Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 1100

Last change on this file since 1100 was 1100, checked in by raasch, 12 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 177.3 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1100 2013-02-10 01:58:22Z raasch $
29	#
30	# 1099 2013-02-10 01:47:43Z raasch
31	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
32	# and for Forwind cluster (lcflow)
33	# small further adjustments for lckyut
34	#
35	# 1094 2013-02-03 01:52:12Z raasch
36	# explicit ssh/scp port can be set in config file with environment variable
37	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
38	# decalpha parts (yonsei) removed
39	#
40	# 2013-02-02 07:06:13Z raasch
41	# adjustments for Kyushu-University computing center (lckyut - tatara)
42	#
43	# 1083 2013-01-04 10:22:09Z maronga
44	# bugfix in parameter file check (read %cpp_options was missing)
45	#
46	# 1069 2012-11-28 16:18:43Z maronga
47	# bugfix: coupling mode was always set to mpi2, typos removed
48	#
49	# 1058 2012-11-21 07:00:35Z raasch
50	# Intel inspector (inspxe) is given the number of PEs instead of the number of
51	# nodes
52	#
53	# 1046 2012-11-09 14:38:45Z maronga
54	# code put under GPL (PALM 3.9)
55	#
56	# 21/03/94 - Siggi - first version finished
57	# 03/03/94 - Siggi - script development started
58	#
59	#--------------------------------------------------------------------------------#
60	# mrun - script for running PALM jobs
61	#--------------------------------------------------------------------------------#
62
63
64
65	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
66
67	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
68	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
69	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
70
71	AddFilenames=""
72	additional_conditions=""
73	add_source_path=""
74	afname=""
75	archive_save=true
76	archive_system=none
77	check_namelist_files=true
78	combine_plot_fields=true
79	compiler_name=""
80	cond1=""
81	cond2=""
82	config_file=.mrun.config
83	coupled_dist=""
84	coupled_mode="mpi1"
85	cpp_opts=""
86	cpp_options=""
87	cpumax=0
88	cpurest=0
89	delete_temporary_catalog=true
90	do_batch=false
91	do_compile=true
92	do_remote=false
93	do_stagein=true
94	do_stageout=true
95	do_trace=false
96	email_notification="none"
97	exclude=""
98	executable=""
99	execution_error=false
100	fimm=false
101	fname=test
102	fromhost=""
103	global_revision=""
104	group_number=none
105	host=""
106	host_file=""
107	hp=""
108	ignore_archive_error=false
109	input_list=""
110	interpreted_config_file=""
111	job_catalog="~/job_queue"
112	job_on_file=""
113	keep_data_from_previous_run=false
114	link_local_input=false
115	link_local_output=false
116	localhost_realname=$(hostname)
117	local_compile=false
118	local_dvrserver_running=.FALSE.
119	locat=normal
120	mainprog=""
121	makefile=""
122	max_par_io_str=""
123	mc=$0
124	while [[ $(echo $mc \| grep -c "/") != 0 ]]
125	do
126	mc=`echo $mc \| cut -f2- -d"/"`
127	done
128	module_calls=""
129	mrun_script_name=$mc
130	netcdf_inc=""
131	netcdf_lib=""
132	netcdf_support=false
133	node_usage=default
134	numprocs=""
135	numprocs_atmos=0
136	numprocs_ocean=0
137	OOPT=""
138	openmp=false
139	output_list=""
140	package_list=""
141	punkte="..........................................................."
142	queue=none
143	read_from_config=""
144	restart_run=false
145	if [[ `hostname` = rte10 ]]
146	then
147	return_addres=133.5.185.60
148	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
149	elif [[ `hostname` = climate0 ]]
150	then
151	return_addres=165.132.26.68
152	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
153	elif [[ `hostname` = urban00 ]]
154	then
155	return_addres=147.46.30.151
156	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
157	else
158	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
159	fi
160	return_password=""
161	return_username=$LOGNAME
162	remotecall=false
163	remote_username=""
164	run_coupled_model=false
165	run_mode=""
166	scirocco=false
167	store_on_archive_system=false
168	striche=" ----------------------------------------------------------------------------"
169	silent=false
170	source_list=""
171	source_path=SOURCE
172	tasks_per_node=""
173	threads_per_task=1
174	tmpcreate=false
175	tmp_data_catalog=""
176	transfer_problems=false
177	usern=$LOGNAME
178	use_openmp=false
179	working_directory=`pwd`
180	TOPT=""
181	XOPT=""
182	zeit=$( date \| cut -c 12-19 )
183
184	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
185	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
186
187	typeset -R30 calltime
188	typeset -L20 spalte1
189	typeset -L40 spalte2
190	typeset -L60 spalte3
191	typeset -L35 string1=`date`
192	typeset -L12 string2=$usern
193	typeset -L12 string3=$localhost_realname
194	typeset -L12 string4
195	typeset -L12 string5
196	typeset -L30 version="MRUN 2.0 Rev$Rev: 1100 $"
197
198
199
200	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
201	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
202
203	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
204	# EXPORTIERT WERDEN
205	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
206	export group_number input_list memory numprocs output_list queue run_mode
207
208
209
210	# FEHLERBEHANDLUNG
211	# BEI EXIT:
212	trap 'rm -rf $working_directory/tmp_mrun
213	if [[ $locat != localhost ]]
214	then
215	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
216	# then
217	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
218	#MRUN-calls on $localhost
219	#
220	#date and time user localhost remotehost termination mrun-command
221	#--------------------------------------------------------------------------------------------------------------------
222	#%STATEND%
223	# chmod 666 ${mrun_path}/statistik/mrun_statistik
224	# fi
225	#
226	# # EINTRAG IN DIE STATISTIK-DATEI
227	# string4=$host
228	# string5=$locat
229	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
230	# then
231	# if [[ $do_batch = true ]]
232	# then
233	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
234	# else
235	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
236	# fi
237	# fi
238	echo " " > /dev/null
239	fi
240
241	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
242	then
243
244	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
245	(( i = 0 ))
246	while (( i < iec ))
247	do
248	(( i = i + 1 ))
249	printf "\n *** Execution of ERROR-command:\n"
250	printf " >>> ${err_command[$i]}\n"
251	eval ${err_command[$i]}
252	done
253	if [[ -n $interpreted_config_file ]] then
254	rm -rf $interpreted_config_file
255	fi
256	if [[ -n .mrun_environment ]] then
257	rm -rf .mrun_environment
258	fi
259	if [[ $tmpcreate = true ]]
260	then
261	printf "\n *** Contents of \"$TEMPDIR\":\n"
262	ls -al; cd
263	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
264	fi
265	if [[ "$dvrserver_id" != "" ]]
266	then
267	echo "+++ killing dvrserver_id=$dvrserver_id"
268	kill $dvrserver_id
269	fi
270	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
271	then
272	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
273	fi
274	printf "\n\n+++ MRUN killed \n\n"
275	elif [[ $locat != control_c ]]
276	then
277	printf "\n\n --> all actions finished\n\n"
278	printf " Bye, bye $usern !!\n\n"
279	fi' exit
280
281
282	# BEI TERMINAL-BREAK:
283	trap 'rm -rf $working_directory/tmp_mrun
284	rm -rf $working_directory/tmp_check_namelist_files
285	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
286	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
287	then
288	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
289	fi
290	if [[ "$dvrserver_id" != "" ]]
291	then
292	echo "+++ killing dvrserver_id=$dvrserver_id"
293	kill $dvrserver_id
294	fi
295	printf "\n+++ MRUN killed by \"^C\" \n\n"
296	locat=control_c
297	exit
298	' 2
299
300
301	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
302	# BEEN SET
303	if [[ "$PALM_BIN" = "" ]]
304	then
305	printf "\n +++ environment variable PALM_BIN has not been set"
306	printf "\n please set it to the directory where the PALM scripts are located"
307	locat=palm_bin; exit
308	fi
309	export PATH=$PALM_BIN:$PATH
310
311
312
313	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
314	# FUER FOLGEJOBS BENOETIGT WIRD
315	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
316	do
317	case $option in
318	(a) afname=$OPTARG;;
319	(A) store_on_archive_system=true; mc="$mc -A";;
320	(b) do_batch=true; mc="$mc -b";;
321	(B) delete_temporary_catalog=false; mc="$mc -B";;
322	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
323	(C) restart_run=true; mc="$mc -C";;
324	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
325	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
326	(F) job_on_file="-D"; mc="$mc -F";;
327	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
328	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
329	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
330	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
331	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
332	(I) ignore_archive_error=true; mc="$mc -I";;
333	(k) keep_data_from_previous_run=true; mc="$mc -k";;
334	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
335	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
336	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
337	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
338	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
339	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
340	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
341	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
342	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
343	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
344	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
345	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
346	(S) read_from_config=false; mc="$mc -S";;
347	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
348	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
349	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
350	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
351	(v) silent=true; mc="$mc -v";;
352	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
353	(x) do_trace=true;set -x; mc="$mc -x";;
354	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
355	(y) ocean_file_appendix=true; mc="$mc -y";;
356	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
357	(z) check_namelist_files=false; mc="$mc -z";;
358	(Z) combine_plot_fields=false; mc="$mc -Z";;
359	(\?) printf "\n +++ unknown option $OPTARG \n"
360	printf "\n --> type \"$0 ?\" for available options \n"
361	locat=parameter;exit;;
362	esac
363	done
364
365
366	# EVTL. POSITIONSPARAMETER EINLESEN
367	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
368	shift OPTIND-1
369
370
371	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
372	if [[ "$1" = "?" ]]
373	then
374	(printf "\n *** mrun can be called as follows:\n"
375	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
376	printf "\n Description of available options:\n"
377	printf "\n Option Description Default-Value"
378	printf "\n -a base name of input files equiv. -d"
379	printf "\n -A archiving when using file-attribute fl"
380	printf "\n -b batch-job on local machine ---"
381	printf "\n -B do not delete temporary directory at end ---"
382	printf "\n -c configuration file .mrun.config"
383	printf "\n -d base name of files attached to program test"
384	printf "\n -D preprocessor(cpp)-directives \"\" "
385	printf "\n -F create remote job file only ---"
386	printf "\n -h execution host $localhost_realname"
387	printf "\n -i INPUT control list \"\" "
388	printf "\n -I archiving errors of previous batch-jobs"
389	printf "\n will be ignored"
390	printf "\n -k keep data from previous run"
391	printf "\n -K additional conditions for controling"
392	printf "\n usage of conditional code and"
393	printf "\n env-variables in configuration file \"\" "
394	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
395	printf "\n -M Makefile name Makefile"
396	printf "\n -n node usage (shared/not_shared) depending on -h"
397	printf "\n -o OUTPUT control list \"\" "
398	printf "\n -O use OpenMP ---"
399	printf "\n -p software package list \"\" "
400	printf "\n -q queue \"$queue\" "
401	printf "\n -r run control list (combines -i -o) \"\" "
402	printf "\n -s filenames of routines to be compiled \"\" "
403	printf "\n must end with .f, .f90, .F, or .c !"
404	printf "\n use \"..\" for more than one file and wildcards"
405	printf "\n -s LM compiles all locally modified files"
406	printf "\n -S config file interpreted by shellscript ---"
407	printf "\n -t allowed cpu-time in seconds (batch) 0"
408	printf "\n -T tasks per node depending on -h"
409	printf "\n -u username on remote machine \"\" "
410	printf "\n -v no prompt for confirmation ---"
411	printf "\n -w maximum parallel io streams as given by -X"
412	printf "\n -x tracing of mrun for debug purposes ---"
413	printf "\n -X # of processors (on parallel machines) 1"
414	printf "\n -y add appendix \"_O\" to all local output"
415	printf "\n files (ocean precursor runs followed by"
416	printf "\n coupled atmosphere-ocean runs) ---"
417	printf "\n -Y run coupled model, \"#1 #2\" with"
418	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
419	printf "\n -z disable a priori parameter file check ---"
420	printf "\n -Z skip combine_plot_fields at the end of "
421	printf "\n the simulation ---"
422	printf "\n "
423	printf "\n Possible values of positional parameter <modus>:"
424	printf "\n \"?\" - this outline \n\n") \| more
425	exit
426	elif [[ "$1" != "" ]]
427	then
428	printf "\n +++ positional parameter $1 unknown \n"
429	locat=parameter; exit
430	fi
431
432
433
434	# KURZE STARTMELDUNG
435	printf "\n*** $version "
436	printf "\n will be executed. Please wait ..."
437
438
439
440	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
441	if [[ ! -f $config_file ]]
442	then
443	printf "\n\n +++ configuration file: "
444	printf "\n $config_file"
445	printf "\n does not exist"
446	locat=connect; exit
447	fi
448
449
450	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
451	line=""
452	grep "%host_identifier" $config_file > tmp_mrun
453	while read line
454	do
455	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
456	then
457	HOSTNAME=`echo $line \| cut -d" " -s -f2`
458	host_identifier=`echo $line \| cut -d" " -s -f3`
459	if [[ $localhost_realname = $HOSTNAME ]]
460	then
461	localhost=$host_identifier
462	break
463	fi
464	fi
465	done < tmp_mrun
466
467	if [[ "$localhost" = "" ]]
468	then
469	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
470	printf "\n for local host \"$localhost_realname\"."
471	printf "\n Please add line"
472	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
473	printf "\n to the configuration file."
474	locat=localhost; exit
475	fi
476
477
478	# HOSTSPEZIFISCHE VARIABLEN SETZEN
479	case $localhost_realname in
480	(r1\|r2\|h01\|b01) archive_system=tivoli;;
481	(cs*) archive_system=ut;;
482	(fimm.bccs.uib.no) fimm=true;;
483	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
484	(scirocco) scirocco=true;;
485	esac
486
487
488
489	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
490	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
491	[[ "$afname" = "" ]] && afname=$fname
492
493
494	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
495	if [[ "$run_mode" != "" ]]
496	then
497	input_list="$input_list $run_mode"
498	output_list="$output_list $run_mode"
499	fi
500
501
502	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
503	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
504	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
505	# STARTET)
506	if [[ "$fromhost" = "" ]]
507	then
508	fromhost=$localhost
509	fi
510
511
512	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
513	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
514	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
515	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
516	if [[ -n $host && "$host" != $localhost ]]
517	then
518	do_batch=true
519	do_remote=true
520	case $host in
521	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
522	(*) printf "\n"
523	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
524	printf "\n is not available"
525	locat=nqs; (( iec = 0 )); exit;;
526	esac
527	else
528	host=$localhost
529	fi
530
531
532	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
533	if [[ -n $additional_conditions ]]
534	then
535	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
536	cond1=`echo $additional_conditions \| cut -d" " -f1`
537	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
538	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
539	if [[ -n $dummy ]]
540	then
541	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
542	locat=options; exit
543	fi
544	block=_$cond1
545	[[ -n $cond2 ]] && block=${block}_$cond2
546	fi
547
548
549	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
550	if [[ $run_coupled_model = true ]]
551	then
552
553	if [[ -n $coupled_dist ]]
554	then
555
556	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
557	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
558
559	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
560	then
561
562	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
563	printf "\n PEs (total) : $numprocs"
564	printf "\n PEs (atmosphere): $numprocs_atmos"
565	printf "\n PEs (ocean) : $numprocs_ocean"
566	locat=coupling; exit
567
568	fi
569
570	else
571
572	(( numprocs_ocean = $numprocs / 2 ))
573	(( numprocs_atmos = $numprocs / 2 ))
574
575	fi
576	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
577
578	# GET coupled_mode FROM THE CONFIG FILE
579	line=""
580	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
581	while read line
582	do
583	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
584	then
585	coupled_mode="mpi2"
586	fi
587	done < tmp_mrun
588
589	fi
590
591
592	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
593	# ARCHIVIERUNG FEHLGESCHLAGEN IST
594	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
595	then
596	if [[ $ignore_archive_error = false ]]
597	then
598	printf "\n +++ data archiving of previous run failed"
599	printf "\n see directory \~/job_queue on remote machine"
600	locat=archive; exit
601	else
602	printf "\n +++ warning: data archiving in a previous run failed"
603	printf "\n MRUN continues, trying to get backup copy"
604	fi
605	fi
606
607
608	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
609	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
610	mrun_memory=$memory
611	mrun_group_number=$group_number
612	mrun_cpumax=$cpumax
613	mrun_numprocs=$numprocs
614
615
616	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
617	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
618	if [[ "$read_from_config" = false ]]
619	then
620
621	[[ $silent = false ]] && printf "\n Reading the configuration file... "
622	while read zeile
623	do
624	[[ $silent = false ]] && printf "."
625
626
627	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
628	# ERSETZEN
629	eval zeile=\"$zeile\"
630
631
632	# INTERPRETATION DER ZEILE
633	if [[ "$(echo $zeile)" = "" ]]
634	then
635	# LEERZEILE, KEINE AKTION
636	continue
637
638	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
639	then
640
641	# ZEILE IST KOMMENTARZEILE
642	true
643
644	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
645	then
646
647	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
648	zeile=$(echo $zeile \| cut -c2-)
649	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
650	var=`echo $zeile \| cut -d" " -f1`
651	value=`echo $zeile \| cut -d" " -s -f2`
652	for_host=`echo $zeile \| cut -d" " -s -f3`
653	for_cond1=`echo $zeile \| cut -d" " -s -f4`
654	for_cond2=`echo $zeile \| cut -d" " -s -f5`
655
656	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
657	then
658
659	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
660	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
661	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
662
663
664	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
665	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
666	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
667	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
668	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
669	# KONFIGURATIONSDATEI
670	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
671	then
672	eval $var=\$value
673
674	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
675	if [[ $do_trace = true ]]
676	then
677	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
678	fi
679	fi
680
681	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
682	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
683	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
684	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
685	if [[ $var = host ]]
686	then
687	if [[ -n $host && "$host" != $localhost ]]
688	then
689	do_batch=true
690	do_remote=true
691	case $host in
692	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
693	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
694	printf "\n is not available"
695	locat=nqs; exit;;
696	esac
697	else
698	host=$localhost
699	fi
700	fi
701
702	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
703	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
704	# DEN PROGRAMMEN BENOETIGT WERDEN
705	export $var
706	fi
707
708
709
710
711	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
712	then
713
714	# ZEILE DEFINIERT ERROR-KOMMANDO
715	(( iec = iec + 1 ))
716	zeile=$(echo $zeile \| cut -c4-)
717	err_command[$iec]="$zeile"
718
719	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
720	then
721
722	# ZEILE DEFINIERT INPUT-KOMMANDO
723	(( iic = iic + 1 ))
724	zeile=$(echo $zeile \| cut -c4-)
725	in_command[$iic]="$zeile"
726
727	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
728	then
729
730	# ZEILE DEFINIERT OUTPUT-KOMMANDO
731	(( ioc = ioc + 1 ))
732	zeile=$(echo $zeile \| cut -c4-)
733	out_command[$ioc]="$zeile"
734
735	else
736
737	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
738	# s2a: in/out - Feld
739	# s2b: loc - Feld (optional)
740	# s2c: tr/ar - Feld (optional)
741	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
742	s1=`echo $zeile \| cut -d" " -f1`
743	s2=`echo $zeile \| cut -d" " -s -f2`
744	s2a=$(echo $s2 \| cut -d":" -f1)
745	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
746	then
747	s2b=""
748	s2c=""
749	else
750	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
751	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
752	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
753	fi
754	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
755	s3=`echo $zeile \| cut -d" " -f3`
756	s4=`echo $zeile \| cut -d" " -s -f4`
757	s5=`echo $zeile \| cut -d" " -s -f5`
758	s6=`echo $zeile \| cut -d" " -s -f6`
759
760
761	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
762	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
763	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
764	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
765	# HANDEN SEIN MUSS (D.H. s2b = loc)
766	IFSALT="$IFS"; IFS="$IFS:"
767	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
768	then
769	found=false
770	for actual in $input_list
771	do
772	for formal in $s3
773	do
774	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
775	done
776	done
777	if [[ $found = true ]]
778	then
779	(( iin = iin + 1 ))
780	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
781	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
782	extin[$iin]=$s6
783	fi
784	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
785	then
786	found=false
787	for actual in $output_list
788	do
789	for formal in $s3
790	do
791	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
792	done
793	done
794	if [[ $found = true ]]
795	then
796	(( iout = iout + 1 ))
797	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
798	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
799	fi
800	elif [[ "$s2a" != in && "$s2a" != out ]]
801	then
802	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
803	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
804	locat=connect; exit
805	fi
806	IFS="$IFSALT"
807	fi
808	done < $config_file
809
810	else
811
812
813	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
814	[[ $silent = false ]] && printf "..."
815	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
816	export interpreted_config_file=.icf.$RANDOM
817
818
819
820	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
821	# VERFUEGUNG STELLEN
822	cat > .mrun_environment << %%END%%
823	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
824	config_file = '$config_file', do_remote = '$do_remote',
825	do_trace = '$do_trace', host = '$host',
826	input_list = '$input_list', icf = '$interpreted_config_file',
827	localhost = '$localhost', output_list = '$output_list' /
828
829	%%END%%
830
831	if [[ $localhost_realname = "sx-fep" ]]
832	then
833	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
834	else
835
836	if [[ "$host" != $localhost ]]
837	then
838
839	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
840	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
841	if [[ $? != 0 ]]
842	then
843	printf "\n\n +++ no interpret_config found"
844	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
845	locat=interpret_config; exit
846	fi
847	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
848	$interpret_config_executable
849
850	else
851
852	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
853	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
854	then
855	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
856	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
857	locat=interpret_config; exit
858	else
859	interpret_config${block}.x
860	fi
861
862	fi
863	fi
864	rm .mrun_environment
865
866
867	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
868	chmod u+x $interpreted_config_file
869	export PATH=$PATH:.
870	. $interpreted_config_file
871	rm $interpreted_config_file
872
873	fi
874
875
876	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
877	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
878	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
879	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
880	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
881	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
882	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
883
884
885	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
886	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
887	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
888	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
889	if [[ "$SOURCES_COMPLETE" = "" ]]
890	then
891
892	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
893	# VEREINBART WURDE
894	source_path=""
895	line=""
896	grep "%source_path" $config_file > tmp_mrun
897	while read line
898	do
899	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
900	then
901	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
902	then
903	global_source_path=`echo $line \| cut -d" " -f2`
904	fi
905	fi
906	done < tmp_mrun
907
908	line=""
909	found=false
910	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
911	while read line
912	do
913	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
914	then
915	if [[ $found = true ]]
916	then
917	printf "\n\n +++ more than one source path found in configuration file"
918	printf "\n for local host \"$localhost\" "
919	locat=source_path; exit
920	fi
921	source_path=`echo $line \| cut -d" " -f2`
922	found=true
923	fi
924	done < tmp_mrun
925	rm tmp_mrun
926
927	if [[ "$source_path" = "" ]]
928	then
929	if [[ "$global_source_path" != "" ]]
930	then
931	source_path=$global_source_path
932	else
933	printf "\n\n +++ no source path found in configuration file"
934	printf "\n for local host \"$localhost\" "
935	locat=source_path; exit
936	fi
937	fi
938	eval source_path=$source_path
939
940	if [[ ! -d $source_path ]]
941	then
942	printf "\n\n +++ source path \"$source_path\" on local host"
943	printf "\n \"$localhost\" does not exist"
944	locat=source_path; exit
945	fi
946
947	fi
948
949
950	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
951	# DURCH OPTION -G MITGETEILT)
952	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
953	then
954	global_revision=`svnversion $source_path 2>/dev/null`
955	global_revision="Rev: $global_revision"
956	fi
957
958
959	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
960	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
961	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
962	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
963	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
964	if [[ -n $host && "$host" != $localhost ]]
965	then
966	do_batch=true
967	do_remote=true
968	case $host in
969	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
970	(*) printf "\n"
971	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
972	printf "\n is not available"
973	locat=nqs; (( iec = 0 )); exit;;
974	esac
975	else
976	host=$localhost
977	fi
978
979
980	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
981	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
982	then
983
984	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
985	if [[ ! -n $numprocs ]]
986	then
987	printf "\n"
988	printf "\n +++ option \"-K parallel\" requires additional specification"
989	printf "\n of the number of processors to be used by"
990	printf "\n mrun-option \"-X\" or by environment-variable"
991	printf "\n \"numprocs\" in the configuration file"
992	locat=numprocs; (( iec = 0 )); exit
993	fi
994
995	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
996	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
997	# GESAMTPROZESSORANZAHL IST
998	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
999	then
1000	printf "\n"
1001	printf "\n +++ option \"-T\" (tasks per node) is missing"
1002	printf "\n set -T option or define tasks_per_node in the config file"
1003	locat=tasks_per_node; (( iec = 0 )); exit
1004	fi
1005	if [[ $host != lcflow && $host != lcxt5m ]]
1006	then
1007	(( ival = $tasks_per_node ))
1008	(( pes = numprocs ))
1009	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1010	# then
1011	# (( pes = pes - 1 ))
1012	# fi
1013	(( ii = pes / ival ))
1014	if (( pes - ii * ival > 0 ))
1015	then
1016	printf "\n"
1017	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1018	printf "\n divisor of the total number of processors (option \"-X\")"
1019	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1020	locat=tasks_per_node; (( iec = 0 )); exit
1021	fi
1022	fi
1023
1024
1025	# IBMY HAT NUR EINEN KNOTEN
1026	if [[ $host = ibmy ]]
1027	then
1028	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1029	then
1030	printf "\n"
1031	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1032	printf "\n total number of processors (option \"-X\")"
1033	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1034	locat=tasks_per_node; (( iec = 0 )); exit
1035	fi
1036	fi
1037
1038
1039	# SETTINGS FOR SUBJOB-COMMAND
1040	TOPT="-T $tasks_per_node"
1041	OOPT="-O $threads_per_task"
1042
1043	# GESAMTZAHL DER KNOTEN BESTIMMEN
1044	if [[ "$tasks_per_node" != "" ]]
1045	then
1046	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1047	fi
1048
1049	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1050	# SETZEN
1051	if [[ $node_usage = default ]]
1052	then
1053	if [[ $host = ibms ]]
1054	then
1055	node_usage=shared
1056	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1057	then
1058	node_usage=singlejob
1059	else
1060	node_usage=not_shared
1061	fi
1062	fi
1063
1064	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1065	then
1066	printf "\n"
1067	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1068	printf "\n \"shared\" or \"not_shared\""
1069	locat=tasks_per_node; (( iec = 0 )); exit
1070	fi
1071
1072	fi
1073
1074	# PRUEFEN, OB HOSTFILE EXISTIERT
1075	if [[ -n $hostfile ]]
1076	then
1077	if [[ ! -f $hostfile ]]
1078	then
1079	printf "\n"
1080	printf "\n +++ hostfile \"$hostfile\" does not exist"
1081	locat=hostfile; exit
1082	fi
1083	fi
1084
1085	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1086	if [[ $host = ibmy && $do_remote = false ]]
1087	then
1088	if [[ ! -f $HOME/.rhosts ]]
1089	then
1090	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1091	printf "\n\n *** file:"
1092	printf "\n $HOME/.rhosts"
1093	printf "\n was created\n"
1094	fi
1095	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1096	then
1097	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1098	printf "\n\n *** file:"
1099	printf "\n $HOME/.rhosts"
1100	printf "\n was extended by the name of the current host\n"
1101	fi
1102	fi
1103
1104
1105	# Set default value for the maximum number of parallel io streams
1106	if [[ "$maximum_parallel_io_streams" = "" ]]
1107	then
1108	maximum_parallel_io_streams=$numprocs
1109	fi
1110
1111
1112	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1113	if [[ "$scp_port" != "" ]]
1114	then
1115	PORTOPT="-P $scp_port"
1116	SSH_PORTOPT="-p $scp_port"
1117	fi
1118
1119
1120	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1121	if [[ $queue = none ]]
1122	then
1123	case $host in
1124	(ibmh) queue=no_class;;
1125	(ibmkisti) queue=class.32plus;;
1126	(ibmy) queue=parallel;;
1127	(lckiaps) queue=normal;;
1128	(lckyoto) queue=ph;;
1129	(lckyuh) queue=fx-single;;
1130	(lckyut) queue=cx-single;;
1131	(lcsgib) queue=testq;;
1132	(lcsgih) queue=testq;;
1133	(lctit) queue=S;;
1134	(nech) queue=none;;
1135	(necriam) queue=SP;;
1136	(unics) queue=unics;;
1137	esac
1138	fi
1139
1140
1141	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1142	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1143	# ERMITTELN
1144	(( i = 0 ))
1145	while (( i < iin ))
1146	do
1147	(( i = i + 1 ))
1148	(( maxcycle = 0 ))
1149
1150	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1151	if [[ "${actionin[$i]}" = di ]]
1152	then
1153	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1154	# REM-MASCHINE AUSWERTEN
1155	eval filename=${pathin[$i]}/${endin[$i]}
1156	else
1157	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1158	# REM-MASCHINE AUSWERTEN
1159	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1160	fi
1161	eval pathname=${pathin[$i]}
1162
1163	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1164	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1165	then
1166	filename_input=$filename
1167	fi
1168
1169	# PRUEFEN AUF VORHANDENSEIN
1170	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1171	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1172	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1173	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1174	then
1175	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1176	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1177	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1178	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1179	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1180	if [[ "${transin[$i]}" != "locopt" ]]
1181	then
1182	printf "\n\n +++ INPUT-file: "
1183	if [[ "${extin[$i]}" = "" ]]
1184	then
1185	printf "\n $filename"
1186	else
1187	printf "\n $filename.${extin[$i]}"
1188	fi
1189	printf "\n does not exist\n"
1190	locat=input; exit
1191	else
1192	transin[$i]="unavailable"
1193	fi
1194	else
1195
1196	# ZYKLUSNUMMER FESTSTELLEN
1197	ls -1 -d $filename > filelist 2>/dev/null
1198	ls -1 -d $filename.* >> filelist 2>/dev/null
1199	while read zeile
1200	do
1201	cycle=$(print $zeile \| cut -f2 -d".")
1202	if [[ "$cycle" = "$zeile" ]]
1203	then
1204	(( icycle = 0 ))
1205	elif [[ "$cycle" = "${extin[$i]}" ]]
1206	then
1207	(( icycle = 0 ))
1208	else
1209	(( icycle = $cycle ))
1210	fi
1211	if (( icycle > maxcycle ))
1212	then
1213	(( maxcycle = icycle ))
1214	file_to_be_used=$zeile
1215	fi
1216	done <filelist
1217	rm filelist
1218
1219	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1220	if (( maxcycle > 0 ))
1221	then
1222	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1223	then
1224	filename=${filename}.$maxcycle.${extin[$i]}
1225	else
1226	filename=${filename}.$maxcycle
1227	fi
1228	else
1229	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1230	then
1231	filename=${filename}.${extin[$i]}
1232	fi
1233	fi
1234
1235	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1236	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1237	absnamein[$i]=$filename
1238	if (( maxcycle > 0 ))
1239	then
1240	if [[ "${actionin[$i]}" = di ]]
1241	then
1242	frelin[$i]=${endin[$i]}.$maxcycle
1243	else
1244	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1245	fi
1246	else
1247	if [[ "${actionin[$i]}" = di ]]
1248	then
1249	frelin[$i]=${endin[$i]}
1250	else
1251	frelin[$i]=${afname}${endin[$i]}
1252	fi
1253	fi
1254
1255	fi
1256	done
1257
1258	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1259	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1260	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1261	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1262	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1263	(( i = 0 ))
1264	while (( i < iout ))
1265	do
1266	(( i = i + 1 ))
1267	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1268	then
1269	if [[ "${actionout[$i]}" = tr ]]
1270	then
1271	actionout[$i]=""
1272	elif [[ "${actionout[$i]}" = trpe ]]
1273	then
1274	actionout[$i]=pe
1275	elif [[ "${actionout[$i]}" = tra ]]
1276	then
1277	actionout[$i]=a
1278	fi
1279	(( maxcycle = 0 ))
1280	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1281	eval catalogname=${pathout[$i]}
1282	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1283	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1284	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1285	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1286	then
1287
1288	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1289	if cat /dev/null > $filename
1290	then
1291	rm $filename
1292	else
1293
1294	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1295	if [[ ! -d $catalogname ]]
1296	then
1297	if mkdir -p $catalogname
1298	then
1299	printf "\n\n *** directory:"
1300	printf "\n $catalogname"
1301	printf "\n was created\n"
1302	else
1303	printf "\n\n +++ OUTPUT-file:"
1304	printf "\n $filename"
1305	printf "\n cannot be created, because directory does not exist"
1306	printf "\n and cannot be created either"
1307	printf "\n"
1308	locat=output ; exit
1309	fi 2>/dev/null
1310	else
1311	printf "\n\n +++ OUTPUT-file:"
1312	printf "\n $filename"
1313	printf "\n cannot be created, although directory exists"
1314	printf "\n"
1315	locat=output ; exit
1316	fi
1317	fi 2>/dev/null
1318	else
1319
1320	# ZYKLUSNUMMER FESTSTELLEN
1321	ls -1 -d $filename > filelist 2>/dev/null
1322	ls -1 -d $filename.* >> filelist 2>/dev/null
1323	while read zeile
1324	do
1325	cycle=$(print $zeile \| cut -f2 -d".")
1326	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1327	then
1328	(( icycle = 1 ))
1329	else
1330	(( icycle = $cycle + 1 ))
1331	fi
1332	if (( icycle > maxcycle ))
1333	then
1334	(( maxcycle = icycle ))
1335	fi
1336	done <filelist
1337	rm filelist
1338	fi
1339
1340	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1341	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1342	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1343	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1344	if [[ "${actionout[$i]}" != a ]]
1345	then
1346	if (( maxcycle > 0 ))
1347	then
1348	filename=${filename}.$maxcycle
1349	if cat /dev/null > $filename
1350	then
1351	rm $filename
1352	else
1353	printf "\n +++ OUTPUT-file:"
1354	printf "\n $filename"
1355	printf "\n cannot be created"
1356	locat=output ; exit
1357	fi
1358	fi
1359	else
1360	(( maxcycle = maxcycle - 1 ))
1361	if (( maxcycle > 0 ))
1362	then
1363	filename=${filename}.$maxcycle
1364	fi
1365	fi
1366
1367	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1368	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1369	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1370	pathout[$i]=$filename
1371	if (( maxcycle > 0 ))
1372	then
1373	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1374	else
1375	frelout[$i]=${fname}${endout[$i]}
1376	fi
1377
1378	fi
1379	done
1380
1381
1382	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1383	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1384	then
1385	if [[ "$dvr_inc" = "" ]]
1386	then
1387	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1388	printf "\n This is required for the dvrp_graphics package.\n"
1389	locat=dvr; exit
1390	fi
1391	if [[ "$dvr_lib" = "" ]]
1392	then
1393	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1394	printf "\n This is required for the dvrp_graphics package.\n"
1395	locat=dvr; exit
1396	fi
1397	fi
1398
1399
1400	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1401	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1402	# UEBERSETZT ZU WERDEN)
1403	if [[ "$mainprog" = "" && "$executable" = "" ]]
1404	then
1405	printf "\n +++ neither main program nor executable defined"
1406	locat=source; exit
1407	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1408	then
1409	printf "\n +++ main program as well as executable defined"
1410	locat=source; exit
1411	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1412	then
1413	do_compile=false
1414	fi
1415
1416
1417	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1418	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1419	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1420	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1421	then
1422	rm -rf SOURCES_FOR_RUN_$fname
1423	mkdir SOURCES_FOR_RUN_$fname
1424	fi
1425
1426
1427	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1428	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1429	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1430	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1431	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1432	then
1433
1434	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1435
1436	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1437	then
1438
1439	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1440	source_list=""
1441	cd $source_path
1442
1443
1444	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1445	if [[ ! -d .svn ]]
1446	then
1447	printf "\n\n +++ source directory"
1448	printf "\n \"$source_path\" "
1449	printf "\n is not under control of \"subversion\"."
1450	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1451	fi
1452
1453
1454	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1455	Filenames=""
1456	svn status > tmp_mrun
1457	while read line
1458	do
1459	firstc=`echo $line \| cut -c1`
1460	if [[ $firstc = M \|\| $firstc = "?" ]]
1461	then
1462	Name=`echo "$line" \| cut -c8-`
1463	extension=`echo $Name \| cut -d. -f2`
1464	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1465	then
1466	Filenames="$Filenames "$Name
1467	fi
1468	fi
1469	done < tmp_mrun
1470
1471
1472	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1473	for dateiname in $Filenames
1474	do
1475	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1476	source_list=$source_list"$dateiname "
1477	done
1478
1479	cd - > /dev/null
1480
1481
1482	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1483	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1484	# VORHANDEN
1485	elif [[ "$source_list" != "" && $restart_run != true ]]
1486	then
1487
1488	cd $source_path
1489
1490	for filename in $source_list
1491	do
1492
1493	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1494	if [[ $(print $filename \| grep -c "/") != 0 ]]
1495	then
1496	printf "\n +++ source code file: $filename"
1497	printf "\n must not contain (\"/\") "
1498	locat=source; exit
1499	fi
1500
1501	if [[ ! -f $filename ]]
1502	then
1503	printf "\n +++ source code file: $filename"
1504	printf "\n does not exist"
1505	locat=source; exit
1506	else
1507	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1508	fi
1509
1510	done
1511
1512	cd - > /dev/null
1513
1514	fi
1515
1516
1517	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1518	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1519	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1520	if [[ $restart_run != true ]]
1521	then
1522
1523	if [[ ! -f "$source_path/$mainprog" ]]
1524	then
1525	printf "\n\n +++ main program: $mainprog"
1526	printf "\n does not exist in source directory"
1527	printf "\n \"$source_path\"\n"
1528	locat=source; exit
1529	else
1530	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1531	then
1532	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1533	source_list=${mainprog}" $source_list"
1534	fi
1535	fi
1536	fi
1537
1538
1539	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1540	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1541	if [[ "$restart_run" != true ]]
1542	then
1543	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1544	if [[ ! -f $makefile ]]
1545	then
1546	printf "\n +++ file \"$makefile\" does not exist"
1547	locat=make; exit
1548	else
1549	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1550	fi
1551	fi
1552
1553
1554	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1555	if [[ $restart_run != true && "$add_source_path" != "" ]]
1556	then
1557
1558	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1559	if [[ ! -d $add_source_path ]]
1560	then
1561	printf "\n\n +++ WARNING: additional source code directory"
1562	printf "\n \"$add_source_path\" "
1563	printf "\n does not exist or is not a directory."
1564	printf "\n No source code will be used from this directory!\n"
1565	add_source_path=""
1566	if [[ $silent == false ]]
1567	then
1568	sleep 3
1569	fi
1570	else
1571
1572	cd $add_source_path
1573	found=false
1574
1575	Names=$(ls -1 *.f90 2>&1)
1576	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1577	Names=$(ls -1 *.F90 2>&1)
1578	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1579	Names=$(ls -1 *.F 2>&1)
1580	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1581	Names=$(ls -1 *.f 2>&1)
1582	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1583	Names=$(ls -1 *.c 2>&1)
1584	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1585
1586	cd - > /dev/null
1587	cd SOURCES_FOR_RUN_$fname
1588
1589	# COPY MAKEFILE IF EXISTING
1590	if [[ -f $add_source_path/Makefile ]]
1591	then
1592	printf "\n\n *** user Makefile from directory"
1593	printf "\n \"$add_source_path\" is used \n"
1594	if [[ $silent == false ]]
1595	then
1596	sleep 1
1597	fi
1598	cp $add_source_path/Makefile .
1599	fi
1600
1601	for dateiname in $AddFilenames
1602	do
1603	if [[ -f $dateiname ]]
1604	then
1605	printf "\n +++ source code file \"$dateiname\" found in additional"
1606	printf "\n source code directory \"$add_source_path\" "
1607	printf "\n but was also given with option \"-s\" which means that it should be taken"
1608	printf "\n from directory \"$source_path\"."
1609	locat=source; exit
1610	fi
1611
1612	cp $add_source_path/$dateiname .
1613	source_list="$source_list $dateiname"
1614
1615	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1616	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1617	then
1618	printf "\n\n +++ user file \"$dateiname\" "
1619	printf "\n is not listed in Makefile \n"
1620	locat=source; exit
1621	else
1622
1623	# Default User-Interface von der Liste entfernen, falls Datei
1624	# ein User-Interface enthaelt
1625	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1626	# then
1627	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1628	# then
1629	# rm -rf user_interface.f90
1630	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1631	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1632	# printf "\n since a user-interface is found in file"
1633	# printf "\n \"$add_source_path/$dateiname\" \n"
1634	# sleep 3
1635	# else
1636	if [[ $found = false ]]
1637	then
1638	found=true
1639	printf "\n\n *** following user file(s) added to the"
1640	printf " files to be translated:\n "
1641	fi
1642	printf "$dateiname "
1643	if [[ $silent == false ]]
1644	then
1645	sleep 0.5
1646	fi
1647
1648	fi
1649	done
1650	[[ $found = true ]] && printf "\n"
1651	cd - > /dev/null
1652	fi
1653	fi
1654
1655
1656	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1657	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1658	if [[ $restart_run != true && -n $package_list ]]
1659	then
1660
1661	cd $source_path
1662
1663	for package in $package_list
1664	do
1665
1666	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1667
1668	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1669	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1670	# LIEFERT
1671	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1672
1673
1674	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1675	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1676	for source_list_name in $package_source_list
1677	do
1678	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1679	then
1680
1681	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1682	ending=`echo $source_list_name \| cut -f2 -d.`
1683	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1684	then
1685	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1686	source_list="$source_list $source_list_name"
1687	fi
1688	fi
1689	done
1690	done
1691
1692	cd - > /dev/null
1693	fi
1694
1695
1696	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1697	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1698	# if [[ "$restart_run" != true ]]
1699	# then
1700	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1701	# if [[ ! -f $makefile ]]
1702	# then
1703	# printf "\n +++ file \"$makefile\" does not exist"
1704	# locat=make; exit
1705	# else
1706	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1707	# fi
1708	# fi
1709
1710	fi # do_compile=true
1711
1712
1713	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1714	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1715	if [[ $do_compile = true ]]
1716	then
1717
1718	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1719	# ZUSAMMENSETZEN
1720	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1721	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1722	then
1723	cpp_options="${cpp_options},-D__ibm=__ibm"
1724	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1725	then
1726	cpp_options="$cpp_options -D__nec"
1727	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1728	then
1729	cpp_options="$cpp_options -D__lc"
1730	else
1731	cpp_options="$cpp_options -D__$localhost"
1732	fi
1733
1734	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1735	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1736	then
1737	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1738	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1739	else
1740	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1741	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1742	fi
1743
1744	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1745	if [[ -n $package_list ]]
1746	then
1747	for package in $package_list
1748	do
1749	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1750	then
1751	if [[ $package != "dvrp_graphics+1PE" ]]
1752	then
1753	cpp_options="${cpp_options},-D__$package=__$package"
1754	else
1755	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1756	export use_seperate_pe_for_dvrp_output=true
1757	fi
1758	else
1759	if [[ $package != "dvrp_graphics+1PE" ]]
1760	then
1761	cpp_options="$cpp_options -D__$package"
1762	else
1763	cpp_options="$cpp_options -D__dvrp_graphics"
1764	export use_seperate_pe_for_dvrp_output=true
1765	fi
1766	fi
1767	done
1768	fi
1769
1770	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1771	if [[ -n $cpp_opts ]]
1772	then
1773	for popts in $cpp_opts
1774	do
1775	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1776	then
1777	cpp_options="${cpp_options},-D__$popts=__$popts"
1778	else
1779	cpp_options="$cpp_options -D__$popts"
1780	fi
1781	done
1782	fi
1783
1784	else
1785
1786
1787	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1788	if [[ $do_remote = false ]]
1789	then
1790	if [[ ! -f $executable ]]
1791	then
1792	printf "\n +++ executable file: $executable"
1793	printf "\n does not exist"
1794	locat=executable; exit
1795	fi
1796	fi
1797	fi
1798
1799
1800	# JOBMODUS FESTSTELLEN
1801	if [[ "$ENVIRONMENT" = BATCH ]]
1802	then
1803	jobmo=BATCH
1804	else
1805	jobmo=INTERACTIVE
1806	fi
1807
1808
1809	# no interactive runs on lctit
1810	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1811	then
1812	printf "\n +++ no interactive runs allowed on host \"$host\" "
1813	printf "\n please submit batch job using mrun option \"-b\" \n"
1814	locat=normal; exit
1815	fi
1816
1817
1818	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1819	# DURCH BENUTZER ANDERWEITIG VEREINBART
1820	if [[ "$compiler_name" = "" ]]
1821	then
1822
1823	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1824	locat=compiler_name; exit
1825
1826	fi
1827
1828
1829	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1830	[[ $localhost = necriam ]] && compiler_name=mpif90
1831
1832
1833
1834	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1835	kennung=$RANDOM
1836	if [[ "$tmp_user_catalog" = "" ]]
1837	then
1838	if [[ $localhost = ibmh ]]
1839	then
1840	tmp_user_catalog=$SCRATCH
1841	elif [[ $localhost = nech ]]
1842	then
1843	tmp_user_catalog=$WRKSHR
1844	else
1845	tmp_user_catalog=/tmp
1846	fi
1847	fi
1848	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1849
1850
1851	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1852	# BESTIMMEN
1853	if [[ "$tmp_data_catalog" = "" ]]
1854	then
1855	if [[ $localhost = nech ]]
1856	then
1857	tmp_data_catalog=$WRKSHR/mrun_restart_data
1858	else
1859	tmp_data_catalog=/tmp/mrun_restart_data
1860	fi
1861	fi
1862
1863
1864	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1865	# ERSETZEN
1866	if [[ $do_remote = false && $do_compile = true ]]
1867	then
1868	eval fopts=\"$fopts\"
1869	eval lopts=\"$lopts\"
1870	fi
1871
1872
1873
1874	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1875	fopts="$fopts $netcdf_inc $dvr_inc"
1876	lopts="$lopts $netcdf_lib $dvr_lib"
1877	ROPTS="$ropts"
1878	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1879	# then
1880	XOPT="-X $numprocs"
1881	# fi
1882
1883
1884
1885	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1886	# GRAMM BENOETIGT
1887	done=false
1888	while [[ $done = false ]]
1889	do
1890	cputime=$cpumax
1891	if (( $cputime == 0 ))
1892	then
1893	if [[ $do_batch = true ]]
1894	then
1895	printf "\n +++ cpu-time is undefined"
1896	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1897	printf "\n >>> "
1898	read cputime 1>/dev/null 2>&1
1899	else
1900	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1901	fi
1902	else
1903	done=true
1904	fi
1905	cpumax=$cputime
1906	done
1907
1908	(( minuten = cputime / 60 ))
1909	(( sekunden = cputime - minuten * 60 ))
1910
1911
1912	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1913	if [[ $do_batch = true ]]
1914	then
1915	done=false
1916	while [[ $done = false ]]
1917	do
1918	if (( memory == 0 ))
1919	then
1920	printf "\n +++ memory demand is undefined"
1921	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1922	printf "\n >>> "
1923	read memory 1>/dev/null 2>&1
1924	else
1925	done=true
1926	fi
1927	done
1928	fi
1929
1930
1931	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1932	if [[ $do_remote = true && -z $remote_username ]]
1933	then
1934	while [[ -z $remote_username ]]
1935	do
1936	printf "\n +++ username on remote host \"$host\" is undefined"
1937	printf "\n >>> Please type username:"
1938	printf "\n >>> "
1939	read remote_username
1940	done
1941	mc="$mc -u$remote_username"
1942	fi
1943
1944	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1945	if [[ "$login_init_cmd" != "" ]]
1946	then
1947	export init_cmds="${login_init_cmd};"
1948	fi
1949
1950
1951	# set module load command and export for subjob
1952	if [[ "$modules" != "" ]]
1953	then
1954	if [[ $host = lctit ]]
1955	then
1956	export module_calls=". $modules"
1957	else
1958	export module_calls="module load ${modules};"
1959	fi
1960	fi
1961
1962	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1963	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1964	then
1965	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1966	then
1967	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1968	fi
1969	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1970	# then
1971	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1972	# echo "*** module_calls = $module_calls"
1973	# fi
1974	fi
1975
1976
1977	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1978	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1979	then
1980	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1981	then
1982	mpilib=mpt
1983	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1984	then
1985	mpilib=mvapich
1986	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1987	then
1988	mpilib=impi
1989	fi
1990	fi
1991
1992
1993
1994	###########################################################################
1995	# HEADER-AUSGABE
1996	###########################################################################
1997
1998
1999	calltime=$(date)
2000	printf "\n"
2001	# [[ $silent = false ]] && clear
2002	printf "#--------------------------------------------------------------# \n"
2003	printf "\| $version$calltime \| \n"
2004	printf "\| \| \n"
2005	spalte1="called on:"; spalte2=$localhost_realname
2006	printf "\| $spalte1$spalte2 \| \n"
2007	if [[ $local_compile = false ]]
2008	then
2009	if [[ $do_remote = true ]]
2010	then
2011	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2012	else
2013	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2014	fi
2015	else
2016	spalte1="compiling test only!"; spalte2=""
2017	fi
2018	printf "\| $spalte1$spalte2 \| \n"
2019	if [[ -n $numprocs ]]
2020	then
2021	spalte1="number of PEs:"; spalte2=$numprocs
2022	printf "\| $spalte1$spalte2 \| \n"
2023	fi
2024	if [[ -n $tasks_per_node ]]
2025	then
2026	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2027	printf "\| $spalte1$spalte2 \| \n"
2028	fi
2029	if [[ $maximum_parallel_io_streams != $numprocs ]]
2030	then
2031	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2032	printf "\| $spalte1$spalte2 \| \n"
2033	fi
2034	if [[ $use_openmp = true ]]
2035	then
2036	spalte1="threads per task:"; spalte2="$threads_per_task"
2037	printf "\| $spalte1$spalte2 \| \n"
2038	fi
2039	printf "\| \| \n"
2040	if [[ $do_compile = true ]]
2041	then
2042	if [[ "$mopts" != "" ]]
2043	then
2044	spalte1="make options:"; spalte2=$mopts
2045	printf "\| $spalte1$spalte2 \| \n"
2046	zeile=$(echo "$mopts" \| cut -c41-)
2047	while [[ "$zeile" != "" ]]
2048	do
2049	spalte1=""
2050	spalte2=$zeile
2051	printf "\| $spalte1$spalte2 \| \n"
2052	zeile=$(echo "$zeile" \| cut -c41-)
2053	done
2054	fi
2055
2056	spalte1="cpp directives:"; spalte2=$cpp_options
2057	printf "\| $spalte1$spalte2 \| \n"
2058	zeile=$(echo "$cpp_options" \| cut -c41-)
2059	while [[ "$zeile" != "" ]]
2060	do
2061	spalte1=""
2062	spalte2=$zeile
2063	printf "\| $spalte1$spalte2 \| \n"
2064	zeile=$(echo "$zeile" \| cut -c41-)
2065	done
2066
2067	spalte1="compiler options:"; spalte2="$fopts"
2068	printf "\| $spalte1$spalte2 \| \n"
2069	zeile=$(echo "$fopts" \| cut -c41-)
2070	while [[ "$zeile" != "" ]]
2071	do
2072	spalte1=""
2073	spalte2=$zeile
2074	printf "\| $spalte1$spalte2 \| \n"
2075	zeile=$(echo "$zeile" \| cut -c41-)
2076	done
2077
2078	spalte1="linker options:"; spalte2=$lopts
2079	printf "\| $spalte1$spalte2 \| \n"
2080	zeile=$(echo "$lopts" \| cut -c41-)
2081	while [[ "$zeile" != "" ]]
2082	do
2083	spalte1=""
2084	spalte2=$zeile
2085	printf "\| $spalte1$spalte2 \| \n"
2086	zeile=$(echo "$zeile" \| cut -c41-)
2087	done
2088
2089	spalte1="modules to be load:"; spalte2=$modules
2090	printf "\| $spalte1$spalte2 \| \n"
2091	zeile=$(echo "$modules" \| cut -c41-)
2092	while [[ "$zeile" != "" ]]
2093	do
2094	spalte1=""
2095	spalte2=$zeile
2096	printf "\| $spalte1$spalte2 \| \n"
2097	zeile=$(echo "$zeile" \| cut -c41-)
2098	done
2099
2100	spalte1="main program":; spalte2=$mainprog
2101	printf "\| $spalte1$spalte2 \| \n"
2102	else
2103	spalte1=executable:; spalte2=$executable
2104	printf "\| $spalte1$spalte2 \| \n"
2105	fi
2106	printf "\| \| \n"
2107	spalte1="base name of files":; spalte2=$fname
2108	printf "\| $spalte1$spalte2 \| \n"
2109	if [[ $fname != $afname ]]
2110	then
2111	spalte1="base name of input files":; spalte2=$afname
2112	printf "\| $spalte1$spalte2 \| \n"
2113	fi
2114	spalte1="INPUT control list":; spalte2=$input_list
2115	printf "\| $spalte1$spalte2 \| \n"
2116	spalte1="OUTPUT control list":; spalte2=$output_list
2117	printf "\| $spalte1$spalte2 \| \n"
2118
2119	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2120	then
2121	spalte1="memory demand / PE":; spalte2="$memory MB"
2122	printf "\| $spalte1$spalte2 \| \n"
2123	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2124	printf "\| $spalte1$spalte2 \| \n"
2125	fi
2126
2127	if [[ $do_compile = true ]]
2128	then
2129	printf "\| \| \n"
2130	printf "\| Files to be compiled: \| \n"
2131	zeile=$source_list
2132	while [[ "$zeile" != "" ]]
2133	do
2134	spalte3=$zeile
2135	printf "\| $spalte3 \| \n"
2136	zeile=$(echo "$zeile" \| cut -c61-)
2137	done
2138	fi
2139	printf "#--------------------------------------------------------------#"
2140
2141
2142
2143	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2144	if [[ $do_trace = true ]]
2145	then
2146	(( i = 0 ))
2147	while (( i < iin ))
2148	do
2149	(( i = i + 1 ))
2150	if (( i == 1 ))
2151	then
2152	printf "\n\n >>> INPUT-file assignments:\n"
2153	fi
2154	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2155	done
2156	(( i = 0 ))
2157	while (( i < iout ))
2158	do
2159	(( i = i + 1 ))
2160	if (( i == 1 ))
2161	then
2162	printf "\n\n >>> OUTPUT-file assignments:\n"
2163	fi
2164	printf "\n ${localout[$i]} : ${pathout[$i]}"
2165	done
2166	(( i = 0 ))
2167	while (( i < iic ))
2168	do
2169	(( i = i + 1 ))
2170	if (( i == 1 ))
2171	then
2172	printf "\n\n >>> INPUT-commands:\n"
2173	fi
2174	printf "\n ${in_command[$i]}"
2175	done
2176	(( i = 0 ))
2177	while (( i < ioc ))
2178	do
2179	(( i = i + 1 ))
2180	if (( i == 1 ))
2181	then
2182	printf "\n\n >>> OUTPUT-commands:\n"
2183	fi
2184	printf "\n ${out_command[$i]}"
2185	done
2186	fi
2187
2188
2189	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2190	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2191	then
2192	antwort=dummy
2193	printf "\n\n"
2194	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2195	do
2196	printf " >>> everything o.k. (y/n) ? "
2197	read antwort
2198	done
2199	if [[ $antwort = n \|\| $antwort = N ]]
2200	then
2201	locat=user_abort; (( iec = 0 )); exit
2202	fi
2203	if [[ $do_batch = true ]]
2204	then
2205	printf " >>> batch-job will be created and submitted"
2206	else
2207	if [[ $local_compile = false ]]
2208	then
2209	printf " >>> MRUN will now continue to execute on this machine"
2210	else
2211	printf " >>> a test compilation will now be carried out on this machine"
2212	fi
2213	fi
2214	fi
2215
2216	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2217
2218	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2219	check_depository="${working_directory}/trunk/UTIL"
2220	check_sources="${working_directory}/tmp_check_namelist_files"
2221	skip_check=false
2222
2223	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2224	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2225	then
2226	skip_check=true
2227	reason="run on remote host or parameter file check has not been compiled."
2228	fi
2229	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2230	then
2231	skip_check=true
2232	reason="parameter file check has not been compiled."
2233	fi
2234
2235	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2236	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2237	then
2238	skip_check=true
2239	reason="serial run."
2240	fi
2241
2242	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2243	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2244	if [[ $check_namelist_files == false ]]
2245	then
2246	skip_check=true
2247	reason="-z option set."
2248	fi
2249
2250	if [[ $fromhost != $localhost ]]
2251	then
2252	skip_check=true
2253	reason="submitting host is local host."
2254	fi
2255
2256	if [[ $run_coupled_model == true ]]
2257	then
2258	skip_check=true
2259	reason="coupled run."
2260	fi
2261
2262	if [[ $restart_run == true ]]
2263	then
2264	skip_check=true
2265	reason="restart run."
2266
2267	fi
2268
2269	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2270	((last_char = `echo $filename_input \| wc -c` - 1))
2271	last_char=`echo $filename_input \|cut -c$last_char`
2272	if [[ "$last_char" == "f" ]]
2273	then
2274	skip_check=true
2275	reason="restart run."
2276	fi
2277
2278	if [[ $skip_check == false ]]
2279	then
2280
2281	tmp_check=${working_directory}/tmp_check
2282
2283	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2284	# NOT NECESSARILY REQUIRED
2285	line=""
2286	found=false
2287	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2288	while read line1
2289	do
2290	line="$line1"
2291	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2292	then
2293	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2294	found=true
2295	fi
2296	done < $tmp_check
2297
2298	if [[ $found = false ]]
2299	then
2300	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2301	fi
2302
2303	rm -rf ${working_directory}/tmp_check
2304
2305	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2306	for item in $input_list
2307	do
2308	if [[ "$item" == "restart" ]]
2309	then
2310	check_restart=1
2311	else
2312	check_restart=0
2313	fi
2314	done
2315
2316	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2317	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2318	then
2319	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2320	locat=check_namelist; exit
2321	fi
2322
2323	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2324	if [[ $check_restart == 1 ]]
2325	then
2326
2327
2328
2329	filenamef="${filename_input}f"
2330	if [[ ! -f $filenamef ]]
2331	then
2332	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2333	check_restart=0
2334	answer=dummy
2335	printf "\n\n"
2336
2337	if [[ $silent == false ]]
2338	then
2339	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2340	do
2341	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2342	read answer
2343	done
2344	if [[ $answer = a \|\| $answer = A ]]
2345	then
2346	printf "\n +++ Aborting...."
2347	locat=normal; exit
2348	fi
2349	fi
2350	else
2351	check_restart=1
2352	fi
2353	fi
2354
2355	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2356	mkdir $check_sources
2357	cd $check_sources
2358
2359
2360	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2361	if [[ -d $add_source_path ]]
2362	then
2363	printf "\n\n *** copying files from $check_depository"
2364	cp $check_depository/check_namelist_files.tar ./
2365
2366	printf "\n\n *** untar of makefile and source files in $check_sources"
2367	tar -xf check_namelist_files.tar > /dev/null 2>&1
2368
2369	printf "\n\n *** adding user code."
2370	cp $add_source_path/* ./
2371	touch check_namelist_files.f90
2372
2373	# GET COMPILER OPTIONS AND PERFORM MAKE
2374	printf "\n\n *** compiling code if necessary...\n"
2375
2376	# workaround for batch jobs on local machine (lcxe6)
2377	if [[ $do_batch == true && $do_remote == false ]]
2378	then
2379	eval $init_cmds
2380	fi
2381
2382	# GET CHECK OPTIONS
2383	line=""
2384	found=false
2385
2386	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2387
2388	while read line1
2389	do
2390
2391	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2392	then
2393	line="$line1"
2394	fi
2395
2396	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2397	then
2398	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2399	line="$line "
2400	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2401	found=true
2402	fi
2403
2404	done < $tmp_check
2405	copts_check="$copts_check -D__check -D__parallel"
2406
2407	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2408
2409	# GET MAKE OUTPUT
2410	if [[ $? != 0 ]]
2411	then
2412	printf "\n +++ error during make."
2413	answer=dummy
2414	printf "\n\n"
2415	if [[ $silent == false ]]
2416	then
2417	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2418	do
2419	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2420	read answer
2421	done
2422	if [[ $answer = a \|\| $answer = A ]]
2423	then
2424	printf "\n +++ Aborting..."
2425	rm -rf $check_sources
2426	locat=normal; exit
2427	else
2428	skip_check=true
2429	fi
2430	else
2431	skip_check=true
2432	fi
2433	fi
2434	else
2435	cp $PALM_BIN/check_namelist_files.x ./
2436	fi
2437
2438	cp $filename_input ./PARIN
2439	if [[ $check_restart == 1 ]]
2440	then
2441	cp $filenamef ./PARINF
2442	fi
2443
2444	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2445	then
2446	printf "\n *** adding topography data"
2447	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2448
2449	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2450	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2451	# WHICH REQUIRE SUFFICIENT MEMORY
2452	ulimit -s unlimited
2453	fi
2454
2455	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2456	cat > ENVPAR << %%END%%
2457	&envpar run_identifier = '$fname', host = '$host',
2458	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2459	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2460	maximum_cpu_time_allowed = ${cpumax}.,
2461	revision = '$global_revision',
2462	local_dvrserver_running = $local_dvrserver_running /
2463
2464	%%END%%
2465
2466	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2467	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2468	printf "\n +++ WARNING: check_namelist_files.x not found."
2469	answer=dummy
2470	printf "\n\n"
2471
2472	if [[ $silent == false ]]
2473	then
2474	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2475	do
2476	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2477	read answer
2478	done
2479	if [[ $answer = a \|\| $answer = A ]]
2480	then
2481	printf "\n +++ Aborting..."
2482	rm -rf $check_sources
2483	locat=normal; exit
2484	else
2485	printf "\n *** skipping parameter file check."
2486
2487	fi
2488	fi
2489
2490	elif [[ $skip_check == false ]]
2491	then
2492	# STARTING THE PARAMETER FILE CHECK
2493	printf "\n\n *** starting parameter file check..."
2494
2495	# CHECKING THE P3D FILE
2496	printf "\n\n (1) checking $filename_input"
2497	echo "$numprocs 0 0" > VARIN
2498	errors=`./check_namelist_files.x < VARIN 2>&1`
2499
2500	check_error=false
2501	if [[ "$errors" == "" ]]
2502	then
2503	printf " --> o.k."
2504	else
2505	printf " --> failed."
2506	check_error=true
2507	printf "\n\n $errors"
2508	fi
2509
2510	# CHECKING THE PD3F FILE IF NECESSARY
2511	if [[ $check_restart == 1 && $check_error == false ]]
2512	then
2513	printf "\n\n (2) checking $filenamef"
2514
2515	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2516	found=false
2517	cat PARINF\|while read line
2518	do
2519	line=$(echo $line\|sed 's/ //g')
2520	if [[ $line == "&inipar" ]]
2521	then
2522	start_search=true
2523	fi
2524
2525	if [[ $start_search == true ]]
2526	then
2527	if [[ $line == "initializing_actions='read_restart_data'" ]]
2528	then
2529	found=true
2530	break
2531	fi
2532	fi
2533
2534	if [[ $line == "/" ]]
2535	then
2536	start_search=false
2537	fi
2538
2539	done
2540
2541	if [[ $found = false ]]
2542	then
2543	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2544	printf "\n in &inipar list in $fname$p3df_suffix."
2545	rm -rf $check_sources
2546	locat=check_namelist; exit
2547	fi
2548
2549	# READ max_user_pr FROM FILES
2550	if [[ -f parin_for_check ]]
2551	then
2552	read max_pr_user < parin_for_check
2553	else
2554	max_user_pr=0
2555	fi
2556
2557	echo "$numprocs 1 $max_pr_user" > VARIN
2558	errors=`./check_namelist_files.x < VARIN 2>&1`
2559
2560	if [[ "$errors" == "" ]]
2561	then
2562	printf " --> o.k."
2563	else
2564	printf " --> failed."
2565	check_error=true
2566	printf "\n\n $errors"
2567	fi
2568	fi
2569
2570	# REPORT ERRORS AND CONTINUE/EXIT
2571	if [[ $check_error == true ]]
2572	then
2573	printf "\n +++ errors found in the parameter file!\n"
2574	answer=dummy
2575	printf "\n\n"
2576
2577	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2578	do
2579	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2580	read answer
2581	done
2582
2583	if [[ $answer = a \|\| $answer = A ]]
2584	then
2585	printf "\n +++ Aborting..."
2586	rm -rf $check_sources
2587	locat=normal; exit
2588	fi
2589	else
2590	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2591	fi
2592	rm -rf $check_sources
2593	fi
2594	else
2595	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2596	fi
2597
2598	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2599	rm -rf $check_sources
2600	cd $working_directory
2601
2602
2603	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2604	# CHENDE AKTIONEN DURCHGEFUEHRT
2605	if [[ $do_batch = false ]]
2606	then
2607
2608
2609	# TEMPORAEREN KATALOG ERZEUGEN
2610	mkdir -p $TEMPDIR
2611	chmod go+rx $TEMPDIR
2612	tmpcreate=true
2613
2614	# set striping on lustre file system
2615	# if [[ $localhost = lcsgih ]]
2616	# then
2617	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2618	# lfs getstripe $TEMPDIR
2619	# fi
2620
2621
2622	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2623	# TEMPORAERES VERZEICHNIS KOPIEREN
2624	if [[ $do_compile = true ]]
2625	then
2626
2627	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2628	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2629	if [[ $localhost = nech ]]
2630	then
2631	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2632	if mkdir -p $TEMPDIR_COMPILE
2633	then
2634	printf "\n *** \"$TEMPDIR_COMPILE\" "
2635	printf "\n is generated as temporary directory for cross compiling\n"
2636	else
2637	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2638	printf "\n needed for cross compilation failed"
2639	locat=compile
2640	exit
2641	fi
2642	else
2643	TEMPDIR_COMPILE=$TEMPDIR
2644	fi
2645
2646
2647	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2648	line=""
2649	grep "%depository_path" $config_file > tmp_mrun
2650	while read line
2651	do
2652	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2653	then
2654	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2655	then
2656	global_depository_path=`echo $line \| cut -d" " -s -f2`
2657	fi
2658	fi
2659	done < tmp_mrun
2660
2661	line=""
2662	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2663	while read line
2664	do
2665	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2666	then
2667	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2668	then
2669	local_depository_path=`echo $line \| cut -d" " -s -f2`
2670	fi
2671	fi
2672	done < tmp_mrun
2673
2674	if [[ "$local_depository_path" = "" ]]
2675	then
2676	if [[ "$global_depository_path" != "" ]]
2677	then
2678	local_depository_path=$global_depository_path
2679	else
2680	printf "\n\n +++ no depository path found in configuration file"
2681	printf "\n for local host \"$localhost\" "
2682	printf "\n please set \"\%depository_path\" in configuration file\n"
2683	locat=config_file; exit
2684	fi
2685	fi
2686	eval local_depository_path=$local_depository_path
2687	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2688	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2689
2690
2691	basename=`print $mainprog \| cut -f1 -d"."`
2692	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2693	if [[ ! -f $make_depository ]]
2694	then
2695	printf "\n"
2696	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2697	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2698	else
2699	cp $make_depository $TEMPDIR_COMPILE
2700	cd $TEMPDIR_COMPILE
2701	tar -xf $make_depository > /dev/null 2>&1
2702	cd - > /dev/null
2703	fi
2704
2705	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2706
2707	else
2708
2709	cp $executable ${TEMPDIR}/a.out
2710
2711	fi
2712
2713
2714	# WECHSEL IN TEMPORAEREN KATALOG
2715	cd $TEMPDIR
2716	printf "\n *** changed to temporary directory: $TEMPDIR"
2717
2718
2719	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2720	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2721	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2722	# ERMITTELN
2723	(( i = 0 ))
2724	while (( i < iout ))
2725	do
2726	(( i = i + 1 ))
2727	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2728	then
2729	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2730	else
2731	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2732	fi
2733	done
2734
2735
2736	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2737	if [[ $do_compile = true ]]
2738	then
2739
2740
2741	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2742	printf "\n\n\n *** compilation starts \n$striche\n"
2743	printf " *** compilation with make using following options:\n"
2744	printf " make depository: $make_depository"
2745	if [[ "$mopts" != "" ]]
2746	then
2747	printf " make options: $mopts\n"
2748	fi
2749	printf " compilername: $compiler_name\n"
2750	printf " compiler options: $fopts\n"
2751	printf " preprocessor directives: $cpp_options \n"
2752	printf " linker options: $lopts \n"
2753	if [[ "$modules" != "" ]]
2754	then
2755	printf " modules to be load: $modules \n"
2756	fi
2757	printf " source code files: $source_list \n"
2758
2759	if [[ $localhost = nech ]]
2760	then
2761	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2762	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2763	cp $TEMPDIR_COMPILE/a.out .
2764	[[ $? != 0 ]] && compile_error=true
2765	rm -rf $TEMPDIR_COMPILE
2766	elif [[ $localhost = ibmh ]]
2767	then
2768	printf " compiler is called via ssh on \"plogin1\" \n"
2769	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2770	[[ ! -f a.out ]] && compile_error=true
2771	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2772	elif [[ $localhost = lcsgib ]]
2773	then
2774	printf " compiler is called via ssh on \"bicegate0\" \n"
2775	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2776	[[ ! -f a.out ]] && compile_error=true
2777	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2778	elif [[ $localhost = lcsgih ]]
2779	then
2780	printf " compiler is called via ssh on \"hicegate0\" \n"
2781	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2782	[[ ! -f a.out ]] && compile_error=true
2783	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2784	elif [[ $localhost = lcflow ]]
2785	then
2786	printf " compiler is called via ssh on \"flow\" \n"
2787	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2788	[[ ! -f a.out ]] && compile_error=true
2789	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2790	else
2791	[[ "$init_cmds" != "" ]] && eval $init_cmds
2792	[[ "$module_calls" != "" ]] && eval $module_calls
2793	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2794
2795	fi
2796
2797	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2798	then
2799	printf "\n +++ error occured while compiling or linking"
2800	locat=compile
2801
2802	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2803	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2804	# then
2805	exit
2806	# else
2807	# locat=normal
2808	# fi
2809	else
2810	printf "$striche\n *** compilation finished \n"
2811	fi
2812	fi
2813
2814
2815	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2816	if [[ $local_compile = true ]]
2817	then
2818	cd $HOME
2819	rm -rf $TEMPDIR
2820	locat=local_compile; exit
2821	fi
2822
2823
2824	# BEREITSTELLEN DER INPUT-DATEIEN
2825	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2826	(( i = 0 ))
2827	while (( i < iin ))
2828	do
2829	(( i = i + 1 ))
2830	if (( i == 1 ))
2831	then
2832	printf "\n\n *** providing INPUT-files:\n$striche"
2833	fi
2834
2835
2836	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2837	if [[ "${transin[$i]}" = unavailable ]]
2838	then
2839	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2840	then
2841	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2842	printf "\n is not available!"
2843	else
2844	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2845	printf "\n is not available!"
2846	fi
2847	continue
2848	fi
2849
2850	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2851	files_for_pes=false; datentyp=file
2852	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2853	then
2854	files_for_pes=true; datentyp=directory
2855	actionin[$i]=""
2856	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2857	then
2858	actionin[$i]=""
2859	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2860	then
2861	files_for_pes=true; datentyp=directory
2862	actionin[$i]="ar"
2863	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2864	then
2865	actionin[$i]="ar"
2866	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2867	then
2868	files_for_pes=true; datentyp=directory
2869	actionin[$i]="fl"
2870	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2871	then
2872	actionin[$i]="fl"
2873	fi
2874
2875	if [[ $files_for_pes = true ]]
2876	then
2877	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2878	else
2879	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2880	fi
2881
2882	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2883	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2884	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2885	# SERVER ZU HOLEN
2886	if [[ "${actionin[$i]}" = fl ]]
2887	then
2888	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2889	if [[ $files_for_pes = false ]]
2890	then
2891	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2892	then
2893	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2894	got_tmp[$i]=true
2895	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2896	then
2897	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2898	printf "\n *** trying to use backup copy in \"$WORK\" "
2899	cp $WORK/${frelin[$i]} ${localin[$i]}
2900	else
2901	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2902	printf "\n or \"$tmp_data_catalog\" does not exist!"
2903	printf "\n *** trying to get copy from archive"
2904	actionin[$i]=ar
2905	fi
2906	else
2907	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2908	then
2909	mkdir ${localin[$i]}
2910	cd $tmp_data_catalog/${frelin[$i]}
2911	for file in $(ls *)
2912	do
2913	ln $file $TEMPDIR/${localin[$i]}
2914	done
2915	cd $TEMPDIR
2916	got_tmp[$i]=true
2917	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2918	then
2919	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2920	printf "\n *** trying to use backup copy in \"$WORK\" "
2921	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2922	else
2923	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2924	printf "\n or \"$tmp_data_catalog\" does not exist!"
2925	printf "\n *** trying to get copy from archive"
2926	actionin[$i]=ar
2927	fi
2928	fi
2929	fi
2930
2931
2932	# DATEI LIEGT AUF ARCHIV-SERVER
2933	if [[ "${actionin[$i]}" = ar ]]
2934	then
2935
2936	if [[ $files_for_pes = false ]]
2937	then
2938	printf "\n file will be restored from archive-system ($archive_system)!"
2939	else
2940	printf "\n directory will be restored from archive-system ($archive_system)!"
2941	fi
2942
2943	file_restored=false
2944
2945	if [[ $archive_system = asterix ]]
2946	then
2947	do_stagein=true
2948	(( stagein_anz = 0 ))
2949	while [[ $do_stagein = true ]]
2950	do
2951	if [[ $files_for_pes = false ]]
2952	then
2953	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2954	else
2955	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2956	fi
2957	cat STAGEIN_OUTPUT
2958	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2959	then
2960	file_restored=true
2961	do_stagein=false
2962	else
2963	(( stagein_anz = stagein_anz + 1 ))
2964	if (( stagein_anz == 10 ))
2965	then
2966	printf "\n +++ stagein stoped after 10 tries"
2967	locat=stage
2968	exit
2969	fi
2970	printf "\n +++ restoring from archive failed, trying again:"
2971	sleep 900
2972	fi
2973	done
2974	elif [[ $archive_system = DMF ]]
2975	then
2976	if [[ $files_for_pes = false ]]
2977	then
2978	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2979	locat=DMF
2980	exit
2981	else
2982	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2983	cp -r $ARCHIVE/${frelin[$i]} $PWD
2984	file_restored=true
2985	fi
2986	elif [[ $archive_system = tivoli ]]
2987	then
2988	if [[ $files_for_pes = false ]]
2989	then
2990	if [[ $localhost = lcsgih ]]
2991	then
2992	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2993	else
2994	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2995	fi
2996	else
2997	(( inode = 0 ))
2998	while (( inode < nodes ))
2999	do
3000	if [[ $localhost = lcsgih ]]
3001	then
3002	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3003	else
3004	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3005	fi
3006	(( inode = inode + 1 ))
3007	done
3008	fi
3009	file_restored=true
3010	elif [[ $archive_system = ut ]]
3011	then
3012	if [[ $files_for_pes = false ]]
3013	then
3014	cp $UT/${frelin[$i]} .
3015	else
3016	(( inode = 0 ))
3017	while (( inode < nodes ))
3018	do
3019	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3020	(( inode = inode + 1 ))
3021	done
3022	fi
3023	file_restored=true
3024	else
3025	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3026	locat=rearchive
3027	exit
3028	fi
3029
3030	if [[ $file_restored = true ]]
3031	then
3032
3033	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3034	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3035	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3036	if [[ $files_for_pes = false ]]
3037	then
3038	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3039	else
3040	mkdir $tmp_data_catalog/${frelin[$i]}
3041	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3042	fi
3043	got_tmp[$i]=true
3044
3045	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3046	mv ${frelin[$i]} ${localin[$i]}
3047
3048	fi
3049	fi
3050
3051
3052	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3053	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3054	then
3055
3056	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3057	then
3058
3059	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3060	printf "\n file will be provided for $numprocs processors"
3061	mkdir ${localin[$i]}
3062	ival=$numprocs
3063	(( ii = 0 ))
3064	while (( ii <= ival-1 ))
3065	do
3066	if (( ii < 10 ))
3067	then
3068	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3069	elif (( ii < 100 ))
3070	then
3071	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3072	elif (( ii < 1000 ))
3073	then
3074	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3075	else
3076	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3077	fi
3078	(( ii = ii + 1 ))
3079	done
3080
3081	else
3082
3083	if [[ $files_for_pes = true ]]
3084	then
3085
3086	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3087	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3088	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3089	# PER MOVE UMBENANNT WERDEN
3090	printf "\n providing $numprocs files for the respective processors"
3091	mkdir ${localin[$i]}
3092	if [[ $link_local_input = true ]]
3093	then
3094	printf " using ln -f\n"
3095	cd ${absnamein[$i]}
3096	for file in $(ls *)
3097	do
3098	ln -f $file ${localin[$i]}
3099	done
3100	cd $TEMPDIR
3101	fi
3102	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3103	if [[ ! -f "${localin[$i]}/_0000" ]]
3104	then
3105	if [[ $link_local_input = true ]]
3106	then
3107	printf " ln failed for .../_0000, using cp...\n"
3108	fi
3109	cp -r ${absnamein[$i]}/* ${localin[$i]}
3110	fi
3111
3112	else
3113	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3114	if [[ $link_local_input = true ]]
3115	then
3116	printf " using ln -f\n"
3117	ln -f ${absnamein[$i]} ${localin[$i]}
3118	fi
3119	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3120	if [[ ! -f "${localin[$i]}" ]]
3121	then
3122	if [[ $link_local_input = true ]]
3123	then
3124	printf " ln failed, using cp...\n"
3125	fi
3126	cp ${absnamein[$i]} ${localin[$i]}
3127	fi
3128	fi
3129	fi
3130	fi
3131
3132	done
3133	if (( i != 0 ))
3134	then
3135	printf "\n$striche\n *** all INPUT-files provided \n"
3136	fi
3137
3138
3139	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3140	(( i = 0 ))
3141	while (( i < iic ))
3142	do
3143	(( i = i + 1 ))
3144	if (( i == 1 ))
3145	then
3146	printf "\n\n *** execution of INPUT-commands:\n$striche"
3147	fi
3148	printf "\n >>> ${in_command[$i]}"
3149	eval ${in_command[$i]}
3150	if (( i == iic ))
3151	then
3152	printf "\n$striche\n"
3153	fi
3154	done
3155
3156
3157	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3158	cpurest=${cpumax}.
3159
3160
3161	# START DVR STREAMING SERVER
3162	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3163	then
3164	if [[ "$dvr_server" != "" ]]
3165	then
3166
3167	printf "\n\n *** preparing the dvr streaming server configuration file"
3168
3169	# Check, if a dvr server is already running
3170	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3171	if [[ "$running_dvrserver_id" != "" ]]
3172	then
3173
3174	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3175	printf "\n This server is used instead starting a new one!"
3176	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3177
3178	else
3179
3180	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3181	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3182	then
3183	cp ${PALM_BIN}/.dvrserver.config .
3184
3185	# Entering the BASEDIR, UID and GID into this file
3186	user_id=`id -u`
3187	group_id=`id -g`
3188	# & is needed as seperator, because TEMPDIR contains /
3189	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3190	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3191	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3192	mv .dvrserver.3 .dvrserver.config
3193	rm .dvrserver.1 .dvrserver.2
3194
3195	# Start dvr server in background, get his id and print on terminal
3196	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3197	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3198	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3199	local_dvrserver_running=.TRUE.
3200	else
3201	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3202	printf "\n \"$PALM_BIN\" "
3203	locat=dvr
3204	exit
3205	fi
3206
3207	fi
3208
3209	else
3210	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3211	fi
3212	fi
3213
3214
3215	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3216	# LESEN VON PALM)
3217	cat > ENVPAR << %%END%%
3218	&envpar run_identifier = '$fname', host = '$localhost',
3219	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3220	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3221	maximum_cpu_time_allowed = ${cpumax}.,
3222	revision = '$global_revision',
3223	local_dvrserver_running = $local_dvrserver_running /
3224
3225	%%END%%
3226
3227
3228	# PROGRAMMSTART
3229	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3230	PATH=$PATH:$TEMPDIR
3231
3232	# MPI debug option (argument checking, slows down execution due to increased latency)
3233	if [[ "$mpi_debug" = true ]]
3234	then
3235	export MPI_CHECK_ARGS=1
3236	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3237	fi
3238
3239	if [[ "$totalview" = true ]]
3240	then
3241	printf "\n *** totalview debugger will be used"
3242	tv_opt="-tv"
3243	else
3244	tv_opt=""
3245	fi
3246
3247	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3248	then
3249	if [[ "$ENVIRONMENT" = BATCH ]]
3250	then
3251	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3252	then
3253	printf "\n +++ debug is allowed in interactive mode only"
3254	locat=debug
3255	exit
3256	fi
3257	fi
3258	if [[ $localhost = ibmh ]]
3259	then
3260
3261	# SETUP THE IBM MPI ENVIRONMENT
3262	export MP_SHARED_MEMORY=yes
3263	export AIXTHREADS_SCOPE=S
3264	export OMP_NUM_THREADS=$threads_per_task
3265	export AUTHSTATE=files
3266	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3267
3268	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3269	export MP_ADAPTER_USE=shared
3270	export MP_CPU_USE=multiple
3271	export MP_TIMEOUT=1200
3272
3273	unset MP_TASK_AFFINITY
3274
3275	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3276	#(( ii = 1 ))
3277	#while (( ii <= $numprocs ))
3278	#do
3279	# echo $localhost_realname >> hostfile
3280	# (( ii = ii + 1 ))
3281	#done
3282	#export MP_HOSTFILE=hostfile
3283
3284	if [[ "$LOADLBATCH" = yes ]]
3285	then
3286	totalview poe a.out $ROPTS
3287	else
3288	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3289	export TVDSVRLAUNCHCMD=ssh
3290	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3291	fi
3292	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3293	then
3294	# CURRENTLY NO DEBUGGER ON LCSGI
3295	if [[ $run_coupled_model = true ]]
3296	then
3297	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3298	locat=debug
3299	exit
3300	else
3301	echo "no_coupling" > runfile_atmos
3302	fi
3303	(( ii = $numprocs / $threads_per_task ))
3304	export OMP_NUM_THREADS=$threads_per_task
3305	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3306	if [[ $threads_per_task != 1 ]]
3307	then
3308	printf "\n threads per task: $threads_per_task"
3309	fi
3310	printf "\n\n"
3311	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3312	then
3313	# export MPI_LAUNCH_TIMEOUT=360
3314	if [[ "$totalview" = true ]]
3315	then
3316	printf "\n running totalview debugger"
3317	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3318	else
3319	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3320	fi
3321	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3322	then
3323	# ulimit -s 300000 # A too large stack size causes problems
3324	# export MV2_NUM_PORTS=2
3325	# export MV2_CPU_MAPPING=0:1:2:3
3326	if [[ "$totalview" = true ]]
3327	then
3328	printf "\n running totalview debugger"
3329	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3330	else
3331	mpiexec ./a.out $ROPTS < runfile_atmos
3332	fi
3333	fi
3334	else
3335	printf "\n +++ no debug available on \"$localhost\" "
3336	printf "\n or not implemented in mrun so far"
3337	locat=debug
3338	exit
3339	fi
3340
3341	# end debug mode
3342	else
3343
3344	# normal execution
3345	if [[ -n $numprocs ]]
3346	then
3347	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3348	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3349	then
3350	# SETUP THE IBM MPI ENVIRONMENT
3351	if [[ $host != ibmh && $host != ibmkisti ]]
3352	then
3353	export MP_SHARED_MEMORY=yes
3354	export AIXTHREAD_SCOPE=S
3355	export OMP_NUM_THREADS=$threads_per_task
3356	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3357	export AUTHSTATE=files
3358	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3359	# export MP_PRINTENV=yes
3360
3361	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3362	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3363	export MP_WAIT_MODE=poll
3364	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3365	fi
3366
3367	if [[ $host = ibmkisti ]]
3368	then
3369	export LANG=en_US
3370	export MP_SHARED_MEMORY=yes
3371	if [[ $threads_per_task = 1 ]]
3372	then
3373	export MP_SINGLE_THREAD=yes
3374	export MEMORY_AFFINITY=MCM
3375	else
3376	export OMP_NUM_THREADS=$threads_per_task
3377	fi
3378	fi
3379
3380	if [[ "$LOADLBATCH" = yes ]]
3381	then
3382	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3383	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3384	then
3385	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3386	else
3387	if [[ $run_coupled_model = false ]]
3388	then
3389	if [[ "$ocean_file_appendix" = true ]]
3390	then
3391	echo "precursor_ocean" > runfile_atmos
3392	else
3393	echo "precursor_atmos" > runfile_atmos
3394	fi
3395	else
3396	(( iia = $numprocs_atmos / $threads_per_task ))
3397	(( iio = $numprocs_ocean / $threads_per_task ))
3398	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3399	printf "\n using $coupled_mode coupling"
3400	printf "\n\n"
3401	echo "coupled_run $iia $iio" > runfile_atmos
3402	fi
3403	poe ./a.out $ROPTS < runfile_atmos
3404	fi
3405	else
3406	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3407	then
3408	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3409	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3410	then
3411	if [[ -f $hostfile ]]
3412	then
3413	cp $hostfile hostfile
3414	else
3415	(( ii = 1 ))
3416	while (( ii <= $numprocs ))
3417	do
3418	echo $localhost_realname >> hostfile
3419	(( ii = ii + 1 ))
3420	done
3421	fi
3422	export MP_HOSTFILE=hostfile
3423	if [[ $run_coupled_model = false ]]
3424	then
3425	if [[ "$ocean_file_appendix" = true ]]
3426	then
3427	echo "precursor_ocean" > runfile_atmos
3428	else
3429	echo "precursor_atmos" > runfile_atmos
3430	fi
3431	else
3432	(( iia = $numprocs_atmos / $threads_per_task ))
3433	(( iio = $numprocs_ocean / $threads_per_task ))
3434	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3435	printf "\n using $coupled_mode coupling"
3436	printf "\n\n"
3437	echo "coupled_run $iia $iio" > runfile_atmos
3438	fi
3439	if [[ $localhost = ibmy ]]
3440	then
3441	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3442	else
3443	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3444	fi
3445
3446	else
3447	if [[ "$host_file" = "" ]]
3448	then
3449	printf "\n +++ no hostfile given in configuration file"
3450	locat=config_file
3451	exit
3452	else
3453	eval host_file=$host_file
3454	fi
3455	export MP_HOSTFILE=$host_file
3456	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3457	fi
3458	fi
3459	elif [[ $host = nech \|\| $host = necriam ]]
3460	then
3461	(( ii = nodes ))
3462	if [[ $ii = 1 ]]
3463	then
3464	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3465	export MPIPROGINF=YES
3466	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3467	echo "*** execution on single node with mpirun"
3468	mpirun -np $numprocs ./a.out $ROPTS
3469	else
3470	(( i = 0 ))
3471	while (( i < ii ))
3472	do
3473	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3474	(( i = i + 1 ))
3475	done
3476
3477	echo "#!/bin/sh" > mpi_exec_shell
3478	echo " " >> mpi_exec_shell
3479	echo "set -u" >> mpi_exec_shell
3480	echo "F_ERRCNT=0" >> mpi_exec_shell
3481	echo "MPIPROGINV=YES" >> mpi_exec_shell
3482	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3483	echo "cpurest=$cpurest" >> mpi_exec_shell
3484	echo "fname=$fname" >> mpi_exec_shell
3485	echo "localhost=$localhost" >> mpi_exec_shell
3486	echo "return_addres=$return_addres" >> mpi_exec_shell
3487	echo "return_username=$return_username" >> mpi_exec_shell
3488	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3489	echo "write_binary=$write_binary" >> mpi_exec_shell
3490	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3491	echo " " >> mpi_exec_shell
3492	echo "export F_ERRCNT" >> mpi_exec_shell
3493	echo "export MPIPROGINV" >> mpi_exec_shell
3494	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3495	echo "export cpurest" >> mpi_exec_shell
3496	echo "export fname" >> mpi_exec_shell
3497	echo "export localhost" >> mpi_exec_shell
3498	echo "export return_addres" >> mpi_exec_shell
3499	echo "export return_username" >> mpi_exec_shell
3500	echo "export tasks_per_node" >> mpi_exec_shell
3501	echo "export write_binary" >> mpi_exec_shell
3502	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3503	echo " " >> mpi_exec_shell
3504	echo "exec ./a.out" >> mpi_exec_shell
3505
3506	chmod u+x mpi_exec_shell
3507	export MPIPROGINF=YES
3508	mpirun -f multinode_config &
3509	wait
3510
3511	fi
3512	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3513	then
3514
3515	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3516	# DOES NOT EXIST
3517	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3518	then
3519	if [[ -f $hostfile ]]
3520	then
3521	cp $hostfile hostfile
3522	(( ii = $numprocs / $threads_per_task ))
3523	else
3524	(( ii = 1 ))
3525	while (( ii <= $numprocs / $threads_per_task ))
3526	do
3527	echo $localhost_realname >> hostfile
3528	(( ii = ii + 1 ))
3529	done
3530	fi
3531	eval zeile=\"`head -n $ii hostfile`\"
3532	printf "\n *** running on: $zeile"
3533	fi
3534
3535	(( ii = $numprocs / $threads_per_task ))
3536	export OMP_NUM_THREADS=$threads_per_task
3537	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3538	if [[ $threads_per_task != 1 ]]
3539	then
3540	# increase stack size to unlimited, because large runs
3541	# may abort otherwise
3542	ulimit -Ss unlimited
3543	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3544	fi
3545	if [[ $run_coupled_model = false ]]
3546	then
3547	if [[ "$ocean_file_appendix" = true ]]
3548	then
3549	echo "precursor_ocean" > runfile_atmos
3550	else
3551	echo "precursor_atmos" > runfile_atmos
3552	fi
3553	printf "\n\n"
3554	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3555	then
3556	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3557	then
3558	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3559	# export MPI_DSM_DISTRIBUTE=1
3560	# MPI_DSM_CPULIST: pin MPI processes to cores
3561	if [[ $use_openmp = false ]]
3562	then
3563	if [[ "$sgi_feature" = ice2 ]]
3564	then
3565	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3566	else
3567	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3568	fi
3569	else
3570	unset MPI_DSM_CPULIST
3571	fi
3572	# MPI_IB_RAILS: use both IB rails on ICE2
3573	export MPI_BUFS_PER_HOST=512
3574	export MPI_IB_RAILS=2
3575	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3576	export MPI_CONNECTIONS_THRESHOLD=8192
3577	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3578	export MPI_TYPE_DEPTH=20
3579	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3580	export MPI_GROUP_MAX=64
3581	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3582	if [[ $use_openmp = true ]]
3583	then
3584	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3585	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3586	else
3587	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3588	fi
3589
3590	# next is test for openmp usage
3591	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3592	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3593	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3594	then
3595	export MV2_NUM_PORTS=2
3596	# The default setting of MV2_CPU_MAPPING gives best results
3597	# export MV2_ENABLE_AFFINITY=1
3598	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3599	# if [[ "$sgi_feature" = ice2 ]]
3600	# then
3601	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3602	# else
3603	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3604	# fi
3605	if [[ $use_openmp = true ]]
3606	then
3607	unset MV2_CPU_MAPPING
3608	export MV2_ENABLE_AFFINITY=0
3609	fi
3610	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3611	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3612	if [[ $use_openmp = true ]]
3613	then
3614	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3615	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3616	else
3617	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3618	fi
3619	elif [[ "$mpilib" = impi ]]
3620	then
3621	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3622	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3623	fi
3624	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3625	then
3626	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3627	elif [[ $host = lcflow ]]
3628	then
3629	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3630	elif [[ $host = lcsb ]]
3631	then
3632	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3633	elif [[ $host = lckiaps ]]
3634	then
3635	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3636	elif [[ $host = lckyu* ]]
3637	then
3638	mpiexec -n $ii ./a.out < runfile_atmos $ROPTS
3639	else
3640	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3641	fi
3642	else
3643
3644	# currently there is no full MPI-2 support on ICE and XT4
3645	(( iia = $numprocs_atmos / $threads_per_task ))
3646	(( iio = $numprocs_ocean / $threads_per_task ))
3647	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3648	printf "\n using $coupled_mode coupling"
3649	printf "\n\n"
3650
3651	if [[ $coupled_mode = "mpi2" ]]
3652	then
3653	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3654	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3655	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3656	then
3657
3658	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3659	then
3660	# export MPI_LAUNCH_TIMEOUT=360
3661	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3662	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3663	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3664	then
3665	# ulimit -s 300000 # A too large stack size causes problems
3666	# export MV2_NUM_PORTS=2
3667	# export MV2_CPU_MAPPING=0:1:2:3
3668	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3669	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3670	fi
3671
3672	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3673	then
3674
3675	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3676	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3677
3678	else
3679	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3680	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3681	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3682	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3683	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3684	fi
3685	wait
3686
3687	else
3688
3689	echo "coupled_run $iia $iio" > runfile_atmos
3690	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3691	then
3692
3693	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3694	then
3695	# export MPI_LAUNCH_TIMEOUT=360
3696	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3697	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3698	then
3699	# ulimit -s 300000 # A too large stack size causes problems
3700	# export MV2_NUM_PORTS=2
3701	# export MV2_CPU_MAPPING=0:1:2:3
3702	mpiexec ./a.out $ROPTS < runfile_atmos
3703	fi
3704
3705	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3706	then
3707
3708	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3709
3710	elif [[ $host = lck \|\| $host = lckordi ]]
3711	then
3712	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3713	fi
3714	wait
3715	fi
3716
3717	fi
3718	elif [[ $host = lckyoto ]]
3719	then
3720	set -xv
3721	export P4_RSHCOMMAND=plesh
3722	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3723	if [[ "$ENVIRONMENT" = BATCH ]]
3724	then
3725	if [[ "$cond2" = fujitsu ]]
3726	then
3727	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3728	elif [[ "cond2" = pgi ]]
3729	then
3730	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3731	else
3732	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3733	fi
3734	else
3735	if [[ "$cond2" = "" ]]
3736	then
3737	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3738	else
3739	mpirun -np $numprocs ./a.out $ROPTS
3740	fi
3741	fi
3742	set +xv
3743	elif [[ $host = lctit ]]
3744	then
3745	export OMP_NUM_THREADS=$threads_per_task
3746	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3747	if [[ "$threads_per_task" != 1 ]]
3748	then
3749	export MV2_ENABLE_AFFINITY=0
3750	fi
3751	echo "----- PBS_NODEFILE content:"
3752	cat $PBS_NODEFILE
3753	echo "-----"
3754	(( ii = $numprocs / $threads_per_task ))
3755	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3756	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3757	else
3758	mpprun -n $numprocs a.out $ROPTS
3759	fi
3760	[[ $? != 0 ]] && execution_error=true
3761
3762
3763	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3764	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3765	then
3766	apprentice
3767	fi
3768	else
3769	a.out $ROPTS
3770	fi
3771	fi
3772	if [[ $? != 0 \|\| $execution_error = true ]]
3773	then
3774
3775	# ABBRUCH BEI LAUFZEITFEHLER
3776	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3777	printf "\n +++ runtime error occured"
3778	locat=execution
3779	exit
3780	else
3781	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3782	printf "\n$striche\n *** execution finished \n"
3783
3784	# Stop the dvr streaming server and process the dvr output in order
3785	# to create dvrs- and html-files containing all streams
3786	if [[ "$dvrserver_id" != "" ]]
3787	then
3788	kill $dvrserver_id
3789	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3790
3791	# If there is a directory, data have been output by the
3792	# streaming server. Otherwise, user has chosen dvrp_output=local
3793	if [[ -d DATA_DVR ]]
3794	then
3795
3796	# Add the current dvr configuration file to the dvr output
3797	# directory
3798	cp .dvrserver.config DATA_DVR
3799
3800	# Process the dvr output (option -s for also generating
3801	# sequence mode data)
3802	process_dvr_output -d DATA_DVR -f $fname -s
3803
3804	else
3805
3806	# Process the local output
3807	process_dvr_output -l -d DATA_DVR -f $fname
3808
3809	fi
3810
3811	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3812	then
3813
3814	# Process dvr output generated in local mode (dvrp_output=local)
3815	process_dvr_output -l -d DATA_DVR -f $fname
3816
3817	fi
3818	fi
3819
3820
3821
3822	# Call of combine_plot_fields in order to merge single files written
3823	# by each PE into one file.
3824	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3825	then
3826	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3827	printf "\n 2d- and/or 3d-data may be incomplete!"
3828	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3829	elif [[ "$combine_plot_fields" == true ]]
3830	then
3831	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3832	combine_plot_fields${block}.x
3833	else
3834	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3835	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3836	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3837	fi
3838
3839
3840
3841	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3842	(( i = 0 ))
3843	while (( i < ioc ))
3844	do
3845	(( i = i + 1 ))
3846	if (( i == 1 ))
3847	then
3848	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3849	fi
3850	printf "\n >>> ${out_command[$i]}"
3851	eval ${out_command[$i]}
3852	if (( i == ioc ))
3853	then
3854	printf "\n$striche\n"
3855	fi
3856	done
3857
3858
3859	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3860	if [[ $do_trace = true ]]
3861	then
3862	printf "\n\n"
3863	ls -al
3864	fi
3865
3866
3867
3868	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3869	(( i = 0 ))
3870	while (( i < iout ))
3871	do
3872	(( i = i + 1 ))
3873	if (( i == 1 ))
3874	then
3875	printf "\n\n *** saving OUTPUT-files:\n$striche"
3876	fi
3877
3878	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3879	files_for_pes=false; filetyp=file
3880	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3881	then
3882	files_for_pes=true; filetyp=directory
3883	actionout[$i]=""
3884	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3885	then
3886	actionout[$i]=""
3887	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3888	then
3889	files_for_pes=true; filetyp=directory
3890	actionout[$i]="ar"
3891	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3892	then
3893	actionout[$i]="ar"
3894	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3895	then
3896	files_for_pes=true; filetyp=directory
3897	actionout[$i]="fl"
3898	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3899	then
3900	actionout[$i]="fl"
3901	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3902	then
3903	files_for_pes=true; filetyp=directory
3904	actionout[$i]="tr"
3905	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3906	then
3907	actionout[$i]="tr"
3908	fi
3909
3910	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3911	then
3912	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3913	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3914	then
3915	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3916	else
3917
3918
3919	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3920	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3921	# REMOTE-RECHNUNGEN
3922	if [[ "${actionout[$i]}" = tr ]]
3923	then
3924	if [[ $localhost != $fromhost ]]
3925	then
3926	if [[ $files_for_pes = false ]]
3927	then
3928	cps=""
3929	cst=""
3930	else
3931	cps=-c
3932	cst="/"
3933	fi
3934	if [[ $localhost = nech ]]
3935	then
3936
3937	# TRANSFER IN EIGENSTAENDIGEM JOB
3938	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3939	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3940	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3941	if [[ $files_for_pes = false ]]
3942	then
3943	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3944	else
3945	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3946	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3947	fi
3948
3949	echo "set -x" > transfer_${localout[$i]}
3950	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3951
3952	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3953	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3954	printf "\n or higher cycle\n"
3955	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3956
3957	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3958
3959	if [[ $localhost = nech ]]
3960	then
3961	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3962	else
3963	if [[ "$LOGNAME" = b323013 ]]
3964	then
3965	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3966	else
3967	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3968	fi
3969	fi
3970
3971	else
3972
3973	# TRANSFER INNERHALB DIESES JOBS
3974	transfer_failed=false
3975	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3976	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3977	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3978	[[ $? != 0 ]] && transfer_failed=true
3979
3980	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3981	# LOKALER MASCHINE ANLEGEN
3982	if [[ $transfer_failed = true ]]
3983	then
3984	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3985	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3986
3987	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3988	# ANLEGEN.
3989	eval local_catalog=${pathout[$i]}
3990	if [[ ! -d $local_catalog ]]
3991	then
3992	printf " *** local directory does not exist. Trying to create:\n"
3993	printf " $local_catalog \n"
3994	mkdir -p $local_catalog
3995	fi
3996	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3997	transfer_problems=true
3998	fi
3999	fi
4000	else
4001
4002	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4003	actionout[$i]=""
4004	fi
4005	fi
4006
4007
4008	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4009	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4010	# REMOTE-RECHNUNGEN
4011	if [[ "${actionout[$i]}" = tra ]]
4012	then
4013	if [[ $localhost != $fromhost ]]
4014	then
4015	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4016	then
4017
4018	# TRANSFER IN EIGENSTAENDIGEM JOB
4019	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4020	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4021	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4022	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4023
4024	echo "set -x" > transfer_${localout[$i]}
4025	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4026
4027	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4028	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4029	printf "\n or higher cycle\n"
4030	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4031
4032	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4033
4034	if [[ $localhost = nech ]]
4035	then
4036	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4037	else
4038	if [[ $LOGNAME = b323013 ]]
4039	then
4040	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4041	else
4042	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4043	fi
4044	fi
4045
4046	else
4047
4048	# TRANSFER INNERHALB DIESES JOBS
4049	transfer_failed=false
4050	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4051	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4052	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4053	[[ $? != 0 ]] && transfer_failed=true
4054
4055	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4056	# LOKALER MASCHINE ANLEGEN
4057	if [[ $transfer_failed = true ]]
4058	then
4059	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4060	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4061
4062	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4063	# ANLEGEN
4064	eval local_catalog=${pathout[$i]}
4065	if [[ ! -d $local_catalog ]]
4066	then
4067	printf " *** local directory does not exist. Trying to create:\n"
4068	printf " $local_catalog \n"
4069	mkdir -p $local_catalog
4070	fi
4071
4072	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4073	transfer_problems=true
4074	fi
4075	fi
4076	else
4077
4078	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4079	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4080	actionout[$i]=a
4081	fi
4082	fi
4083
4084
4085	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4086	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4087	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4088	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4089	if [[ "${actionout[$i]}" = fl ]]
4090	then
4091	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4092	chmod g+rx $tmp_data_catalog
4093	if [[ $files_for_pes = false ]]
4094	then
4095	printf "\n >>> OUTPUT: ${localout[$i]} to"
4096	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4097	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4098	else
4099	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4100	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4101	mkdir $tmp_data_catalog/${frelout[$i]}
4102	cd ${localout[$i]}
4103	for file in $(ls *)
4104	do
4105	ln -f $file $tmp_data_catalog/${frelout[$i]}
4106	done
4107	cd $TEMPDIR
4108	fi
4109
4110
4111	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4112	if [[ $store_on_archive_system = true ]]
4113	then
4114
4115	if [[ $archive_system = asterix ]]
4116	then
4117	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4118	if [[ $files_for_pes = false ]]
4119	then
4120	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4121	else
4122	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4123	fi
4124	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4125	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4126	echo "then" >> archive_${frelout[$i]}
4127	echo " do_stageout=false" >> archive_${frelout[$i]}
4128	echo "else" >> archive_${frelout[$i]}
4129	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4130	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4131	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4132	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4133	if [[ $files_for_pes = false ]]
4134	then
4135	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4136	else
4137	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4138	fi
4139	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4140	echo "fi" >> archive_${frelout[$i]}
4141	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4142	elif [[ $archive_system = DMF ]]
4143	then
4144	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4145	if [[ $files_for_pes = false ]]
4146	then
4147	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4148	locat=DMF
4149	exit
4150	else
4151	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4152	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4153	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4154	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4155	fi
4156	elif [[ $archive_system = tivoli ]]
4157	then
4158	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4159	if [[ $files_for_pes = false ]]
4160	then
4161	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4162	echo "set -x" >> archive_${frelout[$i]}
4163	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4164	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4165	else
4166
4167	echo "set -x" >> archive_${frelout[$i]}
4168	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4169	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4170	cd $tmp_data_catalog
4171	all_files=`ls -1 ${frelout[$i]}/*`
4172	cd - > /dev/null
4173	(( inode = 0 ))
4174	(( tp1 = tasks_per_node + 1 ))
4175	while (( inode < nodes ))
4176	do
4177	# echo "*** all_files = \"$all_files\" "
4178	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4179	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4180	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4181	# echo "*** files = \"$files\" "
4182	# echo "*** all_files = \"$all_files\" "
4183	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4184	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4185	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4186	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4187	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4188	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4189	(( inode = inode + 1 ))
4190	done
4191	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4192	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4193	fi
4194	elif [[ $archive_system = ut ]]
4195	then
4196	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4197	if [[ $files_for_pes = false ]]
4198	then
4199	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4200	echo "set -x" >> archive_${frelout[$i]}
4201	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4202	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4203	else
4204
4205	echo "set -x" >> archive_${frelout[$i]}
4206	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4207	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4208	cd $tmp_data_catalog
4209	all_files=`ls -1 ${frelout[$i]}/*`
4210	cd - > /dev/null
4211	(( inode = 0 ))
4212	(( tp1 = tasks_per_node + 1 ))
4213	while (( inode < nodes ))
4214	do
4215	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4216	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4217	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4218	(( inode = inode + 1 ))
4219	done
4220	fi
4221	elif [[ $archive_system = none ]]
4222	then
4223	printf " +++ archiving on $localhost not available!\n"
4224	fi
4225
4226	if [[ $archive_system != none ]]
4227	then
4228	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4229	then
4230	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4231	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4232	elif [[ $localhost = nech ]]
4233	then
4234	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4235	fi
4236	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4237	fi
4238	else
4239	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4240	fi
4241
4242
4243	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4244	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4245	if [[ $files_for_pes = false ]]
4246	then
4247	cat /dev/null > ${pathout[$i]}
4248	else
4249	mkdir -p ${pathout[$i]}
4250	fi
4251
4252	fi
4253
4254
4255	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4256	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4257	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4258	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4259	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4260	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4261	if [[ "${actionout[$i]}" = ar ]]
4262	then
4263	if [[ $files_for_pes = false ]]
4264	then
4265	printf "\n >>> OUTPUT: ${localout[$i]} to"
4266	printf "\n ${pathout[$i]}"
4267	printf "\n File will be copied to archive-system ($archive_system) !\n"
4268	else
4269	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4270	printf "\n ${pathout[$i]}"
4271	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4272	fi
4273	mv ${localout[$i]} ${frelout[$i]}
4274
4275	file_saved=false
4276
4277	if [[ $archive_system = asterix ]]
4278	then
4279	do_stageout=true
4280	(( stageout_anz = 0 ))
4281	while [[ $do_stageout = true ]]
4282	do
4283	if [[ $files_for_pes = false ]]
4284	then
4285	stageout ${frelout[$i]} > STAGE_OUTPUT
4286	else
4287	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4288	fi
4289	cat STAGE_OUTPUT
4290	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4291	then
4292	file_saved=true
4293	do_stageout=false
4294	else
4295	if [[ $files_for_pes = false ]]
4296	then
4297	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4298	else
4299	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4300	fi
4301	(( stageout_anz = stageout_anz + 1 ))
4302	if (( stageout_anz == 10 ))
4303	then
4304	printf "\n +++ stoped after 10 unsuccessful tries!"
4305	archive_save=false
4306	do_stageout=false
4307	else
4308	printf "\n *** new try to store on archive after 15 min:"
4309	sleep 900
4310	fi
4311	fi
4312	done
4313	elif [[ $archive_system = DMF ]]
4314	then
4315	if [[ $files_for_pes = false ]]
4316	then
4317	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4318	locat=DMF
4319	exit
4320	else
4321	rm -rf $ARCHIVE/${frelout[$i]}
4322	cp -r ${frelout[$i]} $ARCHIVE
4323	fi
4324	file_saved=true
4325	elif [[ $archive_system = tivoli ]]
4326	then
4327	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4328	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4329	# GELEGT WERDEN
4330	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4331	chmod g+rx $tmp_data_catalog
4332	if [[ $files_for_pes = false ]]
4333	then
4334	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4335	else
4336	mkdir $tmp_data_catalog/${frelout[$i]}
4337	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4338	fi
4339
4340	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4341	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4342	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4343	if [[ $files_for_pes = false ]]
4344	then
4345	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4346	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4347	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4348	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4349	else
4350	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4351	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4352	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4353	fi
4354
4355	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4356	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4357	file_saved=true
4358
4359	elif [[ $archive_system = ut ]]
4360	then
4361	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4362	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4363	# GELEGT WERDEN
4364	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4365	chmod g+rx $tmp_data_catalog
4366	if [[ $files_for_pes = false ]]
4367	then
4368	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4369	else
4370	mkdir $tmp_data_catalog/${frelout[$i]}
4371	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4372	fi
4373
4374	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4375	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4376	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4377	if [[ $files_for_pes = false ]]
4378	then
4379	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4380	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4381	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4382	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4383	else
4384	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4385	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4386	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4387	fi
4388
4389	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4390	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4391	file_saved=true
4392
4393	else
4394	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4395	archive_save=false
4396	fi
4397	if [[ $file_saved = true ]]
4398	then
4399	if [[ $files_for_pes = false ]]
4400	then
4401	cat /dev/null > ${pathout[$i]}
4402	else
4403	mkdir -p ${pathout[$i]}
4404	fi
4405	fi
4406	fi
4407
4408	# APPEND AUF LOKALER MASCHINE
4409	if [[ "${actionout[$i]}" = "a" ]]
4410	then
4411	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4412	then
4413	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4414	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4415	else
4416	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4417	cat ${localout[$i]} >> ${pathout[$i]}
4418	fi
4419	fi
4420
4421	# KOPIEREN AUF LOKALER MASCHINE
4422	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4423	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4424	then
4425
4426	# KOPIEREN AUF EINPROZESSORMASCHINE
4427	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4428	then
4429	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4430	if [[ $link_local_output = true ]]
4431	then
4432	printf " using ln -f\n"
4433	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4434	fi
4435	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4436	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4437	then
4438	if [[ $link_local_output = true ]]
4439	then
4440	printf " ln failed, using cp...\n"
4441	fi
4442	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4443	fi
4444	else
4445	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4446	if [[ $link_local_output = true ]]
4447	then
4448	printf " using ln -f\n"
4449	ln -f ${localout[$i]} ${pathout[$i]}
4450	fi
4451	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4452	if [[ ! -f "${pathout[$i]}" ]]
4453	then
4454	if [[ $link_local_output = true ]]
4455	then
4456	printf " ln failed, using cp...\n"
4457	fi
4458	cp ${localout[$i]} ${pathout[$i]}
4459	fi
4460	fi
4461
4462	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4463	then
4464
4465	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4466	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4467	# WIRD DANN KOPIERT
4468	# PER MOVE UMBENANNT WERDEN
4469	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4470	if [[ $link_local_output = true ]]
4471	then
4472	printf " using ln -f\n"
4473	mkdir ${pathout[$i]}
4474	cd ${localout[$i]}
4475	for file in $(ls *)
4476	do
4477	ln -f $file ${pathout[$i]}
4478	done
4479	cd $TEMPDIR
4480	fi
4481	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4482	if [[ ! -f "${pathout[$i]}/_0000" ]]
4483	then
4484	if [[ $link_local_output = true ]]
4485	then
4486	printf " ln failed for .../_0000, using cp...\n"
4487	fi
4488	cp -r ${localout[$i]} ${pathout[$i]}
4489	fi
4490
4491	fi
4492	fi
4493	done
4494	if (( i != 0 ))
4495	then
4496	if [[ $transfer_problems = true ]]
4497	then
4498	printf "\n$striche\n *** OUTPUT-files saved"
4499	printf "\n +++ WARNING: some data transfers failed! \n"
4500	else
4501	printf "\n$striche\n *** all OUTPUT-files saved \n"
4502	fi
4503	fi
4504
4505
4506	# EVENTUELL FOLGEJOB STARTEN
4507	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4508	if [[ -f CONTINUE_RUN ]]
4509	then
4510
4511	if [[ $archive_save = true ]]
4512	then
4513
4514	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4515	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4516	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4517	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4518	# HANDEN
4519	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4520	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4521	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4522	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4523	then
4524	mc=`echo $mc \| sed 's/#/f/g'`
4525	fi
4526
4527
4528	# JOB STARTEN
4529	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4530	echo " $mc"
4531	printf "\n$striche\n"
4532	if [[ $localhost != $fromhost ]]
4533	then
4534
4535	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4536	then
4537	echo "*** ssh will be used to initiate restart-runs!"
4538	echo " return_addres=\"$return_addres\" "
4539	echo " return_username=\"$return_username\" "
4540	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4541	then
4542	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4543	else
4544	if [[ $localhost = ibmkisti ]]
4545	then
4546	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4547	else
4548	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4549	fi
4550	fi
4551	else
4552	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4553	locat=restart; exit
4554	fi
4555
4556	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4557	# DER AKTUELLE JOB ENDET
4558	if [[ $queue = special1q ]]
4559	then
4560	sleep 120
4561	else
4562	sleep 30
4563	fi
4564
4565	else
4566
4567	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4568	# RUFEN WERDEN, AUSSER AUF lcfimm
4569	cd $LOCAL_PWD
4570	if [[ $localhost = lcfimm ]]
4571	then
4572	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4573	else
4574	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4575	fi
4576	cd - > /dev/null
4577	fi
4578	printf "\n$striche\n *** restart-run initiated \n"
4579
4580
4581	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4582	# GEHOLT WORDEN SIND, LOESCHEN
4583	(( i = 0 ))
4584	while (( i < iin ))
4585	do
4586	(( i = i + 1 ))
4587	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4588	then
4589	rm -r $tmp_data_catalog/${frelin[$i]}
4590	fi
4591	done
4592
4593	else
4594
4595	printf "\n +++ no restart-run possible, since errors occured"
4596	printf "\n during the archive process"
4597	fi
4598
4599	fi
4600
4601
4602
4603	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4604	if [[ "$email_notification" != "none" ]]
4605	then
4606
4607	if [[ $localhost != $fromhost ]]
4608	then
4609	if [[ -f CONTINUE_RUN ]]
4610	then
4611	echo "PALM restart run necessary" > email_text
4612	echo "description header of actual run:" >> email_text
4613	cat CONTINUE_RUN >> email_text
4614	echo "mrun-command to restart:" >> email_text
4615	echo "$mc" >> email_text
4616	else
4617	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4618	fi
4619	mail $email_notification < email_text
4620	printf "\n *** email notification sent to \"$email_notification\" "
4621	fi
4622	fi
4623
4624
4625
4626	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4627	cd $HOME
4628	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4629
4630	else
4631
4632
4633	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4634	# CHENDE AKTIONEN DURCHGEFUEHRT
4635
4636	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4637	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4638	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4639	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4640	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4641	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4642	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4643	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4644	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4645	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4646	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4647	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4648	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4649	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4650	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4651	if [[ $use_openmp = true ]]
4652	then
4653	mrun_com=${mrun_com}" -O $threads_per_task"
4654	fi
4655	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4656	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4657	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4658	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4659	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4660	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4661	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4662	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4663	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4664	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4665	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4666	if [[ $do_remote = true ]]
4667	then
4668	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4669	fi
4670
4671
4672	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4673	jobfile=jobfile.$RANDOM
4674
4675
4676	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4677	echo "mkdir $TEMPDIR" >> $jobfile
4678	echo "cd $TEMPDIR" >> $jobfile
4679
4680
4681	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4682	if [[ $do_trace = true ]]
4683	then
4684	echo "set -x" >> $jobfile
4685	else
4686	echo "set +vx" >> $jobfile
4687	fi
4688
4689
4690	# initialize the environment and load modules
4691	if [[ "$init_cmds" != "" ]]
4692	then
4693	echo "$init_cmds" >> $jobfile
4694	fi
4695	if [[ "$module_calls" != "" ]]
4696	then
4697	echo "$module_calls" >> $jobfile
4698	fi
4699
4700
4701	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4702	# DATEI FUER DEN JOB
4703	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4704	then
4705
4706	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4707	# KOPIEREN
4708	if [[ $restart_run != true ]]
4709	then
4710	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4711	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4712	fi
4713
4714	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4715	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4716	echo "set -x" >> $jobfile
4717	if [[ $host = $localhost ]]
4718	then
4719	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4720	else
4721	if [[ $host != ibmkisti ]]
4722	then
4723	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4724	else
4725	# on KISTI's IBM firewall is only opened on interactive node
4726	echo "localdir=\`pwd\`" >> $jobfile
4727	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4728	fi
4729	fi
4730	echo "export SOURCES_COMPLETE=true" >> $jobfile
4731
4732	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4733	# ARBEITSVERZEICHNIS VERSCHIEBEN
4734	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4735	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4736	echo "execute_mrun=true" >> $jobfile
4737	echo " " >> $jobfile
4738
4739	else
4740
4741	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4742	# SOWIE GEGEBENENFALLS DES MAKEFILES
4743	if [[ $do_compile = true ]]
4744	then
4745
4746	source_catalog=SOURCES_FOR_RUN_$fname
4747
4748	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4749	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4750	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4751	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4752	echo "export SOURCES_COMPLETE=true" >> $jobfile
4753	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4754
4755	for filename in $source_list
4756	do
4757	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4758	echo "cat > $filename << \"%END%\"" >> $jobfile
4759	cat $source_catalog/$filename >> $jobfile
4760	echo " " >> $jobfile
4761	echo "%END%" >> $jobfile
4762	echo " " >> $jobfile
4763	done
4764
4765	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4766	echo "cat > Makefile << \"%END%\"" >> $jobfile
4767	cat $source_catalog/Makefile >> $jobfile
4768	echo " " >> $jobfile
4769	echo "%END%" >> $jobfile
4770	echo " " >> $jobfile
4771
4772	echo "cd - > /dev/null" >> $jobfile
4773
4774	fi
4775
4776
4777	# ABSPEICHERN DER KONFIGURATIONSDATEI
4778	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4779	# Lines with #$ coming from the svn keyword substitution are
4780	# removed from the config file in order to avoid problems
4781	# with the SGE batch system
4782	echo "cat > $config_file << \"%END%\"" >> $jobfile
4783	sed 's/#$.*//g' $config_file >> $jobfile
4784	echo "%END%" >> $jobfile
4785	echo " " >> $jobfile
4786
4787
4788	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4789	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4790	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4791	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4792	echo "%END%" >> $jobfile
4793	echo "chmod u+x $mrun_script_name" >> $jobfile
4794	echo "execute_mrun=true" >> $jobfile
4795	echo " " >> $jobfile
4796
4797	fi
4798
4799
4800	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4801	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4802	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4803	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4804	if [[ $do_remote = true ]]
4805	then
4806	(( i = 0 ))
4807	while (( i < iin ))
4808	do
4809	(( i = i + 1 ))
4810	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4811	if [[ "${transin[$i]}" = job ]]
4812	then
4813	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4814	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4815	echo " " >> $jobfile
4816	echo "%END%" >> $jobfile
4817	else
4818	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4819	fi
4820
4821	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4822	echo "if [[ \$? = 1 ]]" >> $jobfile
4823	echo "then" >> $jobfile
4824	echo " echo \" \" " >> $jobfile
4825	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4826	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4827	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4828	echo " execute_mrun=false" >> $jobfile
4829	echo "fi" >> $jobfile
4830	done
4831	fi
4832
4833	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4834	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4835	echo "LOCAL_PWD=$working_directory" >> $jobfile
4836	echo "export LOCAL_PWD" >> $jobfile
4837
4838	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4839	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4840	echo "export LOCAL_MRUN_PATH" >> $jobfile
4841
4842	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4843	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4844	then
4845	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4846	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4847	then
4848	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4849	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4850	fi
4851
4852	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4853	echo "set -x" >> $jobfile
4854	echo "queue=$queue" >> $jobfile
4855	# echo "echo \"*** shell test\" " >> $jobfile
4856	# echo "which ksh" >> $jobfile
4857	# echo "ls -al /bin" >> $jobfile
4858	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4859
4860	echo 'ls -al; echo `pwd`' >> $jobfile
4861	echo "cd \$HOME" >> $jobfile
4862	echo "rm -rf $TEMPDIR" >> $jobfile
4863
4864
4865
4866
4867	# JOB PER SUBJOB STARTEN
4868	if [[ $silent = false ]]
4869	then
4870	printf "\n "
4871	else
4872	printf "\n\n"
4873	fi
4874
4875	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4876	rm -rf $jobfile
4877
4878
4879	fi # ENDE REMOTE-TEIL
4880
4881
4882
4883	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |