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source: palm/trunk/SCRIPTS/mrun @ 1101

Last change on this file since 1101 was 1101, checked in by raasch, 11 years ago
mrun script now running under bash; small adjustment for lckyuh
Property svn:keywords set to `Id Rev`
File size: 178.5 KB

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1	#!/bin/bash
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# script now running under bash instead of ksh, which required small adjustments
25	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
26	# read from stdin),
27	# cross comilername on lckyuh compute nodes replaced by real compiler name
28	#
29	# Former revisions:
30	# -----------------
31	# $Id: mrun 1101 2013-02-17 10:20:21Z raasch $
32	#
33	# 1099 2013-02-10 01:47:43Z raasch
34	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
35	# and for Forwind cluster (lcflow)
36	# small further adjustments for lckyut
37	#
38	# 1094 2013-02-03 01:52:12Z raasch
39	# explicit ssh/scp port can be set in config file with environment variable
40	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
41	# decalpha parts (yonsei) removed
42	#
43	# 2013-02-02 07:06:13Z raasch
44	# adjustments for Kyushu-University computing center (lckyut - tatara)
45	#
46	# 1083 2013-01-04 10:22:09Z maronga
47	# bugfix in parameter file check (read %cpp_options was missing)
48	#
49	# 1069 2012-11-28 16:18:43Z maronga
50	# bugfix: coupling mode was always set to mpi2, typos removed
51	#
52	# 1058 2012-11-21 07:00:35Z raasch
53	# Intel inspector (inspxe) is given the number of PEs instead of the number of
54	# nodes
55	#
56	# 1046 2012-11-09 14:38:45Z maronga
57	# code put under GPL (PALM 3.9)
58	#
59	# 21/03/94 - Siggi - first version finished
60	# 03/03/94 - Siggi - script development started
61	#
62	#--------------------------------------------------------------------------------#
63	# mrun - script for running PALM jobs
64	#--------------------------------------------------------------------------------#
65
66
67
68	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
69
70	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
71	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
72	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
73
74	AddFilenames=""
75	additional_conditions=""
76	add_source_path=""
77	afname=""
78	archive_save=true
79	archive_system=none
80	check_namelist_files=true
81	combine_plot_fields=true
82	compiler_name=""
83	cond1=""
84	cond2=""
85	config_file=.mrun.config
86	coupled_dist=""
87	coupled_mode="mpi1"
88	cpp_opts=""
89	cpp_options=""
90	cpumax=0
91	cpurest=0
92	delete_temporary_catalog=true
93	do_batch=false
94	do_compile=true
95	do_remote=false
96	do_stagein=true
97	do_stageout=true
98	do_trace=false
99	email_notification="none"
100	exclude=""
101	executable=""
102	execution_error=false
103	fimm=false
104	fname=test
105	fromhost=""
106	global_revision=""
107	group_number=none
108	host=""
109	host_file=""
110	hp=""
111	ignore_archive_error=false
112	input_list=""
113	interpreted_config_file=""
114	job_catalog="~/job_queue"
115	job_on_file=""
116	keep_data_from_previous_run=false
117	link_local_input=false
118	link_local_output=false
119	localhost_realname=$(hostname)
120	local_compile=false
121	local_dvrserver_running=.FALSE.
122	locat=normal
123	mainprog=""
124	makefile=""
125	max_par_io_str=""
126	mc=$0
127	while [[ $(echo $mc \| grep -c "/") != 0 ]]
128	do
129	mc=`echo $mc \| cut -f2- -d"/"`
130	done
131	module_calls=""
132	mrun_script_name=$mc
133	netcdf_inc=""
134	netcdf_lib=""
135	netcdf_support=false
136	node_usage=default
137	numprocs=""
138	numprocs_atmos=0
139	numprocs_ocean=0
140	OOPT=""
141	openmp=false
142	output_list=""
143	package_list=""
144	punkte="..........................................................."
145	queue=none
146	read_from_config=""
147	restart_run=false
148	if [[ `hostname` = rte10 ]]
149	then
150	return_addres=133.5.185.60
151	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
152	elif [[ `hostname` = climate0 ]]
153	then
154	return_addres=165.132.26.68
155	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
156	elif [[ `hostname` = urban00 ]]
157	then
158	return_addres=147.46.30.151
159	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
160	else
161	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
162	fi
163	return_password=""
164	return_username=$LOGNAME
165	remotecall=false
166	remote_username=""
167	run_coupled_model=false
168	run_mode=""
169	scirocco=false
170	store_on_archive_system=false
171	striche=" ----------------------------------------------------------------------------"
172	silent=false
173	source_list=""
174	source_path=SOURCE
175	tasks_per_node=""
176	threads_per_task=1
177	tmpcreate=false
178	tmp_data_catalog=""
179	transfer_problems=false
180	usern=$LOGNAME
181	use_openmp=false
182	version="MRUN 2.0 Rev$Rev: 1101 $"
183	working_directory=`pwd`
184	TOPT=""
185	XOPT=""
186	zeit=$( date \| cut -c 12-19 )
187
188	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
189	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
190
191
192
193
194	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
195	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
196
197	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
198	# EXPORTIERT WERDEN
199	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
200	export group_number input_list memory numprocs output_list queue run_mode
201
202
203
204	# FEHLERBEHANDLUNG
205	# BEI EXIT:
206	trap 'rm -rf $working_directory/tmp_mrun
207	if [[ $locat != localhost ]]
208	then
209	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
210	# then
211	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
212	#MRUN-calls on $localhost
213	#
214	#date and time user localhost remotehost termination mrun-command
215	#--------------------------------------------------------------------------------------------------------------------
216	#%STATEND%
217	# chmod 666 ${mrun_path}/statistik/mrun_statistik
218	# fi
219	#
220	# # EINTRAG IN DIE STATISTIK-DATEI
221	# string1=`date` #-L35
222	# string2=$usern #-L12
223	# string3=$localhost_realname #-L12
224	# string4=$host #-L12
225	# string5=$locat #-L12
226	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
227	# then
228	# if [[ $do_batch = true ]]
229	# then
230	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
231	# else
232	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
233	# fi
234	# fi
235	echo " " > /dev/null
236	fi
237
238	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
239	then
240
241	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
242	(( i = 0 ))
243	while (( i < iec ))
244	do
245	(( i = i + 1 ))
246	printf "\n *** Execution of ERROR-command:\n"
247	printf " >>> ${err_command[$i]}\n"
248	eval ${err_command[$i]}
249	done
250	if [[ -n $interpreted_config_file ]]
251	then
252	rm -rf $interpreted_config_file
253	fi
254	if [[ -n .mrun_environment ]]
255	then
256	rm -rf .mrun_environment
257	fi
258	if [[ $tmpcreate = true ]]
259	then
260	printf "\n *** Contents of \"$TEMPDIR\":\n"
261	ls -al; cd
262	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
263	fi
264	if [[ "$dvrserver_id" != "" ]]
265	then
266	echo "+++ killing dvrserver_id=$dvrserver_id"
267	kill $dvrserver_id
268	fi
269	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
270	then
271	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
272	fi
273	printf "\n\n+++ MRUN killed \n\n"
274	elif [[ $locat != control_c ]]
275	then
276	printf "\n\n --> all actions finished\n\n"
277	printf " Bye, bye $usern !!\n\n"
278	fi' exit
279
280
281	# BEI TERMINAL-BREAK:
282	trap 'rm -rf $working_directory/tmp_mrun
283	rm -rf $working_directory/tmp_check_namelist_files
284	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
285	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
286	then
287	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
288	fi
289	if [[ "$dvrserver_id" != "" ]]
290	then
291	echo "+++ killing dvrserver_id=$dvrserver_id"
292	kill $dvrserver_id
293	fi
294	printf "\n+++ MRUN killed by \"^C\" \n\n"
295	locat=control_c
296	exit
297	' 2
298
299
300	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
301	# BEEN SET
302	if [[ "$PALM_BIN" = "" ]]
303	then
304	printf "\n +++ environment variable PALM_BIN has not been set"
305	printf "\n please set it to the directory where the PALM scripts are located"
306	locat=palm_bin; exit
307	fi
308	export PATH=$PALM_BIN:$PATH
309
310
311
312	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
313	# FUER FOLGEJOBS BENOETIGT WIRD
314	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
315	do
316	case $option in
317	(a) afname=$OPTARG;;
318	(A) store_on_archive_system=true; mc="$mc -A";;
319	(b) do_batch=true; mc="$mc -b";;
320	(B) delete_temporary_catalog=false; mc="$mc -B";;
321	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
322	(C) restart_run=true; mc="$mc -C";;
323	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
324	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
325	(F) job_on_file="-D"; mc="$mc -F";;
326	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
327	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
328	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
329	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
330	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
331	(I) ignore_archive_error=true; mc="$mc -I";;
332	(k) keep_data_from_previous_run=true; mc="$mc -k";;
333	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
334	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
335	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
336	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
337	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
338	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
339	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
340	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
341	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
342	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
343	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
344	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
345	(S) read_from_config=false; mc="$mc -S";;
346	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
347	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
348	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
349	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
350	(v) silent=true; mc="$mc -v";;
351	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
352	(x) do_trace=true;set -x; mc="$mc -x";;
353	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
354	(y) ocean_file_appendix=true; mc="$mc -y";;
355	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
356	(z) check_namelist_files=false; mc="$mc -z";;
357	(Z) combine_plot_fields=false; mc="$mc -Z";;
358	(\?) printf "\n +++ unknown option $OPTARG \n"
359	printf "\n --> type \"$0 ?\" for available options \n"
360	locat=parameter;exit;;
361	esac
362	done
363
364
365	# EVTL. POSITIONSPARAMETER EINLESEN
366	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
367	(( to_shift = $OPTIND - 1 ))
368	shift $to_shift
369
370	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
371	if [[ "$1" = "?" ]]
372	then
373	(printf "\n *** mrun can be called as follows:\n"
374	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
375	printf "\n Description of available options:\n"
376	printf "\n Option Description Default-Value"
377	printf "\n -a base name of input files equiv. -d"
378	printf "\n -A archiving when using file-attribute fl"
379	printf "\n -b batch-job on local machine ---"
380	printf "\n -B do not delete temporary directory at end ---"
381	printf "\n -c configuration file .mrun.config"
382	printf "\n -d base name of files attached to program test"
383	printf "\n -D preprocessor(cpp)-directives \"\" "
384	printf "\n -F create remote job file only ---"
385	printf "\n -h execution host $localhost_realname"
386	printf "\n -i INPUT control list \"\" "
387	printf "\n -I archiving errors of previous batch-jobs"
388	printf "\n will be ignored"
389	printf "\n -k keep data from previous run"
390	printf "\n -K additional conditions for controling"
391	printf "\n usage of conditional code and"
392	printf "\n env-variables in configuration file \"\" "
393	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
394	printf "\n -M Makefile name Makefile"
395	printf "\n -n node usage (shared/not_shared) depending on -h"
396	printf "\n -o OUTPUT control list \"\" "
397	printf "\n -O use OpenMP ---"
398	printf "\n -p software package list \"\" "
399	printf "\n -q queue \"$queue\" "
400	printf "\n -r run control list (combines -i -o) \"\" "
401	printf "\n -s filenames of routines to be compiled \"\" "
402	printf "\n must end with .f, .f90, .F, or .c !"
403	printf "\n use \"..\" for more than one file and wildcards"
404	printf "\n -s LM compiles all locally modified files"
405	printf "\n -S config file interpreted by shellscript ---"
406	printf "\n -t allowed cpu-time in seconds (batch) 0"
407	printf "\n -T tasks per node depending on -h"
408	printf "\n -u username on remote machine \"\" "
409	printf "\n -v no prompt for confirmation ---"
410	printf "\n -w maximum parallel io streams as given by -X"
411	printf "\n -x tracing of mrun for debug purposes ---"
412	printf "\n -X # of processors (on parallel machines) 1"
413	printf "\n -y add appendix \"_O\" to all local output"
414	printf "\n files (ocean precursor runs followed by"
415	printf "\n coupled atmosphere-ocean runs) ---"
416	printf "\n -Y run coupled model, \"#1 #2\" with"
417	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
418	printf "\n -z disable a priori parameter file check ---"
419	printf "\n -Z skip combine_plot_fields at the end of "
420	printf "\n the simulation ---"
421	printf "\n "
422	printf "\n Possible values of positional parameter <modus>:"
423	printf "\n \"?\" - this outline \n\n") \| more
424	exit
425	elif [[ "$1" != "" ]]
426	then
427	printf "\n +++ positional parameter $1 unknown \n"
428	locat=parameter; exit
429	fi
430
431
432
433	# KURZE STARTMELDUNG
434	printf "\n*** $version "
435	printf "\n will be executed. Please wait ..."
436
437
438
439	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
440	if [[ ! -f $config_file ]]
441	then
442	printf "\n\n +++ configuration file: "
443	printf "\n $config_file"
444	printf "\n does not exist"
445	locat=connect; exit
446	fi
447
448
449	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
450	line=""
451	grep "%host_identifier" $config_file > tmp_mrun
452	while read line
453	do
454	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
455	then
456	HOSTNAME=`echo $line \| cut -d" " -s -f2`
457	host_identifier=`echo $line \| cut -d" " -s -f3`
458	if [[ $localhost_realname = $HOSTNAME ]]
459	then
460	localhost=$host_identifier
461	break
462	fi
463	fi
464	done < tmp_mrun
465
466	if [[ "$localhost" = "" ]]
467	then
468	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
469	printf "\n for local host \"$localhost_realname\"."
470	printf "\n Please add line"
471	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
472	printf "\n to the configuration file."
473	locat=localhost; exit
474	fi
475
476
477	# HOSTSPEZIFISCHE VARIABLEN SETZEN
478	case $localhost_realname in
479	(r1\|r2\|h01\|b01) archive_system=tivoli;;
480	(cs*) archive_system=ut;;
481	(fimm.bccs.uib.no) fimm=true;;
482	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
483	(scirocco) scirocco=true;;
484	esac
485
486
487
488	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
489	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
490	[[ "$afname" = "" ]] && afname=$fname
491
492
493	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
494	if [[ "$run_mode" != "" ]]
495	then
496	input_list="$input_list $run_mode"
497	output_list="$output_list $run_mode"
498	fi
499
500
501	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
502	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
503	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
504	# STARTET)
505	if [[ "$fromhost" = "" ]]
506	then
507	fromhost=$localhost
508	fi
509
510
511	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
512	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
513	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
514	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
515	if [[ -n $host && "$host" != $localhost ]]
516	then
517	do_batch=true
518	do_remote=true
519	case $host in
520	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
521	(*) printf "\n"
522	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
523	printf "\n is not available"
524	locat=nqs; (( iec = 0 )); exit;;
525	esac
526	else
527	host=$localhost
528	fi
529
530
531	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
532	if [[ -n $additional_conditions ]]
533	then
534	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
535	cond1=`echo $additional_conditions \| cut -d" " -f1`
536	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
537	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
538	if [[ -n $dummy ]]
539	then
540	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
541	locat=options; exit
542	fi
543	block=_$cond1
544	[[ -n $cond2 ]] && block=${block}_$cond2
545	fi
546
547
548	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
549	if [[ $run_coupled_model = true ]]
550	then
551
552	if [[ -n $coupled_dist ]]
553	then
554
555	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
556	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
557
558	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
559	then
560
561	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
562	printf "\n PEs (total) : $numprocs"
563	printf "\n PEs (atmosphere): $numprocs_atmos"
564	printf "\n PEs (ocean) : $numprocs_ocean"
565	locat=coupling; exit
566
567	fi
568
569	else
570
571	(( numprocs_ocean = $numprocs / 2 ))
572	(( numprocs_atmos = $numprocs / 2 ))
573
574	fi
575	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
576
577	# GET coupled_mode FROM THE CONFIG FILE
578	line=""
579	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
580	while read line
581	do
582	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
583	then
584	coupled_mode="mpi2"
585	fi
586	done < tmp_mrun
587
588	fi
589
590
591	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
592	# ARCHIVIERUNG FEHLGESCHLAGEN IST
593	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
594	then
595	if [[ $ignore_archive_error = false ]]
596	then
597	printf "\n +++ data archiving of previous run failed"
598	printf "\n see directory \~/job_queue on remote machine"
599	locat=archive; exit
600	else
601	printf "\n +++ warning: data archiving in a previous run failed"
602	printf "\n MRUN continues, trying to get backup copy"
603	fi
604	fi
605
606
607	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
608	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
609	mrun_memory=$memory
610	mrun_group_number=$group_number
611	mrun_cpumax=$cpumax
612	mrun_numprocs=$numprocs
613
614
615	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
616	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
617	if [[ "$read_from_config" = false ]]
618	then
619
620	[[ $silent = false ]] && printf "\n Reading the configuration file... "
621	while read zeile
622	do
623	[[ $silent = false ]] && printf "."
624
625
626	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
627	# ERSETZEN
628	eval zeile=\"$zeile\"
629
630
631	# INTERPRETATION DER ZEILE
632	if [[ "$(echo $zeile)" = "" ]]
633	then
634	# LEERZEILE, KEINE AKTION
635	continue
636
637	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
638	then
639
640	# ZEILE IST KOMMENTARZEILE
641	true
642
643	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
644	then
645
646	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
647	zeile=$(echo $zeile \| cut -c2-)
648	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
649	var=`echo $zeile \| cut -d" " -f1`
650	value=`echo $zeile \| cut -d" " -s -f2`
651	for_host=`echo $zeile \| cut -d" " -s -f3`
652	for_cond1=`echo $zeile \| cut -d" " -s -f4`
653	for_cond2=`echo $zeile \| cut -d" " -s -f5`
654
655	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
656	then
657
658	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
659	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
660	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
661
662
663	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
664	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
665	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
666	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
667	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
668	# KONFIGURATIONSDATEI
669	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
670	then
671	eval $var=\$value
672
673	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
674	if [[ $do_trace = true ]]
675	then
676	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
677	fi
678	fi
679
680	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
681	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
682	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
683	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
684	if [[ $var = host ]]
685	then
686	if [[ -n $host && "$host" != $localhost ]]
687	then
688	do_batch=true
689	do_remote=true
690	case $host in
691	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
692	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
693	printf "\n is not available"
694	locat=nqs; exit;;
695	esac
696	else
697	host=$localhost
698	fi
699	fi
700
701	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
702	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
703	# DEN PROGRAMMEN BENOETIGT WERDEN
704	export $var
705	fi
706
707
708
709
710	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
711	then
712
713	# ZEILE DEFINIERT ERROR-KOMMANDO
714	(( iec = iec + 1 ))
715	zeile=$(echo $zeile \| cut -c4-)
716	err_command[$iec]="$zeile"
717
718	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
719	then
720
721	# ZEILE DEFINIERT INPUT-KOMMANDO
722	(( iic = iic + 1 ))
723	zeile=$(echo $zeile \| cut -c4-)
724	in_command[$iic]="$zeile"
725
726	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
727	then
728
729	# ZEILE DEFINIERT OUTPUT-KOMMANDO
730	(( ioc = ioc + 1 ))
731	zeile=$(echo $zeile \| cut -c4-)
732	out_command[$ioc]="$zeile"
733
734	else
735
736	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
737	# s2a: in/out - Feld
738	# s2b: loc - Feld (optional)
739	# s2c: tr/ar - Feld (optional)
740	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
741	s1=`echo $zeile \| cut -d" " -f1`
742	s2=`echo $zeile \| cut -d" " -s -f2`
743	s2a=$(echo $s2 \| cut -d":" -f1)
744	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
745	then
746	s2b=""
747	s2c=""
748	else
749	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
750	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
751	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
752	fi
753	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
754	s3=`echo $zeile \| cut -d" " -f3`
755	s4=`echo $zeile \| cut -d" " -s -f4`
756	s5=`echo $zeile \| cut -d" " -s -f5`
757	s6=`echo $zeile \| cut -d" " -s -f6`
758
759
760	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
761	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
762	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
763	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
764	# HANDEN SEIN MUSS (D.H. s2b = loc)
765	IFSALT="$IFS"; IFS="$IFS:"
766	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
767	then
768	found=false
769	for actual in $input_list
770	do
771	for formal in $s3
772	do
773	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
774	done
775	done
776	if [[ $found = true ]]
777	then
778	(( iin = iin + 1 ))
779	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
780	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
781	extin[$iin]=$s6
782	fi
783	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
784	then
785	found=false
786	for actual in $output_list
787	do
788	for formal in $s3
789	do
790	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
791	done
792	done
793	if [[ $found = true ]]
794	then
795	(( iout = iout + 1 ))
796	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
797	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
798	fi
799	elif [[ "$s2a" != in && "$s2a" != out ]]
800	then
801	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
802	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
803	locat=connect; exit
804	fi
805	IFS="$IFSALT"
806	fi
807	done < $config_file
808
809	else
810
811
812	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
813	[[ $silent = false ]] && printf "..."
814	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
815	export interpreted_config_file=.icf.$RANDOM
816
817
818
819	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
820	# VERFUEGUNG STELLEN
821	cat > .mrun_environment << %%END%%
822	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
823	config_file = '$config_file', do_remote = '$do_remote',
824	do_trace = '$do_trace', host = '$host',
825	input_list = '$input_list', icf = '$interpreted_config_file',
826	localhost = '$localhost', output_list = '$output_list' /
827
828	%%END%%
829
830	if [[ $localhost_realname = "sx-fep" ]]
831	then
832	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
833	else
834
835	if [[ "$host" != $localhost ]]
836	then
837
838	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
839	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
840	if [[ $? != 0 ]]
841	then
842	printf "\n\n +++ no interpret_config found"
843	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
844	locat=interpret_config; exit
845	fi
846	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
847	$interpret_config_executable
848
849	else
850
851	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
852	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
853	then
854	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
855	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
856	locat=interpret_config; exit
857	else
858	interpret_config${block}.x
859	fi
860
861	fi
862	fi
863	rm .mrun_environment
864
865
866	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
867	chmod u+x $interpreted_config_file
868	export PATH=$PATH:.
869	. $interpreted_config_file
870	rm $interpreted_config_file
871
872	fi
873
874
875	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
876	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
877	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
878	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
879	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
880	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
881	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
882
883
884	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
885	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
886	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
887	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
888	if [[ "$SOURCES_COMPLETE" = "" ]]
889	then
890
891	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
892	# VEREINBART WURDE
893	source_path=""
894	line=""
895	grep "%source_path" $config_file > tmp_mrun
896	while read line
897	do
898	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
899	then
900	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
901	then
902	global_source_path=`echo $line \| cut -d" " -f2`
903	fi
904	fi
905	done < tmp_mrun
906
907	line=""
908	found=false
909	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
910	while read line
911	do
912	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
913	then
914	if [[ $found = true ]]
915	then
916	printf "\n\n +++ more than one source path found in configuration file"
917	printf "\n for local host \"$localhost\" "
918	locat=source_path; exit
919	fi
920	source_path=`echo $line \| cut -d" " -f2`
921	found=true
922	fi
923	done < tmp_mrun
924	rm tmp_mrun
925
926	if [[ "$source_path" = "" ]]
927	then
928	if [[ "$global_source_path" != "" ]]
929	then
930	source_path=$global_source_path
931	else
932	printf "\n\n +++ no source path found in configuration file"
933	printf "\n for local host \"$localhost\" "
934	locat=source_path; exit
935	fi
936	fi
937	eval source_path=$source_path
938
939	if [[ ! -d $source_path ]]
940	then
941	printf "\n\n +++ source path \"$source_path\" on local host"
942	printf "\n \"$localhost\" does not exist"
943	locat=source_path; exit
944	fi
945
946	fi
947
948
949	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
950	# DURCH OPTION -G MITGETEILT)
951	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
952	then
953	global_revision=`svnversion $source_path 2>/dev/null`
954	global_revision="Rev: $global_revision"
955	fi
956
957
958	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
959	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
960	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
961	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
962	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
963	if [[ -n $host && "$host" != $localhost ]]
964	then
965	do_batch=true
966	do_remote=true
967	case $host in
968	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
969	(*) printf "\n"
970	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
971	printf "\n is not available"
972	locat=nqs; (( iec = 0 )); exit;;
973	esac
974	else
975	host=$localhost
976	fi
977
978
979	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
980	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
981	then
982
983	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
984	if [[ ! -n $numprocs ]]
985	then
986	printf "\n"
987	printf "\n +++ option \"-K parallel\" requires additional specification"
988	printf "\n of the number of processors to be used by"
989	printf "\n mrun-option \"-X\" or by environment-variable"
990	printf "\n \"numprocs\" in the configuration file"
991	locat=numprocs; (( iec = 0 )); exit
992	fi
993
994	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
995	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
996	# GESAMTPROZESSORANZAHL IST
997	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
998	then
999	printf "\n"
1000	printf "\n +++ option \"-T\" (tasks per node) is missing"
1001	printf "\n set -T option or define tasks_per_node in the config file"
1002	locat=tasks_per_node; (( iec = 0 )); exit
1003	fi
1004	if [[ $host != lcflow && $host != lcxt5m ]]
1005	then
1006	(( ival = $tasks_per_node ))
1007	(( pes = numprocs ))
1008	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1009	# then
1010	# (( pes = pes - 1 ))
1011	# fi
1012	(( ii = pes / ival ))
1013	if (( pes - ii * ival > 0 ))
1014	then
1015	printf "\n"
1016	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1017	printf "\n divisor of the total number of processors (option \"-X\")"
1018	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1019	locat=tasks_per_node; (( iec = 0 )); exit
1020	fi
1021	fi
1022
1023
1024	# IBMY HAT NUR EINEN KNOTEN
1025	if [[ $host = ibmy ]]
1026	then
1027	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1028	then
1029	printf "\n"
1030	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1031	printf "\n total number of processors (option \"-X\")"
1032	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1033	locat=tasks_per_node; (( iec = 0 )); exit
1034	fi
1035	fi
1036
1037
1038	# SETTINGS FOR SUBJOB-COMMAND
1039	TOPT="-T $tasks_per_node"
1040	OOPT="-O $threads_per_task"
1041
1042	# GESAMTZAHL DER KNOTEN BESTIMMEN
1043	if [[ "$tasks_per_node" != "" ]]
1044	then
1045	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1046	fi
1047
1048	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1049	# SETZEN
1050	if [[ $node_usage = default ]]
1051	then
1052	if [[ $host = ibms ]]
1053	then
1054	node_usage=shared
1055	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1056	then
1057	node_usage=singlejob
1058	else
1059	node_usage=not_shared
1060	fi
1061	fi
1062
1063	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1064	then
1065	printf "\n"
1066	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1067	printf "\n \"shared\" or \"not_shared\""
1068	locat=tasks_per_node; (( iec = 0 )); exit
1069	fi
1070
1071	fi
1072
1073	# PRUEFEN, OB HOSTFILE EXISTIERT
1074	if [[ -n $hostfile ]]
1075	then
1076	if [[ ! -f $hostfile ]]
1077	then
1078	printf "\n"
1079	printf "\n +++ hostfile \"$hostfile\" does not exist"
1080	locat=hostfile; exit
1081	fi
1082	fi
1083
1084	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1085	if [[ $host = ibmy && $do_remote = false ]]
1086	then
1087	if [[ ! -f $HOME/.rhosts ]]
1088	then
1089	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1090	printf "\n\n *** file:"
1091	printf "\n $HOME/.rhosts"
1092	printf "\n was created\n"
1093	fi
1094	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1095	then
1096	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1097	printf "\n\n *** file:"
1098	printf "\n $HOME/.rhosts"
1099	printf "\n was extended by the name of the current host\n"
1100	fi
1101	fi
1102
1103
1104	# Set default value for the maximum number of parallel io streams
1105	if [[ "$maximum_parallel_io_streams" = "" ]]
1106	then
1107	maximum_parallel_io_streams=$numprocs
1108	fi
1109
1110
1111	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1112	if [[ "$scp_port" != "" ]]
1113	then
1114	PORTOPT="-P $scp_port"
1115	SSH_PORTOPT="-p $scp_port"
1116	fi
1117
1118
1119	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1120	if [[ $queue = none ]]
1121	then
1122	case $host in
1123	(ibmh) queue=no_class;;
1124	(ibmkisti) queue=class.32plus;;
1125	(ibmy) queue=parallel;;
1126	(lckiaps) queue=normal;;
1127	(lckyoto) queue=ph;;
1128	(lckyuh) queue=fx-single;;
1129	(lckyut) queue=cx-single;;
1130	(lcsgib) queue=testq;;
1131	(lcsgih) queue=testq;;
1132	(lctit) queue=S;;
1133	(nech) queue=none;;
1134	(necriam) queue=SP;;
1135	(unics) queue=unics;;
1136	esac
1137	fi
1138
1139
1140	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1141	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1142	# ERMITTELN
1143	(( i = 0 ))
1144	while (( i < iin ))
1145	do
1146	(( i = i + 1 ))
1147	(( maxcycle = 0 ))
1148
1149	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1150	if [[ "${actionin[$i]}" = di ]]
1151	then
1152	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1153	# REM-MASCHINE AUSWERTEN
1154	eval filename=${pathin[$i]}/${endin[$i]}
1155	else
1156	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1157	# REM-MASCHINE AUSWERTEN
1158	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1159	fi
1160	eval pathname=${pathin[$i]}
1161
1162	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1163	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1164	then
1165	filename_input=$filename
1166	fi
1167
1168	# PRUEFEN AUF VORHANDENSEIN
1169	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1170	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1171	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1172	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1173	then
1174	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1175	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1176	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1177	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1178	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1179	if [[ "${transin[$i]}" != "locopt" ]]
1180	then
1181	printf "\n\n +++ INPUT-file: "
1182	if [[ "${extin[$i]}" = "" ]]
1183	then
1184	printf "\n $filename"
1185	else
1186	printf "\n $filename.${extin[$i]}"
1187	fi
1188	printf "\n does not exist\n"
1189	locat=input; exit
1190	else
1191	transin[$i]="unavailable"
1192	fi
1193	else
1194
1195	# ZYKLUSNUMMER FESTSTELLEN
1196	ls -1 -d $filename > filelist 2>/dev/null
1197	ls -1 -d $filename.* >> filelist 2>/dev/null
1198	while read zeile
1199	do
1200	cycle=$(echo $zeile \| cut -f2 -d".")
1201	if [[ "$cycle" = "$zeile" ]]
1202	then
1203	(( icycle = 0 ))
1204	elif [[ "$cycle" = "${extin[$i]}" ]]
1205	then
1206	(( icycle = 0 ))
1207	else
1208	(( icycle = $cycle ))
1209	fi
1210	if (( icycle > maxcycle ))
1211	then
1212	(( maxcycle = icycle ))
1213	file_to_be_used=$zeile
1214	fi
1215	done <filelist
1216	rm filelist
1217
1218	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1219	if (( maxcycle > 0 ))
1220	then
1221	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1222	then
1223	filename=${filename}.$maxcycle.${extin[$i]}
1224	else
1225	filename=${filename}.$maxcycle
1226	fi
1227	else
1228	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1229	then
1230	filename=${filename}.${extin[$i]}
1231	fi
1232	fi
1233
1234	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1235	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1236	absnamein[$i]=$filename
1237	if (( maxcycle > 0 ))
1238	then
1239	if [[ "${actionin[$i]}" = di ]]
1240	then
1241	frelin[$i]=${endin[$i]}.$maxcycle
1242	else
1243	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1244	fi
1245	else
1246	if [[ "${actionin[$i]}" = di ]]
1247	then
1248	frelin[$i]=${endin[$i]}
1249	else
1250	frelin[$i]=${afname}${endin[$i]}
1251	fi
1252	fi
1253
1254	fi
1255	done
1256
1257	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1258	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1259	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1260	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1261	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1262	(( i = 0 ))
1263	while (( i < iout ))
1264	do
1265	(( i = i + 1 ))
1266	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1267	then
1268	if [[ "${actionout[$i]}" = tr ]]
1269	then
1270	actionout[$i]=""
1271	elif [[ "${actionout[$i]}" = trpe ]]
1272	then
1273	actionout[$i]=pe
1274	elif [[ "${actionout[$i]}" = tra ]]
1275	then
1276	actionout[$i]=a
1277	fi
1278	(( maxcycle = 0 ))
1279	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1280	eval catalogname=${pathout[$i]}
1281	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1282	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1283	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1284	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1285	then
1286
1287	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1288	if cat /dev/null > $filename
1289	then
1290	rm $filename
1291	else
1292
1293	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1294	if [[ ! -d $catalogname ]]
1295	then
1296	if mkdir -p $catalogname
1297	then
1298	printf "\n\n *** directory:"
1299	printf "\n $catalogname"
1300	printf "\n was created\n"
1301	else
1302	printf "\n\n +++ OUTPUT-file:"
1303	printf "\n $filename"
1304	printf "\n cannot be created, because directory does not exist"
1305	printf "\n and cannot be created either"
1306	printf "\n"
1307	locat=output ; exit
1308	fi 2>/dev/null
1309	else
1310	printf "\n\n +++ OUTPUT-file:"
1311	printf "\n $filename"
1312	printf "\n cannot be created, although directory exists"
1313	printf "\n"
1314	locat=output ; exit
1315	fi
1316	fi 2>/dev/null
1317	else
1318
1319	# ZYKLUSNUMMER FESTSTELLEN
1320	ls -1 -d $filename > filelist 2>/dev/null
1321	ls -1 -d $filename.* >> filelist 2>/dev/null
1322	while read zeile
1323	do
1324	cycle=$(echo $zeile \| cut -f2 -d".")
1325	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1326	then
1327	(( icycle = 1 ))
1328	else
1329	(( icycle = $cycle + 1 ))
1330	fi
1331	if (( icycle > maxcycle ))
1332	then
1333	(( maxcycle = icycle ))
1334	fi
1335	done <filelist
1336	rm filelist
1337	fi
1338
1339	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1340	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1341	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1342	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1343	if [[ "${actionout[$i]}" != a ]]
1344	then
1345	if (( maxcycle > 0 ))
1346	then
1347	filename=${filename}.$maxcycle
1348	if cat /dev/null > $filename
1349	then
1350	rm $filename
1351	else
1352	printf "\n +++ OUTPUT-file:"
1353	printf "\n $filename"
1354	printf "\n cannot be created"
1355	locat=output ; exit
1356	fi
1357	fi
1358	else
1359	(( maxcycle = maxcycle - 1 ))
1360	if (( maxcycle > 0 ))
1361	then
1362	filename=${filename}.$maxcycle
1363	fi
1364	fi
1365
1366	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1367	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1368	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1369	pathout[$i]=$filename
1370	if (( maxcycle > 0 ))
1371	then
1372	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1373	else
1374	frelout[$i]=${fname}${endout[$i]}
1375	fi
1376
1377	fi
1378	done
1379
1380
1381	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1382	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1383	then
1384	if [[ "$dvr_inc" = "" ]]
1385	then
1386	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1387	printf "\n This is required for the dvrp_graphics package.\n"
1388	locat=dvr; exit
1389	fi
1390	if [[ "$dvr_lib" = "" ]]
1391	then
1392	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1393	printf "\n This is required for the dvrp_graphics package.\n"
1394	locat=dvr; exit
1395	fi
1396	fi
1397
1398
1399	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1400	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1401	# UEBERSETZT ZU WERDEN)
1402	if [[ "$mainprog" = "" && "$executable" = "" ]]
1403	then
1404	printf "\n +++ neither main program nor executable defined"
1405	locat=source; exit
1406	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1407	then
1408	printf "\n +++ main program as well as executable defined"
1409	locat=source; exit
1410	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1411	then
1412	do_compile=false
1413	fi
1414
1415
1416	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1417	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1418	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1419	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1420	then
1421	rm -rf SOURCES_FOR_RUN_$fname
1422	mkdir SOURCES_FOR_RUN_$fname
1423	fi
1424
1425
1426	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1427	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1428	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1429	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1430	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1431	then
1432
1433	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1434
1435	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1436	then
1437
1438	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1439	source_list=""
1440	cd $source_path
1441
1442
1443	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1444	if [[ ! -d .svn ]]
1445	then
1446	printf "\n\n +++ source directory"
1447	printf "\n \"$source_path\" "
1448	printf "\n is not under control of \"subversion\"."
1449	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1450	fi
1451
1452
1453	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1454	Filenames=""
1455	svn status > tmp_mrun
1456	while read line
1457	do
1458	firstc=`echo $line \| cut -c1`
1459	if [[ $firstc = M \|\| $firstc = "?" ]]
1460	then
1461	Name=`echo "$line" \| cut -c8-`
1462	extension=`echo $Name \| cut -d. -f2`
1463	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1464	then
1465	Filenames="$Filenames "$Name
1466	fi
1467	fi
1468	done < tmp_mrun
1469
1470
1471	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1472	for dateiname in $Filenames
1473	do
1474	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1475	source_list=$source_list"$dateiname "
1476	done
1477
1478	cd - > /dev/null
1479
1480
1481	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1482	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1483	# VORHANDEN
1484	elif [[ "$source_list" != "" && $restart_run != true ]]
1485	then
1486
1487	cd $source_path
1488
1489	for filename in $source_list
1490	do
1491
1492	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1493	if [[ $(print $filename \| grep -c "/") != 0 ]]
1494	then
1495	printf "\n +++ source code file: $filename"
1496	printf "\n must not contain (\"/\") "
1497	locat=source; exit
1498	fi
1499
1500	if [[ ! -f $filename ]]
1501	then
1502	printf "\n +++ source code file: $filename"
1503	printf "\n does not exist"
1504	locat=source; exit
1505	else
1506	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1507	fi
1508
1509	done
1510
1511	cd - > /dev/null
1512
1513	fi
1514
1515
1516	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1517	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1518	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1519	if [[ $restart_run != true ]]
1520	then
1521
1522	if [[ ! -f "$source_path/$mainprog" ]]
1523	then
1524	printf "\n\n +++ main program: $mainprog"
1525	printf "\n does not exist in source directory"
1526	printf "\n \"$source_path\"\n"
1527	locat=source; exit
1528	else
1529	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1530	then
1531	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1532	source_list=${mainprog}" $source_list"
1533	fi
1534	fi
1535	fi
1536
1537
1538	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1539	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1540	if [[ "$restart_run" != true ]]
1541	then
1542	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1543	if [[ ! -f $makefile ]]
1544	then
1545	printf "\n +++ file \"$makefile\" does not exist"
1546	locat=make; exit
1547	else
1548	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1549	fi
1550	fi
1551
1552
1553	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1554	if [[ $restart_run != true && "$add_source_path" != "" ]]
1555	then
1556
1557	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1558	if [[ ! -d $add_source_path ]]
1559	then
1560	printf "\n\n +++ WARNING: additional source code directory"
1561	printf "\n \"$add_source_path\" "
1562	printf "\n does not exist or is not a directory."
1563	printf "\n No source code will be used from this directory!\n"
1564	add_source_path=""
1565	if [[ $silent == false ]]
1566	then
1567	sleep 3
1568	fi
1569	else
1570
1571	cd $add_source_path
1572	found=false
1573
1574	Names=$(ls -1 *.f90 2>&1)
1575	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1576	Names=$(ls -1 *.F90 2>&1)
1577	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1578	Names=$(ls -1 *.F 2>&1)
1579	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1580	Names=$(ls -1 *.f 2>&1)
1581	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1582	Names=$(ls -1 *.c 2>&1)
1583	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1584
1585	cd - > /dev/null
1586	cd SOURCES_FOR_RUN_$fname
1587
1588	# COPY MAKEFILE IF EXISTING
1589	if [[ -f $add_source_path/Makefile ]]
1590	then
1591	printf "\n\n *** user Makefile from directory"
1592	printf "\n \"$add_source_path\" is used \n"
1593	if [[ $silent == false ]]
1594	then
1595	sleep 1
1596	fi
1597	cp $add_source_path/Makefile .
1598	fi
1599
1600	for dateiname in $AddFilenames
1601	do
1602	if [[ -f $dateiname ]]
1603	then
1604	printf "\n +++ source code file \"$dateiname\" found in additional"
1605	printf "\n source code directory \"$add_source_path\" "
1606	printf "\n but was also given with option \"-s\" which means that it should be taken"
1607	printf "\n from directory \"$source_path\"."
1608	locat=source; exit
1609	fi
1610
1611	cp $add_source_path/$dateiname .
1612	source_list="$source_list $dateiname"
1613
1614	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1615	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1616	then
1617	printf "\n\n +++ user file \"$dateiname\" "
1618	printf "\n is not listed in Makefile \n"
1619	locat=source; exit
1620	else
1621
1622	# Default User-Interface von der Liste entfernen, falls Datei
1623	# ein User-Interface enthaelt
1624	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1625	# then
1626	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1627	# then
1628	# rm -rf user_interface.f90
1629	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1630	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1631	# printf "\n since a user-interface is found in file"
1632	# printf "\n \"$add_source_path/$dateiname\" \n"
1633	# sleep 3
1634	# else
1635	if [[ $found = false ]]
1636	then
1637	found=true
1638	printf "\n\n *** following user file(s) added to the"
1639	printf " files to be translated:\n "
1640	fi
1641	printf "$dateiname "
1642	if [[ $silent == false ]]
1643	then
1644	sleep 0.5
1645	fi
1646
1647	fi
1648	done
1649	[[ $found = true ]] && printf "\n"
1650	cd - > /dev/null
1651	fi
1652	fi
1653
1654
1655	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1656	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1657	if [[ $restart_run != true && -n $package_list ]]
1658	then
1659
1660	cd $source_path
1661
1662	for package in $package_list
1663	do
1664
1665	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1666
1667	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1668	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1669	# LIEFERT
1670	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1671
1672
1673	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1674	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1675	for source_list_name in $package_source_list
1676	do
1677	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1678	then
1679
1680	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1681	ending=`echo $source_list_name \| cut -f2 -d.`
1682	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1683	then
1684	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1685	source_list="$source_list $source_list_name"
1686	fi
1687	fi
1688	done
1689	done
1690
1691	cd - > /dev/null
1692	fi
1693
1694
1695	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1696	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1697	# if [[ "$restart_run" != true ]]
1698	# then
1699	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1700	# if [[ ! -f $makefile ]]
1701	# then
1702	# printf "\n +++ file \"$makefile\" does not exist"
1703	# locat=make; exit
1704	# else
1705	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1706	# fi
1707	# fi
1708
1709	fi # do_compile=true
1710
1711
1712	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1713	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1714	if [[ $do_compile = true ]]
1715	then
1716
1717	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1718	# ZUSAMMENSETZEN
1719	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1720	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1721	then
1722	cpp_options="${cpp_options},-D__ibm=__ibm"
1723	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1724	then
1725	cpp_options="$cpp_options -D__nec"
1726	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1727	then
1728	cpp_options="$cpp_options -D__lc"
1729	else
1730	cpp_options="$cpp_options -D__$localhost"
1731	fi
1732
1733	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1734	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1735	then
1736	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1737	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1738	else
1739	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1740	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1741	fi
1742
1743	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1744	if [[ -n $package_list ]]
1745	then
1746	for package in $package_list
1747	do
1748	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1749	then
1750	if [[ $package != "dvrp_graphics+1PE" ]]
1751	then
1752	cpp_options="${cpp_options},-D__$package=__$package"
1753	else
1754	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1755	export use_seperate_pe_for_dvrp_output=true
1756	fi
1757	else
1758	if [[ $package != "dvrp_graphics+1PE" ]]
1759	then
1760	cpp_options="$cpp_options -D__$package"
1761	else
1762	cpp_options="$cpp_options -D__dvrp_graphics"
1763	export use_seperate_pe_for_dvrp_output=true
1764	fi
1765	fi
1766	done
1767	fi
1768
1769	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1770	if [[ -n $cpp_opts ]]
1771	then
1772	for popts in $cpp_opts
1773	do
1774	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1775	then
1776	cpp_options="${cpp_options},-D__$popts=__$popts"
1777	else
1778	cpp_options="$cpp_options -D__$popts"
1779	fi
1780	done
1781	fi
1782
1783	else
1784
1785
1786	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1787	if [[ $do_remote = false ]]
1788	then
1789	if [[ ! -f $executable ]]
1790	then
1791	printf "\n +++ executable file: $executable"
1792	printf "\n does not exist"
1793	locat=executable; exit
1794	fi
1795	fi
1796	fi
1797
1798
1799	# JOBMODUS FESTSTELLEN
1800	if [[ "$ENVIRONMENT" = BATCH ]]
1801	then
1802	jobmo=BATCH
1803	else
1804	jobmo=INTERACTIVE
1805	fi
1806
1807
1808	# no interactive runs on lctit
1809	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1810	then
1811	printf "\n +++ no interactive runs allowed on host \"$host\" "
1812	printf "\n please submit batch job using mrun option \"-b\" \n"
1813	locat=normal; exit
1814	fi
1815
1816
1817	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1818	# DURCH BENUTZER ANDERWEITIG VEREINBART
1819	if [[ "$compiler_name" = "" ]]
1820	then
1821
1822	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1823	locat=compiler_name; exit
1824
1825	fi
1826
1827
1828	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1829	[[ $localhost = necriam ]] && compiler_name=mpif90
1830
1831
1832
1833	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1834	kennung=$RANDOM
1835	if [[ "$tmp_user_catalog" = "" ]]
1836	then
1837	if [[ $localhost = ibmh ]]
1838	then
1839	tmp_user_catalog=$SCRATCH
1840	elif [[ $localhost = nech ]]
1841	then
1842	tmp_user_catalog=$WRKSHR
1843	else
1844	tmp_user_catalog=/tmp
1845	fi
1846	fi
1847	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1848
1849
1850	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1851	# BESTIMMEN
1852	if [[ "$tmp_data_catalog" = "" ]]
1853	then
1854	if [[ $localhost = nech ]]
1855	then
1856	tmp_data_catalog=$WRKSHR/mrun_restart_data
1857	else
1858	tmp_data_catalog=/tmp/mrun_restart_data
1859	fi
1860	fi
1861
1862
1863	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1864	# ERSETZEN
1865	if [[ $do_remote = false && $do_compile = true ]]
1866	then
1867	eval fopts=\"$fopts\"
1868	eval lopts=\"$lopts\"
1869	fi
1870
1871
1872
1873	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1874	fopts="$fopts $netcdf_inc $dvr_inc"
1875	lopts="$lopts $netcdf_lib $dvr_lib"
1876	ROPTS="$ropts"
1877	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1878	# then
1879	XOPT="-X $numprocs"
1880	# fi
1881
1882
1883
1884	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1885	# GRAMM BENOETIGT
1886	done=false
1887	while [[ $done = false ]]
1888	do
1889	cputime=$cpumax
1890	if (( $cputime == 0 ))
1891	then
1892	if [[ $do_batch = true ]]
1893	then
1894	printf "\n +++ cpu-time is undefined"
1895	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1896	printf "\n >>> "
1897	read cputime 1>/dev/null 2>&1
1898	else
1899	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1900	fi
1901	else
1902	done=true
1903	fi
1904	cpumax=$cputime
1905	done
1906
1907	(( minuten = cputime / 60 ))
1908	(( sekunden = cputime - minuten * 60 ))
1909
1910
1911	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1912	if [[ $do_batch = true ]]
1913	then
1914	done=false
1915	while [[ $done = false ]]
1916	do
1917	if (( memory == 0 ))
1918	then
1919	printf "\n +++ memory demand is undefined"
1920	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1921	printf "\n >>> "
1922	read memory 1>/dev/null 2>&1
1923	else
1924	done=true
1925	fi
1926	done
1927	fi
1928
1929
1930	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1931	if [[ $do_remote = true && -z $remote_username ]]
1932	then
1933	while [[ -z $remote_username ]]
1934	do
1935	printf "\n +++ username on remote host \"$host\" is undefined"
1936	printf "\n >>> Please type username:"
1937	printf "\n >>> "
1938	read remote_username
1939	done
1940	mc="$mc -u$remote_username"
1941	fi
1942
1943	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1944	if [[ "$login_init_cmd" != "" ]]
1945	then
1946	export init_cmds="${login_init_cmd};"
1947	fi
1948
1949
1950	# set module load command and export for subjob
1951	if [[ "$modules" != "" ]]
1952	then
1953	if [[ $host = lctit ]]
1954	then
1955	export module_calls=". $modules"
1956	else
1957	export module_calls="module load ${modules};"
1958	fi
1959	fi
1960
1961	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1962	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1963	then
1964	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1965	then
1966	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1967	fi
1968	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1969	# then
1970	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1971	# echo "*** module_calls = $module_calls"
1972	# fi
1973	fi
1974
1975
1976	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1977	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1978	then
1979	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1980	then
1981	mpilib=mpt
1982	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1983	then
1984	mpilib=mvapich
1985	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1986	then
1987	mpilib=impi
1988	fi
1989	fi
1990
1991
1992
1993	###########################################################################
1994	# HEADER-AUSGABE
1995	###########################################################################
1996
1997
1998	calltime=$(date)
1999	printf "\n"
2000	# [[ $silent = false ]] && clear
2001	printf "#------------------------------------------------------------------------# \n"
2002	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2003	printf "\| \| \n"
2004	spalte1="called on:"; spalte2=$localhost_realname
2005	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2006	if [[ $local_compile = false ]]
2007	then
2008	if [[ $do_remote = true ]]
2009	then
2010	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2011	else
2012	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2013	fi
2014	else
2015	spalte1="compiling test only!"; spalte2=""
2016	fi
2017	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2018	if [[ -n $numprocs ]]
2019	then
2020	spalte1="number of PEs:"; spalte2=$numprocs
2021	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2022	fi
2023	if [[ -n $tasks_per_node ]]
2024	then
2025	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2026	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2027	fi
2028	if [[ $maximum_parallel_io_streams != $numprocs ]]
2029	then
2030	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2031	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2032	fi
2033	if [[ $use_openmp = true ]]
2034	then
2035	spalte1="threads per task:"; spalte2="$threads_per_task"
2036	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2037	fi
2038	printf "\| \| \n"
2039	if [[ $do_compile = true ]]
2040	then
2041	if [[ "$mopts" != "" ]]
2042	then
2043	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2044	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2045	zeile=$(echo "$mopts" \| cut -c46-)
2046	while [[ "$zeile" != "" ]]
2047	do
2048	spalte1=""
2049	spalte2=$(echo "$zeile" \| cut -c-45)
2050	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2051	zeile=$(echo "$zeile" \| cut -c46-)
2052	done
2053	fi
2054
2055	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2056	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2057	zeile=$(echo "$cpp_options" \| cut -c46-)
2058	while [[ "$zeile" != "" ]]
2059	do
2060	spalte1=""
2061	spalte2=$(echo "$zeile" \| cut -c-45)
2062	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2063	zeile=$(echo "$zeile" \| cut -c46-)
2064	done
2065
2066	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2067	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2068	zeile=$(echo "$fopts" \| cut -c46-)
2069	while [[ "$zeile" != "" ]]
2070	do
2071	spalte1=""
2072	spalte2=$(echo "$zeile" \| cut -c-45)
2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2074	zeile=$(echo "$zeile" \| cut -c46-)
2075	done
2076
2077	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2078	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2079	zeile=$(echo "$lopts" \| cut -c46-)
2080	while [[ "$zeile" != "" ]]
2081	do
2082	spalte1=""
2083	spalte2=$(echo "$zeile" \| cut -c-45)
2084	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2085	zeile=$(echo "$zeile" \| cut -c46-)
2086	done
2087
2088	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2089	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2090	zeile=$(echo "$modules" \| cut -c46-)
2091	while [[ "$zeile" != "" ]]
2092	do
2093	spalte1=""
2094	spalte2=$(echo "$zeile" \| cut -c-45)
2095	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2096	zeile=$(echo "$zeile" \| cut -c46-)
2097	done
2098
2099	spalte1="main program:"; spalte2=$mainprog
2100	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2101	else
2102	spalte1=executable:; spalte2=$executable
2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2104	fi
2105	printf "\| \| \n"
2106	spalte1="base name of files:"; spalte2=$fname
2107	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2108	if [[ $fname != $afname ]]
2109	then
2110	spalte1="base name of input files:"; spalte2=$afname
2111	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2112	fi
2113	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2114	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2115	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2116	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2117
2118	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2119	then
2120	spalte1="memory demand / PE":; spalte2="$memory MB"
2121	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2122	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2123	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2124	fi
2125
2126	if [[ $do_compile = true ]]
2127	then
2128	printf "\| \| \n"
2129	printf "\| Files to be compiled: \| \n"
2130	zeile=$source_list
2131	while [[ "$zeile" != "" ]]
2132	do
2133	linestart=$(echo $zeile \| cut -c-70)
2134	printf "\| %-70s \| \n" "$linestart"
2135	zeile=$(echo "$zeile" \| cut -c71-)
2136	done
2137	fi
2138	printf "#------------------------------------------------------------------------#"
2139
2140
2141
2142	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2143	if [[ $do_trace = true ]]
2144	then
2145	(( i = 0 ))
2146	while (( i < iin ))
2147	do
2148	(( i = i + 1 ))
2149	if (( i == 1 ))
2150	then
2151	printf "\n\n >>> INPUT-file assignments:\n"
2152	fi
2153	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2154	done
2155	(( i = 0 ))
2156	while (( i < iout ))
2157	do
2158	(( i = i + 1 ))
2159	if (( i == 1 ))
2160	then
2161	printf "\n\n >>> OUTPUT-file assignments:\n"
2162	fi
2163	printf "\n ${localout[$i]} : ${pathout[$i]}"
2164	done
2165	(( i = 0 ))
2166	while (( i < iic ))
2167	do
2168	(( i = i + 1 ))
2169	if (( i == 1 ))
2170	then
2171	printf "\n\n >>> INPUT-commands:\n"
2172	fi
2173	printf "\n ${in_command[$i]}"
2174	done
2175	(( i = 0 ))
2176	while (( i < ioc ))
2177	do
2178	(( i = i + 1 ))
2179	if (( i == 1 ))
2180	then
2181	printf "\n\n >>> OUTPUT-commands:\n"
2182	fi
2183	printf "\n ${out_command[$i]}"
2184	done
2185	fi
2186
2187
2188	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2189	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2190	then
2191	antwort=dummy
2192	printf "\n\n"
2193	printf " >>> everything o.k. (y/n) ? "
2194	while read antwort
2195	do
2196	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2197	then
2198	printf " >>> everything o.k. (y/n) ? "
2199	else
2200	break
2201	fi
2202	done
2203	if [[ $antwort = n \|\| $antwort = N ]]
2204	then
2205	locat=user_abort; (( iec = 0 )); exit
2206	fi
2207	if [[ $do_batch = true ]]
2208	then
2209	printf " >>> batch-job will be created and submitted"
2210	else
2211	if [[ $local_compile = false ]]
2212	then
2213	printf " >>> MRUN will now continue to execute on this machine"
2214	else
2215	printf " >>> a test compilation will now be carried out on this machine"
2216	fi
2217	fi
2218	fi
2219
2220
2221	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2222	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2223	check_depository="${working_directory}/trunk/UTIL"
2224	check_sources="${working_directory}/tmp_check_namelist_files"
2225	skip_check=false
2226
2227	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2228	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2229	then
2230	skip_check=true
2231	reason="run on remote host or parameter file check has not been compiled."
2232	fi
2233	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2234	then
2235	skip_check=true
2236	reason="parameter file check has not been compiled."
2237	fi
2238
2239	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2240	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2241	then
2242	skip_check=true
2243	reason="serial run."
2244	fi
2245
2246	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2247	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2248	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2249	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2250	if [[ $check_namelist_files == false ]]
2251	then
2252	skip_check=true
2253	reason="-z option set."
2254	fi
2255
2256	if [[ $fromhost != $localhost ]]
2257	then
2258	skip_check=true
2259	reason="submitting host is local host."
2260	fi
2261
2262	if [[ $run_coupled_model == true ]]
2263	then
2264	skip_check=true
2265	reason="coupled run."
2266	fi
2267
2268	if [[ $restart_run == true ]]
2269	then
2270	skip_check=true
2271	reason="restart run."
2272	fi
2273
2274	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2275	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2276	last_char=`echo $filename_input \| cut -c $last_char`
2277	if [[ "$last_char" == "f" ]]
2278	then
2279	skip_check=true
2280	reason="restart run."
2281	fi
2282
2283	if [[ $skip_check == false ]]
2284	then
2285	tmp_check=${working_directory}/tmp_check
2286
2287	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2288	# NOT NECESSARILY REQUIRED
2289	line=""
2290	found=false
2291	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2292	while read line1
2293	do
2294	line="$line1"
2295	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2296	then
2297	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2298	found=true
2299	fi
2300	done < $tmp_check
2301
2302	if [[ $found = false ]]
2303	then
2304	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2305	fi
2306
2307	rm -rf ${working_directory}/tmp_check
2308
2309	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2310	for item in $input_list
2311	do
2312	if [[ "$item" == "restart" ]]
2313	then
2314	check_restart=1
2315	else
2316	check_restart=0
2317	fi
2318	done
2319
2320	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2321	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2322	then
2323	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2324	locat=check_namelist; exit
2325	fi
2326
2327	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2328	if [[ $check_restart == 1 ]]
2329	then
2330
2331	filenamef="${filename_input}f"
2332	if [[ ! -f $filenamef ]]
2333	then
2334	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2335	check_restart=0
2336	answer=dummy
2337	printf "\n\n"
2338
2339	if [[ $silent == false ]]
2340	then
2341	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2342	do
2343	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2344	read answer
2345	done
2346	if [[ $answer = a \|\| $answer = A ]]
2347	then
2348	printf "\n +++ Aborting...."
2349	locat=normal; exit
2350	fi
2351	fi
2352	else
2353	check_restart=1
2354	fi
2355	fi
2356
2357	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2358	mkdir $check_sources
2359	cd $check_sources
2360
2361
2362	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2363	if [[ -d $add_source_path ]]
2364	then
2365	printf "\n\n *** copying files from $check_depository"
2366	cp $check_depository/check_namelist_files.tar ./
2367
2368	printf "\n\n *** untar of makefile and source files in $check_sources"
2369	tar -xf check_namelist_files.tar > /dev/null 2>&1
2370
2371	printf "\n\n *** adding user code."
2372	cp $add_source_path/* ./
2373	touch check_namelist_files.f90
2374
2375	# GET COMPILER OPTIONS AND PERFORM MAKE
2376	printf "\n\n *** compiling code if necessary...\n"
2377
2378	# workaround for batch jobs on local machine (lcxe6)
2379	if [[ $do_batch == true && $do_remote == false ]]
2380	then
2381	eval $init_cmds
2382	fi
2383
2384	# GET CHECK OPTIONS
2385	line=""
2386	found=false
2387
2388	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2389
2390	while read line1
2391	do
2392
2393	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2394	then
2395	line="$line1"
2396	fi
2397
2398	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2399	then
2400	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2401	line="$line "
2402	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2403	found=true
2404	fi
2405
2406	done < $tmp_check
2407	copts_check="$copts_check -D__check -D__parallel"
2408
2409	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2410
2411	# GET MAKE OUTPUT
2412	if [[ $? != 0 ]]
2413	then
2414	printf "\n +++ error during make."
2415	answer=dummy
2416	printf "\n\n"
2417	if [[ $silent == false ]]
2418	then
2419	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2420	do
2421	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2422	read answer
2423	done
2424	if [[ $answer = a \|\| $answer = A ]]
2425	then
2426	printf "\n +++ Aborting..."
2427	rm -rf $check_sources
2428	locat=normal; exit
2429	else
2430	skip_check=true
2431	fi
2432	else
2433	skip_check=true
2434	fi
2435	fi
2436	else
2437	cp $PALM_BIN/check_namelist_files.x ./
2438	fi
2439
2440	cp $filename_input ./PARIN
2441	if [[ $check_restart == 1 ]]
2442	then
2443	cp $filenamef ./PARINF
2444	fi
2445
2446	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2447	then
2448	printf "\n *** adding topography data"
2449	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2450
2451	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2452	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2453	# WHICH REQUIRE SUFFICIENT MEMORY
2454	ulimit -s unlimited
2455	fi
2456
2457	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2458	cat > ENVPAR << %%END%%
2459	&envpar run_identifier = '$fname', host = '$host',
2460	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2461	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2462	maximum_cpu_time_allowed = ${cpumax}.,
2463	revision = '$global_revision',
2464	local_dvrserver_running = $local_dvrserver_running /
2465
2466	%%END%%
2467
2468	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2469	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2470	then
2471	printf "\n +++ WARNING: check_namelist_files.x not found."
2472	answer=dummy
2473	printf "\n\n"
2474
2475	if [[ $silent == false ]]
2476	then
2477	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2478	do
2479	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2480	read answer
2481	done
2482	if [[ $answer = a \|\| $answer = A ]]
2483	then
2484	printf "\n +++ Aborting..."
2485	rm -rf $check_sources
2486	locat=normal; exit
2487	else
2488	printf "\n *** skipping parameter file check."
2489	fi
2490	fi
2491
2492	elif [[ $skip_check == false ]]
2493	then
2494	# STARTING THE PARAMETER FILE CHECK
2495	printf "\n\n *** starting parameter file check..."
2496
2497	# CHECKING THE P3D FILE
2498	printf "\n\n (1) checking $filename_input"
2499	echo "$numprocs 0 0" > VARIN
2500	errors=`./check_namelist_files.x < VARIN 2>&1`
2501
2502	check_error=false
2503	if [[ "$errors" == "" ]]
2504	then
2505	printf " --> o.k."
2506	else
2507	printf " --> failed."
2508	check_error=true
2509	printf "\n\n $errors"
2510	fi
2511
2512	# CHECKING THE PD3F FILE IF NECESSARY
2513	if [[ $check_restart == 1 && $check_error == false ]]
2514	then
2515	printf "\n\n (2) checking $filenamef"
2516
2517	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2518	# IN &INIPAR LIST
2519	found=false
2520	cat PARINF \| while read line
2521	do
2522	line=$(echo $line\|sed 's/ //g')
2523	if [[ $line == "&inipar" ]]
2524	then
2525	start_search=true
2526	fi
2527
2528	if [[ $start_search == true ]]
2529	then
2530	if [[ $line == "initializing_actions='read_restart_data'" ]]
2531	then
2532	found=true
2533	break
2534	fi
2535	fi
2536
2537	if [[ $line == "/" ]]
2538	then
2539	start_search=false
2540	fi
2541
2542	done
2543
2544	if [[ $found = false ]]
2545	then
2546	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2547	printf "\n in &inipar list in $fname$p3df_suffix."
2548	rm -rf $check_sources
2549	locat=check_namelist; exit
2550	fi
2551
2552	# READ max_user_pr FROM FILES
2553	if [[ -f parin_for_check ]]
2554	then
2555	read max_pr_user < parin_for_check
2556	else
2557	max_user_pr=0
2558	fi
2559
2560	echo "$numprocs 1 $max_pr_user" > VARIN
2561	errors=`./check_namelist_files.x < VARIN 2>&1`
2562
2563	if [[ "$errors" == "" ]]
2564	then
2565	printf " --> o.k."
2566	else
2567	printf " --> failed."
2568	check_error=true
2569	printf "\n\n $errors"
2570	fi
2571	fi
2572
2573	# REPORT ERRORS AND CONTINUE/EXIT
2574	if [[ $check_error == true ]]
2575	then
2576	printf "\n +++ errors found in the parameter file!\n"
2577	answer=dummy
2578	printf "\n\n"
2579
2580	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2581	do
2582	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2583	read answer
2584	done
2585
2586	if [[ $answer = a \|\| $answer = A ]]
2587	then
2588	printf "\n +++ Aborting..."
2589	rm -rf $check_sources
2590	locat=normal; exit
2591	fi
2592	else
2593	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2594	fi
2595	rm -rf $check_sources
2596	fi
2597	else
2598	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2599	fi
2600
2601	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2602	rm -rf $check_sources
2603	cd $working_directory
2604
2605
2606	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2607	# CHENDE AKTIONEN DURCHGEFUEHRT
2608	if [[ $do_batch = false ]]
2609	then
2610
2611
2612	# TEMPORAEREN KATALOG ERZEUGEN
2613	mkdir -p $TEMPDIR
2614	chmod go+rx $TEMPDIR
2615	tmpcreate=true
2616
2617	# set striping on lustre file system
2618	# if [[ $localhost = lcsgih ]]
2619	# then
2620	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2621	# lfs getstripe $TEMPDIR
2622	# fi
2623
2624
2625	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2626	# TEMPORAERES VERZEICHNIS KOPIEREN
2627	if [[ $do_compile = true ]]
2628	then
2629
2630	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2631	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2632	if [[ $localhost = nech ]]
2633	then
2634	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2635	if mkdir -p $TEMPDIR_COMPILE
2636	then
2637	printf "\n *** \"$TEMPDIR_COMPILE\" "
2638	printf "\n is generated as temporary directory for cross compiling\n"
2639	else
2640	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2641	printf "\n needed for cross compilation failed"
2642	locat=compile
2643	exit
2644	fi
2645	else
2646	TEMPDIR_COMPILE=$TEMPDIR
2647	fi
2648
2649
2650	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2651	line=""
2652	grep "%depository_path" $config_file > tmp_mrun
2653	while read line
2654	do
2655	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2656	then
2657	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2658	then
2659	global_depository_path=`echo $line \| cut -d" " -s -f2`
2660	fi
2661	fi
2662	done < tmp_mrun
2663
2664	line=""
2665	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2666	while read line
2667	do
2668	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2669	then
2670	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2671	then
2672	local_depository_path=`echo $line \| cut -d" " -s -f2`
2673	fi
2674	fi
2675	done < tmp_mrun
2676
2677	if [[ "$local_depository_path" = "" ]]
2678	then
2679	if [[ "$global_depository_path" != "" ]]
2680	then
2681	local_depository_path=$global_depository_path
2682	else
2683	printf "\n\n +++ no depository path found in configuration file"
2684	printf "\n for local host \"$localhost\" "
2685	printf "\n please set \"\%depository_path\" in configuration file\n"
2686	locat=config_file; exit
2687	fi
2688	fi
2689	eval local_depository_path=$local_depository_path
2690	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2691	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2692
2693
2694	basename=`echo $mainprog \| cut -f1 -d"."`
2695	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2696	if [[ ! -f $make_depository ]]
2697	then
2698	printf "\n"
2699	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2700	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2701	else
2702	cp $make_depository $TEMPDIR_COMPILE
2703	cd $TEMPDIR_COMPILE
2704	tar -xf $make_depository > /dev/null 2>&1
2705	cd - > /dev/null
2706	fi
2707
2708	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2709
2710	else
2711
2712	cp $executable ${TEMPDIR}/a.out
2713
2714	fi
2715
2716
2717	# WECHSEL IN TEMPORAEREN KATALOG
2718	cd $TEMPDIR
2719	printf "\n *** changed to temporary directory: $TEMPDIR"
2720
2721
2722	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2723	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2724	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2725	# ERMITTELN
2726	(( i = 0 ))
2727	while (( i < iout ))
2728	do
2729	(( i = i + 1 ))
2730	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2731	then
2732	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2733	else
2734	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2735	fi
2736	done
2737
2738
2739	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2740	if [[ $do_compile = true ]]
2741	then
2742
2743
2744	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2745	printf "\n\n\n *** compilation starts \n$striche\n"
2746	printf " *** compilation with make using following options:\n"
2747	printf " make depository: $make_depository"
2748	if [[ "$mopts" != "" ]]
2749	then
2750	printf " make options: $mopts\n"
2751	fi
2752	printf " compilername: $compiler_name\n"
2753	printf " compiler options: $fopts\n"
2754	printf " preprocessor directives: $cpp_options \n"
2755	printf " linker options: $lopts \n"
2756	if [[ "$modules" != "" ]]
2757	then
2758	printf " modules to be load: $modules \n"
2759	fi
2760	printf " source code files: $source_list \n"
2761
2762	if [[ $localhost = nech ]]
2763	then
2764	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2765	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2766	cp $TEMPDIR_COMPILE/a.out .
2767	[[ $? != 0 ]] && compile_error=true
2768	rm -rf $TEMPDIR_COMPILE
2769	elif [[ $localhost = ibmh ]]
2770	then
2771	printf " compiler is called via ssh on \"plogin1\" \n"
2772	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2773	[[ ! -f a.out ]] && compile_error=true
2774	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2775	elif [[ $localhost = lcsgib ]]
2776	then
2777	printf " compiler is called via ssh on \"bicegate0\" \n"
2778	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2779	[[ ! -f a.out ]] && compile_error=true
2780	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2781	elif [[ $localhost = lcsgih ]]
2782	then
2783	printf " compiler is called via ssh on \"hicegate0\" \n"
2784	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2785	[[ ! -f a.out ]] && compile_error=true
2786	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2787	elif [[ $localhost = lcflow ]]
2788	then
2789	printf " compiler is called via ssh on \"flow\" \n"
2790	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2791	[[ ! -f a.out ]] && compile_error=true
2792	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2793	else
2794	[[ "$init_cmds" != "" ]] && eval $init_cmds
2795	[[ "$module_calls" != "" ]] && eval $module_calls
2796	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2797
2798	fi
2799
2800	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2801	then
2802	printf "\n +++ error occured while compiling or linking"
2803	locat=compile
2804
2805	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2806	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2807	# then
2808	exit
2809	# else
2810	# locat=normal
2811	# fi
2812	else
2813	printf "$striche\n *** compilation finished \n"
2814	fi
2815	fi
2816
2817
2818	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2819	if [[ $local_compile = true ]]
2820	then
2821	cd $HOME
2822	rm -rf $TEMPDIR
2823	locat=local_compile; exit
2824	fi
2825
2826
2827	# BEREITSTELLEN DER INPUT-DATEIEN
2828	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2829	(( i = 0 ))
2830	while (( i < iin ))
2831	do
2832	(( i = i + 1 ))
2833	if (( i == 1 ))
2834	then
2835	printf "\n\n *** providing INPUT-files:\n$striche"
2836	fi
2837
2838
2839	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2840	if [[ "${transin[$i]}" = unavailable ]]
2841	then
2842	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2843	then
2844	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2845	printf "\n is not available!"
2846	else
2847	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2848	printf "\n is not available!"
2849	fi
2850	continue
2851	fi
2852
2853	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2854	files_for_pes=false; datentyp=file
2855	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2856	then
2857	files_for_pes=true; datentyp=directory
2858	actionin[$i]=""
2859	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2860	then
2861	actionin[$i]=""
2862	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2863	then
2864	files_for_pes=true; datentyp=directory
2865	actionin[$i]="ar"
2866	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2867	then
2868	actionin[$i]="ar"
2869	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2870	then
2871	files_for_pes=true; datentyp=directory
2872	actionin[$i]="fl"
2873	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2874	then
2875	actionin[$i]="fl"
2876	fi
2877
2878	if [[ $files_for_pes = true ]]
2879	then
2880	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2881	else
2882	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2883	fi
2884
2885	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2886	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2887	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2888	# SERVER ZU HOLEN
2889	if [[ "${actionin[$i]}" = fl ]]
2890	then
2891	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2892	if [[ $files_for_pes = false ]]
2893	then
2894	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2895	then
2896	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2897	got_tmp[$i]=true
2898	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2899	then
2900	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2901	printf "\n *** trying to use backup copy in \"$WORK\" "
2902	cp $WORK/${frelin[$i]} ${localin[$i]}
2903	else
2904	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2905	printf "\n or \"$tmp_data_catalog\" does not exist!"
2906	printf "\n *** trying to get copy from archive"
2907	actionin[$i]=ar
2908	fi
2909	else
2910	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2911	then
2912	mkdir ${localin[$i]}
2913	cd $tmp_data_catalog/${frelin[$i]}
2914	for file in $(ls *)
2915	do
2916	ln $file $TEMPDIR/${localin[$i]}
2917	done
2918	cd $TEMPDIR
2919	got_tmp[$i]=true
2920	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2921	then
2922	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2923	printf "\n *** trying to use backup copy in \"$WORK\" "
2924	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2925	else
2926	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2927	printf "\n or \"$tmp_data_catalog\" does not exist!"
2928	printf "\n *** trying to get copy from archive"
2929	actionin[$i]=ar
2930	fi
2931	fi
2932	fi
2933
2934
2935	# DATEI LIEGT AUF ARCHIV-SERVER
2936	if [[ "${actionin[$i]}" = ar ]]
2937	then
2938
2939	if [[ $files_for_pes = false ]]
2940	then
2941	printf "\n file will be restored from archive-system ($archive_system)!"
2942	else
2943	printf "\n directory will be restored from archive-system ($archive_system)!"
2944	fi
2945
2946	file_restored=false
2947
2948	if [[ $archive_system = asterix ]]
2949	then
2950	do_stagein=true
2951	(( stagein_anz = 0 ))
2952	while [[ $do_stagein = true ]]
2953	do
2954	if [[ $files_for_pes = false ]]
2955	then
2956	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2957	else
2958	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2959	fi
2960	cat STAGEIN_OUTPUT
2961	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2962	then
2963	file_restored=true
2964	do_stagein=false
2965	else
2966	(( stagein_anz = stagein_anz + 1 ))
2967	if (( stagein_anz == 10 ))
2968	then
2969	printf "\n +++ stagein stoped after 10 tries"
2970	locat=stage
2971	exit
2972	fi
2973	printf "\n +++ restoring from archive failed, trying again:"
2974	sleep 900
2975	fi
2976	done
2977	elif [[ $archive_system = DMF ]]
2978	then
2979	if [[ $files_for_pes = false ]]
2980	then
2981	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2982	locat=DMF
2983	exit
2984	else
2985	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2986	cp -r $ARCHIVE/${frelin[$i]} $PWD
2987	file_restored=true
2988	fi
2989	elif [[ $archive_system = tivoli ]]
2990	then
2991	if [[ $files_for_pes = false ]]
2992	then
2993	if [[ $localhost = lcsgih ]]
2994	then
2995	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2996	else
2997	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2998	fi
2999	else
3000	(( inode = 0 ))
3001	while (( inode < nodes ))
3002	do
3003	if [[ $localhost = lcsgih ]]
3004	then
3005	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3006	else
3007	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3008	fi
3009	(( inode = inode + 1 ))
3010	done
3011	fi
3012	file_restored=true
3013	elif [[ $archive_system = ut ]]
3014	then
3015	if [[ $files_for_pes = false ]]
3016	then
3017	cp $UT/${frelin[$i]} .
3018	else
3019	(( inode = 0 ))
3020	while (( inode < nodes ))
3021	do
3022	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3023	(( inode = inode + 1 ))
3024	done
3025	fi
3026	file_restored=true
3027	else
3028	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3029	locat=rearchive
3030	exit
3031	fi
3032
3033	if [[ $file_restored = true ]]
3034	then
3035
3036	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3037	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3038	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3039	if [[ $files_for_pes = false ]]
3040	then
3041	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3042	else
3043	mkdir $tmp_data_catalog/${frelin[$i]}
3044	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3045	fi
3046	got_tmp[$i]=true
3047
3048	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3049	mv ${frelin[$i]} ${localin[$i]}
3050
3051	fi
3052	fi
3053
3054
3055	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3056	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3057	then
3058
3059	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3060	then
3061
3062	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3063	printf "\n file will be provided for $numprocs processors"
3064	mkdir ${localin[$i]}
3065	ival=$numprocs
3066	(( ii = 0 ))
3067	while (( ii <= ival-1 ))
3068	do
3069	if (( ii < 10 ))
3070	then
3071	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3072	elif (( ii < 100 ))
3073	then
3074	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3075	elif (( ii < 1000 ))
3076	then
3077	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3078	else
3079	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3080	fi
3081	(( ii = ii + 1 ))
3082	done
3083
3084	else
3085
3086	if [[ $files_for_pes = true ]]
3087	then
3088
3089	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3090	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3091	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3092	# PER MOVE UMBENANNT WERDEN
3093	printf "\n providing $numprocs files for the respective processors"
3094	mkdir ${localin[$i]}
3095	if [[ $link_local_input = true ]]
3096	then
3097	printf " using ln -f\n"
3098	cd ${absnamein[$i]}
3099	for file in $(ls *)
3100	do
3101	ln -f $file ${localin[$i]}
3102	done
3103	cd $TEMPDIR
3104	fi
3105	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3106	if [[ ! -f "${localin[$i]}/_0000" ]]
3107	then
3108	if [[ $link_local_input = true ]]
3109	then
3110	printf " ln failed for .../_0000, using cp...\n"
3111	fi
3112	cp -r ${absnamein[$i]}/* ${localin[$i]}
3113	fi
3114
3115	else
3116	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3117	if [[ $link_local_input = true ]]
3118	then
3119	printf " using ln -f\n"
3120	ln -f ${absnamein[$i]} ${localin[$i]}
3121	fi
3122	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3123	if [[ ! -f "${localin[$i]}" ]]
3124	then
3125	if [[ $link_local_input = true ]]
3126	then
3127	printf " ln failed, using cp...\n"
3128	fi
3129	cp ${absnamein[$i]} ${localin[$i]}
3130	fi
3131	fi
3132	fi
3133	fi
3134
3135	done
3136	if (( i != 0 ))
3137	then
3138	printf "\n$striche\n *** all INPUT-files provided \n"
3139	fi
3140
3141
3142	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3143	(( i = 0 ))
3144	while (( i < iic ))
3145	do
3146	(( i = i + 1 ))
3147	if (( i == 1 ))
3148	then
3149	printf "\n\n *** execution of INPUT-commands:\n$striche"
3150	fi
3151	printf "\n >>> ${in_command[$i]}"
3152	eval ${in_command[$i]}
3153	if (( i == iic ))
3154	then
3155	printf "\n$striche\n"
3156	fi
3157	done
3158
3159
3160	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3161	cpurest=${cpumax}.
3162
3163
3164	# START DVR STREAMING SERVER
3165	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3166	then
3167	if [[ "$dvr_server" != "" ]]
3168	then
3169
3170	printf "\n\n *** preparing the dvr streaming server configuration file"
3171
3172	# Check, if a dvr server is already running
3173	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3174	if [[ "$running_dvrserver_id" != "" ]]
3175	then
3176
3177	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3178	printf "\n This server is used instead starting a new one!"
3179	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3180
3181	else
3182
3183	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3184	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3185	then
3186	cp ${PALM_BIN}/.dvrserver.config .
3187
3188	# Entering the BASEDIR, UID and GID into this file
3189	user_id=`id -u`
3190	group_id=`id -g`
3191	# & is needed as seperator, because TEMPDIR contains /
3192	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3193	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3194	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3195	mv .dvrserver.3 .dvrserver.config
3196	rm .dvrserver.1 .dvrserver.2
3197
3198	# Start dvr server in background, get his id and print on terminal
3199	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3200	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3201	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3202	local_dvrserver_running=.TRUE.
3203	else
3204	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3205	printf "\n \"$PALM_BIN\" "
3206	locat=dvr
3207	exit
3208	fi
3209
3210	fi
3211
3212	else
3213	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3214	fi
3215	fi
3216
3217
3218	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3219	# LESEN VON PALM)
3220	cat > ENVPAR << %%END%%
3221	&envpar run_identifier = '$fname', host = '$localhost',
3222	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3223	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3224	maximum_cpu_time_allowed = ${cpumax}.,
3225	revision = '$global_revision',
3226	local_dvrserver_running = $local_dvrserver_running /
3227
3228	%%END%%
3229
3230
3231	# PROGRAMMSTART
3232	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3233	PATH=$PATH:$TEMPDIR
3234
3235	# MPI debug option (argument checking, slows down execution due to increased latency)
3236	if [[ "$mpi_debug" = true ]]
3237	then
3238	export MPI_CHECK_ARGS=1
3239	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3240	fi
3241
3242	if [[ "$totalview" = true ]]
3243	then
3244	printf "\n *** totalview debugger will be used"
3245	tv_opt="-tv"
3246	else
3247	tv_opt=""
3248	fi
3249
3250	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3251	then
3252	if [[ "$ENVIRONMENT" = BATCH ]]
3253	then
3254	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3255	then
3256	printf "\n +++ debug is allowed in interactive mode only"
3257	locat=debug
3258	exit
3259	fi
3260	fi
3261	if [[ $localhost = ibmh ]]
3262	then
3263
3264	# SETUP THE IBM MPI ENVIRONMENT
3265	export MP_SHARED_MEMORY=yes
3266	export AIXTHREADS_SCOPE=S
3267	export OMP_NUM_THREADS=$threads_per_task
3268	export AUTHSTATE=files
3269	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3270
3271	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3272	export MP_ADAPTER_USE=shared
3273	export MP_CPU_USE=multiple
3274	export MP_TIMEOUT=1200
3275
3276	unset MP_TASK_AFFINITY
3277
3278	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3279	#(( ii = 1 ))
3280	#while (( ii <= $numprocs ))
3281	#do
3282	# echo $localhost_realname >> hostfile
3283	# (( ii = ii + 1 ))
3284	#done
3285	#export MP_HOSTFILE=hostfile
3286
3287	if [[ "$LOADLBATCH" = yes ]]
3288	then
3289	totalview poe a.out $ROPTS
3290	else
3291	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3292	export TVDSVRLAUNCHCMD=ssh
3293	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3294	fi
3295	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3296	then
3297	# CURRENTLY NO DEBUGGER ON LCSGI
3298	if [[ $run_coupled_model = true ]]
3299	then
3300	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3301	locat=debug
3302	exit
3303	else
3304	echo "no_coupling" > runfile_atmos
3305	fi
3306	(( ii = $numprocs / $threads_per_task ))
3307	export OMP_NUM_THREADS=$threads_per_task
3308	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3309	if [[ $threads_per_task != 1 ]]
3310	then
3311	printf "\n threads per task: $threads_per_task"
3312	fi
3313	printf "\n\n"
3314	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3315	then
3316	# export MPI_LAUNCH_TIMEOUT=360
3317	if [[ "$totalview" = true ]]
3318	then
3319	printf "\n running totalview debugger"
3320	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3321	else
3322	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3323	fi
3324	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3325	then
3326	# ulimit -s 300000 # A too large stack size causes problems
3327	# export MV2_NUM_PORTS=2
3328	# export MV2_CPU_MAPPING=0:1:2:3
3329	if [[ "$totalview" = true ]]
3330	then
3331	printf "\n running totalview debugger"
3332	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3333	else
3334	mpiexec ./a.out $ROPTS < runfile_atmos
3335	fi
3336	fi
3337	else
3338	printf "\n +++ no debug available on \"$localhost\" "
3339	printf "\n or not implemented in mrun so far"
3340	locat=debug
3341	exit
3342	fi
3343
3344	# end debug mode
3345	else
3346
3347	# normal execution
3348	if [[ -n $numprocs ]]
3349	then
3350	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3351	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3352	then
3353	# SETUP THE IBM MPI ENVIRONMENT
3354	if [[ $host != ibmh && $host != ibmkisti ]]
3355	then
3356	export MP_SHARED_MEMORY=yes
3357	export AIXTHREAD_SCOPE=S
3358	export OMP_NUM_THREADS=$threads_per_task
3359	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3360	export AUTHSTATE=files
3361	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3362	# export MP_PRINTENV=yes
3363
3364	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3365	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3366	export MP_WAIT_MODE=poll
3367	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3368	fi
3369
3370	if [[ $host = ibmkisti ]]
3371	then
3372	export LANG=en_US
3373	export MP_SHARED_MEMORY=yes
3374	if [[ $threads_per_task = 1 ]]
3375	then
3376	export MP_SINGLE_THREAD=yes
3377	export MEMORY_AFFINITY=MCM
3378	else
3379	export OMP_NUM_THREADS=$threads_per_task
3380	fi
3381	fi
3382
3383	if [[ "$LOADLBATCH" = yes ]]
3384	then
3385	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3386	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3387	then
3388	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3389	else
3390	if [[ $run_coupled_model = false ]]
3391	then
3392	if [[ "$ocean_file_appendix" = true ]]
3393	then
3394	echo "precursor_ocean" > runfile_atmos
3395	else
3396	echo "precursor_atmos" > runfile_atmos
3397	fi
3398	else
3399	(( iia = $numprocs_atmos / $threads_per_task ))
3400	(( iio = $numprocs_ocean / $threads_per_task ))
3401	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3402	printf "\n using $coupled_mode coupling"
3403	printf "\n\n"
3404	echo "coupled_run $iia $iio" > runfile_atmos
3405	fi
3406	poe ./a.out $ROPTS < runfile_atmos
3407	fi
3408	else
3409	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3410	then
3411	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3412	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3413	then
3414	if [[ -f $hostfile ]]
3415	then
3416	cp $hostfile hostfile
3417	else
3418	(( ii = 1 ))
3419	while (( ii <= $numprocs ))
3420	do
3421	echo $localhost_realname >> hostfile
3422	(( ii = ii + 1 ))
3423	done
3424	fi
3425	export MP_HOSTFILE=hostfile
3426	if [[ $run_coupled_model = false ]]
3427	then
3428	if [[ "$ocean_file_appendix" = true ]]
3429	then
3430	echo "precursor_ocean" > runfile_atmos
3431	else
3432	echo "precursor_atmos" > runfile_atmos
3433	fi
3434	else
3435	(( iia = $numprocs_atmos / $threads_per_task ))
3436	(( iio = $numprocs_ocean / $threads_per_task ))
3437	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3438	printf "\n using $coupled_mode coupling"
3439	printf "\n\n"
3440	echo "coupled_run $iia $iio" > runfile_atmos
3441	fi
3442	if [[ $localhost = ibmy ]]
3443	then
3444	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3445	else
3446	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3447	fi
3448
3449	else
3450	if [[ "$host_file" = "" ]]
3451	then
3452	printf "\n +++ no hostfile given in configuration file"
3453	locat=config_file
3454	exit
3455	else
3456	eval host_file=$host_file
3457	fi
3458	export MP_HOSTFILE=$host_file
3459	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3460	fi
3461	fi
3462	elif [[ $host = nech \|\| $host = necriam ]]
3463	then
3464	(( ii = nodes ))
3465	if [[ $ii = 1 ]]
3466	then
3467	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3468	export MPIPROGINF=YES
3469	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3470	echo "*** execution on single node with mpirun"
3471	mpirun -np $numprocs ./a.out $ROPTS
3472	else
3473	(( i = 0 ))
3474	while (( i < ii ))
3475	do
3476	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3477	(( i = i + 1 ))
3478	done
3479
3480	echo "#!/bin/sh" > mpi_exec_shell
3481	echo " " >> mpi_exec_shell
3482	echo "set -u" >> mpi_exec_shell
3483	echo "F_ERRCNT=0" >> mpi_exec_shell
3484	echo "MPIPROGINV=YES" >> mpi_exec_shell
3485	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3486	echo "cpurest=$cpurest" >> mpi_exec_shell
3487	echo "fname=$fname" >> mpi_exec_shell
3488	echo "localhost=$localhost" >> mpi_exec_shell
3489	echo "return_addres=$return_addres" >> mpi_exec_shell
3490	echo "return_username=$return_username" >> mpi_exec_shell
3491	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3492	echo "write_binary=$write_binary" >> mpi_exec_shell
3493	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3494	echo " " >> mpi_exec_shell
3495	echo "export F_ERRCNT" >> mpi_exec_shell
3496	echo "export MPIPROGINV" >> mpi_exec_shell
3497	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3498	echo "export cpurest" >> mpi_exec_shell
3499	echo "export fname" >> mpi_exec_shell
3500	echo "export localhost" >> mpi_exec_shell
3501	echo "export return_addres" >> mpi_exec_shell
3502	echo "export return_username" >> mpi_exec_shell
3503	echo "export tasks_per_node" >> mpi_exec_shell
3504	echo "export write_binary" >> mpi_exec_shell
3505	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3506	echo " " >> mpi_exec_shell
3507	echo "exec ./a.out" >> mpi_exec_shell
3508
3509	chmod u+x mpi_exec_shell
3510	export MPIPROGINF=YES
3511	mpirun -f multinode_config &
3512	wait
3513
3514	fi
3515	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3516	then
3517
3518	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3519	# DOES NOT EXIST
3520	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3521	then
3522	if [[ -f $hostfile ]]
3523	then
3524	cp $hostfile hostfile
3525	(( ii = $numprocs / $threads_per_task ))
3526	else
3527	(( ii = 1 ))
3528	while (( ii <= $numprocs / $threads_per_task ))
3529	do
3530	echo $localhost_realname >> hostfile
3531	(( ii = ii + 1 ))
3532	done
3533	fi
3534	eval zeile=\"`head -n $ii hostfile`\"
3535	printf "\n *** running on: $zeile"
3536	fi
3537
3538	(( ii = $numprocs / $threads_per_task ))
3539	export OMP_NUM_THREADS=$threads_per_task
3540	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3541	if [[ $threads_per_task != 1 ]]
3542	then
3543	# increase stack size to unlimited, because large runs
3544	# may abort otherwise
3545	ulimit -Ss unlimited
3546	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3547	fi
3548	if [[ $run_coupled_model = false ]]
3549	then
3550	if [[ "$ocean_file_appendix" = true ]]
3551	then
3552	echo "precursor_ocean" > runfile_atmos
3553	else
3554	echo "precursor_atmos" > runfile_atmos
3555	fi
3556	printf "\n\n"
3557	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3558	then
3559	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3560	then
3561	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3562	# export MPI_DSM_DISTRIBUTE=1
3563	# MPI_DSM_CPULIST: pin MPI processes to cores
3564	if [[ $use_openmp = false ]]
3565	then
3566	if [[ "$sgi_feature" = ice2 ]]
3567	then
3568	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3569	else
3570	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3571	fi
3572	else
3573	unset MPI_DSM_CPULIST
3574	fi
3575	# MPI_IB_RAILS: use both IB rails on ICE2
3576	export MPI_BUFS_PER_HOST=512
3577	export MPI_IB_RAILS=2
3578	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3579	export MPI_CONNECTIONS_THRESHOLD=8192
3580	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3581	export MPI_TYPE_DEPTH=20
3582	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3583	export MPI_GROUP_MAX=64
3584	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3585	if [[ $use_openmp = true ]]
3586	then
3587	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3588	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3589	else
3590	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3591	fi
3592
3593	# next is test for openmp usage
3594	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3595	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3596	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3597	then
3598	export MV2_NUM_PORTS=2
3599	# The default setting of MV2_CPU_MAPPING gives best results
3600	# export MV2_ENABLE_AFFINITY=1
3601	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3602	# if [[ "$sgi_feature" = ice2 ]]
3603	# then
3604	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3605	# else
3606	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3607	# fi
3608	if [[ $use_openmp = true ]]
3609	then
3610	unset MV2_CPU_MAPPING
3611	export MV2_ENABLE_AFFINITY=0
3612	fi
3613	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3614	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3615	if [[ $use_openmp = true ]]
3616	then
3617	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3618	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3619	else
3620	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3621	fi
3622	elif [[ "$mpilib" = impi ]]
3623	then
3624	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3625	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3626	fi
3627	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3628	then
3629	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3630	elif [[ $host = lcflow ]]
3631	then
3632	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3633	elif [[ $host = lcsb ]]
3634	then
3635	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3636	elif [[ $host = lckiaps ]]
3637	then
3638	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3639	elif [[ $host = lckyu* ]]
3640	then
3641	mpiexec -n $ii ./a.out < runfile_atmos $ROPTS
3642	else
3643	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3644	fi
3645	else
3646
3647	# currently there is no full MPI-2 support on ICE and XT4
3648	(( iia = $numprocs_atmos / $threads_per_task ))
3649	(( iio = $numprocs_ocean / $threads_per_task ))
3650	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3651	printf "\n using $coupled_mode coupling"
3652	printf "\n\n"
3653
3654	if [[ $coupled_mode = "mpi2" ]]
3655	then
3656	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3657	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3658	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3659	then
3660
3661	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3662	then
3663	# export MPI_LAUNCH_TIMEOUT=360
3664	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3665	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3666	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3667	then
3668	# ulimit -s 300000 # A too large stack size causes problems
3669	# export MV2_NUM_PORTS=2
3670	# export MV2_CPU_MAPPING=0:1:2:3
3671	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3672	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3673	fi
3674
3675	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3676	then
3677
3678	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3679	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3680
3681	else
3682	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3683	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3684	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3685	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3686	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3687	fi
3688	wait
3689
3690	else
3691
3692	echo "coupled_run $iia $iio" > runfile_atmos
3693	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3694	then
3695
3696	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3697	then
3698	# export MPI_LAUNCH_TIMEOUT=360
3699	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3700	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3701	then
3702	# ulimit -s 300000 # A too large stack size causes problems
3703	# export MV2_NUM_PORTS=2
3704	# export MV2_CPU_MAPPING=0:1:2:3
3705	mpiexec ./a.out $ROPTS < runfile_atmos
3706	fi
3707
3708	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3709	then
3710
3711	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3712
3713	elif [[ $host = lck \|\| $host = lckordi ]]
3714	then
3715	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3716	fi
3717	wait
3718	fi
3719
3720	fi
3721	elif [[ $host = lckyoto ]]
3722	then
3723	set -xv
3724	export P4_RSHCOMMAND=plesh
3725	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3726	if [[ "$ENVIRONMENT" = BATCH ]]
3727	then
3728	if [[ "$cond2" = fujitsu ]]
3729	then
3730	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3731	elif [[ "cond2" = pgi ]]
3732	then
3733	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3734	else
3735	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3736	fi
3737	else
3738	if [[ "$cond2" = "" ]]
3739	then
3740	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3741	else
3742	mpirun -np $numprocs ./a.out $ROPTS
3743	fi
3744	fi
3745	set +xv
3746	elif [[ $host = lctit ]]
3747	then
3748	export OMP_NUM_THREADS=$threads_per_task
3749	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3750	if [[ "$threads_per_task" != 1 ]]
3751	then
3752	export MV2_ENABLE_AFFINITY=0
3753	fi
3754	echo "----- PBS_NODEFILE content:"
3755	cat $PBS_NODEFILE
3756	echo "-----"
3757	(( ii = $numprocs / $threads_per_task ))
3758	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3759	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3760	else
3761	mpprun -n $numprocs a.out $ROPTS
3762	fi
3763	[[ $? != 0 ]] && execution_error=true
3764
3765
3766	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3767	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3768	then
3769	apprentice
3770	fi
3771	else
3772	a.out $ROPTS
3773	fi
3774	fi
3775	if [[ $? != 0 \|\| $execution_error = true ]]
3776	then
3777
3778	# ABBRUCH BEI LAUFZEITFEHLER
3779	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3780	printf "\n +++ runtime error occured"
3781	locat=execution
3782	exit
3783	else
3784	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3785	printf "\n$striche\n *** execution finished \n"
3786
3787	# Stop the dvr streaming server and process the dvr output in order
3788	# to create dvrs- and html-files containing all streams
3789	if [[ "$dvrserver_id" != "" ]]
3790	then
3791	kill $dvrserver_id
3792	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3793
3794	# If there is a directory, data have been output by the
3795	# streaming server. Otherwise, user has chosen dvrp_output=local
3796	if [[ -d DATA_DVR ]]
3797	then
3798
3799	# Add the current dvr configuration file to the dvr output
3800	# directory
3801	cp .dvrserver.config DATA_DVR
3802
3803	# Process the dvr output (option -s for also generating
3804	# sequence mode data)
3805	process_dvr_output -d DATA_DVR -f $fname -s
3806
3807	else
3808
3809	# Process the local output
3810	process_dvr_output -l -d DATA_DVR -f $fname
3811
3812	fi
3813
3814	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3815	then
3816
3817	# Process dvr output generated in local mode (dvrp_output=local)
3818	process_dvr_output -l -d DATA_DVR -f $fname
3819
3820	fi
3821	fi
3822
3823
3824
3825	# Call of combine_plot_fields in order to merge single files written
3826	# by each PE into one file.
3827	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3828	then
3829	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3830	printf "\n 2d- and/or 3d-data may be incomplete!"
3831	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3832	elif [[ "$combine_plot_fields" == true ]]
3833	then
3834	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3835	combine_plot_fields${block}.x
3836	else
3837	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3838	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3839	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3840	fi
3841
3842
3843
3844	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3845	(( i = 0 ))
3846	while (( i < ioc ))
3847	do
3848	(( i = i + 1 ))
3849	if (( i == 1 ))
3850	then
3851	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3852	fi
3853	printf "\n >>> ${out_command[$i]}"
3854	eval ${out_command[$i]}
3855	if (( i == ioc ))
3856	then
3857	printf "\n$striche\n"
3858	fi
3859	done
3860
3861
3862	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3863	if [[ $do_trace = true ]]
3864	then
3865	printf "\n\n"
3866	ls -al
3867	fi
3868
3869
3870
3871	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3872	(( i = 0 ))
3873	while (( i < iout ))
3874	do
3875	(( i = i + 1 ))
3876	if (( i == 1 ))
3877	then
3878	printf "\n\n *** saving OUTPUT-files:\n$striche"
3879	fi
3880
3881	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3882	files_for_pes=false; filetyp=file
3883	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3884	then
3885	files_for_pes=true; filetyp=directory
3886	actionout[$i]=""
3887	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3888	then
3889	actionout[$i]=""
3890	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3891	then
3892	files_for_pes=true; filetyp=directory
3893	actionout[$i]="ar"
3894	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3895	then
3896	actionout[$i]="ar"
3897	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3898	then
3899	files_for_pes=true; filetyp=directory
3900	actionout[$i]="fl"
3901	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3902	then
3903	actionout[$i]="fl"
3904	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3905	then
3906	files_for_pes=true; filetyp=directory
3907	actionout[$i]="tr"
3908	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3909	then
3910	actionout[$i]="tr"
3911	fi
3912
3913	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3914	then
3915	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3916	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3917	then
3918	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3919	else
3920
3921
3922	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3923	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3924	# REMOTE-RECHNUNGEN
3925	if [[ "${actionout[$i]}" = tr ]]
3926	then
3927	if [[ $localhost != $fromhost ]]
3928	then
3929	if [[ $files_for_pes = false ]]
3930	then
3931	cps=""
3932	cst=""
3933	else
3934	cps=-c
3935	cst="/"
3936	fi
3937	if [[ $localhost = nech ]]
3938	then
3939
3940	# TRANSFER IN EIGENSTAENDIGEM JOB
3941	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3942	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3943	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3944	if [[ $files_for_pes = false ]]
3945	then
3946	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3947	else
3948	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3949	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3950	fi
3951
3952	echo "set -x" > transfer_${localout[$i]}
3953	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3954
3955	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3956	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3957	printf "\n or higher cycle\n"
3958	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3959
3960	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3961
3962	if [[ $localhost = nech ]]
3963	then
3964	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3965	else
3966	if [[ "$LOGNAME" = b323013 ]]
3967	then
3968	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3969	else
3970	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3971	fi
3972	fi
3973
3974	else
3975
3976	# TRANSFER INNERHALB DIESES JOBS
3977	transfer_failed=false
3978	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3979	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3980	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3981	[[ $? != 0 ]] && transfer_failed=true
3982
3983	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3984	# LOKALER MASCHINE ANLEGEN
3985	if [[ $transfer_failed = true ]]
3986	then
3987	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3988	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3989
3990	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3991	# ANLEGEN.
3992	eval local_catalog=${pathout[$i]}
3993	if [[ ! -d $local_catalog ]]
3994	then
3995	printf " *** local directory does not exist. Trying to create:\n"
3996	printf " $local_catalog \n"
3997	mkdir -p $local_catalog
3998	fi
3999	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4000	transfer_problems=true
4001	fi
4002	fi
4003	else
4004
4005	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4006	actionout[$i]=""
4007	fi
4008	fi
4009
4010
4011	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4012	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4013	# REMOTE-RECHNUNGEN
4014	if [[ "${actionout[$i]}" = tra ]]
4015	then
4016	if [[ $localhost != $fromhost ]]
4017	then
4018	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4019	then
4020
4021	# TRANSFER IN EIGENSTAENDIGEM JOB
4022	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4023	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4024	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4025	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4026
4027	echo "set -x" > transfer_${localout[$i]}
4028	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4029
4030	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4031	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4032	printf "\n or higher cycle\n"
4033	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4034
4035	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4036
4037	if [[ $localhost = nech ]]
4038	then
4039	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4040	else
4041	if [[ $LOGNAME = b323013 ]]
4042	then
4043	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4044	else
4045	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4046	fi
4047	fi
4048
4049	else
4050
4051	# TRANSFER INNERHALB DIESES JOBS
4052	transfer_failed=false
4053	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4054	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4055	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4056	[[ $? != 0 ]] && transfer_failed=true
4057
4058	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4059	# LOKALER MASCHINE ANLEGEN
4060	if [[ $transfer_failed = true ]]
4061	then
4062	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4063	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4064
4065	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4066	# ANLEGEN
4067	eval local_catalog=${pathout[$i]}
4068	if [[ ! -d $local_catalog ]]
4069	then
4070	printf " *** local directory does not exist. Trying to create:\n"
4071	printf " $local_catalog \n"
4072	mkdir -p $local_catalog
4073	fi
4074
4075	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4076	transfer_problems=true
4077	fi
4078	fi
4079	else
4080
4081	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4082	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4083	actionout[$i]=a
4084	fi
4085	fi
4086
4087
4088	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4089	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4090	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4091	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4092	if [[ "${actionout[$i]}" = fl ]]
4093	then
4094	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4095	chmod g+rx $tmp_data_catalog
4096	if [[ $files_for_pes = false ]]
4097	then
4098	printf "\n >>> OUTPUT: ${localout[$i]} to"
4099	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4100	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4101	else
4102	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4103	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4104	mkdir $tmp_data_catalog/${frelout[$i]}
4105	cd ${localout[$i]}
4106	for file in $(ls *)
4107	do
4108	ln -f $file $tmp_data_catalog/${frelout[$i]}
4109	done
4110	cd $TEMPDIR
4111	fi
4112
4113
4114	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4115	if [[ $store_on_archive_system = true ]]
4116	then
4117
4118	if [[ $archive_system = asterix ]]
4119	then
4120	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4121	if [[ $files_for_pes = false ]]
4122	then
4123	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4124	else
4125	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4126	fi
4127	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4128	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4129	echo "then" >> archive_${frelout[$i]}
4130	echo " do_stageout=false" >> archive_${frelout[$i]}
4131	echo "else" >> archive_${frelout[$i]}
4132	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4133	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4134	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4135	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4136	if [[ $files_for_pes = false ]]
4137	then
4138	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4139	else
4140	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4141	fi
4142	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4143	echo "fi" >> archive_${frelout[$i]}
4144	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4145	elif [[ $archive_system = DMF ]]
4146	then
4147	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4148	if [[ $files_for_pes = false ]]
4149	then
4150	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4151	locat=DMF
4152	exit
4153	else
4154	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4155	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4156	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4157	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4158	fi
4159	elif [[ $archive_system = tivoli ]]
4160	then
4161	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4162	if [[ $files_for_pes = false ]]
4163	then
4164	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4165	echo "set -x" >> archive_${frelout[$i]}
4166	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4167	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4168	else
4169
4170	echo "set -x" >> archive_${frelout[$i]}
4171	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4172	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4173	cd $tmp_data_catalog
4174	all_files=`ls -1 ${frelout[$i]}/*`
4175	cd - > /dev/null
4176	(( inode = 0 ))
4177	(( tp1 = tasks_per_node + 1 ))
4178	while (( inode < nodes ))
4179	do
4180	# echo "*** all_files = \"$all_files\" "
4181	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4182	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4183	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4184	# echo "*** files = \"$files\" "
4185	# echo "*** all_files = \"$all_files\" "
4186	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4187	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4188	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4189	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4190	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4191	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4192	(( inode = inode + 1 ))
4193	done
4194	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4195	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4196	fi
4197	elif [[ $archive_system = ut ]]
4198	then
4199	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4200	if [[ $files_for_pes = false ]]
4201	then
4202	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4203	echo "set -x" >> archive_${frelout[$i]}
4204	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4205	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4206	else
4207
4208	echo "set -x" >> archive_${frelout[$i]}
4209	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4210	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4211	cd $tmp_data_catalog
4212	all_files=`ls -1 ${frelout[$i]}/*`
4213	cd - > /dev/null
4214	(( inode = 0 ))
4215	(( tp1 = tasks_per_node + 1 ))
4216	while (( inode < nodes ))
4217	do
4218	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4219	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4220	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4221	(( inode = inode + 1 ))
4222	done
4223	fi
4224	elif [[ $archive_system = none ]]
4225	then
4226	printf " +++ archiving on $localhost not available!\n"
4227	fi
4228
4229	if [[ $archive_system != none ]]
4230	then
4231	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4232	then
4233	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4234	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4235	elif [[ $localhost = nech ]]
4236	then
4237	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4238	fi
4239	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4240	fi
4241	else
4242	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4243	fi
4244
4245
4246	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4247	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4248	if [[ $files_for_pes = false ]]
4249	then
4250	cat /dev/null > ${pathout[$i]}
4251	else
4252	mkdir -p ${pathout[$i]}
4253	fi
4254
4255	fi
4256
4257
4258	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4259	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4260	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4261	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4262	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4263	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4264	if [[ "${actionout[$i]}" = ar ]]
4265	then
4266	if [[ $files_for_pes = false ]]
4267	then
4268	printf "\n >>> OUTPUT: ${localout[$i]} to"
4269	printf "\n ${pathout[$i]}"
4270	printf "\n File will be copied to archive-system ($archive_system) !\n"
4271	else
4272	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4273	printf "\n ${pathout[$i]}"
4274	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4275	fi
4276	mv ${localout[$i]} ${frelout[$i]}
4277
4278	file_saved=false
4279
4280	if [[ $archive_system = asterix ]]
4281	then
4282	do_stageout=true
4283	(( stageout_anz = 0 ))
4284	while [[ $do_stageout = true ]]
4285	do
4286	if [[ $files_for_pes = false ]]
4287	then
4288	stageout ${frelout[$i]} > STAGE_OUTPUT
4289	else
4290	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4291	fi
4292	cat STAGE_OUTPUT
4293	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4294	then
4295	file_saved=true
4296	do_stageout=false
4297	else
4298	if [[ $files_for_pes = false ]]
4299	then
4300	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4301	else
4302	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4303	fi
4304	(( stageout_anz = stageout_anz + 1 ))
4305	if (( stageout_anz == 10 ))
4306	then
4307	printf "\n +++ stoped after 10 unsuccessful tries!"
4308	archive_save=false
4309	do_stageout=false
4310	else
4311	printf "\n *** new try to store on archive after 15 min:"
4312	sleep 900
4313	fi
4314	fi
4315	done
4316	elif [[ $archive_system = DMF ]]
4317	then
4318	if [[ $files_for_pes = false ]]
4319	then
4320	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4321	locat=DMF
4322	exit
4323	else
4324	rm -rf $ARCHIVE/${frelout[$i]}
4325	cp -r ${frelout[$i]} $ARCHIVE
4326	fi
4327	file_saved=true
4328	elif [[ $archive_system = tivoli ]]
4329	then
4330	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4331	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4332	# GELEGT WERDEN
4333	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4334	chmod g+rx $tmp_data_catalog
4335	if [[ $files_for_pes = false ]]
4336	then
4337	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4338	else
4339	mkdir $tmp_data_catalog/${frelout[$i]}
4340	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4341	fi
4342
4343	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4344	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4345	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4346	if [[ $files_for_pes = false ]]
4347	then
4348	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4349	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4350	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4351	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4352	else
4353	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4354	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4355	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4356	fi
4357
4358	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4359	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4360	file_saved=true
4361
4362	elif [[ $archive_system = ut ]]
4363	then
4364	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4365	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4366	# GELEGT WERDEN
4367	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4368	chmod g+rx $tmp_data_catalog
4369	if [[ $files_for_pes = false ]]
4370	then
4371	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4372	else
4373	mkdir $tmp_data_catalog/${frelout[$i]}
4374	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4375	fi
4376
4377	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4378	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4379	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4380	if [[ $files_for_pes = false ]]
4381	then
4382	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4383	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4384	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4385	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4386	else
4387	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4388	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4389	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4390	fi
4391
4392	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4393	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4394	file_saved=true
4395
4396	else
4397	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4398	archive_save=false
4399	fi
4400	if [[ $file_saved = true ]]
4401	then
4402	if [[ $files_for_pes = false ]]
4403	then
4404	cat /dev/null > ${pathout[$i]}
4405	else
4406	mkdir -p ${pathout[$i]}
4407	fi
4408	fi
4409	fi
4410
4411	# APPEND AUF LOKALER MASCHINE
4412	if [[ "${actionout[$i]}" = "a" ]]
4413	then
4414	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4415	then
4416	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4417	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4418	else
4419	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4420	cat ${localout[$i]} >> ${pathout[$i]}
4421	fi
4422	fi
4423
4424	# KOPIEREN AUF LOKALER MASCHINE
4425	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4426	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4427	then
4428
4429	# KOPIEREN AUF EINPROZESSORMASCHINE
4430	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4431	then
4432	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4433	if [[ $link_local_output = true ]]
4434	then
4435	printf " using ln -f\n"
4436	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4437	fi
4438	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4439	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4440	then
4441	if [[ $link_local_output = true ]]
4442	then
4443	printf " ln failed, using cp...\n"
4444	fi
4445	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4446	fi
4447	else
4448	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4449	if [[ $link_local_output = true ]]
4450	then
4451	printf " using ln -f\n"
4452	ln -f ${localout[$i]} ${pathout[$i]}
4453	fi
4454	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4455	if [[ ! -f "${pathout[$i]}" ]]
4456	then
4457	if [[ $link_local_output = true ]]
4458	then
4459	printf " ln failed, using cp...\n"
4460	fi
4461	cp ${localout[$i]} ${pathout[$i]}
4462	fi
4463	fi
4464
4465	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4466	then
4467
4468	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4469	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4470	# WIRD DANN KOPIERT
4471	# PER MOVE UMBENANNT WERDEN
4472	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4473	if [[ $link_local_output = true ]]
4474	then
4475	printf " using ln -f\n"
4476	mkdir ${pathout[$i]}
4477	cd ${localout[$i]}
4478	for file in $(ls *)
4479	do
4480	ln -f $file ${pathout[$i]}
4481	done
4482	cd $TEMPDIR
4483	fi
4484	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4485	if [[ ! -f "${pathout[$i]}/_0000" ]]
4486	then
4487	if [[ $link_local_output = true ]]
4488	then
4489	printf " ln failed for .../_0000, using cp...\n"
4490	fi
4491	cp -r ${localout[$i]} ${pathout[$i]}
4492	fi
4493
4494	fi
4495	fi
4496	done
4497	if (( i != 0 ))
4498	then
4499	if [[ $transfer_problems = true ]]
4500	then
4501	printf "\n$striche\n *** OUTPUT-files saved"
4502	printf "\n +++ WARNING: some data transfers failed! \n"
4503	else
4504	printf "\n$striche\n *** all OUTPUT-files saved \n"
4505	fi
4506	fi
4507
4508
4509	# EVENTUELL FOLGEJOB STARTEN
4510	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4511	if [[ -f CONTINUE_RUN ]]
4512	then
4513
4514	if [[ $archive_save = true ]]
4515	then
4516
4517	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4518	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4519	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4520	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4521	# HANDEN
4522	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4523	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4524	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4525	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4526	then
4527	mc=`echo $mc \| sed 's/#/f/g'`
4528	fi
4529
4530
4531	# JOB STARTEN
4532	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4533	echo " $mc"
4534	printf "\n$striche\n"
4535	if [[ $localhost != $fromhost ]]
4536	then
4537
4538	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4539	then
4540	echo "*** ssh will be used to initiate restart-runs!"
4541	echo " return_addres=\"$return_addres\" "
4542	echo " return_username=\"$return_username\" "
4543	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4544	then
4545	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4546	else
4547	if [[ $localhost = ibmkisti ]]
4548	then
4549	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4550	else
4551	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4552	fi
4553	fi
4554	else
4555	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4556	locat=restart; exit
4557	fi
4558
4559	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4560	# DER AKTUELLE JOB ENDET
4561	if [[ $queue = special1q ]]
4562	then
4563	sleep 120
4564	else
4565	sleep 30
4566	fi
4567
4568	else
4569
4570	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4571	# RUFEN WERDEN, AUSSER AUF lcfimm
4572	cd $LOCAL_PWD
4573	if [[ $localhost = lcfimm ]]
4574	then
4575	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4576	else
4577	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4578	fi
4579	cd - > /dev/null
4580	fi
4581	printf "\n$striche\n *** restart-run initiated \n"
4582
4583
4584	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4585	# GEHOLT WORDEN SIND, LOESCHEN
4586	(( i = 0 ))
4587	while (( i < iin ))
4588	do
4589	(( i = i + 1 ))
4590	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4591	then
4592	rm -r $tmp_data_catalog/${frelin[$i]}
4593	fi
4594	done
4595
4596	else
4597
4598	printf "\n +++ no restart-run possible, since errors occured"
4599	printf "\n during the archive process"
4600	fi
4601
4602	fi
4603
4604
4605
4606	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4607	if [[ "$email_notification" != "none" ]]
4608	then
4609
4610	if [[ $localhost != $fromhost ]]
4611	then
4612	if [[ -f CONTINUE_RUN ]]
4613	then
4614	echo "PALM restart run necessary" > email_text
4615	echo "description header of actual run:" >> email_text
4616	cat CONTINUE_RUN >> email_text
4617	echo "mrun-command to restart:" >> email_text
4618	echo "$mc" >> email_text
4619	else
4620	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4621	fi
4622	mail $email_notification < email_text
4623	printf "\n *** email notification sent to \"$email_notification\" "
4624	fi
4625	fi
4626
4627
4628
4629	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4630	cd $HOME
4631	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4632
4633	else
4634
4635
4636	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4637	# CHENDE AKTIONEN DURCHGEFUEHRT
4638
4639	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4640	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4641	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4642	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4643	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4644	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4645	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4646	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4647	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4648	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4649	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4650	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4651	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4652	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4653	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4654	if [[ $use_openmp = true ]]
4655	then
4656	mrun_com=${mrun_com}" -O $threads_per_task"
4657	fi
4658	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4659	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4660	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4661	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4662	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4663	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4664	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4665	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4666	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4667	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4668	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4669	if [[ $do_remote = true ]]
4670	then
4671	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4672	fi
4673
4674
4675	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4676	jobfile=jobfile.$RANDOM
4677
4678
4679	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4680	echo "mkdir $TEMPDIR" >> $jobfile
4681	echo "cd $TEMPDIR" >> $jobfile
4682
4683
4684	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4685	if [[ $do_trace = true ]]
4686	then
4687	echo "set -x" >> $jobfile
4688	else
4689	echo "set +vx" >> $jobfile
4690	fi
4691
4692
4693	# initialize the environment and load modules
4694	if [[ "$init_cmds" != "" ]]
4695	then
4696	echo "$init_cmds" >> $jobfile
4697	fi
4698	if [[ "$module_calls" != "" ]]
4699	then
4700	echo "$module_calls" >> $jobfile
4701	fi
4702
4703
4704	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4705	# DATEI FUER DEN JOB
4706	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4707	then
4708
4709	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4710	# KOPIEREN
4711	if [[ $restart_run != true ]]
4712	then
4713	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4714	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4715	fi
4716
4717	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4718	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4719	echo "set -x" >> $jobfile
4720	if [[ $host = $localhost ]]
4721	then
4722	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4723	else
4724	if [[ $host != ibmkisti ]]
4725	then
4726	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4727	else
4728	# on KISTI's IBM firewall is only opened on interactive node
4729	echo "localdir=\`pwd\`" >> $jobfile
4730	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4731	fi
4732	fi
4733	echo "export SOURCES_COMPLETE=true" >> $jobfile
4734
4735	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4736	# ARBEITSVERZEICHNIS VERSCHIEBEN
4737	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4738	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4739	echo "execute_mrun=true" >> $jobfile
4740	echo " " >> $jobfile
4741
4742	else
4743
4744	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4745	# SOWIE GEGEBENENFALLS DES MAKEFILES
4746	if [[ $do_compile = true ]]
4747	then
4748
4749	source_catalog=SOURCES_FOR_RUN_$fname
4750
4751	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4752	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4753	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4754	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4755	echo "export SOURCES_COMPLETE=true" >> $jobfile
4756	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4757
4758	for filename in $source_list
4759	do
4760	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4761	echo "cat > $filename << \"%END%\"" >> $jobfile
4762	cat $source_catalog/$filename >> $jobfile
4763	echo " " >> $jobfile
4764	echo "%END%" >> $jobfile
4765	echo " " >> $jobfile
4766	done
4767
4768	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4769	echo "cat > Makefile << \"%END%\"" >> $jobfile
4770	cat $source_catalog/Makefile >> $jobfile
4771	echo " " >> $jobfile
4772	echo "%END%" >> $jobfile
4773	echo " " >> $jobfile
4774
4775	echo "cd - > /dev/null" >> $jobfile
4776
4777	fi
4778
4779
4780	# ABSPEICHERN DER KONFIGURATIONSDATEI
4781	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4782	# Lines with #$ coming from the svn keyword substitution are
4783	# removed from the config file in order to avoid problems
4784	# with the SGE batch system
4785	echo "cat > $config_file << \"%END%\"" >> $jobfile
4786	if [[ $host = lckyuh ]]
4787	then
4788	# no cross compiler on compute node
4789	sed 's/frtpx/frt/g' $config_file >> $jobfile
4790	else
4791	sed 's/#$.*//g' $config_file >> $jobfile
4792	fi
4793	echo "%END%" >> $jobfile
4794	echo " " >> $jobfile
4795
4796
4797	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4798	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4799	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4800	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4801	echo "%END%" >> $jobfile
4802	echo "chmod u+x $mrun_script_name" >> $jobfile
4803	echo "execute_mrun=true" >> $jobfile
4804	echo " " >> $jobfile
4805
4806	fi
4807
4808
4809	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4810	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4811	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4812	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4813	if [[ $do_remote = true ]]
4814	then
4815	(( i = 0 ))
4816	while (( i < iin ))
4817	do
4818	(( i = i + 1 ))
4819	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4820	if [[ "${transin[$i]}" = job ]]
4821	then
4822	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4823	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4824	echo " " >> $jobfile
4825	echo "%END%" >> $jobfile
4826	else
4827	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4828	fi
4829
4830	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4831	echo "if [[ \$? = 1 ]]" >> $jobfile
4832	echo "then" >> $jobfile
4833	echo " echo \" \" " >> $jobfile
4834	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4835	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4836	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4837	echo " execute_mrun=false" >> $jobfile
4838	echo "fi" >> $jobfile
4839	done
4840	fi
4841
4842	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4843	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4844	echo "LOCAL_PWD=$working_directory" >> $jobfile
4845	echo "export LOCAL_PWD" >> $jobfile
4846
4847	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4848	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4849	echo "export LOCAL_MRUN_PATH" >> $jobfile
4850
4851	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4852	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4853	then
4854	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4855	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4856	then
4857	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4858	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4859	fi
4860
4861	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4862	echo "set -x" >> $jobfile
4863	echo "queue=$queue" >> $jobfile
4864	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4865	echo 'ls -al; echo `pwd`' >> $jobfile
4866	echo "cd \$HOME" >> $jobfile
4867	echo "rm -rf $TEMPDIR" >> $jobfile
4868
4869
4870
4871
4872	# JOB PER SUBJOB STARTEN
4873	if [[ $silent = false ]]
4874	then
4875	printf "\n "
4876	else
4877	printf "\n\n"
4878	fi
4879
4880	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4881	rm -rf $jobfile
4882
4883
4884	fi # ENDE REMOTE-TEIL
4885
4886
4887
4888	# ENDE DER PROZEDUR

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