599	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
600
601	# GET coupled_mode FROM THE CONFIG FILE
602	line=""
603	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
604	while read line
605	do
606	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
607	then
608	coupled_mode="mpi2"
609	fi
610	done < tmp_mrun
611
612	fi
613
614
615	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
616	# ARCHIVIERUNG FEHLGESCHLAGEN IST
617	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
618	then
619	if [[ $ignore_archive_error = false ]]
620	then
621	printf "\n +++ data archiving of previous run failed"
622	printf "\n see directory \~/job_queue on remote machine"
623	locat=archive; exit
624	else
625	printf "\n +++ warning: data archiving in a previous run failed"
626	printf "\n MRUN continues, trying to get backup copy"
627	fi
628	fi
629
630
631	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
632	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
633	mrun_memory=$memory
634	mrun_group_number=$group_number
635	mrun_cpumax=$cpumax
636	mrun_numprocs=$numprocs
637
638
639	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
640	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
641	if [[ "$read_from_config" = false ]]
642	then
643
644	[[ $silent = false ]] && printf "\n Reading the configuration file... "
645	while read zeile
646	do
647	[[ $silent = false ]] && printf "."
648
649
650	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
651	# ERSETZEN
652	eval zeile=\"$zeile\"
653
654
655	# INTERPRETATION DER ZEILE
656	if [[ "$(echo $zeile)" = "" ]]
657	then
658	# LEERZEILE, KEINE AKTION
659	continue
660
661	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
662	then
663
664	# ZEILE IST KOMMENTARZEILE
665	true
666
667	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
668	then
669
670	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
671	zeile=$(echo $zeile \| cut -c2-)
672	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
673	var=`echo $zeile \| cut -d" " -f1`
674	value=`echo $zeile \| cut -d" " -s -f2`
675	for_host=`echo $zeile \| cut -d" " -s -f3`
676	for_cond1=`echo $zeile \| cut -d" " -s -f4`
677	for_cond2=`echo $zeile \| cut -d" " -s -f5`
678
679	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
680	then
681
682	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
683	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
684	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
685
686
687	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
688	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
689	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
690	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
691	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
692	# KONFIGURATIONSDATEI
693	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
694	then
695	eval $var=\$value
696
697	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
698	if [[ $do_trace = true ]]
699	then
700	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
701	fi
702	fi
703
704	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
705	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
706	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
707	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
708	if [[ $var = host ]]
709	then
710	if [[ -n $host && "$host" != $localhost ]]
711	then
712	do_batch=true
713	do_remote=true
714	case $host in
715	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
716	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
717	printf "\n is not available"
718	locat=nqs; exit;;
719	esac
720	else
721	host=$localhost
722	fi
723	fi
724
725	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
726	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
727	# DEN PROGRAMMEN BENOETIGT WERDEN
728	export $var
729	fi
730
731
732
733
734	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
735	then
736
737	# ZEILE DEFINIERT ERROR-KOMMANDO
738	(( iec = iec + 1 ))
739	zeile=$(echo $zeile \| cut -c4-)
740	err_command[$iec]="$zeile"
741
742	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
743	then
744
745	# ZEILE DEFINIERT INPUT-KOMMANDO
746	(( iic = iic + 1 ))
747	zeile=$(echo $zeile \| cut -c4-)
748	in_command[$iic]="$zeile"
749
750	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
751	then
752
753	# ZEILE DEFINIERT OUTPUT-KOMMANDO
754	(( ioc = ioc + 1 ))
755	zeile=$(echo $zeile \| cut -c4-)
756	out_command[$ioc]="$zeile"
757
758	else
759
760	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
761	# s2a: in/out - Feld
762	# s2b: loc - Feld (optional)
763	# s2c: tr/ar - Feld (optional)
764	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
765	s1=`echo $zeile \| cut -d" " -f1`
766	s2=`echo $zeile \| cut -d" " -s -f2`
767	s2a=$(echo $s2 \| cut -d":" -f1)
768	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
769	then
770	s2b=""
771	s2c=""
772	else
773	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
774	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
775	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
776	fi
777	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
778	s3=`echo $zeile \| cut -d" " -f3`
779	s4=`echo $zeile \| cut -d" " -s -f4`
780	s5=`echo $zeile \| cut -d" " -s -f5`
781	s6=`echo $zeile \| cut -d" " -s -f6`
782
783
784	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
785	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
786	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
787	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
788	# HANDEN SEIN MUSS (D.H. s2b = loc)
789	IFSALT="$IFS"; IFS="$IFS:"
790	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
791	then
792	found=false
793	for actual in $input_list
794	do
795	for formal in $s3
796	do
797	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
798	done
799	done
800	if [[ $found = true ]]
801	then
802	(( iin = iin + 1 ))
803	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
804	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
805	extin[$iin]=$s6
806	fi
807	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
808	then
809	found=false
810	for actual in $output_list
811	do
812	for formal in $s3
813	do
814	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
815	done
816	done
817	if [[ $found = true ]]
818	then
819	(( iout = iout + 1 ))
820	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
821	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
822	fi
823	elif [[ "$s2a" != in && "$s2a" != out ]]
824	then
825	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
826	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
827	locat=connect; exit
828	fi
829	IFS="$IFSALT"
830	fi
831	done < $config_file
832
833	else
834
835
836	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
837	[[ $silent = false ]] && printf "..."
838	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
839	export interpreted_config_file=.icf.$RANDOM
840
841
842
843	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
844	# VERFUEGUNG STELLEN
845	cat > .mrun_environment << %%END%%
846	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
847	config_file = '$config_file', do_remote = '$do_remote',
848	do_trace = '$do_trace', host = '$host',
849	input_list = '$input_list', icf = '$interpreted_config_file',
850	localhost = '$localhost', output_list = '$output_list' /
851
852	%%END%%
853
854	if [[ $localhost_realname = "sx-fep" ]]
855	then
856	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
857	else
858
859	if [[ "$host" != $localhost ]]
860	then
861
862	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
863	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
864	if [[ $? != 0 ]]
865	then
866	printf "\n\n +++ no interpret_config found"
867	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
868	locat=interpret_config; exit
869	fi
870	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
871	$interpret_config_executable
872
873	else
874
875	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
876	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
877	then
878	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
879	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
880	locat=interpret_config; exit
881	else
882	interpret_config${block}.x
883	fi
884
885	fi
886	fi
887	rm .mrun_environment
888
889
890	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
891	chmod u+x $interpreted_config_file
892	export PATH=$PATH:.
893	. $interpreted_config_file
894	rm $interpreted_config_file
895
896	fi
897
898
899	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
900	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
901	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
902	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
903	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
904	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
905	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
906
907
908	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
909	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
910	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
911	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
912	if [[ "$SOURCES_COMPLETE" = "" ]]
913	then
914
915	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
916	# VEREINBART WURDE
917	source_path=""
918	line=""
919	grep "%source_path" $config_file > tmp_mrun
920	while read line
921	do
922	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
923	then
924	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
925	then
926	global_source_path=`echo $line \| cut -d" " -f2`
927	fi
928	fi
929	done < tmp_mrun
930
931	line=""
932	found=false
933	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
934	while read line
935	do
936	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
937	then
938	if [[ $found = true ]]
939	then
940	printf "\n\n +++ more than one source path found in configuration file"
941	printf "\n for local host \"$localhost\" "
942	locat=source_path; exit
943	fi
944	source_path=`echo $line \| cut -d" " -f2`
945	found=true
946	fi
947	done < tmp_mrun
948	rm tmp_mrun
949
950	if [[ "$source_path" = "" ]]
951	then
952	if [[ "$global_source_path" != "" ]]
953	then
954	source_path=$global_source_path
955	else
956	printf "\n\n +++ no source path found in configuration file"
957	printf "\n for local host \"$localhost\" "
958	locat=source_path; exit
959	fi
960	fi
961	eval source_path=$source_path
962
963	if [[ ! -d $source_path ]]
964	then
965	printf "\n\n +++ source path \"$source_path\" on local host"
966	printf "\n \"$localhost\" does not exist"
967	locat=source_path; exit
968	fi
969
970	fi
971
972
973	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
974	# DURCH OPTION -G MITGETEILT)
975	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
976	then
977	global_revision=`svnversion $source_path 2>/dev/null`
978	global_revision="Rev: $global_revision"
979	fi
980
981
982	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
983	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
984	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
985	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
986	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
987	if [[ -n $host && "$host" != $localhost ]]
988	then
989	do_batch=true
990	do_remote=true
991	case $host in
992	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
993	(*) printf "\n"
994	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
995	printf "\n is not available"
996	locat=nqs; (( iec = 0 )); exit;;
997	esac
998	else
999	host=$localhost
1000	fi
1001
1002
1003	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1004	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1005	then
1006
1007	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1008	if [[ ! -n $numprocs ]]
1009	then
1010	printf "\n"
1011	printf "\n +++ option \"-K parallel\" requires additional specification"
1012	printf "\n of the number of processors to be used by"
1013	printf "\n mrun-option \"-X\" or by environment-variable"
1014	printf "\n \"numprocs\" in the configuration file"
1015	locat=numprocs; (( iec = 0 )); exit
1016	fi
1017
1018	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1019	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1020	# GESAMTPROZESSORANZAHL IST
1021	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1022	then
1023	printf "\n"
1024	printf "\n +++ option \"-T\" (tasks per node) is missing"
1025	printf "\n set -T option or define tasks_per_node in the config file"
1026	locat=tasks_per_node; (( iec = 0 )); exit
1027	fi
1028	if [[ $host != lcflow && $host != lcxt5m ]]
1029	then
1030	(( ival = $tasks_per_node ))
1031	(( pes = numprocs ))
1032	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1033	# then
1034	# (( pes = pes - 1 ))
1035	# fi
1036	(( ii = pes / ival ))
1037	if (( pes - ii * ival > 0 ))
1038	then
1039	printf "\n"
1040	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1041	printf "\n divisor of the total number of processors (option \"-X\")"
1042	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1043	locat=tasks_per_node; (( iec = 0 )); exit
1044	fi
1045	fi
1046
1047
1048	# IBMY HAT NUR EINEN KNOTEN
1049	if [[ $host = ibmy ]]
1050	then
1051	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1052	then
1053	printf "\n"
1054	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1055	printf "\n total number of processors (option \"-X\")"
1056	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1057	locat=tasks_per_node; (( iec = 0 )); exit
1058	fi
1059	fi
1060
1061
1062	# SETTINGS FOR SUBJOB-COMMAND
1063	OOPT="-O $threads_per_task"
1064
1065	# GESAMTZAHL DER KNOTEN BESTIMMEN
1066	if [[ "$tasks_per_node" != "" ]]
1067	then
1068	TOPT="-T $tasks_per_node"
1069	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1070	fi
1071
1072	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1073	# SETZEN
1074	if [[ $node_usage = default ]]
1075	then
1076	if [[ $host = ibms ]]
1077	then
1078	node_usage=shared
1079	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1080	then
1081	node_usage=singlejob
1082	else
1083	node_usage=not_shared
1084	fi
1085	fi
1086
1087	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1088	then
1089	printf "\n"
1090	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1091	printf "\n \"shared\" or \"not_shared\""
1092	locat=tasks_per_node; (( iec = 0 )); exit
1093	fi
1094
1095	fi
1096
1097	# PRUEFEN, OB HOSTFILE EXISTIERT
1098	if [[ -n $hostfile ]]
1099	then
1100	if [[ ! -f $hostfile ]]
1101	then
1102	printf "\n"
1103	printf "\n +++ hostfile \"$hostfile\" does not exist"
1104	locat=hostfile; exit
1105	fi
1106	fi
1107
1108	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1109	if [[ $host = ibmy && $do_remote = false ]]
1110	then
1111	if [[ ! -f $HOME/.rhosts ]]
1112	then
1113	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1114	printf "\n\n *** file:"
1115	printf "\n $HOME/.rhosts"
1116	printf "\n was created\n"
1117	fi
1118	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1119	then
1120	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1121	printf "\n\n *** file:"
1122	printf "\n $HOME/.rhosts"
1123	printf "\n was extended by the name of the current host\n"
1124	fi
1125	fi
1126
1127
1128	# Set default value for the maximum number of parallel io streams
1129	if [[ "$maximum_parallel_io_streams" = "" ]]
1130	then
1131	maximum_parallel_io_streams=$numprocs
1132	fi
1133
1134
1135	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1136	if [[ "$scp_port" != "" ]]
1137	then
1138	PORTOPT="-P $scp_port"
1139	SSH_PORTOPT="-p $scp_port"
1140	fi
1141
1142
1143	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1144	if [[ $queue = none ]]
1145	then
1146	case $host in
1147	(ibmh) queue=no_class;;
1148	(ibmkisti) queue=class.32plus;;
1149	(ibmy) queue=parallel;;
1150	(lckiaps) queue=normal;;
1151	(lckyoto) queue=ph;;
1152	(lckyuh) queue=fx-single;;
1153	(lckyut) queue=cx-single;;
1154	(lcsgib) queue=testq;;
1155	(lcsgih) queue=testq;;
1156	(lctit) queue=S;;
1157	(nech) queue=none;;
1158	(necriam) queue=SP;;
1159	(unics) queue=unics;;
1160	esac
1161	fi
1162
1163
1164	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1165	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1166	# ERMITTELN
1167	(( i = 0 ))
1168	while (( i < iin ))
1169	do
1170	(( i = i + 1 ))
1171	(( maxcycle = 0 ))
1172
1173	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1174	if [[ "${actionin[$i]}" = di ]]
1175	then
1176	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1177	# REM-MASCHINE AUSWERTEN
1178	eval filename=${pathin[$i]}/${endin[$i]}
1179	else
1180	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1181	# REM-MASCHINE AUSWERTEN
1182	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1183	fi
1184	eval pathname=${pathin[$i]}
1185
1186	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1187	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1188	then
1189	filename_input=$filename
1190	fi
1191
1192	# PRUEFEN AUF VORHANDENSEIN
1193	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1194	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1195	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1196	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1197	then
1198	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1199	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1200	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1201	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1202	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1203	if [[ "${transin[$i]}" != "locopt" ]]
1204	then
1205	printf "\n\n +++ INPUT-file: "
1206	if [[ "${extin[$i]}" = "" ]]
1207	then
1208	printf "\n $filename"
1209	else
1210	printf "\n $filename.${extin[$i]}"
1211	fi
1212	printf "\n does not exist\n"
1213	locat=input; exit
1214	else
1215	transin[$i]="unavailable"
1216	fi
1217	else
1218
1219	# ZYKLUSNUMMER FESTSTELLEN
1220	ls -1 -d $filename > filelist 2>/dev/null
1221	ls -1 -d $filename.* >> filelist 2>/dev/null
1222	while read zeile
1223	do
1224	cycle=$(echo $zeile \| cut -f2 -d".")
1225	if [[ "$cycle" = "$zeile" ]]
1226	then
1227	(( icycle = 0 ))
1228	elif [[ "$cycle" = "${extin[$i]}" ]]
1229	then
1230	(( icycle = 0 ))
1231	else
1232	(( icycle = $cycle ))
1233	fi
1234	if (( icycle > maxcycle ))
1235	then
1236	(( maxcycle = icycle ))
1237	file_to_be_used=$zeile
1238	fi
1239	done <filelist
1240	rm filelist
1241
1242	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1243	if (( maxcycle > 0 ))
1244	then
1245	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1246	then
1247	filename=${filename}.$maxcycle.${extin[$i]}
1248	else
1249	filename=${filename}.$maxcycle
1250	fi
1251	else
1252	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1253	then
1254	filename=${filename}.${extin[$i]}
1255	fi
1256	fi
1257
1258	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1259	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1260	absnamein[$i]=$filename
1261	if (( maxcycle > 0 ))
1262	then
1263	if [[ "${actionin[$i]}" = di ]]
1264	then
1265	frelin[$i]=${endin[$i]}.$maxcycle
1266	else
1267	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1268	fi
1269	else
1270	if [[ "${actionin[$i]}" = di ]]
1271	then
1272	frelin[$i]=${endin[$i]}
1273	else
1274	frelin[$i]=${afname}${endin[$i]}
1275	fi
1276	fi
1277
1278	fi
1279	done
1280
1281	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1282	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1283	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1284	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1285	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1286	(( i = 0 ))
1287	while (( i < iout ))
1288	do
1289	(( i = i + 1 ))
1290	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1291	then
1292	if [[ "${actionout[$i]}" = tr ]]
1293	then
1294	actionout[$i]=""
1295	elif [[ "${actionout[$i]}" = trpe ]]
1296	then
1297	actionout[$i]=pe
1298	elif [[ "${actionout[$i]}" = tra ]]
1299	then
1300	actionout[$i]=a
1301	fi
1302	(( maxcycle = 0 ))
1303	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1304	eval catalogname=${pathout[$i]}
1305	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1306	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1307	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1308	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1309	then
1310
1311	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1312	if cat /dev/null > $filename
1313	then
1314	rm $filename
1315	else
1316
1317	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1318	if [[ ! -d $catalogname ]]
1319	then
1320	if mkdir -p $catalogname
1321	then
1322	printf "\n\n *** directory:"
1323	printf "\n $catalogname"
1324	printf "\n was created\n"
1325	else
1326	printf "\n\n +++ OUTPUT-file:"
1327	printf "\n $filename"
1328	printf "\n cannot be created, because directory does not exist"
1329	printf "\n and cannot be created either"
1330	printf "\n"
1331	locat=output ; exit
1332	fi 2>/dev/null
1333	else
1334	printf "\n\n +++ OUTPUT-file:"
1335	printf "\n $filename"
1336	printf "\n cannot be created, although directory exists"
1337	printf "\n"
1338	locat=output ; exit
1339	fi
1340	fi 2>/dev/null
1341	else
1342
1343	# ZYKLUSNUMMER FESTSTELLEN
1344	ls -1 -d $filename > filelist 2>/dev/null
1345	ls -1 -d $filename.* >> filelist 2>/dev/null
1346	while read zeile
1347	do
1348	cycle=$(echo $zeile \| cut -f2 -d".")
1349	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1350	then
1351	(( icycle = 1 ))
1352	else
1353	(( icycle = $cycle + 1 ))
1354	fi
1355	if (( icycle > maxcycle ))
1356	then
1357	(( maxcycle = icycle ))
1358	fi
1359	done <filelist
1360	rm filelist
1361	fi
1362
1363	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1364	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1365	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1366	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1367	if [[ "${actionout[$i]}" != a ]]
1368	then
1369	if (( maxcycle > 0 ))
1370	then
1371	filename=${filename}.$maxcycle
1372	if cat /dev/null > $filename
1373	then
1374	rm $filename
1375	else
1376	printf "\n +++ OUTPUT-file:"
1377	printf "\n $filename"
1378	printf "\n cannot be created"
1379	locat=output ; exit
1380	fi
1381	fi
1382	else
1383	(( maxcycle = maxcycle - 1 ))
1384	if (( maxcycle > 0 ))
1385	then
1386	filename=${filename}.$maxcycle
1387	fi
1388	fi
1389
1390	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1391	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1392	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1393	pathout[$i]=$filename
1394	if (( maxcycle > 0 ))
1395	then
1396	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1397	else
1398	frelout[$i]=${fname}${endout[$i]}
1399	fi
1400
1401	fi
1402	done
1403
1404
1405	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1406	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1407	then
1408	if [[ "$dvr_inc" = "" ]]
1409	then
1410	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1411	printf "\n This is required for the dvrp_graphics package.\n"
1412	locat=dvr; exit
1413	fi
1414	if [[ "$dvr_lib" = "" ]]
1415	then
1416	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1417	printf "\n This is required for the dvrp_graphics package.\n"
1418	locat=dvr; exit
1419	fi
1420	fi
1421
1422
1423	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1424	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1425	# UEBERSETZT ZU WERDEN)
1426	if [[ "$mainprog" = "" && "$executable" = "" ]]
1427	then
1428	printf "\n +++ neither main program nor executable defined"
1429	locat=source; exit
1430	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1431	then
1432	printf "\n +++ main program as well as executable defined"
1433	locat=source; exit
1434	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1435	then
1436	do_compile=false
1437	fi
1438
1439
1440	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1441	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1442	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1443	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1444	then
1445	rm -rf SOURCES_FOR_RUN_$fname
1446	mkdir SOURCES_FOR_RUN_$fname
1447	fi
1448
1449
1450	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1451	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1452	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1453	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1454	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1455	then
1456
1457	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1458
1459	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1460	then
1461
1462	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1463	source_list=""
1464	cd $source_path
1465
1466
1467	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1468	if [[ ! -d .svn ]]
1469	then
1470	printf "\n\n +++ source directory"
1471	printf "\n \"$source_path\" "
1472	printf "\n is not under control of \"subversion\"."
1473	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1474	fi
1475
1476
1477	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1478	Filenames=""
1479	svn status > tmp_mrun
1480	while read line
1481	do
1482	firstc=`echo $line \| cut -c1`
1483	if [[ $firstc = M \|\| $firstc = "?" ]]
1484	then
1485	Name=`echo "$line" \| cut -c8-`
1486	extension=`echo $Name \| cut -d. -f2`
1487	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1488	then
1489	Filenames="$Filenames "$Name
1490	fi
1491	fi
1492	done < tmp_mrun
1493
1494
1495	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1496	for dateiname in $Filenames
1497	do
1498	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1499	source_list=$source_list"$dateiname "
1500	done
1501
1502	cd - > /dev/null
1503
1504
1505	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1506	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1507	# VORHANDEN
1508	elif [[ "$source_list" != "" && $restart_run != true ]]
1509	then
1510
1511	cd $source_path
1512
1513	for filename in $source_list
1514	do
1515
1516	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1517	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1518	then
1519	printf "\n +++ source code file: $filename"
1520	printf "\n must not contain (\"/\") "
1521	locat=source; exit
1522	fi
1523
1524	if [[ ! -f $filename ]]
1525	then
1526	printf "\n +++ source code file: $filename"
1527	printf "\n does not exist"
1528	locat=source; exit
1529	else
1530	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1531	fi
1532
1533	done
1534
1535	cd - > /dev/null
1536
1537	fi
1538
1539
1540	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1541	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1542	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1543	if [[ $restart_run != true ]]
1544	then
1545
1546	if [[ ! -f "$source_path/$mainprog" ]]
1547	then
1548	printf "\n\n +++ main program: $mainprog"
1549	printf "\n does not exist in source directory"
1550	printf "\n \"$source_path\"\n"
1551	locat=source; exit
1552	else
1553	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1554	then
1555	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1556	source_list=${mainprog}" $source_list"
1557	fi
1558	fi
1559	fi
1560
1561
1562	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1563	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1564	if [[ "$restart_run" != true ]]
1565	then
1566	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1567	if [[ ! -f $makefile ]]
1568	then
1569	printf "\n +++ file \"$makefile\" does not exist"
1570	locat=make; exit
1571	else
1572	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1573	fi
1574	fi
1575
1576
1577	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1578	if [[ $restart_run != true && "$add_source_path" != "" ]]
1579	then
1580
1581	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1582	if [[ ! -d $add_source_path ]]
1583	then
1584	printf "\n\n +++ WARNING: additional source code directory"
1585	printf "\n \"$add_source_path\" "
1586	printf "\n does not exist or is not a directory."
1587	printf "\n No source code will be used from this directory!\n"
1588	add_source_path=""
1589	if [[ $silent == false ]]
1590	then
1591	sleep 3
1592	fi
1593	else
1594
1595	cd $add_source_path
1596	found=false
1597
1598	Names=$(ls -1 *.f90 2>&1)
1599	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1600	Names=$(ls -1 *.F90 2>&1)
1601	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1602	Names=$(ls -1 *.F 2>&1)
1603	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1604	Names=$(ls -1 *.f 2>&1)
1605	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1606	Names=$(ls -1 *.c 2>&1)
1607	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1608
1609	cd - > /dev/null
1610	cd SOURCES_FOR_RUN_$fname
1611
1612	# COPY MAKEFILE IF EXISTING
1613	if [[ -f $add_source_path/Makefile ]]
1614	then
1615	printf "\n\n *** user Makefile from directory"
1616	printf "\n \"$add_source_path\" is used \n"
1617	if [[ $silent == false ]]
1618	then
1619	sleep 1
1620	fi
1621	cp $add_source_path/Makefile .
1622	fi
1623
1624	for dateiname in $AddFilenames
1625	do
1626	if [[ -f $dateiname ]]
1627	then
1628	printf "\n +++ source code file \"$dateiname\" found in additional"
1629	printf "\n source code directory \"$add_source_path\" "
1630	printf "\n but was also given with option \"-s\" which means that it should be taken"
1631	printf "\n from directory \"$source_path\"."
1632	locat=source; exit
1633	fi
1634
1635	cp $add_source_path/$dateiname .
1636	source_list="$source_list $dateiname"
1637
1638	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1639	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1640	then
1641	printf "\n\n +++ user file \"$dateiname\" "
1642	printf "\n is not listed in Makefile \n"
1643	locat=source; exit
1644	else
1645
1646	# Default User-Interface von der Liste entfernen, falls Datei
1647	# ein User-Interface enthaelt
1648	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1649	# then
1650	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1651	# then
1652	# rm -rf user_interface.f90
1653	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1654	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1655	# printf "\n since a user-interface is found in file"
1656	# printf "\n \"$add_source_path/$dateiname\" \n"
1657	# sleep 3
1658	# else
1659	if [[ $found = false ]]
1660	then
1661	found=true
1662	printf "\n\n *** following user file(s) added to the"
1663	printf " files to be translated:\n "
1664	fi
1665	printf "$dateiname "
1666	if [[ $silent == false ]]
1667	then
1668	sleep 0.5
1669	fi
1670
1671	fi
1672	done
1673	[[ $found = true ]] && printf "\n"
1674	cd - > /dev/null
1675	fi
1676	fi
1677
1678
1679	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1680	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1681	if [[ $restart_run != true && -n $package_list ]]
1682	then
1683
1684	cd $source_path
1685
1686	for package in $package_list
1687	do
1688
1689	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1690
1691	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1692	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1693	# LIEFERT
1694	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1695
1696
1697	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1698	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1699	for source_list_name in $package_source_list
1700	do
1701	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1702	then
1703
1704	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1705	ending=`echo $source_list_name \| cut -f2 -d.`
1706	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1707	then
1708	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1709	source_list="$source_list $source_list_name"
1710	fi
1711	fi
1712	done
1713	done
1714
1715	cd - > /dev/null
1716	fi
1717
1718
1719	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1720	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1721	# if [[ "$restart_run" != true ]]
1722	# then
1723	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1724	# if [[ ! -f $makefile ]]
1725	# then
1726	# printf "\n +++ file \"$makefile\" does not exist"
1727	# locat=make; exit
1728	# else
1729	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1730	# fi
1731	# fi
1732
1733	fi # do_compile=true
1734
1735
1736	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1737	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1738	if [[ $do_compile = true ]]
1739	then
1740
1741	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1742	# ZUSAMMENSETZEN
1743	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1744	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1745	then
1746	cpp_options="${cpp_options},-D__ibm=__ibm"
1747	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1748	then
1749	cpp_options="$cpp_options -D__nec"
1750	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1751	then
1752	cpp_options="$cpp_options -D__lc"
1753	else
1754	cpp_options="$cpp_options -D__$localhost"
1755	fi
1756
1757	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1758	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1759	then
1760	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1761	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1762	else
1763	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1764	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1765	fi
1766
1767	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1768	if [[ -n $package_list ]]
1769	then
1770	for package in $package_list
1771	do
1772	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1773	then
1774	if [[ $package != "dvrp_graphics+1PE" ]]
1775	then
1776	cpp_options="${cpp_options},-D__$package=__$package"
1777	else
1778	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1779	export use_seperate_pe_for_dvrp_output=true
1780	fi
1781	else
1782	if [[ $package != "dvrp_graphics+1PE" ]]
1783	then
1784	cpp_options="$cpp_options -D__$package"
1785	else
1786	cpp_options="$cpp_options -D__dvrp_graphics"
1787	export use_seperate_pe_for_dvrp_output=true
1788	fi
1789	fi
1790	done
1791	fi
1792
1793	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1794	if [[ -n $cpp_opts ]]
1795	then
1796	for popts in $cpp_opts
1797	do
1798	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1799	then
1800	cpp_options="${cpp_options},-D__$popts=__$popts"
1801	else
1802	cpp_options="$cpp_options -D__$popts"
1803	fi
1804	done
1805	fi
1806
1807	else
1808
1809
1810	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1811	if [[ $do_remote = false ]]
1812	then
1813	if [[ ! -f $executable ]]
1814	then
1815	printf "\n +++ executable file: $executable"
1816	printf "\n does not exist"
1817	locat=executable; exit
1818	fi
1819	fi
1820	fi
1821
1822
1823	# JOBMODUS FESTSTELLEN
1824	if [[ "$ENVIRONMENT" = BATCH ]]
1825	then
1826	jobmo=BATCH
1827	else
1828	jobmo=INTERACTIVE
1829	fi
1830
1831
1832	# no interactive runs on lctit
1833	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1834	then
1835	printf "\n +++ no interactive runs allowed on host \"$host\" "
1836	printf "\n please submit batch job using mrun option \"-b\" \n"
1837	locat=normal; exit
1838	fi
1839
1840
1841	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1842	# DURCH BENUTZER ANDERWEITIG VEREINBART
1843	if [[ "$compiler_name" = "" ]]
1844	then
1845
1846	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1847	locat=compiler_name; exit
1848
1849	fi
1850
1851
1852	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1853	[[ $localhost = necriam ]] && compiler_name=mpif90
1854
1855
1856
1857	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1858	kennung=$RANDOM
1859	if [[ "$tmp_user_catalog" = "" ]]
1860	then
1861	if [[ $localhost = ibmh ]]
1862	then
1863	tmp_user_catalog=$SCRATCH
1864	elif [[ $localhost = nech ]]
1865	then
1866	tmp_user_catalog=$WRKSHR
1867	else
1868	tmp_user_catalog=/tmp
1869	fi
1870	fi
1871	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1872
1873
1874	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1875	# BESTIMMEN
1876	if [[ "$tmp_data_catalog" = "" ]]
1877	then
1878	if [[ $localhost = nech ]]
1879	then
1880	tmp_data_catalog=$WRKSHR/mrun_restart_data
1881	else
1882	tmp_data_catalog=/tmp/mrun_restart_data
1883	fi
1884	fi
1885
1886
1887	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1888	# ERSETZEN
1889	if [[ $do_remote = false && $do_compile = true ]]
1890	then
1891	eval fopts=\"$fopts\"
1892	eval lopts=\"$lopts\"
1893	fi
1894
1895
1896
1897	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1898	fopts="$fopts $netcdf_inc $dvr_inc"
1899	lopts="$lopts $netcdf_lib $dvr_lib"
1900	ROPTS="$ropts"
1901	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1902	# then
1903	XOPT="-X $numprocs"
1904	# fi
1905
1906
1907
1908	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1909	# GRAMM BENOETIGT
1910	done=false
1911	while [[ $done = false ]]
1912	do
1913	cputime=$cpumax
1914	if (( $cputime == 0 ))
1915	then
1916	if [[ $do_batch = true ]]
1917	then
1918	printf "\n +++ cpu-time is undefined"
1919	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1920	printf "\n >>> "
1921	read cputime 1>/dev/null 2>&1
1922	else
1923	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1924	fi
1925	else
1926	done=true
1927	fi
1928	cpumax=$cputime
1929	done
1930
1931	(( minuten = cputime / 60 ))
1932	(( sekunden = cputime - minuten * 60 ))
1933
1934
1935	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1936	if [[ $do_batch = true ]]
1937	then
1938	done=false
1939	while [[ $done = false ]]
1940	do
1941	if (( memory == 0 ))
1942	then
1943	printf "\n +++ memory demand is undefined"
1944	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1945	printf "\n >>> "
1946	read memory 1>/dev/null 2>&1
1947	else
1948	done=true
1949	fi
1950	done
1951	fi
1952
1953
1954	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1955	if [[ $do_remote = true && -z $remote_username ]]
1956	then
1957	while [[ -z $remote_username ]]
1958	do
1959	printf "\n +++ username on remote host \"$host\" is undefined"
1960	printf "\n >>> Please type username:"
1961	printf "\n >>> "
1962	read remote_username
1963	done
1964	mc="$mc -u$remote_username"
1965	fi
1966
1967	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1968	if [[ "$login_init_cmd" != "" ]]
1969	then
1970	export init_cmds="${login_init_cmd};"
1971	fi
1972
1973
1974	# set module load command and export for subjob
1975	if [[ "$modules" != "" ]]
1976	then
1977	if [[ $host = lctit ]]
1978	then
1979	export module_calls=". $modules"
1980	else
1981	export module_calls="module load ${modules};"
1982	fi
1983	fi
1984
1985	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1986	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1987	then
1988	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1989	then
1990	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1991	fi
1992	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1993	# then
1994	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1995	# echo "*** module_calls = $module_calls"
1996	# fi
1997	fi
1998
1999
2000	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2001	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2002	then
2003	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2004	then
2005	mpilib=mpt
2006	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2007	then
2008	mpilib=mvapich
2009	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2010	then
2011	mpilib=impi
2012	fi
2013	fi
2014
2015
2016
2017	###########################################################################
2018	# HEADER-AUSGABE
2019	###########################################################################
2020
2021
2022	calltime=$(date)
2023	printf "\n"
2024	# [[ $silent = false ]] && clear
2025	printf "#------------------------------------------------------------------------# \n"
2026	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2027	printf "\| \| \n"
2028	spalte1="called on:"; spalte2=$localhost_realname
2029	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2030	if [[ $local_compile = false ]]
2031	then
2032	if [[ $do_remote = true ]]
2033	then
2034	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2035	else
2036	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2037	fi
2038	else
2039	spalte1="compiling test only!"; spalte2=""
2040	fi
2041	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2042	if [[ -n $numprocs ]]
2043	then
2044	if [[ $run_coupled_model = false ]]
2045	then
2046	spalte1="number of PEs:"; spalte2=$numprocs
2047	else
2048	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2049	fi
2050	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2051	fi
2052	if [[ -n $tasks_per_node ]]
2053	then
2054	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2055	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2056	fi
2057	if [[ $maximum_parallel_io_streams != $numprocs ]]
2058	then
2059	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2060	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2061	fi
2062	if [[ $use_openmp = true ]]
2063	then
2064	spalte1="threads per task:"; spalte2="$threads_per_task"
2065	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2066	fi
2067	printf "\| \| \n"
2068	if [[ $do_compile = true ]]
2069	then
2070	if [[ "$mopts" != "" ]]
2071	then
2072	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2074	zeile=$(echo "$mopts" \| cut -c46-)
2075	while [[ "$zeile" != "" ]]
2076	do
2077	spalte1=""
2078	spalte2=$(echo "$zeile" \| cut -c-45)
2079	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2080	zeile=$(echo "$zeile" \| cut -c46-)
2081	done
2082	fi
2083
2084	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2085	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2086	zeile=$(echo "$cpp_options" \| cut -c46-)
2087	while [[ "$zeile" != "" ]]
2088	do
2089	spalte1=""
2090	spalte2=$(echo "$zeile" \| cut -c-45)
2091	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2092	zeile=$(echo "$zeile" \| cut -c46-)
2093	done
2094
2095	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2096	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2097	zeile=$(echo "$fopts" \| cut -c46-)
2098	while [[ "$zeile" != "" ]]
2099	do
2100	spalte1=""
2101	spalte2=$(echo "$zeile" \| cut -c-45)
2102	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2103	zeile=$(echo "$zeile" \| cut -c46-)
2104	done
2105
2106	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2107	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2108	zeile=$(echo "$lopts" \| cut -c46-)
2109	while [[ "$zeile" != "" ]]
2110	do
2111	spalte1=""
2112	spalte2=$(echo "$zeile" \| cut -c-45)
2113	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2114	zeile=$(echo "$zeile" \| cut -c46-)
2115	done
2116
2117	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2119	zeile=$(echo "$modules" \| cut -c46-)
2120	while [[ "$zeile" != "" ]]
2121	do
2122	spalte1=""
2123	spalte2=$(echo "$zeile" \| cut -c-45)
2124	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2125	zeile=$(echo "$zeile" \| cut -c46-)
2126	done
2127
2128	spalte1="main program:"; spalte2=$mainprog
2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2130	else
2131	spalte1=executable:; spalte2=$executable
2132	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2133	fi
2134	printf "\| \| \n"
2135	spalte1="base name of files:"; spalte2=$fname
2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2137	if [[ $fname != $afname ]]
2138	then
2139	spalte1="base name of input files:"; spalte2=$afname
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	fi
2142	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2143	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2144	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2145	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2146
2147	if [[ "$ocean_file_appendix" = true ]]
2148	then
2149	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2150	fi
2151
2152	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2153	then
2154	spalte1="memory demand / PE":; spalte2="$memory MB"
2155	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2156	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2157	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2158	fi
2159
2160	if [[ $do_compile = true ]]
2161	then
2162	printf "\| \| \n"
2163	printf "\| Files to be compiled: \| \n"
2164	zeile=$source_list
2165	while [[ "$zeile" != "" ]]
2166	do
2167	linestart=$(echo $zeile \| cut -c-70)
2168	printf "\| %-70s \| \n" "$linestart"
2169	zeile=$(echo "$zeile" \| cut -c71-)
2170	done
2171	fi
2172	printf "#------------------------------------------------------------------------#"
2173
2174
2175
2176	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2177	if [[ $do_trace = true ]]
2178	then
2179	(( i = 0 ))
2180	while (( i < iin ))
2181	do
2182	(( i = i + 1 ))
2183	if (( i == 1 ))
2184	then
2185	printf "\n\n >>> INPUT-file assignments:\n"
2186	fi
2187	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2188	done
2189	(( i = 0 ))
2190	while (( i < iout ))
2191	do
2192	(( i = i + 1 ))
2193	if (( i == 1 ))
2194	then
2195	printf "\n\n >>> OUTPUT-file assignments:\n"
2196	fi
2197	printf "\n ${localout[$i]} : ${pathout[$i]}"
2198	done
2199	(( i = 0 ))
2200	while (( i < iic ))
2201	do
2202	(( i = i + 1 ))
2203	if (( i == 1 ))
2204	then
2205	printf "\n\n >>> INPUT-commands:\n"
2206	fi
2207	printf "\n ${in_command[$i]}"
2208	done
2209	(( i = 0 ))
2210	while (( i < ioc ))
2211	do
2212	(( i = i + 1 ))
2213	if (( i == 1 ))
2214	then
2215	printf "\n\n >>> OUTPUT-commands:\n"
2216	fi
2217	printf "\n ${out_command[$i]}"
2218	done
2219	fi
2220
2221
2222	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2223	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2224	then
2225	antwort=dummy
2226	printf "\n\n"
2227	printf " >>> everything o.k. (y/n) ? "
2228	while read antwort
2229	do
2230	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2231	then
2232	printf " >>> everything o.k. (y/n) ? "
2233	else
2234	break
2235	fi
2236	done
2237	if [[ $antwort = n \|\| $antwort = N ]]
2238	then
2239	locat=user_abort; (( iec = 0 )); exit
2240	fi
2241	if [[ $do_batch = true ]]
2242	then
2243	printf " >>> batch-job will be created and submitted"
2244	else
2245	if [[ $local_compile = false ]]
2246	then
2247	printf " >>> MRUN will now continue to execute on this machine"
2248	else
2249	printf " >>> a test compilation will now be carried out on this machine"
2250	fi
2251	fi
2252	fi
2253
2254
2255	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2256	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2257	check_depository="${working_directory}/trunk/UTIL"
2258	check_sources="${working_directory}/tmp_check_namelist_files"
2259	skip_check=false
2260
2261	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2262	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2263	then
2264	skip_check=true
2265	reason="run on remote host or parameter file check has not been compiled."
2266	fi
2267	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2268	then
2269	skip_check=true
2270	reason="parameter file check has not been compiled."
2271	fi
2272
2273	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2274	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2275	then
2276	skip_check=true
2277	reason="serial run."
2278	fi
2279
2280	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2281	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2282	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2283	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2284	if [[ $check_namelist_files == false ]]
2285	then
2286	skip_check=true
2287	reason="-z option set."
2288	fi
2289
2290	if [[ $fromhost != $localhost ]]
2291	then
2292	skip_check=true
2293	reason="submitting host is local host."
2294	fi
2295
2296	if [[ $run_coupled_model == true ]]
2297	then
2298	skip_check=true
2299	reason="coupled run."
2300	fi
2301
2302	if [[ $restart_run == true ]]
2303	then
2304	skip_check=true
2305	reason="restart run."
2306	fi
2307
2308	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2309	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2310	last_char=`echo $filename_input \| cut -c $last_char_int`
2311	if [[ "$last_char" == "f" ]]
2312	then
2313	skip_check=true
2314	reason="restart run."
2315	fi
2316
2317	if [[ $skip_check == false ]]
2318	then
2319	tmp_check=${working_directory}/tmp_check
2320
2321	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2322	# NOT NECESSARILY REQUIRED
2323	line=""
2324	found=false
2325	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2326	while read line1
2327	do
2328	line="$line1"
2329	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2330	then
2331	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2332	found=true
2333	fi
2334	done < $tmp_check
2335
2336	if [[ $found = false ]]
2337	then
2338	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2339	fi
2340
2341	rm -rf ${working_directory}/tmp_check
2342
2343	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2344	for item in $input_list
2345	do
2346	if [[ "$item" == "restart" ]]
2347	then
2348	check_restart=1
2349	else
2350	check_restart=0
2351	fi
2352	done
2353
2354	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2355	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2356	then
2357	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2358	locat=check_namelist; exit
2359	fi
2360
2361	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2362	if [[ $check_restart == 1 ]]
2363	then
2364
2365	filenamef="${filename_input}f"
2366	if [[ ! -f $filenamef ]]
2367	then
2368	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2369	check_restart=0
2370	answer=dummy
2371	printf "\n\n"
2372
2373	if [[ $silent == false ]]
2374	then
2375	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2376	do
2377	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2378	read answer
2379	done
2380	if [[ $answer = a \|\| $answer = A ]]
2381	then
2382	printf "\n +++ Aborting...."
2383	locat=normal; exit
2384	fi
2385	fi
2386	else
2387	check_restart=1
2388	fi
2389	fi
2390
2391	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2392	mkdir $check_sources
2393	cd $check_sources
2394
2395
2396	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2397	if [[ -d $add_source_path ]]
2398	then
2399	printf "\n\n *** copying files from $check_depository"
2400	cp $check_depository/check_namelist_files.tar ./
2401
2402	printf "\n\n *** untar of makefile and source files in $check_sources"
2403	tar -xf check_namelist_files.tar > /dev/null 2>&1
2404
2405	printf "\n\n *** adding user code."
2406	cp $add_source_path/* ./
2407	touch check_namelist_files.f90
2408
2409	# GET COMPILER OPTIONS AND PERFORM MAKE
2410	printf "\n\n *** compiling code if necessary...\n"
2411
2412	# workaround for batch jobs on local machine (lcxe6)
2413	if [[ $do_batch == true && $do_remote == false ]]
2414	then
2415	eval $init_cmds
2416	fi
2417
2418	# GET CHECK OPTIONS
2419	line=""
2420	found=false
2421
2422	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2423
2424	while read line1
2425	do
2426
2427	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2428	then
2429	line="$line1"
2430	fi
2431
2432	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2433	then
2434	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2435	line="$line "
2436	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2437	found=true
2438	fi
2439
2440	done < $tmp_check
2441	copts_check="$copts_check -D__check -D__parallel"
2442
2443	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2444
2445	# GET MAKE OUTPUT
2446	if [[ $? != 0 ]]
2447	then
2448	printf "\n +++ error during make."
2449	answer=dummy
2450	printf "\n\n"
2451	if [[ $silent == false ]]
2452	then
2453	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2454	do
2455	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2456	read answer
2457	done
2458	if [[ $answer = a \|\| $answer = A ]]
2459	then
2460	printf "\n +++ Aborting..."
2461	rm -rf $check_sources
2462	locat=normal; exit
2463	else
2464	skip_check=true
2465	fi
2466	else
2467	skip_check=true
2468	fi
2469	fi
2470	else
2471	cp $PALM_BIN/check_namelist_files.x ./
2472	fi
2473
2474	cp $filename_input ./PARIN
2475	if [[ $check_restart == 1 ]]
2476	then
2477	cp $filenamef ./PARINF
2478	fi
2479
2480	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2481	then
2482	printf "\n *** adding topography data"
2483	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2484
2485	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2486	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2487	# WHICH REQUIRE SUFFICIENT MEMORY
2488	ulimit -s unlimited
2489	fi
2490
2491	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2492	cat > ENVPAR << %%END%%
2493	&envpar run_identifier = '$fname', host = '$host',
2494	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2495	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2496	maximum_cpu_time_allowed = ${cpumax}.,
2497	revision = '$global_revision',
2498	local_dvrserver_running = $local_dvrserver_running /
2499
2500	%%END%%
2501
2502	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2503	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2504	then
2505	printf "\n +++ WARNING: check_namelist_files.x not found."
2506	answer=dummy
2507	printf "\n\n"
2508
2509	if [[ $silent == false ]]
2510	then
2511	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2512	do
2513	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2514	read answer
2515	done
2516	if [[ $answer = a \|\| $answer = A ]]
2517	then
2518	printf "\n +++ Aborting..."
2519	rm -rf $check_sources
2520	locat=normal; exit
2521	else
2522	printf "\n *** skipping parameter file check."
2523	fi
2524	fi
2525
2526	elif [[ $skip_check == false ]]
2527	then
2528	# STARTING THE PARAMETER FILE CHECK
2529	printf "\n\n *** starting parameter file check..."
2530
2531	# CHECKING THE P3D FILE
2532	printf "\n\n (1) checking $filename_input"
2533	echo "$numprocs 0 0" > VARIN
2534	errors=`./check_namelist_files.x < VARIN 2>&1`
2535
2536	check_error=false
2537	if [[ "$errors" == "" ]]
2538	then
2539	printf " --> o.k."
2540	else
2541	printf " --> failed."
2542	check_error=true
2543	printf "\n\n $errors"
2544	fi
2545
2546	# CHECKING THE PD3F FILE IF NECESSARY
2547	if [[ $check_restart == 1 && $check_error == false ]]
2548	then
2549	printf "\n\n (2) checking $filenamef"
2550
2551	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2552	# IN &INIPAR LIST
2553	found=false
2554	cat PARINF \| while read line
2555	do
2556	line=$(echo $line\|sed 's/ //g')
2557	if [[ $line == "&inipar" ]]
2558	then
2559	start_search=true
2560	fi
2561
2562	if [[ $start_search == true ]]
2563	then
2564	if [[ $line == "initializing_actions='read_restart_data'" ]]
2565	then
2566	found=true
2567	break
2568	fi
2569	fi
2570
2571	if [[ $line == "/" ]]
2572	then
2573	start_search=false
2574	fi
2575
2576	done
2577
2578	if [[ $found = false ]]
2579	then
2580	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2581	printf "\n in &inipar list in $fname$p3df_suffix."
2582	rm -rf $check_sources
2583	locat=check_namelist; exit
2584	fi
2585
2586	# READ max_user_pr FROM FILES
2587	if [[ -f parin_for_check ]]
2588	then
2589	read max_pr_user < parin_for_check
2590	else
2591	max_user_pr=0
2592	fi
2593
2594	echo "$numprocs 1 $max_pr_user" > VARIN
2595	errors=`./check_namelist_files.x < VARIN 2>&1`
2596
2597	if [[ "$errors" == "" ]]
2598	then
2599	printf " --> o.k."
2600	else
2601	printf " --> failed."
2602	check_error=true
2603	printf "\n\n $errors"
2604	fi
2605	fi
2606
2607	# REPORT ERRORS AND CONTINUE/EXIT
2608	if [[ $check_error == true ]]
2609	then
2610	printf "\n +++ errors found in the parameter file!\n"
2611	answer=dummy
2612	printf "\n\n"
2613
2614	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2615	do
2616	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2617	read answer
2618	done
2619
2620	if [[ $answer = a \|\| $answer = A ]]
2621	then
2622	printf "\n +++ Aborting..."
2623	rm -rf $check_sources
2624	locat=normal; exit
2625	fi
2626	else
2627	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2628	fi
2629	rm -rf $check_sources
2630	fi
2631	else
2632	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2633	fi
2634
2635	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2636	rm -rf $check_sources
2637	cd $working_directory
2638
2639
2640	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2641	# CHENDE AKTIONEN DURCHGEFUEHRT
2642	if [[ $do_batch = false ]]
2643	then
2644
2645
2646	# TEMPORAEREN KATALOG ERZEUGEN
2647	mkdir -p $TEMPDIR
2648	chmod go+rx $TEMPDIR
2649	tmpcreate=true
2650
2651	# set striping on lustre file system
2652	# if [[ $localhost = lcsgih ]]
2653	# then
2654	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2655	# lfs getstripe $TEMPDIR
2656	# fi
2657
2658
2659	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2660	# TEMPORAERES VERZEICHNIS KOPIEREN
2661	if [[ $do_compile = true ]]
2662	then
2663
2664	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2665	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2666	if [[ $localhost = nech ]]
2667	then
2668	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2669	if mkdir -p $TEMPDIR_COMPILE
2670	then
2671	printf "\n *** \"$TEMPDIR_COMPILE\" "
2672	printf "\n is generated as temporary directory for cross compiling\n"
2673	else
2674	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2675	printf "\n needed for cross compilation failed"
2676	locat=compile
2677	exit
2678	fi
2679	else
2680	TEMPDIR_COMPILE=$TEMPDIR
2681	fi
2682
2683
2684	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2685	line=""
2686	grep "%depository_path" $config_file > tmp_mrun
2687	while read line
2688	do
2689	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2690	then
2691	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2692	then
2693	global_depository_path=`echo $line \| cut -d" " -s -f2`
2694	fi
2695	fi
2696	done < tmp_mrun
2697
2698	line=""
2699	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2700	while read line
2701	do
2702	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2703	then
2704	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2705	then
2706	local_depository_path=`echo $line \| cut -d" " -s -f2`
2707	fi
2708	fi
2709	done < tmp_mrun
2710
2711	if [[ "$local_depository_path" = "" ]]
2712	then
2713	if [[ "$global_depository_path" != "" ]]
2714	then
2715	local_depository_path=$global_depository_path
2716	else
2717	printf "\n\n +++ no depository path found in configuration file"
2718	printf "\n for local host \"$localhost\" "
2719	printf "\n please set \"\%depository_path\" in configuration file\n"
2720	locat=config_file; exit
2721	fi
2722	fi
2723	eval local_depository_path=$local_depository_path
2724	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2725	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2726
2727
2728	basename=`echo $mainprog \| cut -f1 -d"."`
2729	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2730	if [[ ! -f $make_depository ]]
2731	then
2732	printf "\n"
2733	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2734	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2735	else
2736	cp $make_depository $TEMPDIR_COMPILE
2737	cd $TEMPDIR_COMPILE
2738	tar -xf $make_depository > /dev/null 2>&1
2739	cd - > /dev/null
2740	fi
2741
2742	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2743
2744	else
2745
2746	cp $executable ${TEMPDIR}/a.out
2747
2748	fi
2749
2750
2751	# WECHSEL IN TEMPORAEREN KATALOG
2752	cd $TEMPDIR
2753	printf "\n *** changed to temporary directory: $TEMPDIR"
2754
2755
2756	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2757	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2758	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2759	# ERMITTELN
2760	(( i = 0 ))
2761	while (( i < iout ))
2762	do
2763	(( i = i + 1 ))
2764	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2765	then
2766	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2767	else
2768	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2769	fi
2770	done
2771
2772
2773	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2774	if [[ $do_compile = true ]]
2775	then
2776
2777
2778	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2779	printf "\n\n\n *** compilation starts \n$striche\n"
2780	printf " *** compilation with make using following options:\n"
2781	printf " make depository: $make_depository"
2782	if [[ "$mopts" != "" ]]
2783	then
2784	printf " make options: $mopts\n"
2785	fi
2786	printf " compilername: $compiler_name\n"
2787	printf " compiler options: $fopts\n"
2788	printf " preprocessor directives: $cpp_options \n"
2789	printf " linker options: $lopts \n"
2790	if [[ "$modules" != "" ]]
2791	then
2792	printf " modules to be load: $modules \n"
2793	fi
2794	printf " source code files: $source_list \n"
2795
2796	if [[ $localhost = nech ]]
2797	then
2798	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2799	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2800	cp $TEMPDIR_COMPILE/a.out .
2801	[[ $? != 0 ]] && compile_error=true
2802	rm -rf $TEMPDIR_COMPILE
2803	elif [[ $localhost = ibmh ]]
2804	then
2805	printf " compiler is called via ssh on \"plogin1\" \n"
2806	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2807	[[ ! -f a.out ]] && compile_error=true
2808	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2809	elif [[ $localhost = lcsgib ]]
2810	then
2811	printf " compiler is called via ssh on \"bicegate0\" \n"
2812	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2813	[[ ! -f a.out ]] && compile_error=true
2814	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2815	elif [[ $localhost = lcsgih ]]
2816	then
2817	printf " compiler is called via ssh on \"hicegate0\" \n"
2818	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2819	[[ ! -f a.out ]] && compile_error=true
2820	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2821	elif [[ $localhost = lcflow ]]
2822	then
2823	printf " compiler is called via ssh on \"flow\" \n"
2824	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2825	[[ ! -f a.out ]] && compile_error=true
2826	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2827	else
2828	[[ "$init_cmds" != "" ]] && eval $init_cmds
2829	[[ "$module_calls" != "" ]] && eval $module_calls
2830	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2831
2832	fi
2833
2834	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2835	then
2836	printf "\n +++ error occured while compiling or linking"
2837	locat=compile
2838
2839	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2840	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2841	# then
2842	exit
2843	# else
2844	# locat=normal
2845	# fi
2846	else
2847	printf "$striche\n *** compilation finished \n"
2848	fi
2849	fi
2850
2851
2852	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2853	if [[ $local_compile = true ]]
2854	then
2855	cd $HOME
2856	rm -rf $TEMPDIR
2857	locat=local_compile; exit
2858	fi
2859
2860
2861	# BEREITSTELLEN DER INPUT-DATEIEN
2862	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2863	(( i = 0 ))
2864	while (( i < iin ))
2865	do
2866	(( i = i + 1 ))
2867	if (( i == 1 ))
2868	then
2869	printf "\n\n *** providing INPUT-files:\n$striche"
2870	fi
2871
2872
2873	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2874	if [[ "${transin[$i]}" = unavailable ]]
2875	then
2876	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2877	then
2878	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2879	printf "\n is not available!"
2880	else
2881	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2882	printf "\n is not available!"
2883	fi
2884	continue
2885	fi
2886
2887	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2888	files_for_pes=false; datentyp=file
2889	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2890	then
2891	files_for_pes=true; datentyp=directory
2892	actionin[$i]=""
2893	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2894	then
2895	actionin[$i]=""
2896	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2897	then
2898	files_for_pes=true; datentyp=directory
2899	actionin[$i]="ar"
2900	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2901	then
2902	actionin[$i]="ar"
2903	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2904	then
2905	files_for_pes=true; datentyp=directory
2906	actionin[$i]="fl"
2907	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2908	then
2909	actionin[$i]="fl"
2910	fi
2911
2912	if [[ $files_for_pes = true ]]
2913	then
2914	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2915	else
2916	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2917	fi
2918
2919	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2920	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2921	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2922	# SERVER ZU HOLEN
2923	if [[ "${actionin[$i]}" = fl ]]
2924	then
2925	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2926	if [[ $files_for_pes = false ]]
2927	then
2928	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2929	then
2930	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2931	got_tmp[$i]=true
2932	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2933	then
2934	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2935	printf "\n *** trying to use backup copy in \"$WORK\" "
2936	cp $WORK/${frelin[$i]} ${localin[$i]}
2937	else
2938	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2939	printf "\n or \"$tmp_data_catalog\" does not exist!"
2940	printf "\n *** trying to get copy from archive"
2941	actionin[$i]=ar
2942	fi
2943	else
2944	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2945	then
2946	mkdir ${localin[$i]}
2947	cd $tmp_data_catalog/${frelin[$i]}
2948	for file in $(ls *)
2949	do
2950	ln $file $TEMPDIR/${localin[$i]}
2951	done
2952	cd $TEMPDIR
2953	got_tmp[$i]=true
2954	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2955	then
2956	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2957	printf "\n *** trying to use backup copy in \"$WORK\" "
2958	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2959	else
2960	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2961	printf "\n or \"$tmp_data_catalog\" does not exist!"
2962	printf "\n *** trying to get copy from archive"
2963	actionin[$i]=ar
2964	fi
2965	fi
2966	fi
2967
2968
2969	# DATEI LIEGT AUF ARCHIV-SERVER
2970	if [[ "${actionin[$i]}" = ar ]]
2971	then
2972
2973	if [[ $files_for_pes = false ]]
2974	then
2975	printf "\n file will be restored from archive-system ($archive_system)!"
2976	else
2977	printf "\n directory will be restored from archive-system ($archive_system)!"
2978	fi
2979
2980	file_restored=false
2981
2982	if [[ $archive_system = asterix ]]
2983	then
2984	do_stagein=true
2985	(( stagein_anz = 0 ))
2986	while [[ $do_stagein = true ]]
2987	do
2988	if [[ $files_for_pes = false ]]
2989	then
2990	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2991	else
2992	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2993	fi
2994	cat STAGEIN_OUTPUT
2995	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2996	then
2997	file_restored=true
2998	do_stagein=false
2999	else
3000	(( stagein_anz = stagein_anz + 1 ))
3001	if (( stagein_anz == 10 ))
3002	then
3003	printf "\n +++ stagein stoped after 10 tries"
3004	locat=stage
3005	exit
3006	fi
3007	printf "\n +++ restoring from archive failed, trying again:"
3008	sleep 900
3009	fi
3010	done
3011	elif [[ $archive_system = DMF ]]
3012	then
3013	if [[ $files_for_pes = false ]]
3014	then
3015	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3016	locat=DMF
3017	exit
3018	else
3019	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3020	cp -r $ARCHIVE/${frelin[$i]} $PWD
3021	file_restored=true
3022	fi
3023	elif [[ $archive_system = tivoli ]]
3024	then
3025	if [[ $files_for_pes = false ]]
3026	then
3027	if [[ $localhost = lcsgih ]]
3028	then
3029	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3030	else
3031	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3032	fi
3033	else
3034	(( inode = 0 ))
3035	while (( inode < nodes ))
3036	do
3037	if [[ $localhost = lcsgih ]]
3038	then
3039	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3040	else
3041	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3042	fi
3043	(( inode = inode + 1 ))
3044	done
3045	fi
3046	file_restored=true
3047	elif [[ $archive_system = ut ]]
3048	then
3049	if [[ $files_for_pes = false ]]
3050	then
3051	cp $UT/${frelin[$i]} .
3052	else
3053	(( inode = 0 ))
3054	while (( inode < nodes ))
3055	do
3056	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3057	(( inode = inode + 1 ))
3058	done
3059	fi
3060	file_restored=true
3061	else
3062	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3063	locat=rearchive
3064	exit
3065	fi
3066
3067	if [[ $file_restored = true ]]
3068	then
3069
3070	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3071	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3072	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3073	if [[ $files_for_pes = false ]]
3074	then
3075	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3076	else
3077	mkdir $tmp_data_catalog/${frelin[$i]}
3078	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3079	fi
3080	got_tmp[$i]=true
3081
3082	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3083	mv ${frelin[$i]} ${localin[$i]}
3084
3085	fi
3086	fi
3087
3088
3089	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3090	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3091	then
3092
3093	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3094	then
3095
3096	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3097	printf "\n file will be provided for $numprocs processors"
3098	mkdir ${localin[$i]}
3099	ival=$numprocs
3100	(( ii = 0 ))
3101	while (( ii <= ival-1 ))
3102	do
3103	if (( ii < 10 ))
3104	then
3105	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3106	elif (( ii < 100 ))
3107	then
3108	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3109	elif (( ii < 1000 ))
3110	then
3111	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3112	else
3113	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3114	fi
3115	(( ii = ii + 1 ))
3116	done
3117
3118	else
3119
3120	if [[ $files_for_pes = true ]]
3121	then
3122
3123	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3124	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3125	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3126	# PER MOVE UMBENANNT WERDEN
3127	printf "\n providing $numprocs files for the respective processors"
3128	mkdir ${localin[$i]}
3129	if [[ $link_local_input = true ]]
3130	then
3131	printf " using ln -f\n"
3132	cd ${absnamein[$i]}
3133	for file in $(ls *)
3134	do
3135	ln -f $file ${localin[$i]}
3136	done
3137	cd $TEMPDIR
3138	fi
3139	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3140	if [[ ! -f "${localin[$i]}/_0000" ]]
3141	then
3142	if [[ $link_local_input = true ]]
3143	then
3144	printf " ln failed for .../_0000, using cp...\n"
3145	fi
3146	cp -r ${absnamein[$i]}/* ${localin[$i]}
3147	fi
3148
3149	else
3150	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3151	if [[ $link_local_input = true ]]
3152	then
3153	printf " using ln -f\n"
3154	ln -f ${absnamein[$i]} ${localin[$i]}
3155	fi
3156	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3157	if [[ ! -f "${localin[$i]}" ]]
3158	then
3159	if [[ $link_local_input = true ]]
3160	then
3161	printf " ln failed, using cp...\n"
3162	fi
3163	cp ${absnamein[$i]} ${localin[$i]}
3164	fi
3165	fi
3166	fi
3167	fi
3168
3169	done
3170	if (( i != 0 ))
3171	then
3172	printf "\n$striche\n *** all INPUT-files provided \n"
3173	fi
3174
3175
3176	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3177	(( i = 0 ))
3178	while (( i < iic ))
3179	do
3180	(( i = i + 1 ))
3181	if (( i == 1 ))
3182	then
3183	printf "\n\n *** execution of INPUT-commands:\n$striche"
3184	fi
3185	printf "\n >>> ${in_command[$i]}"
3186	eval ${in_command[$i]}
3187	if (( i == iic ))
3188	then
3189	printf "\n$striche\n"
3190	fi
3191	done
3192
3193
3194	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3195	cpurest=${cpumax}.
3196
3197
3198	# START DVR STREAMING SERVER
3199	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3200	then
3201	if [[ "$dvr_server" != "" ]]
3202	then
3203
3204	printf "\n\n *** preparing the dvr streaming server configuration file"
3205
3206	# Check, if a dvr server is already running
3207	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3208	if [[ "$running_dvrserver_id" != "" ]]
3209	then
3210
3211	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3212	printf "\n This server is used instead starting a new one!"
3213	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3214
3215	else
3216
3217	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3218	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3219	then
3220	cp ${PALM_BIN}/.dvrserver.config .
3221
3222	# Entering the BASEDIR, UID and GID into this file
3223	user_id=`id -u`
3224	group_id=`id -g`
3225	# & is needed as seperator, because TEMPDIR contains /
3226	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3227	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3228	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3229	mv .dvrserver.3 .dvrserver.config
3230	rm .dvrserver.1 .dvrserver.2
3231
3232	# Start dvr server in background, get his id and print on terminal
3233	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3234	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3235	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3236	local_dvrserver_running=.TRUE.
3237	else
3238	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3239	printf "\n \"$PALM_BIN\" "
3240	locat=dvr
3241	exit
3242	fi
3243
3244	fi
3245
3246	else
3247	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3248	fi
3249	fi
3250
3251
3252	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3253	# LESEN VON PALM)
3254	cat > ENVPAR << %%END%%
3255	&envpar run_identifier = '$fname', host = '$localhost',
3256	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3257	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3258	maximum_cpu_time_allowed = ${cpumax}.,
3259	revision = '$global_revision',
3260	local_dvrserver_running = $local_dvrserver_running /
3261
3262	%%END%%
3263
3264
3265	# PROGRAMMSTART
3266	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3267	PATH=$PATH:$TEMPDIR
3268
3269	# MPI debug option (argument checking, slows down execution due to increased latency)
3270	if [[ "$mpi_debug" = true ]]
3271	then
3272	export MPI_CHECK_ARGS=1
3273	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3274	fi
3275
3276	if [[ "$totalview" = true ]]
3277	then
3278	printf "\n *** totalview debugger will be used"
3279	tv_opt="-tv"
3280	else
3281	tv_opt=""
3282	fi
3283
3284	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3285	then
3286	if [[ "$ENVIRONMENT" = BATCH ]]
3287	then
3288	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3289	then
3290	printf "\n +++ debug is allowed in interactive mode only"
3291	locat=debug
3292	exit
3293	fi
3294	fi
3295	if [[ $localhost = ibmh ]]
3296	then
3297
3298	# SETUP THE IBM MPI ENVIRONMENT
3299	export MP_SHARED_MEMORY=yes
3300	export AIXTHREADS_SCOPE=S
3301	export OMP_NUM_THREADS=$threads_per_task
3302	export AUTHSTATE=files
3303	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3304
3305	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3306	export MP_ADAPTER_USE=shared
3307	export MP_CPU_USE=multiple
3308	export MP_TIMEOUT=1200
3309
3310	unset MP_TASK_AFFINITY
3311
3312	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3313	#(( ii = 1 ))
3314	#while (( ii <= $numprocs ))
3315	#do
3316	# echo $localhost_realname >> hostfile
3317	# (( ii = ii + 1 ))
3318	#done
3319	#export MP_HOSTFILE=hostfile
3320
3321	if [[ "$LOADLBATCH" = yes ]]
3322	then
3323	totalview poe a.out $ROPTS
3324	else
3325	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3326	export TVDSVRLAUNCHCMD=ssh
3327	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3328	fi
3329	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3330	then
3331	# CURRENTLY NO DEBUGGER ON LCSGI
3332	if [[ $run_coupled_model = true ]]
3333	then
3334	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3335	locat=debug
3336	exit
3337	else
3338	echo "no_coupling" > runfile_atmos
3339	fi
3340	(( ii = $numprocs / $threads_per_task ))
3341	export OMP_NUM_THREADS=$threads_per_task
3342	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3343	if [[ $threads_per_task != 1 ]]
3344	then
3345	printf "\n threads per task: $threads_per_task"
3346	fi
3347	printf "\n\n"
3348	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3349	then
3350	# export MPI_LAUNCH_TIMEOUT=360
3351	if [[ "$totalview" = true ]]
3352	then
3353	printf "\n running totalview debugger"
3354	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3355	else
3356	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3357	fi
3358	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3359	then
3360	# ulimit -s 300000 # A too large stack size causes problems
3361	# export MV2_NUM_PORTS=2
3362	# export MV2_CPU_MAPPING=0:1:2:3
3363	if [[ "$totalview" = true ]]
3364	then
3365	printf "\n running totalview debugger"
3366	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3367	else
3368	mpiexec ./a.out $ROPTS < runfile_atmos
3369	fi
3370	fi
3371	else
3372	printf "\n +++ no debug available on \"$localhost\" "
3373	printf "\n or not implemented in mrun so far"
3374	locat=debug
3375	exit
3376	fi
3377
3378	# end debug mode
3379	else
3380
3381	# normal execution
3382	if [[ -n $numprocs ]]
3383	then
3384	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3385	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3386	then
3387	# SETUP THE IBM MPI ENVIRONMENT
3388	if [[ $host != ibmh && $host != ibmkisti ]]
3389	then
3390	export MP_SHARED_MEMORY=yes
3391	export AIXTHREAD_SCOPE=S
3392	export OMP_NUM_THREADS=$threads_per_task
3393	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3394	export AUTHSTATE=files
3395	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3396	# export MP_PRINTENV=yes
3397
3398	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3399	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3400	export MP_WAIT_MODE=poll
3401	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3402	fi
3403
3404	if [[ $host = ibmkisti ]]
3405	then
3406	export LANG=en_US
3407	export MP_SHARED_MEMORY=yes
3408	if [[ $threads_per_task = 1 ]]
3409	then
3410	export MP_SINGLE_THREAD=yes
3411	export MEMORY_AFFINITY=MCM
3412	else
3413	export OMP_NUM_THREADS=$threads_per_task
3414	fi
3415	fi
3416
3417	if [[ "$LOADLBATCH" = yes ]]
3418	then
3419	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3420	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3421	then
3422	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3423	else
3424	if [[ $run_coupled_model = false ]]
3425	then
3426	if [[ "$ocean_file_appendix" = true ]]
3427	then
3428	echo "precursor_ocean" > runfile_atmos
3429	else
3430	echo "precursor_atmos" > runfile_atmos
3431	fi
3432	else
3433	(( iia = $numprocs_atmos / $threads_per_task ))
3434	(( iio = $numprocs_ocean / $threads_per_task ))
3435	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3436	printf "\n using $coupled_mode coupling"
3437	printf "\n\n"
3438	echo "coupled_run $iia $iio" > runfile_atmos
3439	fi
3440	poe ./a.out $ROPTS < runfile_atmos
3441	fi
3442	else
3443	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3444	then
3445	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3446	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3447	then
3448	if [[ -f $hostfile ]]
3449	then
3450	cp $hostfile hostfile
3451	else
3452	(( ii = 1 ))
3453	while (( ii <= $numprocs ))
3454	do
3455	echo $localhost_realname >> hostfile
3456	(( ii = ii + 1 ))
3457	done
3458	fi
3459	export MP_HOSTFILE=hostfile
3460	if [[ $run_coupled_model = false ]]
3461	then
3462	if [[ "$ocean_file_appendix" = true ]]
3463	then
3464	echo "precursor_ocean" > runfile_atmos
3465	else
3466	echo "precursor_atmos" > runfile_atmos
3467	fi
3468	else
3469	(( iia = $numprocs_atmos / $threads_per_task ))
3470	(( iio = $numprocs_ocean / $threads_per_task ))
3471	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3472	printf "\n using $coupled_mode coupling"
3473	printf "\n\n"
3474	echo "coupled_run $iia $iio" > runfile_atmos
3475	fi
3476	if [[ $localhost = ibmy ]]
3477	then
3478	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3479	else
3480	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3481	fi
3482
3483	else
3484	if [[ "$host_file" = "" ]]
3485	then
3486	printf "\n +++ no hostfile given in configuration file"
3487	locat=config_file
3488	exit
3489	else
3490	eval host_file=$host_file
3491	fi
3492	export MP_HOSTFILE=$host_file
3493	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3494	fi
3495	fi
3496	elif [[ $host = nech \|\| $host = necriam ]]
3497	then
3498	(( ii = nodes ))
3499	if [[ $ii = 1 ]]
3500	then
3501	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3502	export MPIPROGINF=YES
3503	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3504	echo "*** execution on single node with mpirun"
3505	mpirun -np $numprocs ./a.out $ROPTS
3506	else
3507	(( i = 0 ))
3508	while (( i < ii ))
3509	do
3510	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3511	(( i = i + 1 ))
3512	done
3513
3514	echo "#!/bin/sh" > mpi_exec_shell
3515	echo " " >> mpi_exec_shell
3516	echo "set -u" >> mpi_exec_shell
3517	echo "F_ERRCNT=0" >> mpi_exec_shell
3518	echo "MPIPROGINV=YES" >> mpi_exec_shell
3519	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3520	echo "cpurest=$cpurest" >> mpi_exec_shell
3521	echo "fname=$fname" >> mpi_exec_shell
3522	echo "localhost=$localhost" >> mpi_exec_shell
3523	echo "return_addres=$return_addres" >> mpi_exec_shell
3524	echo "return_username=$return_username" >> mpi_exec_shell
3525	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3526	echo "write_binary=$write_binary" >> mpi_exec_shell
3527	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3528	echo " " >> mpi_exec_shell
3529	echo "export F_ERRCNT" >> mpi_exec_shell
3530	echo "export MPIPROGINV" >> mpi_exec_shell
3531	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3532	echo "export cpurest" >> mpi_exec_shell
3533	echo "export fname" >> mpi_exec_shell
3534	echo "export localhost" >> mpi_exec_shell
3535	echo "export return_addres" >> mpi_exec_shell
3536	echo "export return_username" >> mpi_exec_shell
3537	echo "export tasks_per_node" >> mpi_exec_shell
3538	echo "export write_binary" >> mpi_exec_shell
3539	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3540	echo " " >> mpi_exec_shell
3541	echo "exec ./a.out" >> mpi_exec_shell
3542
3543	chmod u+x mpi_exec_shell
3544	export MPIPROGINF=YES
3545	mpirun -f multinode_config &
3546	wait
3547
3548	fi
3549	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3550	then
3551
3552	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3553	# DOES NOT EXIST
3554	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3555	then
3556	if [[ -f $hostfile ]]
3557	then
3558	cp $hostfile hostfile
3559	(( ii = $numprocs / $threads_per_task ))
3560	else
3561	(( ii = 1 ))
3562	while (( ii <= $numprocs / $threads_per_task ))
3563	do
3564	echo $localhost_realname >> hostfile
3565	(( ii = ii + 1 ))
3566	done
3567	fi
3568	eval zeile=\"`head -n $ii hostfile`\"
3569	printf "\n *** running on: $zeile"
3570	fi
3571
3572	(( ii = $numprocs / $threads_per_task ))
3573	export OMP_NUM_THREADS=$threads_per_task
3574	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3575	if [[ $threads_per_task != 1 ]]
3576	then
3577	# increase stack size to unlimited, because large runs
3578	# may abort otherwise
3579	ulimit -Ss unlimited
3580	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3581	fi
3582	if [[ $run_coupled_model = false ]]
3583	then
3584	if [[ "$ocean_file_appendix" = true ]]
3585	then
3586	echo "precursor_ocean" > runfile_atmos
3587	else
3588	echo "precursor_atmos" > runfile_atmos
3589	fi
3590	printf "\n\n"
3591	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3592	then
3593	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3594	then
3595	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3596	# export MPI_DSM_DISTRIBUTE=1
3597	# MPI_DSM_CPULIST: pin MPI processes to cores
3598	if [[ $use_openmp = false ]]
3599	then
3600	if [[ "$sgi_feature" = ice2 ]]
3601	then
3602	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3603	else
3604	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3605	fi
3606	else
3607	unset MPI_DSM_CPULIST
3608	fi
3609	# MPI_IB_RAILS: use both IB rails on ICE2
3610	export MPI_BUFS_PER_HOST=512
3611	export MPI_IB_RAILS=2
3612	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3613	export MPI_CONNECTIONS_THRESHOLD=8192
3614	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3615	export MPI_TYPE_DEPTH=20
3616	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3617	export MPI_GROUP_MAX=64
3618	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3619	if [[ $use_openmp = true ]]
3620	then
3621	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3622	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3623	else
3624	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3625	fi
3626
3627	# next is test for openmp usage
3628	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3629	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3630	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3631	then
3632	export MV2_NUM_PORTS=2
3633	# The default setting of MV2_CPU_MAPPING gives best results
3634	# export MV2_ENABLE_AFFINITY=1
3635	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3636	# if [[ "$sgi_feature" = ice2 ]]
3637	# then
3638	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3639	# else
3640	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3641	# fi
3642	if [[ $use_openmp = true ]]
3643	then
3644	unset MV2_CPU_MAPPING
3645	export MV2_ENABLE_AFFINITY=0
3646	fi
3647	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3648	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3649	if [[ $use_openmp = true ]]
3650	then
3651	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3652	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3653	else
3654	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3655	fi
3656	elif [[ "$mpilib" = impi ]]
3657	then
3658	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3659	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3660	fi
3661	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3662	then
3663	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3664	elif [[ $host = lcflow ]]
3665	then
3666	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3667	elif [[ $host = lcsb ]]
3668	then
3669	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3670	elif [[ $host = lckiaps ]]
3671	then
3672	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3673	elif [[ $host = lckyu* ]]
3674	then
3675	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3676	else
3677	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3678	fi
3679	else
3680
3681	# currently there is no full MPI-2 support on ICE and XT4
3682	(( iia = $numprocs_atmos / $threads_per_task ))
3683	(( iio = $numprocs_ocean / $threads_per_task ))
3684	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3685	printf "\n using $coupled_mode coupling"
3686	printf "\n\n"
3687
3688	if [[ $coupled_mode = "mpi2" ]]
3689	then
3690	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3691	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3692	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3693	then
3694
3695	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3696	then
3697	# export MPI_LAUNCH_TIMEOUT=360
3698	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3699	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3700	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3701	then
3702	# ulimit -s 300000 # A too large stack size causes problems
3703	# export MV2_NUM_PORTS=2
3704	# export MV2_CPU_MAPPING=0:1:2:3
3705	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3706	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3707	fi
3708
3709	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3710	then
3711
3712	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3713	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3714
3715	else
3716	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3717	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3718	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3719	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3720	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3721	fi
3722	wait
3723
3724	else
3725
3726	echo "coupled_run $iia $iio" > runfile_atmos
3727	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3728	then
3729
3730	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3731	then
3732	# export MPI_LAUNCH_TIMEOUT=360
3733	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3734	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3735	then
3736	# ulimit -s 300000 # A too large stack size causes problems
3737	# export MV2_NUM_PORTS=2
3738	# export MV2_CPU_MAPPING=0:1:2:3
3739	mpiexec ./a.out $ROPTS < runfile_atmos
3740	fi
3741
3742	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3743	then
3744
3745	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3746
3747	elif [[ $host = lck \|\| $host = lckordi ]]
3748	then
3749
3750	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3751
3752	elif [[ $host = lckyu* ]]
3753	then
3754
3755	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3756
3757	fi
3758	wait
3759	fi
3760
3761	fi
3762	elif [[ $host = lckyoto ]]
3763	then
3764	set -xv
3765	export P4_RSHCOMMAND=plesh
3766	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3767	if [[ "$ENVIRONMENT" = BATCH ]]
3768	then
3769	if [[ "$cond2" = fujitsu ]]
3770	then
3771	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3772	elif [[ "cond2" = pgi ]]
3773	then
3774	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3775	else
3776	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3777	fi
3778	else
3779	if [[ "$cond2" = "" ]]
3780	then
3781	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3782	else
3783	mpirun -np $numprocs ./a.out $ROPTS
3784	fi
3785	fi
3786	set +xv
3787	elif [[ $host = lctit ]]
3788	then
3789	export OMP_NUM_THREADS=$threads_per_task
3790	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3791	if [[ "$threads_per_task" != 1 ]]
3792	then
3793	export MV2_ENABLE_AFFINITY=0
3794	fi
3795	echo "----- PBS_NODEFILE content:"
3796	cat $PBS_NODEFILE
3797	echo "-----"
3798	(( ii = $numprocs / $threads_per_task ))
3799	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3800	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3801	else
3802	mpprun -n $numprocs a.out $ROPTS
3803	fi
3804	[[ $? != 0 ]] && execution_error=true
3805
3806
3807	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3808	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3809	then
3810	apprentice
3811	fi
3812	else
3813	a.out $ROPTS
3814	fi
3815	fi
3816	if [[ $? != 0 \|\| $execution_error = true ]]
3817	then
3818
3819	# ABBRUCH BEI LAUFZEITFEHLER
3820	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3821	printf "\n +++ runtime error occured"
3822	locat=execution
3823	exit
3824	else
3825	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3826	printf "\n$striche\n *** execution finished \n"
3827
3828	# Stop the dvr streaming server and process the dvr output in order
3829	# to create dvrs- and html-files containing all streams
3830	if [[ "$dvrserver_id" != "" ]]
3831	then
3832	kill $dvrserver_id
3833	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3834
3835	# If there is a directory, data have been output by the
3836	# streaming server. Otherwise, user has chosen dvrp_output=local
3837	if [[ -d DATA_DVR ]]
3838	then
3839
3840	# Add the current dvr configuration file to the dvr output
3841	# directory
3842	cp .dvrserver.config DATA_DVR
3843
3844	# Process the dvr output (option -s for also generating
3845	# sequence mode data)
3846	process_dvr_output -d DATA_DVR -f $fname -s
3847
3848	else
3849
3850	# Process the local output
3851	process_dvr_output -l -d DATA_DVR -f $fname
3852
3853	fi
3854
3855	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3856	then
3857
3858	# Process dvr output generated in local mode (dvrp_output=local)
3859	process_dvr_output -l -d DATA_DVR -f $fname
3860
3861	fi
3862	fi
3863
3864
3865
3866	# Call of combine_plot_fields in order to merge single files written
3867	# by each PE into one file.
3868	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3869	then
3870	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3871	printf "\n 2d- and/or 3d-data may be incomplete!"
3872	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3873	elif [[ "$combine_plot_fields" == true ]]
3874	then
3875	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3876	combine_plot_fields${block}.x
3877	else
3878	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3879	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3880	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3881	fi
3882
3883
3884
3885	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3886	(( i = 0 ))
3887	while (( i < ioc ))
3888	do
3889	(( i = i + 1 ))
3890	if (( i == 1 ))
3891	then
3892	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3893	fi
3894	printf "\n >>> ${out_command[$i]}"
3895	eval ${out_command[$i]}
3896	if (( i == ioc ))
3897	then
3898	printf "\n$striche\n"
3899	fi
3900	done
3901
3902
3903	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3904	if [[ $do_trace = true ]]
3905	then
3906	printf "\n\n"
3907	ls -al
3908	fi
3909
3910
3911
3912	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3913	(( i = 0 ))
3914	while (( i < iout ))
3915	do
3916	(( i = i + 1 ))
3917	if (( i == 1 ))
3918	then
3919	printf "\n\n *** saving OUTPUT-files:\n$striche"
3920	fi
3921
3922	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3923	files_for_pes=false; filetyp=file
3924	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3925	then
3926	files_for_pes=true; filetyp=directory
3927	actionout[$i]=""
3928	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3929	then
3930	actionout[$i]=""
3931	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3932	then
3933	files_for_pes=true; filetyp=directory
3934	actionout[$i]="ar"
3935	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3936	then
3937	actionout[$i]="ar"
3938	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3939	then
3940	files_for_pes=true; filetyp=directory
3941	actionout[$i]="fl"
3942	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3943	then
3944	actionout[$i]="fl"
3945	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3946	then
3947	files_for_pes=true; filetyp=directory
3948	actionout[$i]="tr"
3949	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3950	then
3951	actionout[$i]="tr"
3952	fi
3953
3954	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3955	then
3956	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3957	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3958	then
3959	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3960	else
3961
3962
3963	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3964	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3965	# REMOTE-RECHNUNGEN
3966	if [[ "${actionout[$i]}" = tr ]]
3967	then
3968	if [[ $localhost != $fromhost ]]
3969	then
3970	if [[ $files_for_pes = false ]]
3971	then
3972	cps=""
3973	cst=""
3974	else
3975	cps=-c
3976	cst="/"
3977	fi
3978	if [[ $localhost = nech ]]
3979	then
3980
3981	# TRANSFER IN EIGENSTAENDIGEM JOB
3982	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3983	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3984	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3985	if [[ $files_for_pes = false ]]
3986	then
3987	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3988	else
3989	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3990	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3991	fi
3992
3993	echo "set -x" > transfer_${localout[$i]}
3994	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3995
3996	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3997	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3998	printf "\n or higher cycle\n"
3999	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4000
4001	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4002
4003	if [[ $localhost = nech ]]
4004	then
4005	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4006	else
4007	if [[ "$LOGNAME" = b323013 ]]
4008	then
4009	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4010	else
4011	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4012	fi
4013	fi
4014
4015	else
4016
4017	# TRANSFER INNERHALB DIESES JOBS
4018	transfer_failed=false
4019	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4020	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4021	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4022	[[ $? != 0 ]] && transfer_failed=true
4023
4024	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4025	# LOKALER MASCHINE ANLEGEN
4026	if [[ $transfer_failed = true ]]
4027	then
4028	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4029	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4030
4031	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4032	# ANLEGEN.
4033	eval local_catalog=${pathout[$i]}
4034	if [[ ! -d $local_catalog ]]
4035	then
4036	printf " *** local directory does not exist. Trying to create:\n"
4037	printf " $local_catalog \n"
4038	mkdir -p $local_catalog
4039	fi
4040	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4041	transfer_problems=true
4042	fi
4043	fi
4044	else
4045
4046	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4047	actionout[$i]=""
4048	fi
4049	fi
4050
4051
4052	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4053	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4054	# REMOTE-RECHNUNGEN
4055	if [[ "${actionout[$i]}" = tra ]]
4056	then
4057	if [[ $localhost != $fromhost ]]
4058	then
4059	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4060	then
4061
4062	# TRANSFER IN EIGENSTAENDIGEM JOB
4063	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4064	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4065	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4066	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4067
4068	echo "set -x" > transfer_${localout[$i]}
4069	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4070
4071	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4072	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4073	printf "\n or higher cycle\n"
4074	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4075
4076	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4077
4078	if [[ $localhost = nech ]]
4079	then
4080	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4081	else
4082	if [[ $LOGNAME = b323013 ]]
4083	then
4084	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4085	else
4086	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4087	fi
4088	fi
4089
4090	else
4091
4092	# TRANSFER INNERHALB DIESES JOBS
4093	transfer_failed=false
4094	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4095	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4096	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4097	[[ $? != 0 ]] && transfer_failed=true
4098
4099	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4100	# LOKALER MASCHINE ANLEGEN
4101	if [[ $transfer_failed = true ]]
4102	then
4103	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4104	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4105
4106	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4107	# ANLEGEN
4108	eval local_catalog=${pathout[$i]}
4109	if [[ ! -d $local_catalog ]]
4110	then
4111	printf " *** local directory does not exist. Trying to create:\n"
4112	printf " $local_catalog \n"
4113	mkdir -p $local_catalog
4114	fi
4115
4116	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4117	transfer_problems=true
4118	fi
4119	fi
4120	else
4121
4122	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4123	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4124	actionout[$i]=a
4125	fi
4126	fi
4127
4128
4129	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4130	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4131	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4132	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4133	if [[ "${actionout[$i]}" = fl ]]
4134	then
4135	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4136	chmod g+rx $tmp_data_catalog
4137	if [[ $files_for_pes = false ]]
4138	then
4139	printf "\n >>> OUTPUT: ${localout[$i]} to"
4140	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4141	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4142	else
4143	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4144	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4145	mkdir $tmp_data_catalog/${frelout[$i]}
4146	cd ${localout[$i]}
4147	for file in $(ls *)
4148	do
4149	ln -f $file $tmp_data_catalog/${frelout[$i]}
4150	done
4151	cd $TEMPDIR
4152	fi
4153
4154
4155	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4156	if [[ $store_on_archive_system = true ]]
4157	then
4158
4159	if [[ $archive_system = asterix ]]
4160	then
4161	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4162	if [[ $files_for_pes = false ]]
4163	then
4164	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4165	else
4166	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4167	fi
4168	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4169	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4170	echo "then" >> archive_${frelout[$i]}
4171	echo " do_stageout=false" >> archive_${frelout[$i]}
4172	echo "else" >> archive_${frelout[$i]}
4173	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4174	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4175	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4176	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4177	if [[ $files_for_pes = false ]]
4178	then
4179	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4180	else
4181	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4182	fi
4183	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4184	echo "fi" >> archive_${frelout[$i]}
4185	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4186	elif [[ $archive_system = DMF ]]
4187	then
4188	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4189	if [[ $files_for_pes = false ]]
4190	then
4191	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4192	locat=DMF
4193	exit
4194	else
4195	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4196	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4197	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4198	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4199	fi
4200	elif [[ $archive_system = tivoli ]]
4201	then
4202	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4203	if [[ $files_for_pes = false ]]
4204	then
4205	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4206	echo "set -x" >> archive_${frelout[$i]}
4207	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4208	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4209	else
4210
4211	echo "set -x" >> archive_${frelout[$i]}
4212	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4213	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4214	cd $tmp_data_catalog
4215	all_files=`ls -1 ${frelout[$i]}/*`
4216	cd - > /dev/null
4217	(( inode = 0 ))
4218	(( tp1 = tasks_per_node + 1 ))
4219	while (( inode < nodes ))
4220	do
4221	# echo "*** all_files = \"$all_files\" "
4222	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4223	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4224	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4225	# echo "*** files = \"$files\" "
4226	# echo "*** all_files = \"$all_files\" "
4227	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4228	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4229	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4230	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4231	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4232	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4233	(( inode = inode + 1 ))
4234	done
4235	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4236	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4237	fi
4238	elif [[ $archive_system = ut ]]
4239	then
4240	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4241	if [[ $files_for_pes = false ]]
4242	then
4243	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4244	echo "set -x" >> archive_${frelout[$i]}
4245	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4246	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4247	else
4248
4249	echo "set -x" >> archive_${frelout[$i]}
4250	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4251	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4252	cd $tmp_data_catalog
4253	all_files=`ls -1 ${frelout[$i]}/*`
4254	cd - > /dev/null
4255	(( inode = 0 ))
4256	(( tp1 = tasks_per_node + 1 ))
4257	while (( inode < nodes ))
4258	do
4259	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4260	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4261	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4262	(( inode = inode + 1 ))
4263	done
4264	fi
4265	elif [[ $archive_system = none ]]
4266	then
4267	printf " +++ archiving on $localhost not available!\n"
4268	fi
4269
4270	if [[ $archive_system != none ]]
4271	then
4272	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4273	then
4274	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4275	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4276	elif [[ $localhost = nech ]]
4277	then
4278	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4279	fi
4280	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4281	fi
4282	else
4283	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4284	fi
4285
4286
4287	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4288	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4289	if [[ $files_for_pes = false ]]
4290	then
4291	cat /dev/null > ${pathout[$i]}
4292	else
4293	mkdir -p ${pathout[$i]}
4294	fi
4295
4296	fi
4297
4298
4299	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4300	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4301	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4302	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4303	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4304	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4305	if [[ "${actionout[$i]}" = ar ]]
4306	then
4307	if [[ $files_for_pes = false ]]
4308	then
4309	printf "\n >>> OUTPUT: ${localout[$i]} to"
4310	printf "\n ${pathout[$i]}"
4311	printf "\n File will be copied to archive-system ($archive_system) !\n"
4312	else
4313	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4314	printf "\n ${pathout[$i]}"
4315	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4316	fi
4317	mv ${localout[$i]} ${frelout[$i]}
4318
4319	file_saved=false
4320
4321	if [[ $archive_system = asterix ]]
4322	then
4323	do_stageout=true
4324	(( stageout_anz = 0 ))
4325	while [[ $do_stageout = true ]]
4326	do
4327	if [[ $files_for_pes = false ]]
4328	then
4329	stageout ${frelout[$i]} > STAGE_OUTPUT
4330	else
4331	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4332	fi
4333	cat STAGE_OUTPUT
4334	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4335	then
4336	file_saved=true
4337	do_stageout=false
4338	else
4339	if [[ $files_for_pes = false ]]
4340	then
4341	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4342	else
4343	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4344	fi
4345	(( stageout_anz = stageout_anz + 1 ))
4346	if (( stageout_anz == 10 ))
4347	then
4348	printf "\n +++ stoped after 10 unsuccessful tries!"
4349	archive_save=false
4350	do_stageout=false
4351	else
4352	printf "\n *** new try to store on archive after 15 min:"
4353	sleep 900
4354	fi
4355	fi
4356	done
4357	elif [[ $archive_system = DMF ]]
4358	then
4359	if [[ $files_for_pes = false ]]
4360	then
4361	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4362	locat=DMF
4363	exit
4364	else
4365	rm -rf $ARCHIVE/${frelout[$i]}
4366	cp -r ${frelout[$i]} $ARCHIVE
4367	fi
4368	file_saved=true
4369	elif [[ $archive_system = tivoli ]]
4370	then
4371	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4372	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4373	# GELEGT WERDEN
4374	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4375	chmod g+rx $tmp_data_catalog
4376	if [[ $files_for_pes = false ]]
4377	then
4378	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4379	else
4380	mkdir $tmp_data_catalog/${frelout[$i]}
4381	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4382	fi
4383
4384	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4385	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4386	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4387	if [[ $files_for_pes = false ]]
4388	then
4389	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4390	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4391	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4392	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4393	else
4394	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4395	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4396	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4397	fi
4398
4399	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4400	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4401	file_saved=true
4402
4403	elif [[ $archive_system = ut ]]
4404	then
4405	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4406	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4407	# GELEGT WERDEN
4408	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4409	chmod g+rx $tmp_data_catalog
4410	if [[ $files_for_pes = false ]]
4411	then
4412	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4413	else
4414	mkdir $tmp_data_catalog/${frelout[$i]}
4415	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4416	fi
4417
4418	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4419	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4420	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4421	if [[ $files_for_pes = false ]]
4422	then
4423	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4424	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4425	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4426	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4427	else
4428	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4429	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4430	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4431	fi
4432
4433	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4434	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4435	file_saved=true
4436
4437	else
4438	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4439	archive_save=false
4440	fi
4441	if [[ $file_saved = true ]]
4442	then
4443	if [[ $files_for_pes = false ]]
4444	then
4445	cat /dev/null > ${pathout[$i]}
4446	else
4447	mkdir -p ${pathout[$i]}
4448	fi
4449	fi
4450	fi
4451
4452	# APPEND AUF LOKALER MASCHINE
4453	if [[ "${actionout[$i]}" = "a" ]]
4454	then
4455	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4456	then
4457	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4458	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4459	else
4460	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4461	cat ${localout[$i]} >> ${pathout[$i]}
4462	fi
4463	fi
4464
4465	# KOPIEREN AUF LOKALER MASCHINE
4466	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4467	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4468	then
4469
4470	# KOPIEREN AUF EINPROZESSORMASCHINE
4471	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4472	then
4473	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4474	if [[ $link_local_output = true ]]
4475	then
4476	printf " using ln -f\n"
4477	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4478	fi
4479	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4480	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4481	then
4482	if [[ $link_local_output = true ]]
4483	then
4484	printf " ln failed, using cp...\n"
4485	fi
4486	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4487	fi
4488	else
4489	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4490	if [[ $link_local_output = true ]]
4491	then
4492	printf " using ln -f\n"
4493	ln -f ${localout[$i]} ${pathout[$i]}
4494	fi
4495	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4496	if [[ ! -f "${pathout[$i]}" ]]
4497	then
4498	if [[ $link_local_output = true ]]
4499	then
4500	printf " ln failed, using cp...\n"
4501	fi
4502	cp ${localout[$i]} ${pathout[$i]}
4503	fi
4504	fi
4505
4506	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4507	then
4508
4509	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4510	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4511	# WIRD DANN KOPIERT
4512	# PER MOVE UMBENANNT WERDEN
4513	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4514	if [[ $link_local_output = true ]]
4515	then
4516	printf " using ln -f\n"
4517	mkdir ${pathout[$i]}
4518	cd ${localout[$i]}
4519	for file in $(ls *)
4520	do
4521	ln -f $file ${pathout[$i]}
4522	done
4523	cd $TEMPDIR
4524	fi
4525	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4526	if [[ ! -f "${pathout[$i]}/_0000" ]]
4527	then
4528	if [[ $link_local_output = true ]]
4529	then
4530	printf " ln failed for .../_0000, using cp...\n"
4531	fi
4532	cp -r ${localout[$i]} ${pathout[$i]}
4533	fi
4534
4535	fi
4536	fi
4537	done
4538	if (( i != 0 ))
4539	then
4540	if [[ $transfer_problems = true ]]
4541	then
4542	printf "\n$striche\n *** OUTPUT-files saved"
4543	printf "\n +++ WARNING: some data transfers failed! \n"
4544	else
4545	printf "\n$striche\n *** all OUTPUT-files saved \n"
4546	fi
4547	fi
4548
4549
4550	# EVENTUELL FOLGEJOB STARTEN
4551	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4552	if [[ -f CONTINUE_RUN ]]
4553	then
4554
4555	if [[ $archive_save = true ]]
4556	then
4557
4558	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4559	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4560	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4561	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4562	# HANDEN
4563	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4564	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4565	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4566	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4567	then
4568	mc=`echo $mc \| sed 's/#/f/g'`
4569	fi
4570
4571
4572	# JOB STARTEN
4573	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4574	echo " $mc"
4575	printf "\n$striche\n"
4576	if [[ $localhost != $fromhost ]]
4577	then
4578
4579	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4580	then
4581	echo "*** ssh will be used to initiate restart-runs!"
4582	echo " return_addres=\"$return_addres\" "
4583	echo " return_username=\"$return_username\" "
4584	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4585	then
4586	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4587	else
4588	if [[ $localhost = ibmkisti ]]
4589	then
4590	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4591	else
4592	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4593	fi
4594	fi
4595	else
4596	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4597	locat=restart; exit
4598	fi
4599
4600	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4601	# DER AKTUELLE JOB ENDET
4602	if [[ $queue = special1q ]]
4603	then
4604	sleep 120
4605	else
4606	sleep 30
4607	fi
4608
4609	else
4610
4611	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4612	# RUFEN WERDEN, AUSSER AUF lcfimm
4613	cd $LOCAL_PWD
4614	if [[ $localhost = lcfimm ]]
4615	then
4616	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4617	elif [[ $localhost = lckyuh ]]
4618	then
4619	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4620	printf "\n please restart job manually using command:\n"
4621	printf "\n \"$mc\" "
4622	else
4623	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4624	fi
4625	cd - > /dev/null
4626	fi
4627	if [[ $localhost = lckyuh ]]
4628	then
4629	printf "\n$striche\n *** restart-run to be initiated manually\n"
4630	else
4631	printf "\n$striche\n *** restart-run initiated \n"
4632	fi
4633
4634
4635	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4636	# GEHOLT WORDEN SIND, LOESCHEN
4637	(( i = 0 ))
4638	while (( i < iin ))
4639	do
4640	(( i = i + 1 ))
4641	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4642	then
4643	rm -r $tmp_data_catalog/${frelin[$i]}
4644	fi
4645	done
4646
4647	else
4648
4649	printf "\n +++ no restart-run possible, since errors occured"
4650	printf "\n during the archive process"
4651	fi
4652
4653	fi
4654
4655
4656
4657	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4658	if [[ "$email_notification" != "none" ]]
4659	then
4660
4661	if [[ $localhost != $fromhost ]]
4662	then
4663	if [[ -f CONTINUE_RUN ]]
4664	then
4665	echo "PALM restart run necessary" > email_text
4666	echo "description header of actual run:" >> email_text
4667	cat CONTINUE_RUN >> email_text
4668	echo "mrun-command to restart:" >> email_text
4669	echo "$mc" >> email_text
4670	else
4671	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4672	fi
4673	mail $email_notification < email_text
4674	printf "\n *** email notification sent to \"$email_notification\" "
4675	fi
4676	fi
4677
4678
4679
4680	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4681	cd $HOME
4682	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4683
4684	else
4685
4686
4687	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4688	# CHENDE AKTIONEN DURCHGEFUEHRT
4689
4690	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4691	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4692	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4693	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4694	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4695	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4696	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4697	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4698	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4699	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4700	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4701	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4702	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4703	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4704	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4705	if [[ $use_openmp = true ]]
4706	then
4707	mrun_com=${mrun_com}" -O $threads_per_task"
4708	fi
4709	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4710	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4711	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4712	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4713	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4714	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4715	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4716	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4717	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4718	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4719	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4720	if [[ $do_remote = true ]]
4721	then
4722	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4723	fi
4724
4725
4726	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4727	jobfile=jobfile.$RANDOM
4728
4729
4730	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4731	echo "mkdir $TEMPDIR" >> $jobfile
4732	echo "cd $TEMPDIR" >> $jobfile
4733
4734
4735	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4736	if [[ $do_trace = true ]]
4737	then
4738	echo "set -x" >> $jobfile
4739	else
4740	echo "set +vx" >> $jobfile
4741	fi
4742
4743
4744	# initialize the environment and load modules
4745	if [[ "$init_cmds" != "" ]]
4746	then
4747	echo "$init_cmds" >> $jobfile
4748	fi
4749	if [[ "$module_calls" != "" ]]
4750	then
4751	echo "$module_calls" >> $jobfile
4752	fi
4753
4754
4755	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4756	# DATEI FUER DEN JOB
4757	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4758	then
4759
4760	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4761	# KOPIEREN
4762	if [[ $restart_run != true ]]
4763	then
4764	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4765	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4766	fi
4767
4768	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4769	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4770	echo "set -x" >> $jobfile
4771	if [[ $host = $localhost ]]
4772	then
4773	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4774	else
4775	if [[ $host != ibmkisti ]]
4776	then
4777	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4778	else
4779	# on KISTI's IBM firewall is only opened on interactive node
4780	echo "localdir=\`pwd\`" >> $jobfile
4781	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4782	fi
4783	fi
4784	echo "export SOURCES_COMPLETE=true" >> $jobfile
4785
4786	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4787	# ARBEITSVERZEICHNIS VERSCHIEBEN
4788	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4789	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4790	echo "execute_mrun=true" >> $jobfile
4791	echo " " >> $jobfile
4792
4793	else
4794
4795	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4796	# SOWIE GEGEBENENFALLS DES MAKEFILES
4797	if [[ $do_compile = true ]]
4798	then
4799
4800	source_catalog=SOURCES_FOR_RUN_$fname
4801
4802	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4803	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4804	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4805	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4806	echo "export SOURCES_COMPLETE=true" >> $jobfile
4807	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4808
4809	for filename in $source_list
4810	do
4811	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4812	echo "cat > $filename << \"%END%\"" >> $jobfile
4813	cat $source_catalog/$filename >> $jobfile
4814	echo " " >> $jobfile
4815	echo "%END%" >> $jobfile
4816	echo " " >> $jobfile
4817	done
4818
4819	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4820	echo "cat > Makefile << \"%END%\"" >> $jobfile
4821	cat $source_catalog/Makefile >> $jobfile
4822	echo " " >> $jobfile
4823	echo "%END%" >> $jobfile
4824	echo " " >> $jobfile
4825
4826	echo "cd - > /dev/null" >> $jobfile
4827
4828	fi
4829
4830
4831	# ABSPEICHERN DER KONFIGURATIONSDATEI
4832	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4833	# Lines with #$ coming from the svn keyword substitution are
4834	# removed from the config file in order to avoid problems
4835	# with the SGE batch system
4836	echo "cat > $config_file << \"%END%\"" >> $jobfile
4837	if [[ $host = lckyuh ]]
4838	then
4839	# no cross compiler on compute node
4840	sed 's/frtpx/frt/g' $config_file >> $jobfile
4841	else
4842	sed 's/#$.*//g' $config_file >> $jobfile
4843	fi
4844	echo "%END%" >> $jobfile
4845	echo " " >> $jobfile
4846
4847
4848	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4849	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4850	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4851	if [[ $host = lckyuh ]]
4852	then
4853	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4854	else
4855	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4856	fi
4857	echo "%END%" >> $jobfile
4858	echo "chmod u+x $mrun_script_name" >> $jobfile
4859	echo "execute_mrun=true" >> $jobfile
4860	echo " " >> $jobfile
4861
4862	fi
4863
4864
4865	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4866	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4867	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4868	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4869	if [[ $do_remote = true ]]
4870	then
4871	(( i = 0 ))
4872	while (( i < iin ))
4873	do
4874	(( i = i + 1 ))
4875	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4876	if [[ "${transin[$i]}" = job ]]
4877	then
4878	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4879	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4880	echo " " >> $jobfile
4881	echo "%END%" >> $jobfile
4882	else
4883	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4884	fi
4885
4886	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4887	echo "if [[ \$? = 1 ]]" >> $jobfile
4888	echo "then" >> $jobfile
4889	echo " echo \" \" " >> $jobfile
4890	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4891	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4892	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4893	echo " execute_mrun=false" >> $jobfile
4894	echo "fi" >> $jobfile
4895	done
4896	fi
4897
4898	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4899	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4900	echo "LOCAL_PWD=$working_directory" >> $jobfile
4901	echo "export LOCAL_PWD" >> $jobfile
4902
4903	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4904	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4905	echo "export LOCAL_MRUN_PATH" >> $jobfile
4906
4907	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4908	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4909	then
4910	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4911	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4912	then
4913	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4914	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4915	fi
4916
4917	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4918	echo "set -x" >> $jobfile
4919	echo "queue=$queue" >> $jobfile
4920	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4921	echo 'ls -al; echo `pwd`' >> $jobfile
4922	echo "cd \$HOME" >> $jobfile
4923	echo "rm -rf $TEMPDIR" >> $jobfile
4924
4925
4926
4927
4928	# JOB PER SUBJOB STARTEN
4929	if [[ $silent = false ]]
4930	then
4931	printf "\n "
4932	else
4933	printf "\n\n"
4934	fi
4935
4936	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4937	rm -rf $jobfile
4938
4939
4940	fi # ENDE REMOTE-TEIL
4941
4942
4943
4944	# ENDE DER PROZEDUR

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