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source: palm/trunk/SCRIPTS/mrun @ 1102

Last change on this file since 1102 was 1102, checked in by raasch, 12 years ago
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1	#!/bin/bash
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1102 2013-02-17 10:30:22Z raasch $
29	#
30	# 1101 2013-02-17 10:20:21Z raasch
31	# script now running under bash instead of ksh, which required small adjustments
32	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
33	# read from stdin),
34	# cross compilername on lckyuh compute nodes replaced by real compiler name
35	#
36	# 1099 2013-02-10 01:47:43Z raasch
37	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
38	# and for Forwind cluster (lcflow)
39	# small further adjustments for lckyut
40	#
41	# 1094 2013-02-03 01:52:12Z raasch
42	# explicit ssh/scp port can be set in config file with environment variable
43	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
44	# decalpha parts (yonsei) removed
45	#
46	# 2013-02-02 07:06:13Z raasch
47	# adjustments for Kyushu-University computing center (lckyut - tatara)
48	#
49	# 1083 2013-01-04 10:22:09Z maronga
50	# bugfix in parameter file check (read %cpp_options was missing)
51	#
52	# 1069 2012-11-28 16:18:43Z maronga
53	# bugfix: coupling mode was always set to mpi2, typos removed
54	#
55	# 1058 2012-11-21 07:00:35Z raasch
56	# Intel inspector (inspxe) is given the number of PEs instead of the number of
57	# nodes
58	#
59	# 1046 2012-11-09 14:38:45Z maronga
60	# code put under GPL (PALM 3.9)
61	#
62	# 21/03/94 - Siggi - first version finished
63	# 03/03/94 - Siggi - script development started
64	#
65	#--------------------------------------------------------------------------------#
66	# mrun - script for running PALM jobs
67	#--------------------------------------------------------------------------------#
68
69
70
71	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
72
73	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
74	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
75	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
76
77	AddFilenames=""
78	additional_conditions=""
79	add_source_path=""
80	afname=""
81	archive_save=true
82	archive_system=none
83	check_namelist_files=true
84	combine_plot_fields=true
85	compiler_name=""
86	cond1=""
87	cond2=""
88	config_file=.mrun.config
89	coupled_dist=""
90	coupled_mode="mpi1"
91	cpp_opts=""
92	cpp_options=""
93	cpumax=0
94	cpurest=0
95	delete_temporary_catalog=true
96	do_batch=false
97	do_compile=true
98	do_remote=false
99	do_stagein=true
100	do_stageout=true
101	do_trace=false
102	email_notification="none"
103	exclude=""
104	executable=""
105	execution_error=false
106	fimm=false
107	fname=test
108	fromhost=""
109	global_revision=""
110	group_number=none
111	host=""
112	host_file=""
113	hp=""
114	ignore_archive_error=false
115	input_list=""
116	interpreted_config_file=""
117	job_catalog="~/job_queue"
118	job_on_file=""
119	keep_data_from_previous_run=false
120	link_local_input=false
121	link_local_output=false
122	localhost_realname=$(hostname)
123	local_compile=false
124	local_dvrserver_running=.FALSE.
125	locat=normal
126	mainprog=""
127	makefile=""
128	max_par_io_str=""
129	mc=$0
130	while [[ $(echo $mc \| grep -c "/") != 0 ]]
131	do
132	mc=`echo $mc \| cut -f2- -d"/"`
133	done
134	module_calls=""
135	mrun_script_name=$mc
136	netcdf_inc=""
137	netcdf_lib=""
138	netcdf_support=false
139	node_usage=default
140	numprocs=""
141	numprocs_atmos=0
142	numprocs_ocean=0
143	OOPT=""
144	openmp=false
145	output_list=""
146	package_list=""
147	punkte="..........................................................."
148	queue=none
149	read_from_config=""
150	restart_run=false
151	if [[ `hostname` = rte10 ]]
152	then
153	return_addres=133.5.185.60
154	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
155	elif [[ `hostname` = climate0 ]]
156	then
157	return_addres=165.132.26.68
158	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
159	elif [[ `hostname` = urban00 ]]
160	then
161	return_addres=147.46.30.151
162	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
163	else
164	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
165	fi
166	return_password=""
167	return_username=$LOGNAME
168	remotecall=false
169	remote_username=""
170	run_coupled_model=false
171	run_mode=""
172	scirocco=false
173	store_on_archive_system=false
174	striche=" ----------------------------------------------------------------------------"
175	silent=false
176	source_list=""
177	source_path=SOURCE
178	tasks_per_node=""
179	threads_per_task=1
180	tmpcreate=false
181	tmp_data_catalog=""
182	transfer_problems=false
183	usern=$LOGNAME
184	use_openmp=false
185	version="MRUN 2.0 Rev$Rev: 1102 $"
186	working_directory=`pwd`
187	TOPT=""
188	XOPT=""
189	zeit=$( date \| cut -c 12-19 )
190
191	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
192	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
193
194
195
196
197	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
198	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
199
200	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
201	# EXPORTIERT WERDEN
202	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
203	export group_number input_list memory numprocs output_list queue run_mode
204
205
206
207	# FEHLERBEHANDLUNG
208	# BEI EXIT:
209	trap 'rm -rf $working_directory/tmp_mrun
210	if [[ $locat != localhost ]]
211	then
212	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
213	# then
214	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
215	#MRUN-calls on $localhost
216	#
217	#date and time user localhost remotehost termination mrun-command
218	#--------------------------------------------------------------------------------------------------------------------
219	#%STATEND%
220	# chmod 666 ${mrun_path}/statistik/mrun_statistik
221	# fi
222	#
223	# # EINTRAG IN DIE STATISTIK-DATEI
224	# string1=`date` #-L35
225	# string2=$usern #-L12
226	# string3=$localhost_realname #-L12
227	# string4=$host #-L12
228	# string5=$locat #-L12
229	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
230	# then
231	# if [[ $do_batch = true ]]
232	# then
233	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
234	# else
235	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
236	# fi
237	# fi
238	echo " " > /dev/null
239	fi
240
241	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
242	then
243
244	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
245	(( i = 0 ))
246	while (( i < iec ))
247	do
248	(( i = i + 1 ))
249	printf "\n *** Execution of ERROR-command:\n"
250	printf " >>> ${err_command[$i]}\n"
251	eval ${err_command[$i]}
252	done
253	if [[ -n $interpreted_config_file ]]
254	then
255	rm -rf $interpreted_config_file
256	fi
257	if [[ -n .mrun_environment ]]
258	then
259	rm -rf .mrun_environment
260	fi
261	if [[ $tmpcreate = true ]]
262	then
263	printf "\n *** Contents of \"$TEMPDIR\":\n"
264	ls -al; cd
265	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
266	fi
267	if [[ "$dvrserver_id" != "" ]]
268	then
269	echo "+++ killing dvrserver_id=$dvrserver_id"
270	kill $dvrserver_id
271	fi
272	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
273	then
274	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
275	fi
276	printf "\n\n+++ MRUN killed \n\n"
277	elif [[ $locat != control_c ]]
278	then
279	printf "\n\n --> all actions finished\n\n"
280	printf " Bye, bye $usern !!\n\n"
281	fi' exit
282
283
284	# BEI TERMINAL-BREAK:
285	trap 'rm -rf $working_directory/tmp_mrun
286	rm -rf $working_directory/tmp_check_namelist_files
287	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
288	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
289	then
290	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
291	fi
292	if [[ "$dvrserver_id" != "" ]]
293	then
294	echo "+++ killing dvrserver_id=$dvrserver_id"
295	kill $dvrserver_id
296	fi
297	printf "\n+++ MRUN killed by \"^C\" \n\n"
298	locat=control_c
299	exit
300	' 2
301
302
303	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
304	# BEEN SET
305	if [[ "$PALM_BIN" = "" ]]
306	then
307	printf "\n +++ environment variable PALM_BIN has not been set"
308	printf "\n please set it to the directory where the PALM scripts are located"
309	locat=palm_bin; exit
310	fi
311	export PATH=$PALM_BIN:$PATH
312
313
314
315	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
316	# FUER FOLGEJOBS BENOETIGT WIRD
317	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
318	do
319	case $option in
320	(a) afname=$OPTARG;;
321	(A) store_on_archive_system=true; mc="$mc -A";;
322	(b) do_batch=true; mc="$mc -b";;
323	(B) delete_temporary_catalog=false; mc="$mc -B";;
324	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
325	(C) restart_run=true; mc="$mc -C";;
326	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
327	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
328	(F) job_on_file="-D"; mc="$mc -F";;
329	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
330	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
331	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
332	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
333	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
334	(I) ignore_archive_error=true; mc="$mc -I";;
335	(k) keep_data_from_previous_run=true; mc="$mc -k";;
336	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
337	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
338	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
339	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
340	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
341	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
342	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
343	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
344	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
345	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
346	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
347	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
348	(S) read_from_config=false; mc="$mc -S";;
349	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
350	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
351	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
352	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
353	(v) silent=true; mc="$mc -v";;
354	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
355	(x) do_trace=true;set -x; mc="$mc -x";;
356	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
357	(y) ocean_file_appendix=true; mc="$mc -y";;
358	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
359	(z) check_namelist_files=false; mc="$mc -z";;
360	(Z) combine_plot_fields=false; mc="$mc -Z";;
361	(\?) printf "\n +++ unknown option $OPTARG \n"
362	printf "\n --> type \"$0 ?\" for available options \n"
363	locat=parameter;exit;;
364	esac
365	done
366
367
368	# EVTL. POSITIONSPARAMETER EINLESEN
369	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
370	(( to_shift = $OPTIND - 1 ))
371	shift $to_shift
372
373	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
374	if [[ "$1" = "?" ]]
375	then
376	(printf "\n *** mrun can be called as follows:\n"
377	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
378	printf "\n Description of available options:\n"
379	printf "\n Option Description Default-Value"
380	printf "\n -a base name of input files equiv. -d"
381	printf "\n -A archiving when using file-attribute fl"
382	printf "\n -b batch-job on local machine ---"
383	printf "\n -B do not delete temporary directory at end ---"
384	printf "\n -c configuration file .mrun.config"
385	printf "\n -d base name of files attached to program test"
386	printf "\n -D preprocessor(cpp)-directives \"\" "
387	printf "\n -F create remote job file only ---"
388	printf "\n -h execution host $localhost_realname"
389	printf "\n -i INPUT control list \"\" "
390	printf "\n -I archiving errors of previous batch-jobs"
391	printf "\n will be ignored"
392	printf "\n -k keep data from previous run"
393	printf "\n -K additional conditions for controling"
394	printf "\n usage of conditional code and"
395	printf "\n env-variables in configuration file \"\" "
396	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
397	printf "\n -M Makefile name Makefile"
398	printf "\n -n node usage (shared/not_shared) depending on -h"
399	printf "\n -o OUTPUT control list \"\" "
400	printf "\n -O use OpenMP ---"
401	printf "\n -p software package list \"\" "
402	printf "\n -q queue \"$queue\" "
403	printf "\n -r run control list (combines -i -o) \"\" "
404	printf "\n -s filenames of routines to be compiled \"\" "
405	printf "\n must end with .f, .f90, .F, or .c !"
406	printf "\n use \"..\" for more than one file and wildcards"
407	printf "\n -s LM compiles all locally modified files"
408	printf "\n -S config file interpreted by shellscript ---"
409	printf "\n -t allowed cpu-time in seconds (batch) 0"
410	printf "\n -T tasks per node depending on -h"
411	printf "\n -u username on remote machine \"\" "
412	printf "\n -v no prompt for confirmation ---"
413	printf "\n -w maximum parallel io streams as given by -X"
414	printf "\n -x tracing of mrun for debug purposes ---"
415	printf "\n -X # of processors (on parallel machines) 1"
416	printf "\n -y add appendix \"_O\" to all local output"
417	printf "\n files (ocean precursor runs followed by"
418	printf "\n coupled atmosphere-ocean runs) ---"
419	printf "\n -Y run coupled model, \"#1 #2\" with"
420	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
421	printf "\n -z disable a priori parameter file check ---"
422	printf "\n -Z skip combine_plot_fields at the end of "
423	printf "\n the simulation ---"
424	printf "\n "
425	printf "\n Possible values of positional parameter <modus>:"
426	printf "\n \"?\" - this outline \n\n") \| more
427	exit
428	elif [[ "$1" != "" ]]
429	then
430	printf "\n +++ positional parameter $1 unknown \n"
431	locat=parameter; exit
432	fi
433
434
435
436	# KURZE STARTMELDUNG
437	printf "\n*** $version "
438	printf "\n will be executed. Please wait ..."
439
440
441
442	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
443	if [[ ! -f $config_file ]]
444	then
445	printf "\n\n +++ configuration file: "
446	printf "\n $config_file"
447	printf "\n does not exist"
448	locat=connect; exit
449	fi
450
451
452	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
453	line=""
454	grep "%host_identifier" $config_file > tmp_mrun
455	while read line
456	do
457	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
458	then
459	HOSTNAME=`echo $line \| cut -d" " -s -f2`
460	host_identifier=`echo $line \| cut -d" " -s -f3`
461	if [[ $localhost_realname = $HOSTNAME ]]
462	then
463	localhost=$host_identifier
464	break
465	fi
466	fi
467	done < tmp_mrun
468
469	if [[ "$localhost" = "" ]]
470	then
471	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
472	printf "\n for local host \"$localhost_realname\"."
473	printf "\n Please add line"
474	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
475	printf "\n to the configuration file."
476	locat=localhost; exit
477	fi
478
479
480	# HOSTSPEZIFISCHE VARIABLEN SETZEN
481	case $localhost_realname in
482	(r1\|r2\|h01\|b01) archive_system=tivoli;;
483	(cs*) archive_system=ut;;
484	(fimm.bccs.uib.no) fimm=true;;
485	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
486	(scirocco) scirocco=true;;
487	esac
488
489
490
491	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
492	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
493	[[ "$afname" = "" ]] && afname=$fname
494
495
496	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
497	if [[ "$run_mode" != "" ]]
498	then
499	input_list="$input_list $run_mode"
500	output_list="$output_list $run_mode"
501	fi
502
503
504	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
505	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
506	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
507	# STARTET)
508	if [[ "$fromhost" = "" ]]
509	then
510	fromhost=$localhost
511	fi
512
513
514	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
515	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
516	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
517	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
518	if [[ -n $host && "$host" != $localhost ]]
519	then
520	do_batch=true
521	do_remote=true
522	case $host in
523	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
524	(*) printf "\n"
525	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
526	printf "\n is not available"
527	locat=nqs; (( iec = 0 )); exit;;
528	esac
529	else
530	host=$localhost
531	fi
532
533
534	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
535	if [[ -n $additional_conditions ]]
536	then
537	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
538	cond1=`echo $additional_conditions \| cut -d" " -f1`
539	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
540	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
541	if [[ -n $dummy ]]
542	then
543	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
544	locat=options; exit
545	fi
546	block=_$cond1
547	[[ -n $cond2 ]] && block=${block}_$cond2
548	fi
549
550
551	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
552	if [[ $run_coupled_model = true ]]
553	then
554
555	if [[ -n $coupled_dist ]]
556	then
557
558	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
559	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
560
561	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
562	then
563
564	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
565	printf "\n PEs (total) : $numprocs"
566	printf "\n PEs (atmosphere): $numprocs_atmos"
567	printf "\n PEs (ocean) : $numprocs_ocean"
568	locat=coupling; exit
569
570	fi
571
572	else
573
574	(( numprocs_ocean = $numprocs / 2 ))
575	(( numprocs_atmos = $numprocs / 2 ))
576
577	fi
578	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
579
580	# GET coupled_mode FROM THE CONFIG FILE
581	line=""
582	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
583	while read line
584	do
585	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
586	then
587	coupled_mode="mpi2"
588	fi
589	done < tmp_mrun
590
591	fi
592
593
594	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
595	# ARCHIVIERUNG FEHLGESCHLAGEN IST
596	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
597	then
598	if [[ $ignore_archive_error = false ]]
599	then
600	printf "\n +++ data archiving of previous run failed"
601	printf "\n see directory \~/job_queue on remote machine"
602	locat=archive; exit
603	else
604	printf "\n +++ warning: data archiving in a previous run failed"
605	printf "\n MRUN continues, trying to get backup copy"
606	fi
607	fi
608
609
610	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
611	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
612	mrun_memory=$memory
613	mrun_group_number=$group_number
614	mrun_cpumax=$cpumax
615	mrun_numprocs=$numprocs
616
617
618	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
619	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
620	if [[ "$read_from_config" = false ]]
621	then
622
623	[[ $silent = false ]] && printf "\n Reading the configuration file... "
624	while read zeile
625	do
626	[[ $silent = false ]] && printf "."
627
628
629	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
630	# ERSETZEN
631	eval zeile=\"$zeile\"
632
633
634	# INTERPRETATION DER ZEILE
635	if [[ "$(echo $zeile)" = "" ]]
636	then
637	# LEERZEILE, KEINE AKTION
638	continue
639
640	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
641	then
642
643	# ZEILE IST KOMMENTARZEILE
644	true
645
646	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
647	then
648
649	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
650	zeile=$(echo $zeile \| cut -c2-)
651	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
652	var=`echo $zeile \| cut -d" " -f1`
653	value=`echo $zeile \| cut -d" " -s -f2`
654	for_host=`echo $zeile \| cut -d" " -s -f3`
655	for_cond1=`echo $zeile \| cut -d" " -s -f4`
656	for_cond2=`echo $zeile \| cut -d" " -s -f5`
657
658	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
659	then
660
661	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
662	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
663	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
664
665
666	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
667	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
668	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
669	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
670	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
671	# KONFIGURATIONSDATEI
672	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
673	then
674	eval $var=\$value
675
676	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
677	if [[ $do_trace = true ]]
678	then
679	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
680	fi
681	fi
682
683	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
684	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
685	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
686	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
687	if [[ $var = host ]]
688	then
689	if [[ -n $host && "$host" != $localhost ]]
690	then
691	do_batch=true
692	do_remote=true
693	case $host in
694	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
695	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
696	printf "\n is not available"
697	locat=nqs; exit;;
698	esac
699	else
700	host=$localhost
701	fi
702	fi
703
704	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
705	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
706	# DEN PROGRAMMEN BENOETIGT WERDEN
707	export $var
708	fi
709
710
711
712
713	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
714	then
715
716	# ZEILE DEFINIERT ERROR-KOMMANDO
717	(( iec = iec + 1 ))
718	zeile=$(echo $zeile \| cut -c4-)
719	err_command[$iec]="$zeile"
720
721	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
722	then
723
724	# ZEILE DEFINIERT INPUT-KOMMANDO
725	(( iic = iic + 1 ))
726	zeile=$(echo $zeile \| cut -c4-)
727	in_command[$iic]="$zeile"
728
729	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
730	then
731
732	# ZEILE DEFINIERT OUTPUT-KOMMANDO
733	(( ioc = ioc + 1 ))
734	zeile=$(echo $zeile \| cut -c4-)
735	out_command[$ioc]="$zeile"
736
737	else
738
739	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
740	# s2a: in/out - Feld
741	# s2b: loc - Feld (optional)
742	# s2c: tr/ar - Feld (optional)
743	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
744	s1=`echo $zeile \| cut -d" " -f1`
745	s2=`echo $zeile \| cut -d" " -s -f2`
746	s2a=$(echo $s2 \| cut -d":" -f1)
747	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
748	then
749	s2b=""
750	s2c=""
751	else
752	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
753	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
754	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
755	fi
756	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
757	s3=`echo $zeile \| cut -d" " -f3`
758	s4=`echo $zeile \| cut -d" " -s -f4`
759	s5=`echo $zeile \| cut -d" " -s -f5`
760	s6=`echo $zeile \| cut -d" " -s -f6`
761
762
763	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
764	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
765	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
766	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
767	# HANDEN SEIN MUSS (D.H. s2b = loc)
768	IFSALT="$IFS"; IFS="$IFS:"
769	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
770	then
771	found=false
772	for actual in $input_list
773	do
774	for formal in $s3
775	do
776	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
777	done
778	done
779	if [[ $found = true ]]
780	then
781	(( iin = iin + 1 ))
782	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
783	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
784	extin[$iin]=$s6
785	fi
786	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
787	then
788	found=false
789	for actual in $output_list
790	do
791	for formal in $s3
792	do
793	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
794	done
795	done
796	if [[ $found = true ]]
797	then
798	(( iout = iout + 1 ))
799	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
800	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
801	fi
802	elif [[ "$s2a" != in && "$s2a" != out ]]
803	then
804	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
805	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
806	locat=connect; exit
807	fi
808	IFS="$IFSALT"
809	fi
810	done < $config_file
811
812	else
813
814
815	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
816	[[ $silent = false ]] && printf "..."
817	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
818	export interpreted_config_file=.icf.$RANDOM
819
820
821
822	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
823	# VERFUEGUNG STELLEN
824	cat > .mrun_environment << %%END%%
825	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
826	config_file = '$config_file', do_remote = '$do_remote',
827	do_trace = '$do_trace', host = '$host',
828	input_list = '$input_list', icf = '$interpreted_config_file',
829	localhost = '$localhost', output_list = '$output_list' /
830
831	%%END%%
832
833	if [[ $localhost_realname = "sx-fep" ]]
834	then
835	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
836	else
837
838	if [[ "$host" != $localhost ]]
839	then
840
841	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
842	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
843	if [[ $? != 0 ]]
844	then
845	printf "\n\n +++ no interpret_config found"
846	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
847	locat=interpret_config; exit
848	fi
849	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
850	$interpret_config_executable
851
852	else
853
854	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
855	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
856	then
857	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
858	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
859	locat=interpret_config; exit
860	else
861	interpret_config${block}.x
862	fi
863
864	fi
865	fi
866	rm .mrun_environment
867
868
869	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
870	chmod u+x $interpreted_config_file
871	export PATH=$PATH:.
872	. $interpreted_config_file
873	rm $interpreted_config_file
874
875	fi
876
877
878	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
879	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
880	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
881	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
882	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
883	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
884	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
885
886
887	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
888	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
889	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
890	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
891	if [[ "$SOURCES_COMPLETE" = "" ]]
892	then
893
894	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
895	# VEREINBART WURDE
896	source_path=""
897	line=""
898	grep "%source_path" $config_file > tmp_mrun
899	while read line
900	do
901	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
902	then
903	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
904	then
905	global_source_path=`echo $line \| cut -d" " -f2`
906	fi
907	fi
908	done < tmp_mrun
909
910	line=""
911	found=false
912	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
913	while read line
914	do
915	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
916	then
917	if [[ $found = true ]]
918	then
919	printf "\n\n +++ more than one source path found in configuration file"
920	printf "\n for local host \"$localhost\" "
921	locat=source_path; exit
922	fi
923	source_path=`echo $line \| cut -d" " -f2`
924	found=true
925	fi
926	done < tmp_mrun
927	rm tmp_mrun
928
929	if [[ "$source_path" = "" ]]
930	then
931	if [[ "$global_source_path" != "" ]]
932	then
933	source_path=$global_source_path
934	else
935	printf "\n\n +++ no source path found in configuration file"
936	printf "\n for local host \"$localhost\" "
937	locat=source_path; exit
938	fi
939	fi
940	eval source_path=$source_path
941
942	if [[ ! -d $source_path ]]
943	then
944	printf "\n\n +++ source path \"$source_path\" on local host"
945	printf "\n \"$localhost\" does not exist"
946	locat=source_path; exit
947	fi
948
949	fi
950
951
952	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
953	# DURCH OPTION -G MITGETEILT)
954	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
955	then
956	global_revision=`svnversion $source_path 2>/dev/null`
957	global_revision="Rev: $global_revision"
958	fi
959
960
961	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
962	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
963	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
964	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
965	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
966	if [[ -n $host && "$host" != $localhost ]]
967	then
968	do_batch=true
969	do_remote=true
970	case $host in
971	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
972	(*) printf "\n"
973	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
974	printf "\n is not available"
975	locat=nqs; (( iec = 0 )); exit;;
976	esac
977	else
978	host=$localhost
979	fi
980
981
982	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
983	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
984	then
985
986	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
987	if [[ ! -n $numprocs ]]
988	then
989	printf "\n"
990	printf "\n +++ option \"-K parallel\" requires additional specification"
991	printf "\n of the number of processors to be used by"
992	printf "\n mrun-option \"-X\" or by environment-variable"
993	printf "\n \"numprocs\" in the configuration file"
994	locat=numprocs; (( iec = 0 )); exit
995	fi
996
997	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
998	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
999	# GESAMTPROZESSORANZAHL IST
1000	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1001	then
1002	printf "\n"
1003	printf "\n +++ option \"-T\" (tasks per node) is missing"
1004	printf "\n set -T option or define tasks_per_node in the config file"
1005	locat=tasks_per_node; (( iec = 0 )); exit
1006	fi
1007	if [[ $host != lcflow && $host != lcxt5m ]]
1008	then
1009	(( ival = $tasks_per_node ))
1010	(( pes = numprocs ))
1011	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1012	# then
1013	# (( pes = pes - 1 ))
1014	# fi
1015	(( ii = pes / ival ))
1016	if (( pes - ii * ival > 0 ))
1017	then
1018	printf "\n"
1019	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1020	printf "\n divisor of the total number of processors (option \"-X\")"
1021	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1022	locat=tasks_per_node; (( iec = 0 )); exit
1023	fi
1024	fi
1025
1026
1027	# IBMY HAT NUR EINEN KNOTEN
1028	if [[ $host = ibmy ]]
1029	then
1030	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1031	then
1032	printf "\n"
1033	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1034	printf "\n total number of processors (option \"-X\")"
1035	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1036	locat=tasks_per_node; (( iec = 0 )); exit
1037	fi
1038	fi
1039
1040
1041	# SETTINGS FOR SUBJOB-COMMAND
1042	TOPT="-T $tasks_per_node"
1043	OOPT="-O $threads_per_task"
1044
1045	# GESAMTZAHL DER KNOTEN BESTIMMEN
1046	if [[ "$tasks_per_node" != "" ]]
1047	then
1048	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1049	fi
1050
1051	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1052	# SETZEN
1053	if [[ $node_usage = default ]]
1054	then
1055	if [[ $host = ibms ]]
1056	then
1057	node_usage=shared
1058	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1059	then
1060	node_usage=singlejob
1061	else
1062	node_usage=not_shared
1063	fi
1064	fi
1065
1066	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1067	then
1068	printf "\n"
1069	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1070	printf "\n \"shared\" or \"not_shared\""
1071	locat=tasks_per_node; (( iec = 0 )); exit
1072	fi
1073
1074	fi
1075
1076	# PRUEFEN, OB HOSTFILE EXISTIERT
1077	if [[ -n $hostfile ]]
1078	then
1079	if [[ ! -f $hostfile ]]
1080	then
1081	printf "\n"
1082	printf "\n +++ hostfile \"$hostfile\" does not exist"
1083	locat=hostfile; exit
1084	fi
1085	fi
1086
1087	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1088	if [[ $host = ibmy && $do_remote = false ]]
1089	then
1090	if [[ ! -f $HOME/.rhosts ]]
1091	then
1092	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1093	printf "\n\n *** file:"
1094	printf "\n $HOME/.rhosts"
1095	printf "\n was created\n"
1096	fi
1097	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1098	then
1099	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1100	printf "\n\n *** file:"
1101	printf "\n $HOME/.rhosts"
1102	printf "\n was extended by the name of the current host\n"
1103	fi
1104	fi
1105
1106
1107	# Set default value for the maximum number of parallel io streams
1108	if [[ "$maximum_parallel_io_streams" = "" ]]
1109	then
1110	maximum_parallel_io_streams=$numprocs
1111	fi
1112
1113
1114	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1115	if [[ "$scp_port" != "" ]]
1116	then
1117	PORTOPT="-P $scp_port"
1118	SSH_PORTOPT="-p $scp_port"
1119	fi
1120
1121
1122	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1123	if [[ $queue = none ]]
1124	then
1125	case $host in
1126	(ibmh) queue=no_class;;
1127	(ibmkisti) queue=class.32plus;;
1128	(ibmy) queue=parallel;;
1129	(lckiaps) queue=normal;;
1130	(lckyoto) queue=ph;;
1131	(lckyuh) queue=fx-single;;
1132	(lckyut) queue=cx-single;;
1133	(lcsgib) queue=testq;;
1134	(lcsgih) queue=testq;;
1135	(lctit) queue=S;;
1136	(nech) queue=none;;
1137	(necriam) queue=SP;;
1138	(unics) queue=unics;;
1139	esac
1140	fi
1141
1142
1143	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1144	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1145	# ERMITTELN
1146	(( i = 0 ))
1147	while (( i < iin ))
1148	do
1149	(( i = i + 1 ))
1150	(( maxcycle = 0 ))
1151
1152	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1153	if [[ "${actionin[$i]}" = di ]]
1154	then
1155	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1156	# REM-MASCHINE AUSWERTEN
1157	eval filename=${pathin[$i]}/${endin[$i]}
1158	else
1159	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1160	# REM-MASCHINE AUSWERTEN
1161	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1162	fi
1163	eval pathname=${pathin[$i]}
1164
1165	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1166	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1167	then
1168	filename_input=$filename
1169	fi
1170
1171	# PRUEFEN AUF VORHANDENSEIN
1172	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1173	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1174	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1175	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1176	then
1177	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1178	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1179	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1180	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1181	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1182	if [[ "${transin[$i]}" != "locopt" ]]
1183	then
1184	printf "\n\n +++ INPUT-file: "
1185	if [[ "${extin[$i]}" = "" ]]
1186	then
1187	printf "\n $filename"
1188	else
1189	printf "\n $filename.${extin[$i]}"
1190	fi
1191	printf "\n does not exist\n"
1192	locat=input; exit
1193	else
1194	transin[$i]="unavailable"
1195	fi
1196	else
1197
1198	# ZYKLUSNUMMER FESTSTELLEN
1199	ls -1 -d $filename > filelist 2>/dev/null
1200	ls -1 -d $filename.* >> filelist 2>/dev/null
1201	while read zeile
1202	do
1203	cycle=$(echo $zeile \| cut -f2 -d".")
1204	if [[ "$cycle" = "$zeile" ]]
1205	then
1206	(( icycle = 0 ))
1207	elif [[ "$cycle" = "${extin[$i]}" ]]
1208	then
1209	(( icycle = 0 ))
1210	else
1211	(( icycle = $cycle ))
1212	fi
1213	if (( icycle > maxcycle ))
1214	then
1215	(( maxcycle = icycle ))
1216	file_to_be_used=$zeile
1217	fi
1218	done <filelist
1219	rm filelist
1220
1221	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1222	if (( maxcycle > 0 ))
1223	then
1224	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1225	then
1226	filename=${filename}.$maxcycle.${extin[$i]}
1227	else
1228	filename=${filename}.$maxcycle
1229	fi
1230	else
1231	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1232	then
1233	filename=${filename}.${extin[$i]}
1234	fi
1235	fi
1236
1237	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1238	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1239	absnamein[$i]=$filename
1240	if (( maxcycle > 0 ))
1241	then
1242	if [[ "${actionin[$i]}" = di ]]
1243	then
1244	frelin[$i]=${endin[$i]}.$maxcycle
1245	else
1246	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1247	fi
1248	else
1249	if [[ "${actionin[$i]}" = di ]]
1250	then
1251	frelin[$i]=${endin[$i]}
1252	else
1253	frelin[$i]=${afname}${endin[$i]}
1254	fi
1255	fi
1256
1257	fi
1258	done
1259
1260	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1261	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1262	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1263	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1264	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1265	(( i = 0 ))
1266	while (( i < iout ))
1267	do
1268	(( i = i + 1 ))
1269	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1270	then
1271	if [[ "${actionout[$i]}" = tr ]]
1272	then
1273	actionout[$i]=""
1274	elif [[ "${actionout[$i]}" = trpe ]]
1275	then
1276	actionout[$i]=pe
1277	elif [[ "${actionout[$i]}" = tra ]]
1278	then
1279	actionout[$i]=a
1280	fi
1281	(( maxcycle = 0 ))
1282	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1283	eval catalogname=${pathout[$i]}
1284	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1285	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1286	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1287	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1288	then
1289
1290	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1291	if cat /dev/null > $filename
1292	then
1293	rm $filename
1294	else
1295
1296	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1297	if [[ ! -d $catalogname ]]
1298	then
1299	if mkdir -p $catalogname
1300	then
1301	printf "\n\n *** directory:"
1302	printf "\n $catalogname"
1303	printf "\n was created\n"
1304	else
1305	printf "\n\n +++ OUTPUT-file:"
1306	printf "\n $filename"
1307	printf "\n cannot be created, because directory does not exist"
1308	printf "\n and cannot be created either"
1309	printf "\n"
1310	locat=output ; exit
1311	fi 2>/dev/null
1312	else
1313	printf "\n\n +++ OUTPUT-file:"
1314	printf "\n $filename"
1315	printf "\n cannot be created, although directory exists"
1316	printf "\n"
1317	locat=output ; exit
1318	fi
1319	fi 2>/dev/null
1320	else
1321
1322	# ZYKLUSNUMMER FESTSTELLEN
1323	ls -1 -d $filename > filelist 2>/dev/null
1324	ls -1 -d $filename.* >> filelist 2>/dev/null
1325	while read zeile
1326	do
1327	cycle=$(echo $zeile \| cut -f2 -d".")
1328	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1329	then
1330	(( icycle = 1 ))
1331	else
1332	(( icycle = $cycle + 1 ))
1333	fi
1334	if (( icycle > maxcycle ))
1335	then
1336	(( maxcycle = icycle ))
1337	fi
1338	done <filelist
1339	rm filelist
1340	fi
1341
1342	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1343	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1344	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1345	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1346	if [[ "${actionout[$i]}" != a ]]
1347	then
1348	if (( maxcycle > 0 ))
1349	then
1350	filename=${filename}.$maxcycle
1351	if cat /dev/null > $filename
1352	then
1353	rm $filename
1354	else
1355	printf "\n +++ OUTPUT-file:"
1356	printf "\n $filename"
1357	printf "\n cannot be created"
1358	locat=output ; exit
1359	fi
1360	fi
1361	else
1362	(( maxcycle = maxcycle - 1 ))
1363	if (( maxcycle > 0 ))
1364	then
1365	filename=${filename}.$maxcycle
1366	fi
1367	fi
1368
1369	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1370	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1371	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1372	pathout[$i]=$filename
1373	if (( maxcycle > 0 ))
1374	then
1375	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1376	else
1377	frelout[$i]=${fname}${endout[$i]}
1378	fi
1379
1380	fi
1381	done
1382
1383
1384	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1385	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1386	then
1387	if [[ "$dvr_inc" = "" ]]
1388	then
1389	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1390	printf "\n This is required for the dvrp_graphics package.\n"
1391	locat=dvr; exit
1392	fi
1393	if [[ "$dvr_lib" = "" ]]
1394	then
1395	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1396	printf "\n This is required for the dvrp_graphics package.\n"
1397	locat=dvr; exit
1398	fi
1399	fi
1400
1401
1402	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1403	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1404	# UEBERSETZT ZU WERDEN)
1405	if [[ "$mainprog" = "" && "$executable" = "" ]]
1406	then
1407	printf "\n +++ neither main program nor executable defined"
1408	locat=source; exit
1409	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1410	then
1411	printf "\n +++ main program as well as executable defined"
1412	locat=source; exit
1413	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1414	then
1415	do_compile=false
1416	fi
1417
1418
1419	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1420	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1421	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1422	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1423	then
1424	rm -rf SOURCES_FOR_RUN_$fname
1425	mkdir SOURCES_FOR_RUN_$fname
1426	fi
1427
1428
1429	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1430	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1431	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1432	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1433	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1434	then
1435
1436	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1437
1438	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1439	then
1440
1441	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1442	source_list=""
1443	cd $source_path
1444
1445
1446	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1447	if [[ ! -d .svn ]]
1448	then
1449	printf "\n\n +++ source directory"
1450	printf "\n \"$source_path\" "
1451	printf "\n is not under control of \"subversion\"."
1452	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1453	fi
1454
1455
1456	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1457	Filenames=""
1458	svn status > tmp_mrun
1459	while read line
1460	do
1461	firstc=`echo $line \| cut -c1`
1462	if [[ $firstc = M \|\| $firstc = "?" ]]
1463	then
1464	Name=`echo "$line" \| cut -c8-`
1465	extension=`echo $Name \| cut -d. -f2`
1466	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1467	then
1468	Filenames="$Filenames "$Name
1469	fi
1470	fi
1471	done < tmp_mrun
1472
1473
1474	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1475	for dateiname in $Filenames
1476	do
1477	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1478	source_list=$source_list"$dateiname "
1479	done
1480
1481	cd - > /dev/null
1482
1483
1484	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1485	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1486	# VORHANDEN
1487	elif [[ "$source_list" != "" && $restart_run != true ]]
1488	then
1489
1490	cd $source_path
1491
1492	for filename in $source_list
1493	do
1494
1495	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1496	if [[ $(print $filename \| grep -c "/") != 0 ]]
1497	then
1498	printf "\n +++ source code file: $filename"
1499	printf "\n must not contain (\"/\") "
1500	locat=source; exit
1501	fi
1502
1503	if [[ ! -f $filename ]]
1504	then
1505	printf "\n +++ source code file: $filename"
1506	printf "\n does not exist"
1507	locat=source; exit
1508	else
1509	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1510	fi
1511
1512	done
1513
1514	cd - > /dev/null
1515
1516	fi
1517
1518
1519	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1520	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1521	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1522	if [[ $restart_run != true ]]
1523	then
1524
1525	if [[ ! -f "$source_path/$mainprog" ]]
1526	then
1527	printf "\n\n +++ main program: $mainprog"
1528	printf "\n does not exist in source directory"
1529	printf "\n \"$source_path\"\n"
1530	locat=source; exit
1531	else
1532	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1533	then
1534	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1535	source_list=${mainprog}" $source_list"
1536	fi
1537	fi
1538	fi
1539
1540
1541	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1542	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1543	if [[ "$restart_run" != true ]]
1544	then
1545	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1546	if [[ ! -f $makefile ]]
1547	then
1548	printf "\n +++ file \"$makefile\" does not exist"
1549	locat=make; exit
1550	else
1551	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1552	fi
1553	fi
1554
1555
1556	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1557	if [[ $restart_run != true && "$add_source_path" != "" ]]
1558	then
1559
1560	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1561	if [[ ! -d $add_source_path ]]
1562	then
1563	printf "\n\n +++ WARNING: additional source code directory"
1564	printf "\n \"$add_source_path\" "
1565	printf "\n does not exist or is not a directory."
1566	printf "\n No source code will be used from this directory!\n"
1567	add_source_path=""
1568	if [[ $silent == false ]]
1569	then
1570	sleep 3
1571	fi
1572	else
1573
1574	cd $add_source_path
1575	found=false
1576
1577	Names=$(ls -1 *.f90 2>&1)
1578	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1579	Names=$(ls -1 *.F90 2>&1)
1580	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1581	Names=$(ls -1 *.F 2>&1)
1582	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1583	Names=$(ls -1 *.f 2>&1)
1584	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1585	Names=$(ls -1 *.c 2>&1)
1586	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1587
1588	cd - > /dev/null
1589	cd SOURCES_FOR_RUN_$fname
1590
1591	# COPY MAKEFILE IF EXISTING
1592	if [[ -f $add_source_path/Makefile ]]
1593	then
1594	printf "\n\n *** user Makefile from directory"
1595	printf "\n \"$add_source_path\" is used \n"
1596	if [[ $silent == false ]]
1597	then
1598	sleep 1
1599	fi
1600	cp $add_source_path/Makefile .
1601	fi
1602
1603	for dateiname in $AddFilenames
1604	do
1605	if [[ -f $dateiname ]]
1606	then
1607	printf "\n +++ source code file \"$dateiname\" found in additional"
1608	printf "\n source code directory \"$add_source_path\" "
1609	printf "\n but was also given with option \"-s\" which means that it should be taken"
1610	printf "\n from directory \"$source_path\"."
1611	locat=source; exit
1612	fi
1613
1614	cp $add_source_path/$dateiname .
1615	source_list="$source_list $dateiname"
1616
1617	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1618	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1619	then
1620	printf "\n\n +++ user file \"$dateiname\" "
1621	printf "\n is not listed in Makefile \n"
1622	locat=source; exit
1623	else
1624
1625	# Default User-Interface von der Liste entfernen, falls Datei
1626	# ein User-Interface enthaelt
1627	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1628	# then
1629	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1630	# then
1631	# rm -rf user_interface.f90
1632	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1633	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1634	# printf "\n since a user-interface is found in file"
1635	# printf "\n \"$add_source_path/$dateiname\" \n"
1636	# sleep 3
1637	# else
1638	if [[ $found = false ]]
1639	then
1640	found=true
1641	printf "\n\n *** following user file(s) added to the"
1642	printf " files to be translated:\n "
1643	fi
1644	printf "$dateiname "
1645	if [[ $silent == false ]]
1646	then
1647	sleep 0.5
1648	fi
1649
1650	fi
1651	done
1652	[[ $found = true ]] && printf "\n"
1653	cd - > /dev/null
1654	fi
1655	fi
1656
1657
1658	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1659	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1660	if [[ $restart_run != true && -n $package_list ]]
1661	then
1662
1663	cd $source_path
1664
1665	for package in $package_list
1666	do
1667
1668	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1669
1670	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1671	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1672	# LIEFERT
1673	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1674
1675
1676	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1677	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1678	for source_list_name in $package_source_list
1679	do
1680	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1681	then
1682
1683	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1684	ending=`echo $source_list_name \| cut -f2 -d.`
1685	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1686	then
1687	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1688	source_list="$source_list $source_list_name"
1689	fi
1690	fi
1691	done
1692	done
1693
1694	cd - > /dev/null
1695	fi
1696
1697
1698	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1699	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1700	# if [[ "$restart_run" != true ]]
1701	# then
1702	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1703	# if [[ ! -f $makefile ]]
1704	# then
1705	# printf "\n +++ file \"$makefile\" does not exist"
1706	# locat=make; exit
1707	# else
1708	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1709	# fi
1710	# fi
1711
1712	fi # do_compile=true
1713
1714
1715	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1716	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1717	if [[ $do_compile = true ]]
1718	then
1719
1720	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1721	# ZUSAMMENSETZEN
1722	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1723	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1724	then
1725	cpp_options="${cpp_options},-D__ibm=__ibm"
1726	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1727	then
1728	cpp_options="$cpp_options -D__nec"
1729	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1730	then
1731	cpp_options="$cpp_options -D__lc"
1732	else
1733	cpp_options="$cpp_options -D__$localhost"
1734	fi
1735
1736	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1737	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1738	then
1739	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1740	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1741	else
1742	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1743	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1744	fi
1745
1746	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1747	if [[ -n $package_list ]]
1748	then
1749	for package in $package_list
1750	do
1751	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1752	then
1753	if [[ $package != "dvrp_graphics+1PE" ]]
1754	then
1755	cpp_options="${cpp_options},-D__$package=__$package"
1756	else
1757	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1758	export use_seperate_pe_for_dvrp_output=true
1759	fi
1760	else
1761	if [[ $package != "dvrp_graphics+1PE" ]]
1762	then
1763	cpp_options="$cpp_options -D__$package"
1764	else
1765	cpp_options="$cpp_options -D__dvrp_graphics"
1766	export use_seperate_pe_for_dvrp_output=true
1767	fi
1768	fi
1769	done
1770	fi
1771
1772	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1773	if [[ -n $cpp_opts ]]
1774	then
1775	for popts in $cpp_opts
1776	do
1777	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1778	then
1779	cpp_options="${cpp_options},-D__$popts=__$popts"
1780	else
1781	cpp_options="$cpp_options -D__$popts"
1782	fi
1783	done
1784	fi
1785
1786	else
1787
1788
1789	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1790	if [[ $do_remote = false ]]
1791	then
1792	if [[ ! -f $executable ]]
1793	then
1794	printf "\n +++ executable file: $executable"
1795	printf "\n does not exist"
1796	locat=executable; exit
1797	fi
1798	fi
1799	fi
1800
1801
1802	# JOBMODUS FESTSTELLEN
1803	if [[ "$ENVIRONMENT" = BATCH ]]
1804	then
1805	jobmo=BATCH
1806	else
1807	jobmo=INTERACTIVE
1808	fi
1809
1810
1811	# no interactive runs on lctit
1812	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1813	then
1814	printf "\n +++ no interactive runs allowed on host \"$host\" "
1815	printf "\n please submit batch job using mrun option \"-b\" \n"
1816	locat=normal; exit
1817	fi
1818
1819
1820	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1821	# DURCH BENUTZER ANDERWEITIG VEREINBART
1822	if [[ "$compiler_name" = "" ]]
1823	then
1824
1825	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1826	locat=compiler_name; exit
1827
1828	fi
1829
1830
1831	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1832	[[ $localhost = necriam ]] && compiler_name=mpif90
1833
1834
1835
1836	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1837	kennung=$RANDOM
1838	if [[ "$tmp_user_catalog" = "" ]]
1839	then
1840	if [[ $localhost = ibmh ]]
1841	then
1842	tmp_user_catalog=$SCRATCH
1843	elif [[ $localhost = nech ]]
1844	then
1845	tmp_user_catalog=$WRKSHR
1846	else
1847	tmp_user_catalog=/tmp
1848	fi
1849	fi
1850	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1851
1852
1853	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1854	# BESTIMMEN
1855	if [[ "$tmp_data_catalog" = "" ]]
1856	then
1857	if [[ $localhost = nech ]]
1858	then
1859	tmp_data_catalog=$WRKSHR/mrun_restart_data
1860	else
1861	tmp_data_catalog=/tmp/mrun_restart_data
1862	fi
1863	fi
1864
1865
1866	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1867	# ERSETZEN
1868	if [[ $do_remote = false && $do_compile = true ]]
1869	then
1870	eval fopts=\"$fopts\"
1871	eval lopts=\"$lopts\"
1872	fi
1873
1874
1875
1876	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1877	fopts="$fopts $netcdf_inc $dvr_inc"
1878	lopts="$lopts $netcdf_lib $dvr_lib"
1879	ROPTS="$ropts"
1880	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1881	# then
1882	XOPT="-X $numprocs"
1883	# fi
1884
1885
1886
1887	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1888	# GRAMM BENOETIGT
1889	done=false
1890	while [[ $done = false ]]
1891	do
1892	cputime=$cpumax
1893	if (( $cputime == 0 ))
1894	then
1895	if [[ $do_batch = true ]]
1896	then
1897	printf "\n +++ cpu-time is undefined"
1898	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1899	printf "\n >>> "
1900	read cputime 1>/dev/null 2>&1
1901	else
1902	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1903	fi
1904	else
1905	done=true
1906	fi
1907	cpumax=$cputime
1908	done
1909
1910	(( minuten = cputime / 60 ))
1911	(( sekunden = cputime - minuten * 60 ))
1912
1913
1914	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1915	if [[ $do_batch = true ]]
1916	then
1917	done=false
1918	while [[ $done = false ]]
1919	do
1920	if (( memory == 0 ))
1921	then
1922	printf "\n +++ memory demand is undefined"
1923	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1924	printf "\n >>> "
1925	read memory 1>/dev/null 2>&1
1926	else
1927	done=true
1928	fi
1929	done
1930	fi
1931
1932
1933	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1934	if [[ $do_remote = true && -z $remote_username ]]
1935	then
1936	while [[ -z $remote_username ]]
1937	do
1938	printf "\n +++ username on remote host \"$host\" is undefined"
1939	printf "\n >>> Please type username:"
1940	printf "\n >>> "
1941	read remote_username
1942	done
1943	mc="$mc -u$remote_username"
1944	fi
1945
1946	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1947	if [[ "$login_init_cmd" != "" ]]
1948	then
1949	export init_cmds="${login_init_cmd};"
1950	fi
1951
1952
1953	# set module load command and export for subjob
1954	if [[ "$modules" != "" ]]
1955	then
1956	if [[ $host = lctit ]]
1957	then
1958	export module_calls=". $modules"
1959	else
1960	export module_calls="module load ${modules};"
1961	fi
1962	fi
1963
1964	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1965	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1966	then
1967	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1968	then
1969	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1970	fi
1971	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1972	# then
1973	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1974	# echo "*** module_calls = $module_calls"
1975	# fi
1976	fi
1977
1978
1979	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1980	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1981	then
1982	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1983	then
1984	mpilib=mpt
1985	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1986	then
1987	mpilib=mvapich
1988	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1989	then
1990	mpilib=impi
1991	fi
1992	fi
1993
1994
1995
1996	###########################################################################
1997	# HEADER-AUSGABE
1998	###########################################################################
1999
2000
2001	calltime=$(date)
2002	printf "\n"
2003	# [[ $silent = false ]] && clear
2004	printf "#------------------------------------------------------------------------# \n"
2005	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2006	printf "\| \| \n"
2007	spalte1="called on:"; spalte2=$localhost_realname
2008	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2009	if [[ $local_compile = false ]]
2010	then
2011	if [[ $do_remote = true ]]
2012	then
2013	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2014	else
2015	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2016	fi
2017	else
2018	spalte1="compiling test only!"; spalte2=""
2019	fi
2020	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2021	if [[ -n $numprocs ]]
2022	then
2023	spalte1="number of PEs:"; spalte2=$numprocs
2024	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2025	fi
2026	if [[ -n $tasks_per_node ]]
2027	then
2028	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2029	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2030	fi
2031	if [[ $maximum_parallel_io_streams != $numprocs ]]
2032	then
2033	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2034	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2035	fi
2036	if [[ $use_openmp = true ]]
2037	then
2038	spalte1="threads per task:"; spalte2="$threads_per_task"
2039	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2040	fi
2041	printf "\| \| \n"
2042	if [[ $do_compile = true ]]
2043	then
2044	if [[ "$mopts" != "" ]]
2045	then
2046	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2047	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2048	zeile=$(echo "$mopts" \| cut -c46-)
2049	while [[ "$zeile" != "" ]]
2050	do
2051	spalte1=""
2052	spalte2=$(echo "$zeile" \| cut -c-45)
2053	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2054	zeile=$(echo "$zeile" \| cut -c46-)
2055	done
2056	fi
2057
2058	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2059	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2060	zeile=$(echo "$cpp_options" \| cut -c46-)
2061	while [[ "$zeile" != "" ]]
2062	do
2063	spalte1=""
2064	spalte2=$(echo "$zeile" \| cut -c-45)
2065	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2066	zeile=$(echo "$zeile" \| cut -c46-)
2067	done
2068
2069	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2070	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2071	zeile=$(echo "$fopts" \| cut -c46-)
2072	while [[ "$zeile" != "" ]]
2073	do
2074	spalte1=""
2075	spalte2=$(echo "$zeile" \| cut -c-45)
2076	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2077	zeile=$(echo "$zeile" \| cut -c46-)
2078	done
2079
2080	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2081	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2082	zeile=$(echo "$lopts" \| cut -c46-)
2083	while [[ "$zeile" != "" ]]
2084	do
2085	spalte1=""
2086	spalte2=$(echo "$zeile" \| cut -c-45)
2087	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2088	zeile=$(echo "$zeile" \| cut -c46-)
2089	done
2090
2091	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2092	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2093	zeile=$(echo "$modules" \| cut -c46-)
2094	while [[ "$zeile" != "" ]]
2095	do
2096	spalte1=""
2097	spalte2=$(echo "$zeile" \| cut -c-45)
2098	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2099	zeile=$(echo "$zeile" \| cut -c46-)
2100	done
2101
2102	spalte1="main program:"; spalte2=$mainprog
2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2104	else
2105	spalte1=executable:; spalte2=$executable
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	fi
2108	printf "\| \| \n"
2109	spalte1="base name of files:"; spalte2=$fname
2110	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2111	if [[ $fname != $afname ]]
2112	then
2113	spalte1="base name of input files:"; spalte2=$afname
2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2115	fi
2116	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2117	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2118	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2119	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2120
2121	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2122	then
2123	spalte1="memory demand / PE":; spalte2="$memory MB"
2124	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2125	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2126	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2127	fi
2128
2129	if [[ $do_compile = true ]]
2130	then
2131	printf "\| \| \n"
2132	printf "\| Files to be compiled: \| \n"
2133	zeile=$source_list
2134	while [[ "$zeile" != "" ]]
2135	do
2136	linestart=$(echo $zeile \| cut -c-70)
2137	printf "\| %-70s \| \n" "$linestart"
2138	zeile=$(echo "$zeile" \| cut -c71-)
2139	done
2140	fi
2141	printf "#------------------------------------------------------------------------#"
2142
2143
2144
2145	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2146	if [[ $do_trace = true ]]
2147	then
2148	(( i = 0 ))
2149	while (( i < iin ))
2150	do
2151	(( i = i + 1 ))
2152	if (( i == 1 ))
2153	then
2154	printf "\n\n >>> INPUT-file assignments:\n"
2155	fi
2156	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2157	done
2158	(( i = 0 ))
2159	while (( i < iout ))
2160	do
2161	(( i = i + 1 ))
2162	if (( i == 1 ))
2163	then
2164	printf "\n\n >>> OUTPUT-file assignments:\n"
2165	fi
2166	printf "\n ${localout[$i]} : ${pathout[$i]}"
2167	done
2168	(( i = 0 ))
2169	while (( i < iic ))
2170	do
2171	(( i = i + 1 ))
2172	if (( i == 1 ))
2173	then
2174	printf "\n\n >>> INPUT-commands:\n"
2175	fi
2176	printf "\n ${in_command[$i]}"
2177	done
2178	(( i = 0 ))
2179	while (( i < ioc ))
2180	do
2181	(( i = i + 1 ))
2182	if (( i == 1 ))
2183	then
2184	printf "\n\n >>> OUTPUT-commands:\n"
2185	fi
2186	printf "\n ${out_command[$i]}"
2187	done
2188	fi
2189
2190
2191	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2192	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2193	then
2194	antwort=dummy
2195	printf "\n\n"
2196	printf " >>> everything o.k. (y/n) ? "
2197	while read antwort
2198	do
2199	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2200	then
2201	printf " >>> everything o.k. (y/n) ? "
2202	else
2203	break
2204	fi
2205	done
2206	if [[ $antwort = n \|\| $antwort = N ]]
2207	then
2208	locat=user_abort; (( iec = 0 )); exit
2209	fi
2210	if [[ $do_batch = true ]]
2211	then
2212	printf " >>> batch-job will be created and submitted"
2213	else
2214	if [[ $local_compile = false ]]
2215	then
2216	printf " >>> MRUN will now continue to execute on this machine"
2217	else
2218	printf " >>> a test compilation will now be carried out on this machine"
2219	fi
2220	fi
2221	fi
2222
2223
2224	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2225	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2226	check_depository="${working_directory}/trunk/UTIL"
2227	check_sources="${working_directory}/tmp_check_namelist_files"
2228	skip_check=false
2229
2230	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2231	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2232	then
2233	skip_check=true
2234	reason="run on remote host or parameter file check has not been compiled."
2235	fi
2236	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2237	then
2238	skip_check=true
2239	reason="parameter file check has not been compiled."
2240	fi
2241
2242	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2243	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2244	then
2245	skip_check=true
2246	reason="serial run."
2247	fi
2248
2249	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2250	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2251	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2252	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2253	if [[ $check_namelist_files == false ]]
2254	then
2255	skip_check=true
2256	reason="-z option set."
2257	fi
2258
2259	if [[ $fromhost != $localhost ]]
2260	then
2261	skip_check=true
2262	reason="submitting host is local host."
2263	fi
2264
2265	if [[ $run_coupled_model == true ]]
2266	then
2267	skip_check=true
2268	reason="coupled run."
2269	fi
2270
2271	if [[ $restart_run == true ]]
2272	then
2273	skip_check=true
2274	reason="restart run."
2275	fi
2276
2277	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2278	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2279	last_char=`echo $filename_input \| cut -c $last_char`
2280	if [[ "$last_char" == "f" ]]
2281	then
2282	skip_check=true
2283	reason="restart run."
2284	fi
2285
2286	if [[ $skip_check == false ]]
2287	then
2288	tmp_check=${working_directory}/tmp_check
2289
2290	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2291	# NOT NECESSARILY REQUIRED
2292	line=""
2293	found=false
2294	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2295	while read line1
2296	do
2297	line="$line1"
2298	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2299	then
2300	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2301	found=true
2302	fi
2303	done < $tmp_check
2304
2305	if [[ $found = false ]]
2306	then
2307	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2308	fi
2309
2310	rm -rf ${working_directory}/tmp_check
2311
2312	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2313	for item in $input_list
2314	do
2315	if [[ "$item" == "restart" ]]
2316	then
2317	check_restart=1
2318	else
2319	check_restart=0
2320	fi
2321	done
2322
2323	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2324	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2325	then
2326	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2327	locat=check_namelist; exit
2328	fi
2329
2330	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2331	if [[ $check_restart == 1 ]]
2332	then
2333
2334	filenamef="${filename_input}f"
2335	if [[ ! -f $filenamef ]]
2336	then
2337	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2338	check_restart=0
2339	answer=dummy
2340	printf "\n\n"
2341
2342	if [[ $silent == false ]]
2343	then
2344	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2345	do
2346	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2347	read answer
2348	done
2349	if [[ $answer = a \|\| $answer = A ]]
2350	then
2351	printf "\n +++ Aborting...."
2352	locat=normal; exit
2353	fi
2354	fi
2355	else
2356	check_restart=1
2357	fi
2358	fi
2359
2360	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2361	mkdir $check_sources
2362	cd $check_sources
2363
2364
2365	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2366	if [[ -d $add_source_path ]]
2367	then
2368	printf "\n\n *** copying files from $check_depository"
2369	cp $check_depository/check_namelist_files.tar ./
2370
2371	printf "\n\n *** untar of makefile and source files in $check_sources"
2372	tar -xf check_namelist_files.tar > /dev/null 2>&1
2373
2374	printf "\n\n *** adding user code."
2375	cp $add_source_path/* ./
2376	touch check_namelist_files.f90
2377
2378	# GET COMPILER OPTIONS AND PERFORM MAKE
2379	printf "\n\n *** compiling code if necessary...\n"
2380
2381	# workaround for batch jobs on local machine (lcxe6)
2382	if [[ $do_batch == true && $do_remote == false ]]
2383	then
2384	eval $init_cmds
2385	fi
2386
2387	# GET CHECK OPTIONS
2388	line=""
2389	found=false
2390
2391	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2392
2393	while read line1
2394	do
2395
2396	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2397	then
2398	line="$line1"
2399	fi
2400
2401	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2402	then
2403	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2404	line="$line "
2405	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2406	found=true
2407	fi
2408
2409	done < $tmp_check
2410	copts_check="$copts_check -D__check -D__parallel"
2411
2412	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2413
2414	# GET MAKE OUTPUT
2415	if [[ $? != 0 ]]
2416	then
2417	printf "\n +++ error during make."
2418	answer=dummy
2419	printf "\n\n"
2420	if [[ $silent == false ]]
2421	then
2422	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2423	do
2424	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2425	read answer
2426	done
2427	if [[ $answer = a \|\| $answer = A ]]
2428	then
2429	printf "\n +++ Aborting..."
2430	rm -rf $check_sources
2431	locat=normal; exit
2432	else
2433	skip_check=true
2434	fi
2435	else
2436	skip_check=true
2437	fi
2438	fi
2439	else
2440	cp $PALM_BIN/check_namelist_files.x ./
2441	fi
2442
2443	cp $filename_input ./PARIN
2444	if [[ $check_restart == 1 ]]
2445	then
2446	cp $filenamef ./PARINF
2447	fi
2448
2449	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2450	then
2451	printf "\n *** adding topography data"
2452	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2453
2454	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2455	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2456	# WHICH REQUIRE SUFFICIENT MEMORY
2457	ulimit -s unlimited
2458	fi
2459
2460	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2461	cat > ENVPAR << %%END%%
2462	&envpar run_identifier = '$fname', host = '$host',
2463	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2464	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2465	maximum_cpu_time_allowed = ${cpumax}.,
2466	revision = '$global_revision',
2467	local_dvrserver_running = $local_dvrserver_running /
2468
2469	%%END%%
2470
2471	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2472	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2473	then
2474	printf "\n +++ WARNING: check_namelist_files.x not found."
2475	answer=dummy
2476	printf "\n\n"
2477
2478	if [[ $silent == false ]]
2479	then
2480	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2481	do
2482	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2483	read answer
2484	done
2485	if [[ $answer = a \|\| $answer = A ]]
2486	then
2487	printf "\n +++ Aborting..."
2488	rm -rf $check_sources
2489	locat=normal; exit
2490	else
2491	printf "\n *** skipping parameter file check."
2492	fi
2493	fi
2494
2495	elif [[ $skip_check == false ]]
2496	then
2497	# STARTING THE PARAMETER FILE CHECK
2498	printf "\n\n *** starting parameter file check..."
2499
2500	# CHECKING THE P3D FILE
2501	printf "\n\n (1) checking $filename_input"
2502	echo "$numprocs 0 0" > VARIN
2503	errors=`./check_namelist_files.x < VARIN 2>&1`
2504
2505	check_error=false
2506	if [[ "$errors" == "" ]]
2507	then
2508	printf " --> o.k."
2509	else
2510	printf " --> failed."
2511	check_error=true
2512	printf "\n\n $errors"
2513	fi
2514
2515	# CHECKING THE PD3F FILE IF NECESSARY
2516	if [[ $check_restart == 1 && $check_error == false ]]
2517	then
2518	printf "\n\n (2) checking $filenamef"
2519
2520	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2521	# IN &INIPAR LIST
2522	found=false
2523	cat PARINF \| while read line
2524	do
2525	line=$(echo $line\|sed 's/ //g')
2526	if [[ $line == "&inipar" ]]
2527	then
2528	start_search=true
2529	fi
2530
2531	if [[ $start_search == true ]]
2532	then
2533	if [[ $line == "initializing_actions='read_restart_data'" ]]
2534	then
2535	found=true
2536	break
2537	fi
2538	fi
2539
2540	if [[ $line == "/" ]]
2541	then
2542	start_search=false
2543	fi
2544
2545	done
2546
2547	if [[ $found = false ]]
2548	then
2549	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2550	printf "\n in &inipar list in $fname$p3df_suffix."
2551	rm -rf $check_sources
2552	locat=check_namelist; exit
2553	fi
2554
2555	# READ max_user_pr FROM FILES
2556	if [[ -f parin_for_check ]]
2557	then
2558	read max_pr_user < parin_for_check
2559	else
2560	max_user_pr=0
2561	fi
2562
2563	echo "$numprocs 1 $max_pr_user" > VARIN
2564	errors=`./check_namelist_files.x < VARIN 2>&1`
2565
2566	if [[ "$errors" == "" ]]
2567	then
2568	printf " --> o.k."
2569	else
2570	printf " --> failed."
2571	check_error=true
2572	printf "\n\n $errors"
2573	fi
2574	fi
2575
2576	# REPORT ERRORS AND CONTINUE/EXIT
2577	if [[ $check_error == true ]]
2578	then
2579	printf "\n +++ errors found in the parameter file!\n"
2580	answer=dummy
2581	printf "\n\n"
2582
2583	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2584	do
2585	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2586	read answer
2587	done
2588
2589	if [[ $answer = a \|\| $answer = A ]]
2590	then
2591	printf "\n +++ Aborting..."
2592	rm -rf $check_sources
2593	locat=normal; exit
2594	fi
2595	else
2596	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2597	fi
2598	rm -rf $check_sources
2599	fi
2600	else
2601	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2602	fi
2603
2604	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2605	rm -rf $check_sources
2606	cd $working_directory
2607
2608
2609	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2610	# CHENDE AKTIONEN DURCHGEFUEHRT
2611	if [[ $do_batch = false ]]
2612	then
2613
2614
2615	# TEMPORAEREN KATALOG ERZEUGEN
2616	mkdir -p $TEMPDIR
2617	chmod go+rx $TEMPDIR
2618	tmpcreate=true
2619
2620	# set striping on lustre file system
2621	# if [[ $localhost = lcsgih ]]
2622	# then
2623	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2624	# lfs getstripe $TEMPDIR
2625	# fi
2626
2627
2628	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2629	# TEMPORAERES VERZEICHNIS KOPIEREN
2630	if [[ $do_compile = true ]]
2631	then
2632
2633	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2634	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2635	if [[ $localhost = nech ]]
2636	then
2637	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2638	if mkdir -p $TEMPDIR_COMPILE
2639	then
2640	printf "\n *** \"$TEMPDIR_COMPILE\" "
2641	printf "\n is generated as temporary directory for cross compiling\n"
2642	else
2643	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2644	printf "\n needed for cross compilation failed"
2645	locat=compile
2646	exit
2647	fi
2648	else
2649	TEMPDIR_COMPILE=$TEMPDIR
2650	fi
2651
2652
2653	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2654	line=""
2655	grep "%depository_path" $config_file > tmp_mrun
2656	while read line
2657	do
2658	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2659	then
2660	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2661	then
2662	global_depository_path=`echo $line \| cut -d" " -s -f2`
2663	fi
2664	fi
2665	done < tmp_mrun
2666
2667	line=""
2668	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2669	while read line
2670	do
2671	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2672	then
2673	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2674	then
2675	local_depository_path=`echo $line \| cut -d" " -s -f2`
2676	fi
2677	fi
2678	done < tmp_mrun
2679
2680	if [[ "$local_depository_path" = "" ]]
2681	then
2682	if [[ "$global_depository_path" != "" ]]
2683	then
2684	local_depository_path=$global_depository_path
2685	else
2686	printf "\n\n +++ no depository path found in configuration file"
2687	printf "\n for local host \"$localhost\" "
2688	printf "\n please set \"\%depository_path\" in configuration file\n"
2689	locat=config_file; exit
2690	fi
2691	fi
2692	eval local_depository_path=$local_depository_path
2693	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2694	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2695
2696
2697	basename=`echo $mainprog \| cut -f1 -d"."`
2698	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2699	if [[ ! -f $make_depository ]]
2700	then
2701	printf "\n"
2702	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2703	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2704	else
2705	cp $make_depository $TEMPDIR_COMPILE
2706	cd $TEMPDIR_COMPILE
2707	tar -xf $make_depository > /dev/null 2>&1
2708	cd - > /dev/null
2709	fi
2710
2711	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2712
2713	else
2714
2715	cp $executable ${TEMPDIR}/a.out
2716
2717	fi
2718
2719
2720	# WECHSEL IN TEMPORAEREN KATALOG
2721	cd $TEMPDIR
2722	printf "\n *** changed to temporary directory: $TEMPDIR"
2723
2724
2725	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2726	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2727	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2728	# ERMITTELN
2729	(( i = 0 ))
2730	while (( i < iout ))
2731	do
2732	(( i = i + 1 ))
2733	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2734	then
2735	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2736	else
2737	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2738	fi
2739	done
2740
2741
2742	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2743	if [[ $do_compile = true ]]
2744	then
2745
2746
2747	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2748	printf "\n\n\n *** compilation starts \n$striche\n"
2749	printf " *** compilation with make using following options:\n"
2750	printf " make depository: $make_depository"
2751	if [[ "$mopts" != "" ]]
2752	then
2753	printf " make options: $mopts\n"
2754	fi
2755	printf " compilername: $compiler_name\n"
2756	printf " compiler options: $fopts\n"
2757	printf " preprocessor directives: $cpp_options \n"
2758	printf " linker options: $lopts \n"
2759	if [[ "$modules" != "" ]]
2760	then
2761	printf " modules to be load: $modules \n"
2762	fi
2763	printf " source code files: $source_list \n"
2764
2765	if [[ $localhost = nech ]]
2766	then
2767	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2768	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2769	cp $TEMPDIR_COMPILE/a.out .
2770	[[ $? != 0 ]] && compile_error=true
2771	rm -rf $TEMPDIR_COMPILE
2772	elif [[ $localhost = ibmh ]]
2773	then
2774	printf " compiler is called via ssh on \"plogin1\" \n"
2775	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2776	[[ ! -f a.out ]] && compile_error=true
2777	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2778	elif [[ $localhost = lcsgib ]]
2779	then
2780	printf " compiler is called via ssh on \"bicegate0\" \n"
2781	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2782	[[ ! -f a.out ]] && compile_error=true
2783	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2784	elif [[ $localhost = lcsgih ]]
2785	then
2786	printf " compiler is called via ssh on \"hicegate0\" \n"
2787	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2788	[[ ! -f a.out ]] && compile_error=true
2789	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2790	elif [[ $localhost = lcflow ]]
2791	then
2792	printf " compiler is called via ssh on \"flow\" \n"
2793	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2794	[[ ! -f a.out ]] && compile_error=true
2795	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2796	else
2797	[[ "$init_cmds" != "" ]] && eval $init_cmds
2798	[[ "$module_calls" != "" ]] && eval $module_calls
2799	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2800
2801	fi
2802
2803	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2804	then
2805	printf "\n +++ error occured while compiling or linking"
2806	locat=compile
2807
2808	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2809	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2810	# then
2811	exit
2812	# else
2813	# locat=normal
2814	# fi
2815	else
2816	printf "$striche\n *** compilation finished \n"
2817	fi
2818	fi
2819
2820
2821	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2822	if [[ $local_compile = true ]]
2823	then
2824	cd $HOME
2825	rm -rf $TEMPDIR
2826	locat=local_compile; exit
2827	fi
2828
2829
2830	# BEREITSTELLEN DER INPUT-DATEIEN
2831	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2832	(( i = 0 ))
2833	while (( i < iin ))
2834	do
2835	(( i = i + 1 ))
2836	if (( i == 1 ))
2837	then
2838	printf "\n\n *** providing INPUT-files:\n$striche"
2839	fi
2840
2841
2842	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2843	if [[ "${transin[$i]}" = unavailable ]]
2844	then
2845	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2846	then
2847	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2848	printf "\n is not available!"
2849	else
2850	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2851	printf "\n is not available!"
2852	fi
2853	continue
2854	fi
2855
2856	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2857	files_for_pes=false; datentyp=file
2858	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2859	then
2860	files_for_pes=true; datentyp=directory
2861	actionin[$i]=""
2862	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2863	then
2864	actionin[$i]=""
2865	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2866	then
2867	files_for_pes=true; datentyp=directory
2868	actionin[$i]="ar"
2869	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2870	then
2871	actionin[$i]="ar"
2872	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2873	then
2874	files_for_pes=true; datentyp=directory
2875	actionin[$i]="fl"
2876	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2877	then
2878	actionin[$i]="fl"
2879	fi
2880
2881	if [[ $files_for_pes = true ]]
2882	then
2883	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2884	else
2885	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2886	fi
2887
2888	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2889	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2890	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2891	# SERVER ZU HOLEN
2892	if [[ "${actionin[$i]}" = fl ]]
2893	then
2894	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2895	if [[ $files_for_pes = false ]]
2896	then
2897	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2898	then
2899	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2900	got_tmp[$i]=true
2901	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2902	then
2903	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2904	printf "\n *** trying to use backup copy in \"$WORK\" "
2905	cp $WORK/${frelin[$i]} ${localin[$i]}
2906	else
2907	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2908	printf "\n or \"$tmp_data_catalog\" does not exist!"
2909	printf "\n *** trying to get copy from archive"
2910	actionin[$i]=ar
2911	fi
2912	else
2913	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2914	then
2915	mkdir ${localin[$i]}
2916	cd $tmp_data_catalog/${frelin[$i]}
2917	for file in $(ls *)
2918	do
2919	ln $file $TEMPDIR/${localin[$i]}
2920	done
2921	cd $TEMPDIR
2922	got_tmp[$i]=true
2923	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2924	then
2925	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2926	printf "\n *** trying to use backup copy in \"$WORK\" "
2927	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2928	else
2929	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2930	printf "\n or \"$tmp_data_catalog\" does not exist!"
2931	printf "\n *** trying to get copy from archive"
2932	actionin[$i]=ar
2933	fi
2934	fi
2935	fi
2936
2937
2938	# DATEI LIEGT AUF ARCHIV-SERVER
2939	if [[ "${actionin[$i]}" = ar ]]
2940	then
2941
2942	if [[ $files_for_pes = false ]]
2943	then
2944	printf "\n file will be restored from archive-system ($archive_system)!"
2945	else
2946	printf "\n directory will be restored from archive-system ($archive_system)!"
2947	fi
2948
2949	file_restored=false
2950
2951	if [[ $archive_system = asterix ]]
2952	then
2953	do_stagein=true
2954	(( stagein_anz = 0 ))
2955	while [[ $do_stagein = true ]]
2956	do
2957	if [[ $files_for_pes = false ]]
2958	then
2959	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2960	else
2961	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2962	fi
2963	cat STAGEIN_OUTPUT
2964	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2965	then
2966	file_restored=true
2967	do_stagein=false
2968	else
2969	(( stagein_anz = stagein_anz + 1 ))
2970	if (( stagein_anz == 10 ))
2971	then
2972	printf "\n +++ stagein stoped after 10 tries"
2973	locat=stage
2974	exit
2975	fi
2976	printf "\n +++ restoring from archive failed, trying again:"
2977	sleep 900
2978	fi
2979	done
2980	elif [[ $archive_system = DMF ]]
2981	then
2982	if [[ $files_for_pes = false ]]
2983	then
2984	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2985	locat=DMF
2986	exit
2987	else
2988	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2989	cp -r $ARCHIVE/${frelin[$i]} $PWD
2990	file_restored=true
2991	fi
2992	elif [[ $archive_system = tivoli ]]
2993	then
2994	if [[ $files_for_pes = false ]]
2995	then
2996	if [[ $localhost = lcsgih ]]
2997	then
2998	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2999	else
3000	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3001	fi
3002	else
3003	(( inode = 0 ))
3004	while (( inode < nodes ))
3005	do
3006	if [[ $localhost = lcsgih ]]
3007	then
3008	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3009	else
3010	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3011	fi
3012	(( inode = inode + 1 ))
3013	done
3014	fi
3015	file_restored=true
3016	elif [[ $archive_system = ut ]]
3017	then
3018	if [[ $files_for_pes = false ]]
3019	then
3020	cp $UT/${frelin[$i]} .
3021	else
3022	(( inode = 0 ))
3023	while (( inode < nodes ))
3024	do
3025	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3026	(( inode = inode + 1 ))
3027	done
3028	fi
3029	file_restored=true
3030	else
3031	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3032	locat=rearchive
3033	exit
3034	fi
3035
3036	if [[ $file_restored = true ]]
3037	then
3038
3039	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3040	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3041	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3042	if [[ $files_for_pes = false ]]
3043	then
3044	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3045	else
3046	mkdir $tmp_data_catalog/${frelin[$i]}
3047	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3048	fi
3049	got_tmp[$i]=true
3050
3051	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3052	mv ${frelin[$i]} ${localin[$i]}
3053
3054	fi
3055	fi
3056
3057
3058	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3059	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3060	then
3061
3062	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3063	then
3064
3065	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3066	printf "\n file will be provided for $numprocs processors"
3067	mkdir ${localin[$i]}
3068	ival=$numprocs
3069	(( ii = 0 ))
3070	while (( ii <= ival-1 ))
3071	do
3072	if (( ii < 10 ))
3073	then
3074	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3075	elif (( ii < 100 ))
3076	then
3077	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3078	elif (( ii < 1000 ))
3079	then
3080	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3081	else
3082	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3083	fi
3084	(( ii = ii + 1 ))
3085	done
3086
3087	else
3088
3089	if [[ $files_for_pes = true ]]
3090	then
3091
3092	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3093	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3094	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3095	# PER MOVE UMBENANNT WERDEN
3096	printf "\n providing $numprocs files for the respective processors"
3097	mkdir ${localin[$i]}
3098	if [[ $link_local_input = true ]]
3099	then
3100	printf " using ln -f\n"
3101	cd ${absnamein[$i]}
3102	for file in $(ls *)
3103	do
3104	ln -f $file ${localin[$i]}
3105	done
3106	cd $TEMPDIR
3107	fi
3108	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3109	if [[ ! -f "${localin[$i]}/_0000" ]]
3110	then
3111	if [[ $link_local_input = true ]]
3112	then
3113	printf " ln failed for .../_0000, using cp...\n"
3114	fi
3115	cp -r ${absnamein[$i]}/* ${localin[$i]}
3116	fi
3117
3118	else
3119	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3120	if [[ $link_local_input = true ]]
3121	then
3122	printf " using ln -f\n"
3123	ln -f ${absnamein[$i]} ${localin[$i]}
3124	fi
3125	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3126	if [[ ! -f "${localin[$i]}" ]]
3127	then
3128	if [[ $link_local_input = true ]]
3129	then
3130	printf " ln failed, using cp...\n"
3131	fi
3132	cp ${absnamein[$i]} ${localin[$i]}
3133	fi
3134	fi
3135	fi
3136	fi
3137
3138	done
3139	if (( i != 0 ))
3140	then
3141	printf "\n$striche\n *** all INPUT-files provided \n"
3142	fi
3143
3144
3145	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3146	(( i = 0 ))
3147	while (( i < iic ))
3148	do
3149	(( i = i + 1 ))
3150	if (( i == 1 ))
3151	then
3152	printf "\n\n *** execution of INPUT-commands:\n$striche"
3153	fi
3154	printf "\n >>> ${in_command[$i]}"
3155	eval ${in_command[$i]}
3156	if (( i == iic ))
3157	then
3158	printf "\n$striche\n"
3159	fi
3160	done
3161
3162
3163	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3164	cpurest=${cpumax}.
3165
3166
3167	# START DVR STREAMING SERVER
3168	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3169	then
3170	if [[ "$dvr_server" != "" ]]
3171	then
3172
3173	printf "\n\n *** preparing the dvr streaming server configuration file"
3174
3175	# Check, if a dvr server is already running
3176	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3177	if [[ "$running_dvrserver_id" != "" ]]
3178	then
3179
3180	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3181	printf "\n This server is used instead starting a new one!"
3182	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3183
3184	else
3185
3186	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3187	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3188	then
3189	cp ${PALM_BIN}/.dvrserver.config .
3190
3191	# Entering the BASEDIR, UID and GID into this file
3192	user_id=`id -u`
3193	group_id=`id -g`
3194	# & is needed as seperator, because TEMPDIR contains /
3195	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3196	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3197	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3198	mv .dvrserver.3 .dvrserver.config
3199	rm .dvrserver.1 .dvrserver.2
3200
3201	# Start dvr server in background, get his id and print on terminal
3202	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3203	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3204	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3205	local_dvrserver_running=.TRUE.
3206	else
3207	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3208	printf "\n \"$PALM_BIN\" "
3209	locat=dvr
3210	exit
3211	fi
3212
3213	fi
3214
3215	else
3216	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3217	fi
3218	fi
3219
3220
3221	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3222	# LESEN VON PALM)
3223	cat > ENVPAR << %%END%%
3224	&envpar run_identifier = '$fname', host = '$localhost',
3225	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3226	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3227	maximum_cpu_time_allowed = ${cpumax}.,
3228	revision = '$global_revision',
3229	local_dvrserver_running = $local_dvrserver_running /
3230
3231	%%END%%
3232
3233
3234	# PROGRAMMSTART
3235	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3236	PATH=$PATH:$TEMPDIR
3237
3238	# MPI debug option (argument checking, slows down execution due to increased latency)
3239	if [[ "$mpi_debug" = true ]]
3240	then
3241	export MPI_CHECK_ARGS=1
3242	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3243	fi
3244
3245	if [[ "$totalview" = true ]]
3246	then
3247	printf "\n *** totalview debugger will be used"
3248	tv_opt="-tv"
3249	else
3250	tv_opt=""
3251	fi
3252
3253	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3254	then
3255	if [[ "$ENVIRONMENT" = BATCH ]]
3256	then
3257	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3258	then
3259	printf "\n +++ debug is allowed in interactive mode only"
3260	locat=debug
3261	exit
3262	fi
3263	fi
3264	if [[ $localhost = ibmh ]]
3265	then
3266
3267	# SETUP THE IBM MPI ENVIRONMENT
3268	export MP_SHARED_MEMORY=yes
3269	export AIXTHREADS_SCOPE=S
3270	export OMP_NUM_THREADS=$threads_per_task
3271	export AUTHSTATE=files
3272	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3273
3274	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3275	export MP_ADAPTER_USE=shared
3276	export MP_CPU_USE=multiple
3277	export MP_TIMEOUT=1200
3278
3279	unset MP_TASK_AFFINITY
3280
3281	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3282	#(( ii = 1 ))
3283	#while (( ii <= $numprocs ))
3284	#do
3285	# echo $localhost_realname >> hostfile
3286	# (( ii = ii + 1 ))
3287	#done
3288	#export MP_HOSTFILE=hostfile
3289
3290	if [[ "$LOADLBATCH" = yes ]]
3291	then
3292	totalview poe a.out $ROPTS
3293	else
3294	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3295	export TVDSVRLAUNCHCMD=ssh
3296	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3297	fi
3298	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3299	then
3300	# CURRENTLY NO DEBUGGER ON LCSGI
3301	if [[ $run_coupled_model = true ]]
3302	then
3303	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3304	locat=debug
3305	exit
3306	else
3307	echo "no_coupling" > runfile_atmos
3308	fi
3309	(( ii = $numprocs / $threads_per_task ))
3310	export OMP_NUM_THREADS=$threads_per_task
3311	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3312	if [[ $threads_per_task != 1 ]]
3313	then
3314	printf "\n threads per task: $threads_per_task"
3315	fi
3316	printf "\n\n"
3317	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3318	then
3319	# export MPI_LAUNCH_TIMEOUT=360
3320	if [[ "$totalview" = true ]]
3321	then
3322	printf "\n running totalview debugger"
3323	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3324	else
3325	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3326	fi
3327	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3328	then
3329	# ulimit -s 300000 # A too large stack size causes problems
3330	# export MV2_NUM_PORTS=2
3331	# export MV2_CPU_MAPPING=0:1:2:3
3332	if [[ "$totalview" = true ]]
3333	then
3334	printf "\n running totalview debugger"
3335	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3336	else
3337	mpiexec ./a.out $ROPTS < runfile_atmos
3338	fi
3339	fi
3340	else
3341	printf "\n +++ no debug available on \"$localhost\" "
3342	printf "\n or not implemented in mrun so far"
3343	locat=debug
3344	exit
3345	fi
3346
3347	# end debug mode
3348	else
3349
3350	# normal execution
3351	if [[ -n $numprocs ]]
3352	then
3353	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3354	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3355	then
3356	# SETUP THE IBM MPI ENVIRONMENT
3357	if [[ $host != ibmh && $host != ibmkisti ]]
3358	then
3359	export MP_SHARED_MEMORY=yes
3360	export AIXTHREAD_SCOPE=S
3361	export OMP_NUM_THREADS=$threads_per_task
3362	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3363	export AUTHSTATE=files
3364	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3365	# export MP_PRINTENV=yes
3366
3367	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3368	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3369	export MP_WAIT_MODE=poll
3370	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3371	fi
3372
3373	if [[ $host = ibmkisti ]]
3374	then
3375	export LANG=en_US
3376	export MP_SHARED_MEMORY=yes
3377	if [[ $threads_per_task = 1 ]]
3378	then
3379	export MP_SINGLE_THREAD=yes
3380	export MEMORY_AFFINITY=MCM
3381	else
3382	export OMP_NUM_THREADS=$threads_per_task
3383	fi
3384	fi
3385
3386	if [[ "$LOADLBATCH" = yes ]]
3387	then
3388	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3389	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3390	then
3391	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3392	else
3393	if [[ $run_coupled_model = false ]]
3394	then
3395	if [[ "$ocean_file_appendix" = true ]]
3396	then
3397	echo "precursor_ocean" > runfile_atmos
3398	else
3399	echo "precursor_atmos" > runfile_atmos
3400	fi
3401	else
3402	(( iia = $numprocs_atmos / $threads_per_task ))
3403	(( iio = $numprocs_ocean / $threads_per_task ))
3404	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3405	printf "\n using $coupled_mode coupling"
3406	printf "\n\n"
3407	echo "coupled_run $iia $iio" > runfile_atmos
3408	fi
3409	poe ./a.out $ROPTS < runfile_atmos
3410	fi
3411	else
3412	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3413	then
3414	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3415	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3416	then
3417	if [[ -f $hostfile ]]
3418	then
3419	cp $hostfile hostfile
3420	else
3421	(( ii = 1 ))
3422	while (( ii <= $numprocs ))
3423	do
3424	echo $localhost_realname >> hostfile
3425	(( ii = ii + 1 ))
3426	done
3427	fi
3428	export MP_HOSTFILE=hostfile
3429	if [[ $run_coupled_model = false ]]
3430	then
3431	if [[ "$ocean_file_appendix" = true ]]
3432	then
3433	echo "precursor_ocean" > runfile_atmos
3434	else
3435	echo "precursor_atmos" > runfile_atmos
3436	fi
3437	else
3438	(( iia = $numprocs_atmos / $threads_per_task ))
3439	(( iio = $numprocs_ocean / $threads_per_task ))
3440	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3441	printf "\n using $coupled_mode coupling"
3442	printf "\n\n"
3443	echo "coupled_run $iia $iio" > runfile_atmos
3444	fi
3445	if [[ $localhost = ibmy ]]
3446	then
3447	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3448	else
3449	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3450	fi
3451
3452	else
3453	if [[ "$host_file" = "" ]]
3454	then
3455	printf "\n +++ no hostfile given in configuration file"
3456	locat=config_file
3457	exit
3458	else
3459	eval host_file=$host_file
3460	fi
3461	export MP_HOSTFILE=$host_file
3462	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3463	fi
3464	fi
3465	elif [[ $host = nech \|\| $host = necriam ]]
3466	then
3467	(( ii = nodes ))
3468	if [[ $ii = 1 ]]
3469	then
3470	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3471	export MPIPROGINF=YES
3472	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3473	echo "*** execution on single node with mpirun"
3474	mpirun -np $numprocs ./a.out $ROPTS
3475	else
3476	(( i = 0 ))
3477	while (( i < ii ))
3478	do
3479	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3480	(( i = i + 1 ))
3481	done
3482
3483	echo "#!/bin/sh" > mpi_exec_shell
3484	echo " " >> mpi_exec_shell
3485	echo "set -u" >> mpi_exec_shell
3486	echo "F_ERRCNT=0" >> mpi_exec_shell
3487	echo "MPIPROGINV=YES" >> mpi_exec_shell
3488	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3489	echo "cpurest=$cpurest" >> mpi_exec_shell
3490	echo "fname=$fname" >> mpi_exec_shell
3491	echo "localhost=$localhost" >> mpi_exec_shell
3492	echo "return_addres=$return_addres" >> mpi_exec_shell
3493	echo "return_username=$return_username" >> mpi_exec_shell
3494	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3495	echo "write_binary=$write_binary" >> mpi_exec_shell
3496	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3497	echo " " >> mpi_exec_shell
3498	echo "export F_ERRCNT" >> mpi_exec_shell
3499	echo "export MPIPROGINV" >> mpi_exec_shell
3500	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3501	echo "export cpurest" >> mpi_exec_shell
3502	echo "export fname" >> mpi_exec_shell
3503	echo "export localhost" >> mpi_exec_shell
3504	echo "export return_addres" >> mpi_exec_shell
3505	echo "export return_username" >> mpi_exec_shell
3506	echo "export tasks_per_node" >> mpi_exec_shell
3507	echo "export write_binary" >> mpi_exec_shell
3508	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3509	echo " " >> mpi_exec_shell
3510	echo "exec ./a.out" >> mpi_exec_shell
3511
3512	chmod u+x mpi_exec_shell
3513	export MPIPROGINF=YES
3514	mpirun -f multinode_config &
3515	wait
3516
3517	fi
3518	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3519	then
3520
3521	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3522	# DOES NOT EXIST
3523	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3524	then
3525	if [[ -f $hostfile ]]
3526	then
3527	cp $hostfile hostfile
3528	(( ii = $numprocs / $threads_per_task ))
3529	else
3530	(( ii = 1 ))
3531	while (( ii <= $numprocs / $threads_per_task ))
3532	do
3533	echo $localhost_realname >> hostfile
3534	(( ii = ii + 1 ))
3535	done
3536	fi
3537	eval zeile=\"`head -n $ii hostfile`\"
3538	printf "\n *** running on: $zeile"
3539	fi
3540
3541	(( ii = $numprocs / $threads_per_task ))
3542	export OMP_NUM_THREADS=$threads_per_task
3543	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3544	if [[ $threads_per_task != 1 ]]
3545	then
3546	# increase stack size to unlimited, because large runs
3547	# may abort otherwise
3548	ulimit -Ss unlimited
3549	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3550	fi
3551	if [[ $run_coupled_model = false ]]
3552	then
3553	if [[ "$ocean_file_appendix" = true ]]
3554	then
3555	echo "precursor_ocean" > runfile_atmos
3556	else
3557	echo "precursor_atmos" > runfile_atmos
3558	fi
3559	printf "\n\n"
3560	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3561	then
3562	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3563	then
3564	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3565	# export MPI_DSM_DISTRIBUTE=1
3566	# MPI_DSM_CPULIST: pin MPI processes to cores
3567	if [[ $use_openmp = false ]]
3568	then
3569	if [[ "$sgi_feature" = ice2 ]]
3570	then
3571	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3572	else
3573	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3574	fi
3575	else
3576	unset MPI_DSM_CPULIST
3577	fi
3578	# MPI_IB_RAILS: use both IB rails on ICE2
3579	export MPI_BUFS_PER_HOST=512
3580	export MPI_IB_RAILS=2
3581	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3582	export MPI_CONNECTIONS_THRESHOLD=8192
3583	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3584	export MPI_TYPE_DEPTH=20
3585	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3586	export MPI_GROUP_MAX=64
3587	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3588	if [[ $use_openmp = true ]]
3589	then
3590	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3591	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3592	else
3593	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3594	fi
3595
3596	# next is test for openmp usage
3597	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3598	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3599	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3600	then
3601	export MV2_NUM_PORTS=2
3602	# The default setting of MV2_CPU_MAPPING gives best results
3603	# export MV2_ENABLE_AFFINITY=1
3604	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3605	# if [[ "$sgi_feature" = ice2 ]]
3606	# then
3607	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3608	# else
3609	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3610	# fi
3611	if [[ $use_openmp = true ]]
3612	then
3613	unset MV2_CPU_MAPPING
3614	export MV2_ENABLE_AFFINITY=0
3615	fi
3616	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3617	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3618	if [[ $use_openmp = true ]]
3619	then
3620	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3621	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3622	else
3623	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3624	fi
3625	elif [[ "$mpilib" = impi ]]
3626	then
3627	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3628	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3629	fi
3630	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3631	then
3632	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3633	elif [[ $host = lcflow ]]
3634	then
3635	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3636	elif [[ $host = lcsb ]]
3637	then
3638	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3639	elif [[ $host = lckiaps ]]
3640	then
3641	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3642	elif [[ $host = lckyu* ]]
3643	then
3644	mpiexec -n $ii ./a.out < runfile_atmos $ROPTS
3645	else
3646	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3647	fi
3648	else
3649
3650	# currently there is no full MPI-2 support on ICE and XT4
3651	(( iia = $numprocs_atmos / $threads_per_task ))
3652	(( iio = $numprocs_ocean / $threads_per_task ))
3653	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3654	printf "\n using $coupled_mode coupling"
3655	printf "\n\n"
3656
3657	if [[ $coupled_mode = "mpi2" ]]
3658	then
3659	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3660	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3661	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3662	then
3663
3664	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3665	then
3666	# export MPI_LAUNCH_TIMEOUT=360
3667	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3668	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3669	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3670	then
3671	# ulimit -s 300000 # A too large stack size causes problems
3672	# export MV2_NUM_PORTS=2
3673	# export MV2_CPU_MAPPING=0:1:2:3
3674	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3675	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3676	fi
3677
3678	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3679	then
3680
3681	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3682	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3683
3684	else
3685	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3686	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3687	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3688	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3689	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3690	fi
3691	wait
3692
3693	else
3694
3695	echo "coupled_run $iia $iio" > runfile_atmos
3696	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3697	then
3698
3699	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3700	then
3701	# export MPI_LAUNCH_TIMEOUT=360
3702	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3703	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3704	then
3705	# ulimit -s 300000 # A too large stack size causes problems
3706	# export MV2_NUM_PORTS=2
3707	# export MV2_CPU_MAPPING=0:1:2:3
3708	mpiexec ./a.out $ROPTS < runfile_atmos
3709	fi
3710
3711	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3712	then
3713
3714	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3715
3716	elif [[ $host = lck \|\| $host = lckordi ]]
3717	then
3718	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3719	fi
3720	wait
3721	fi
3722
3723	fi
3724	elif [[ $host = lckyoto ]]
3725	then
3726	set -xv
3727	export P4_RSHCOMMAND=plesh
3728	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3729	if [[ "$ENVIRONMENT" = BATCH ]]
3730	then
3731	if [[ "$cond2" = fujitsu ]]
3732	then
3733	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3734	elif [[ "cond2" = pgi ]]
3735	then
3736	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3737	else
3738	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3739	fi
3740	else
3741	if [[ "$cond2" = "" ]]
3742	then
3743	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3744	else
3745	mpirun -np $numprocs ./a.out $ROPTS
3746	fi
3747	fi
3748	set +xv
3749	elif [[ $host = lctit ]]
3750	then
3751	export OMP_NUM_THREADS=$threads_per_task
3752	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3753	if [[ "$threads_per_task" != 1 ]]
3754	then
3755	export MV2_ENABLE_AFFINITY=0
3756	fi
3757	echo "----- PBS_NODEFILE content:"
3758	cat $PBS_NODEFILE
3759	echo "-----"
3760	(( ii = $numprocs / $threads_per_task ))
3761	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3762	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3763	else
3764	mpprun -n $numprocs a.out $ROPTS
3765	fi
3766	[[ $? != 0 ]] && execution_error=true
3767
3768
3769	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3770	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3771	then
3772	apprentice
3773	fi
3774	else
3775	a.out $ROPTS
3776	fi
3777	fi
3778	if [[ $? != 0 \|\| $execution_error = true ]]
3779	then
3780
3781	# ABBRUCH BEI LAUFZEITFEHLER
3782	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3783	printf "\n +++ runtime error occured"
3784	locat=execution
3785	exit
3786	else
3787	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3788	printf "\n$striche\n *** execution finished \n"
3789
3790	# Stop the dvr streaming server and process the dvr output in order
3791	# to create dvrs- and html-files containing all streams
3792	if [[ "$dvrserver_id" != "" ]]
3793	then
3794	kill $dvrserver_id
3795	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3796
3797	# If there is a directory, data have been output by the
3798	# streaming server. Otherwise, user has chosen dvrp_output=local
3799	if [[ -d DATA_DVR ]]
3800	then
3801
3802	# Add the current dvr configuration file to the dvr output
3803	# directory
3804	cp .dvrserver.config DATA_DVR
3805
3806	# Process the dvr output (option -s for also generating
3807	# sequence mode data)
3808	process_dvr_output -d DATA_DVR -f $fname -s
3809
3810	else
3811
3812	# Process the local output
3813	process_dvr_output -l -d DATA_DVR -f $fname
3814
3815	fi
3816
3817	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3818	then
3819
3820	# Process dvr output generated in local mode (dvrp_output=local)
3821	process_dvr_output -l -d DATA_DVR -f $fname
3822
3823	fi
3824	fi
3825
3826
3827
3828	# Call of combine_plot_fields in order to merge single files written
3829	# by each PE into one file.
3830	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3831	then
3832	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3833	printf "\n 2d- and/or 3d-data may be incomplete!"
3834	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3835	elif [[ "$combine_plot_fields" == true ]]
3836	then
3837	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3838	combine_plot_fields${block}.x
3839	else
3840	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3841	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3842	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3843	fi
3844
3845
3846
3847	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3848	(( i = 0 ))
3849	while (( i < ioc ))
3850	do
3851	(( i = i + 1 ))
3852	if (( i == 1 ))
3853	then
3854	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3855	fi
3856	printf "\n >>> ${out_command[$i]}"
3857	eval ${out_command[$i]}
3858	if (( i == ioc ))
3859	then
3860	printf "\n$striche\n"
3861	fi
3862	done
3863
3864
3865	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3866	if [[ $do_trace = true ]]
3867	then
3868	printf "\n\n"
3869	ls -al
3870	fi
3871
3872
3873
3874	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3875	(( i = 0 ))
3876	while (( i < iout ))
3877	do
3878	(( i = i + 1 ))
3879	if (( i == 1 ))
3880	then
3881	printf "\n\n *** saving OUTPUT-files:\n$striche"
3882	fi
3883
3884	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3885	files_for_pes=false; filetyp=file
3886	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3887	then
3888	files_for_pes=true; filetyp=directory
3889	actionout[$i]=""
3890	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3891	then
3892	actionout[$i]=""
3893	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3894	then
3895	files_for_pes=true; filetyp=directory
3896	actionout[$i]="ar"
3897	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3898	then
3899	actionout[$i]="ar"
3900	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3901	then
3902	files_for_pes=true; filetyp=directory
3903	actionout[$i]="fl"
3904	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3905	then
3906	actionout[$i]="fl"
3907	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3908	then
3909	files_for_pes=true; filetyp=directory
3910	actionout[$i]="tr"
3911	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3912	then
3913	actionout[$i]="tr"
3914	fi
3915
3916	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3917	then
3918	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3919	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3920	then
3921	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3922	else
3923
3924
3925	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3926	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3927	# REMOTE-RECHNUNGEN
3928	if [[ "${actionout[$i]}" = tr ]]
3929	then
3930	if [[ $localhost != $fromhost ]]
3931	then
3932	if [[ $files_for_pes = false ]]
3933	then
3934	cps=""
3935	cst=""
3936	else
3937	cps=-c
3938	cst="/"
3939	fi
3940	if [[ $localhost = nech ]]
3941	then
3942
3943	# TRANSFER IN EIGENSTAENDIGEM JOB
3944	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3945	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3946	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3947	if [[ $files_for_pes = false ]]
3948	then
3949	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3950	else
3951	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3952	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3953	fi
3954
3955	echo "set -x" > transfer_${localout[$i]}
3956	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3957
3958	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3959	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3960	printf "\n or higher cycle\n"
3961	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3962
3963	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3964
3965	if [[ $localhost = nech ]]
3966	then
3967	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3968	else
3969	if [[ "$LOGNAME" = b323013 ]]
3970	then
3971	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3972	else
3973	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3974	fi
3975	fi
3976
3977	else
3978
3979	# TRANSFER INNERHALB DIESES JOBS
3980	transfer_failed=false
3981	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3982	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3983	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3984	[[ $? != 0 ]] && transfer_failed=true
3985
3986	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3987	# LOKALER MASCHINE ANLEGEN
3988	if [[ $transfer_failed = true ]]
3989	then
3990	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3991	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3992
3993	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3994	# ANLEGEN.
3995	eval local_catalog=${pathout[$i]}
3996	if [[ ! -d $local_catalog ]]
3997	then
3998	printf " *** local directory does not exist. Trying to create:\n"
3999	printf " $local_catalog \n"
4000	mkdir -p $local_catalog
4001	fi
4002	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4003	transfer_problems=true
4004	fi
4005	fi
4006	else
4007
4008	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4009	actionout[$i]=""
4010	fi
4011	fi
4012
4013
4014	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4015	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4016	# REMOTE-RECHNUNGEN
4017	if [[ "${actionout[$i]}" = tra ]]
4018	then
4019	if [[ $localhost != $fromhost ]]
4020	then
4021	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4022	then
4023
4024	# TRANSFER IN EIGENSTAENDIGEM JOB
4025	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4026	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4027	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4028	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4029
4030	echo "set -x" > transfer_${localout[$i]}
4031	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4032
4033	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4034	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4035	printf "\n or higher cycle\n"
4036	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4037
4038	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4039
4040	if [[ $localhost = nech ]]
4041	then
4042	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4043	else
4044	if [[ $LOGNAME = b323013 ]]
4045	then
4046	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4047	else
4048	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4049	fi
4050	fi
4051
4052	else
4053
4054	# TRANSFER INNERHALB DIESES JOBS
4055	transfer_failed=false
4056	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4057	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4058	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4059	[[ $? != 0 ]] && transfer_failed=true
4060
4061	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4062	# LOKALER MASCHINE ANLEGEN
4063	if [[ $transfer_failed = true ]]
4064	then
4065	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4066	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4067
4068	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4069	# ANLEGEN
4070	eval local_catalog=${pathout[$i]}
4071	if [[ ! -d $local_catalog ]]
4072	then
4073	printf " *** local directory does not exist. Trying to create:\n"
4074	printf " $local_catalog \n"
4075	mkdir -p $local_catalog
4076	fi
4077
4078	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4079	transfer_problems=true
4080	fi
4081	fi
4082	else
4083
4084	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4085	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4086	actionout[$i]=a
4087	fi
4088	fi
4089
4090
4091	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4092	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4093	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4094	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4095	if [[ "${actionout[$i]}" = fl ]]
4096	then
4097	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4098	chmod g+rx $tmp_data_catalog
4099	if [[ $files_for_pes = false ]]
4100	then
4101	printf "\n >>> OUTPUT: ${localout[$i]} to"
4102	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4103	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4104	else
4105	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4106	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4107	mkdir $tmp_data_catalog/${frelout[$i]}
4108	cd ${localout[$i]}
4109	for file in $(ls *)
4110	do
4111	ln -f $file $tmp_data_catalog/${frelout[$i]}
4112	done
4113	cd $TEMPDIR
4114	fi
4115
4116
4117	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4118	if [[ $store_on_archive_system = true ]]
4119	then
4120
4121	if [[ $archive_system = asterix ]]
4122	then
4123	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4124	if [[ $files_for_pes = false ]]
4125	then
4126	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4127	else
4128	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4129	fi
4130	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4131	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4132	echo "then" >> archive_${frelout[$i]}
4133	echo " do_stageout=false" >> archive_${frelout[$i]}
4134	echo "else" >> archive_${frelout[$i]}
4135	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4136	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4137	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4138	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4139	if [[ $files_for_pes = false ]]
4140	then
4141	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4142	else
4143	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4144	fi
4145	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4146	echo "fi" >> archive_${frelout[$i]}
4147	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4148	elif [[ $archive_system = DMF ]]
4149	then
4150	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4151	if [[ $files_for_pes = false ]]
4152	then
4153	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4154	locat=DMF
4155	exit
4156	else
4157	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4158	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4159	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4160	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4161	fi
4162	elif [[ $archive_system = tivoli ]]
4163	then
4164	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4165	if [[ $files_for_pes = false ]]
4166	then
4167	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4168	echo "set -x" >> archive_${frelout[$i]}
4169	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4170	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4171	else
4172
4173	echo "set -x" >> archive_${frelout[$i]}
4174	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4175	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4176	cd $tmp_data_catalog
4177	all_files=`ls -1 ${frelout[$i]}/*`
4178	cd - > /dev/null
4179	(( inode = 0 ))
4180	(( tp1 = tasks_per_node + 1 ))
4181	while (( inode < nodes ))
4182	do
4183	# echo "*** all_files = \"$all_files\" "
4184	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4185	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4186	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4187	# echo "*** files = \"$files\" "
4188	# echo "*** all_files = \"$all_files\" "
4189	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4190	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4191	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4192	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4193	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4194	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4195	(( inode = inode + 1 ))
4196	done
4197	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4198	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4199	fi
4200	elif [[ $archive_system = ut ]]
4201	then
4202	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4203	if [[ $files_for_pes = false ]]
4204	then
4205	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4206	echo "set -x" >> archive_${frelout[$i]}
4207	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4208	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4209	else
4210
4211	echo "set -x" >> archive_${frelout[$i]}
4212	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4213	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4214	cd $tmp_data_catalog
4215	all_files=`ls -1 ${frelout[$i]}/*`
4216	cd - > /dev/null
4217	(( inode = 0 ))
4218	(( tp1 = tasks_per_node + 1 ))
4219	while (( inode < nodes ))
4220	do
4221	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4222	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4223	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4224	(( inode = inode + 1 ))
4225	done
4226	fi
4227	elif [[ $archive_system = none ]]
4228	then
4229	printf " +++ archiving on $localhost not available!\n"
4230	fi
4231
4232	if [[ $archive_system != none ]]
4233	then
4234	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4235	then
4236	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4237	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4238	elif [[ $localhost = nech ]]
4239	then
4240	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4241	fi
4242	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4243	fi
4244	else
4245	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4246	fi
4247
4248
4249	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4250	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4251	if [[ $files_for_pes = false ]]
4252	then
4253	cat /dev/null > ${pathout[$i]}
4254	else
4255	mkdir -p ${pathout[$i]}
4256	fi
4257
4258	fi
4259
4260
4261	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4262	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4263	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4264	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4265	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4266	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4267	if [[ "${actionout[$i]}" = ar ]]
4268	then
4269	if [[ $files_for_pes = false ]]
4270	then
4271	printf "\n >>> OUTPUT: ${localout[$i]} to"
4272	printf "\n ${pathout[$i]}"
4273	printf "\n File will be copied to archive-system ($archive_system) !\n"
4274	else
4275	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4276	printf "\n ${pathout[$i]}"
4277	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4278	fi
4279	mv ${localout[$i]} ${frelout[$i]}
4280
4281	file_saved=false
4282
4283	if [[ $archive_system = asterix ]]
4284	then
4285	do_stageout=true
4286	(( stageout_anz = 0 ))
4287	while [[ $do_stageout = true ]]
4288	do
4289	if [[ $files_for_pes = false ]]
4290	then
4291	stageout ${frelout[$i]} > STAGE_OUTPUT
4292	else
4293	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4294	fi
4295	cat STAGE_OUTPUT
4296	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4297	then
4298	file_saved=true
4299	do_stageout=false
4300	else
4301	if [[ $files_for_pes = false ]]
4302	then
4303	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4304	else
4305	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4306	fi
4307	(( stageout_anz = stageout_anz + 1 ))
4308	if (( stageout_anz == 10 ))
4309	then
4310	printf "\n +++ stoped after 10 unsuccessful tries!"
4311	archive_save=false
4312	do_stageout=false
4313	else
4314	printf "\n *** new try to store on archive after 15 min:"
4315	sleep 900
4316	fi
4317	fi
4318	done
4319	elif [[ $archive_system = DMF ]]
4320	then
4321	if [[ $files_for_pes = false ]]
4322	then
4323	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4324	locat=DMF
4325	exit
4326	else
4327	rm -rf $ARCHIVE/${frelout[$i]}
4328	cp -r ${frelout[$i]} $ARCHIVE
4329	fi
4330	file_saved=true
4331	elif [[ $archive_system = tivoli ]]
4332	then
4333	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4334	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4335	# GELEGT WERDEN
4336	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4337	chmod g+rx $tmp_data_catalog
4338	if [[ $files_for_pes = false ]]
4339	then
4340	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4341	else
4342	mkdir $tmp_data_catalog/${frelout[$i]}
4343	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4344	fi
4345
4346	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4347	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4348	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4349	if [[ $files_for_pes = false ]]
4350	then
4351	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4352	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4353	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4354	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4355	else
4356	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4357	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4358	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4359	fi
4360
4361	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4362	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4363	file_saved=true
4364
4365	elif [[ $archive_system = ut ]]
4366	then
4367	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4368	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4369	# GELEGT WERDEN
4370	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4371	chmod g+rx $tmp_data_catalog
4372	if [[ $files_for_pes = false ]]
4373	then
4374	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4375	else
4376	mkdir $tmp_data_catalog/${frelout[$i]}
4377	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4378	fi
4379
4380	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4381	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4382	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4383	if [[ $files_for_pes = false ]]
4384	then
4385	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4386	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4387	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4388	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4389	else
4390	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4391	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4392	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4393	fi
4394
4395	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4396	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4397	file_saved=true
4398
4399	else
4400	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4401	archive_save=false
4402	fi
4403	if [[ $file_saved = true ]]
4404	then
4405	if [[ $files_for_pes = false ]]
4406	then
4407	cat /dev/null > ${pathout[$i]}
4408	else
4409	mkdir -p ${pathout[$i]}
4410	fi
4411	fi
4412	fi
4413
4414	# APPEND AUF LOKALER MASCHINE
4415	if [[ "${actionout[$i]}" = "a" ]]
4416	then
4417	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4418	then
4419	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4420	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4421	else
4422	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4423	cat ${localout[$i]} >> ${pathout[$i]}
4424	fi
4425	fi
4426
4427	# KOPIEREN AUF LOKALER MASCHINE
4428	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4429	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4430	then
4431
4432	# KOPIEREN AUF EINPROZESSORMASCHINE
4433	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4434	then
4435	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4436	if [[ $link_local_output = true ]]
4437	then
4438	printf " using ln -f\n"
4439	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4440	fi
4441	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4442	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4443	then
4444	if [[ $link_local_output = true ]]
4445	then
4446	printf " ln failed, using cp...\n"
4447	fi
4448	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4449	fi
4450	else
4451	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4452	if [[ $link_local_output = true ]]
4453	then
4454	printf " using ln -f\n"
4455	ln -f ${localout[$i]} ${pathout[$i]}
4456	fi
4457	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4458	if [[ ! -f "${pathout[$i]}" ]]
4459	then
4460	if [[ $link_local_output = true ]]
4461	then
4462	printf " ln failed, using cp...\n"
4463	fi
4464	cp ${localout[$i]} ${pathout[$i]}
4465	fi
4466	fi
4467
4468	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4469	then
4470
4471	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4472	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4473	# WIRD DANN KOPIERT
4474	# PER MOVE UMBENANNT WERDEN
4475	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4476	if [[ $link_local_output = true ]]
4477	then
4478	printf " using ln -f\n"
4479	mkdir ${pathout[$i]}
4480	cd ${localout[$i]}
4481	for file in $(ls *)
4482	do
4483	ln -f $file ${pathout[$i]}
4484	done
4485	cd $TEMPDIR
4486	fi
4487	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4488	if [[ ! -f "${pathout[$i]}/_0000" ]]
4489	then
4490	if [[ $link_local_output = true ]]
4491	then
4492	printf " ln failed for .../_0000, using cp...\n"
4493	fi
4494	cp -r ${localout[$i]} ${pathout[$i]}
4495	fi
4496
4497	fi
4498	fi
4499	done
4500	if (( i != 0 ))
4501	then
4502	if [[ $transfer_problems = true ]]
4503	then
4504	printf "\n$striche\n *** OUTPUT-files saved"
4505	printf "\n +++ WARNING: some data transfers failed! \n"
4506	else
4507	printf "\n$striche\n *** all OUTPUT-files saved \n"
4508	fi
4509	fi
4510
4511
4512	# EVENTUELL FOLGEJOB STARTEN
4513	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4514	if [[ -f CONTINUE_RUN ]]
4515	then
4516
4517	if [[ $archive_save = true ]]
4518	then
4519
4520	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4521	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4522	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4523	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4524	# HANDEN
4525	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4526	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4527	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4528	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4529	then
4530	mc=`echo $mc \| sed 's/#/f/g'`
4531	fi
4532
4533
4534	# JOB STARTEN
4535	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4536	echo " $mc"
4537	printf "\n$striche\n"
4538	if [[ $localhost != $fromhost ]]
4539	then
4540
4541	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4542	then
4543	echo "*** ssh will be used to initiate restart-runs!"
4544	echo " return_addres=\"$return_addres\" "
4545	echo " return_username=\"$return_username\" "
4546	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4547	then
4548	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4549	else
4550	if [[ $localhost = ibmkisti ]]
4551	then
4552	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4553	else
4554	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4555	fi
4556	fi
4557	else
4558	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4559	locat=restart; exit
4560	fi
4561
4562	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4563	# DER AKTUELLE JOB ENDET
4564	if [[ $queue = special1q ]]
4565	then
4566	sleep 120
4567	else
4568	sleep 30
4569	fi
4570
4571	else
4572
4573	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4574	# RUFEN WERDEN, AUSSER AUF lcfimm
4575	cd $LOCAL_PWD
4576	if [[ $localhost = lcfimm ]]
4577	then
4578	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4579	else
4580	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4581	fi
4582	cd - > /dev/null
4583	fi
4584	printf "\n$striche\n *** restart-run initiated \n"
4585
4586
4587	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4588	# GEHOLT WORDEN SIND, LOESCHEN
4589	(( i = 0 ))
4590	while (( i < iin ))
4591	do
4592	(( i = i + 1 ))
4593	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4594	then
4595	rm -r $tmp_data_catalog/${frelin[$i]}
4596	fi
4597	done
4598
4599	else
4600
4601	printf "\n +++ no restart-run possible, since errors occured"
4602	printf "\n during the archive process"
4603	fi
4604
4605	fi
4606
4607
4608
4609	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4610	if [[ "$email_notification" != "none" ]]
4611	then
4612
4613	if [[ $localhost != $fromhost ]]
4614	then
4615	if [[ -f CONTINUE_RUN ]]
4616	then
4617	echo "PALM restart run necessary" > email_text
4618	echo "description header of actual run:" >> email_text
4619	cat CONTINUE_RUN >> email_text
4620	echo "mrun-command to restart:" >> email_text
4621	echo "$mc" >> email_text
4622	else
4623	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4624	fi
4625	mail $email_notification < email_text
4626	printf "\n *** email notification sent to \"$email_notification\" "
4627	fi
4628	fi
4629
4630
4631
4632	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4633	cd $HOME
4634	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4635
4636	else
4637
4638
4639	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4640	# CHENDE AKTIONEN DURCHGEFUEHRT
4641
4642	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4643	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4644	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4645	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4646	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4647	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4648	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4649	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4650	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4651	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4652	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4653	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4654	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4655	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4656	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4657	if [[ $use_openmp = true ]]
4658	then
4659	mrun_com=${mrun_com}" -O $threads_per_task"
4660	fi
4661	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4662	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4663	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4664	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4665	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4666	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4667	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4668	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4669	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4670	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4671	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4672	if [[ $do_remote = true ]]
4673	then
4674	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4675	fi
4676
4677
4678	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4679	jobfile=jobfile.$RANDOM
4680
4681
4682	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4683	echo "mkdir $TEMPDIR" >> $jobfile
4684	echo "cd $TEMPDIR" >> $jobfile
4685
4686
4687	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4688	if [[ $do_trace = true ]]
4689	then
4690	echo "set -x" >> $jobfile
4691	else
4692	echo "set +vx" >> $jobfile
4693	fi
4694
4695
4696	# initialize the environment and load modules
4697	if [[ "$init_cmds" != "" ]]
4698	then
4699	echo "$init_cmds" >> $jobfile
4700	fi
4701	if [[ "$module_calls" != "" ]]
4702	then
4703	echo "$module_calls" >> $jobfile
4704	fi
4705
4706
4707	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4708	# DATEI FUER DEN JOB
4709	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4710	then
4711
4712	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4713	# KOPIEREN
4714	if [[ $restart_run != true ]]
4715	then
4716	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4717	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4718	fi
4719
4720	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4721	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4722	echo "set -x" >> $jobfile
4723	if [[ $host = $localhost ]]
4724	then
4725	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4726	else
4727	if [[ $host != ibmkisti ]]
4728	then
4729	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4730	else
4731	# on KISTI's IBM firewall is only opened on interactive node
4732	echo "localdir=\`pwd\`" >> $jobfile
4733	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4734	fi
4735	fi
4736	echo "export SOURCES_COMPLETE=true" >> $jobfile
4737
4738	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4739	# ARBEITSVERZEICHNIS VERSCHIEBEN
4740	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4741	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4742	echo "execute_mrun=true" >> $jobfile
4743	echo " " >> $jobfile
4744
4745	else
4746
4747	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4748	# SOWIE GEGEBENENFALLS DES MAKEFILES
4749	if [[ $do_compile = true ]]
4750	then
4751
4752	source_catalog=SOURCES_FOR_RUN_$fname
4753
4754	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4755	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4756	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4757	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4758	echo "export SOURCES_COMPLETE=true" >> $jobfile
4759	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4760
4761	for filename in $source_list
4762	do
4763	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4764	echo "cat > $filename << \"%END%\"" >> $jobfile
4765	cat $source_catalog/$filename >> $jobfile
4766	echo " " >> $jobfile
4767	echo "%END%" >> $jobfile
4768	echo " " >> $jobfile
4769	done
4770
4771	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4772	echo "cat > Makefile << \"%END%\"" >> $jobfile
4773	cat $source_catalog/Makefile >> $jobfile
4774	echo " " >> $jobfile
4775	echo "%END%" >> $jobfile
4776	echo " " >> $jobfile
4777
4778	echo "cd - > /dev/null" >> $jobfile
4779
4780	fi
4781
4782
4783	# ABSPEICHERN DER KONFIGURATIONSDATEI
4784	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4785	# Lines with #$ coming from the svn keyword substitution are
4786	# removed from the config file in order to avoid problems
4787	# with the SGE batch system
4788	echo "cat > $config_file << \"%END%\"" >> $jobfile
4789	if [[ $host = lckyuh ]]
4790	then
4791	# no cross compiler on compute node
4792	sed 's/frtpx/frt/g' $config_file >> $jobfile
4793	else
4794	sed 's/#$.*//g' $config_file >> $jobfile
4795	fi
4796	echo "%END%" >> $jobfile
4797	echo " " >> $jobfile
4798
4799
4800	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4801	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4802	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4803	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4804	echo "%END%" >> $jobfile
4805	echo "chmod u+x $mrun_script_name" >> $jobfile
4806	echo "execute_mrun=true" >> $jobfile
4807	echo " " >> $jobfile
4808
4809	fi
4810
4811
4812	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4813	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4814	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4815	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4816	if [[ $do_remote = true ]]
4817	then
4818	(( i = 0 ))
4819	while (( i < iin ))
4820	do
4821	(( i = i + 1 ))
4822	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4823	if [[ "${transin[$i]}" = job ]]
4824	then
4825	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4826	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4827	echo " " >> $jobfile
4828	echo "%END%" >> $jobfile
4829	else
4830	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4831	fi
4832
4833	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4834	echo "if [[ \$? = 1 ]]" >> $jobfile
4835	echo "then" >> $jobfile
4836	echo " echo \" \" " >> $jobfile
4837	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4838	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4839	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4840	echo " execute_mrun=false" >> $jobfile
4841	echo "fi" >> $jobfile
4842	done
4843	fi
4844
4845	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4846	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4847	echo "LOCAL_PWD=$working_directory" >> $jobfile
4848	echo "export LOCAL_PWD" >> $jobfile
4849
4850	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4851	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4852	echo "export LOCAL_MRUN_PATH" >> $jobfile
4853
4854	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4855	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4856	then
4857	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4858	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4859	then
4860	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4861	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4862	fi
4863
4864	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4865	echo "set -x" >> $jobfile
4866	echo "queue=$queue" >> $jobfile
4867	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4868	echo 'ls -al; echo `pwd`' >> $jobfile
4869	echo "cd \$HOME" >> $jobfile
4870	echo "rm -rf $TEMPDIR" >> $jobfile
4871
4872
4873
4874
4875	# JOB PER SUBJOB STARTEN
4876	if [[ $silent = false ]]
4877	then
4878	printf "\n "
4879	else
4880	printf "\n\n"
4881	fi
4882
4883	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4884	rm -rf $jobfile
4885
4886
4887	fi # ENDE REMOTE-TEIL
4888
4889
4890
4891	# ENDE DER PROZEDUR

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