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source: palm/trunk/SCRIPTS/mrun @ 1099

Last change on this file since 1099 was 1099, checked in by raasch, 11 years ago
adjustments for Forwind cluster (lcflow) and Kuyshu University computing center (hayaka -lckyuh); further small adjustments for lckyut
Property svn:keywords set to `Id Rev`
File size: 177.3 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
25	# and for Forwind cluster (lcflow)
26	# small further adjustments for lckyut
27	#
28	# Former revisions:
29	# -----------------
30	# $Id: mrun 1099 2013-02-10 01:47:43Z raasch $
31	#
32	# 1094 2013-02-03 01:52:12Z raasch
33	# explicit ssh/scp port can be set in config file with environment variable
34	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
35	# decalpha parts (yonsei) removed
36	#
37	# 2013-02-02 07:06:13Z raasch
38	# adjustments for Kyushu-University computing center (lckyut - tatara)
39	#
40	# 1083 2013-01-04 10:22:09Z maronga
41	# bugfix in parameter file check (read %cpp_options was missing)
42	#
43	# 1069 2012-11-28 16:18:43Z maronga
44	# bugfix: coupling mode was always set to mpi2, typos removed
45	#
46	# 1058 2012-11-21 07:00:35Z raasch
47	# Intel inspector (inspxe) is given the number of PEs instead of the number of
48	# nodes
49	#
50	# 1046 2012-11-09 14:38:45Z maronga
51	# code put under GPL (PALM 3.9)
52	#
53	# 21/03/94 - Siggi - first version finished
54	# 03/03/94 - Siggi - script development started
55	#
56	#--------------------------------------------------------------------------------#
57	# mrun - script for running PALM jobs
58	#--------------------------------------------------------------------------------#
59
60
61
62	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
63
64	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
65	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
66	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
67
68	AddFilenames=""
69	additional_conditions=""
70	add_source_path=""
71	afname=""
72	archive_save=true
73	archive_system=none
74	check_namelist_files=true
75	combine_plot_fields=true
76	compiler_name=""
77	cond1=""
78	cond2=""
79	config_file=.mrun.config
80	coupled_dist=""
81	coupled_mode="mpi1"
82	cpp_opts=""
83	cpp_options=""
84	cpumax=0
85	cpurest=0
86	delete_temporary_catalog=true
87	do_batch=false
88	do_compile=true
89	do_remote=false
90	do_stagein=true
91	do_stageout=true
92	do_trace=false
93	email_notification="none"
94	exclude=""
95	executable=""
96	execution_error=false
97	fimm=false
98	fname=test
99	fromhost=""
100	global_revision=""
101	group_number=none
102	host=""
103	host_file=""
104	hp=""
105	ignore_archive_error=false
106	input_list=""
107	interpreted_config_file=""
108	job_catalog="~/job_queue"
109	job_on_file=""
110	keep_data_from_previous_run=false
111	link_local_input=false
112	link_local_output=false
113	localhost_realname=$(hostname)
114	local_compile=false
115	local_dvrserver_running=.FALSE.
116	locat=normal
117	mainprog=""
118	makefile=""
119	max_par_io_str=""
120	mc=$0
121	while [[ $(echo $mc \| grep -c "/") != 0 ]]
122	do
123	mc=`echo $mc \| cut -f2- -d"/"`
124	done
125	module_calls=""
126	mrun_script_name=$mc
127	netcdf_inc=""
128	netcdf_lib=""
129	netcdf_support=false
130	node_usage=default
131	numprocs=""
132	numprocs_atmos=0
133	numprocs_ocean=0
134	OOPT=""
135	openmp=false
136	output_list=""
137	package_list=""
138	punkte="..........................................................."
139	queue=none
140	read_from_config=""
141	restart_run=false
142	if [[ `hostname` = rte10 ]]
143	then
144	return_addres=133.5.185.60
145	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
146	elif [[ `hostname` = climate0 ]]
147	then
148	return_addres=165.132.26.68
149	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
150	elif [[ `hostname` = urban00 ]]
151	then
152	return_addres=147.46.30.151
153	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
154	else
155	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
156	fi
157	return_password=""
158	return_username=$LOGNAME
159	remotecall=false
160	remote_username=""
161	run_coupled_model=false
162	run_mode=""
163	scirocco=false
164	store_on_archive_system=false
165	striche=" ----------------------------------------------------------------------------"
166	silent=false
167	source_list=""
168	source_path=SOURCE
169	tasks_per_node=""
170	threads_per_task=1
171	tmpcreate=false
172	tmp_data_catalog=""
173	transfer_problems=false
174	usern=$LOGNAME
175	use_openmp=false
176	working_directory=`pwd`
177	TOPT=""
178	XOPT=""
179	zeit=$( date \| cut -c 12-19 )
180
181	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
182	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
183
184	typeset -R30 calltime
185	typeset -L20 spalte1
186	typeset -L40 spalte2
187	typeset -L60 spalte3
188	typeset -L35 string1=`date`
189	typeset -L12 string2=$usern
190	typeset -L12 string3=$localhost_realname
191	typeset -L12 string4
192	typeset -L12 string5
193	typeset -L30 version="MRUN 2.0 Rev$Rev: 1099 $"
194
195
196
197	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
198	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
199
200	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
201	# EXPORTIERT WERDEN
202	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
203	export group_number input_list memory numprocs output_list queue run_mode
204
205
206
207	# FEHLERBEHANDLUNG
208	# BEI EXIT:
209	trap 'rm -rf $working_directory/tmp_mrun
210	if [[ $locat != localhost ]]
211	then
212	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
213	# then
214	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
215	#MRUN-calls on $localhost
216	#
217	#date and time user localhost remotehost termination mrun-command
218	#--------------------------------------------------------------------------------------------------------------------
219	#%STATEND%
220	# chmod 666 ${mrun_path}/statistik/mrun_statistik
221	# fi
222	#
223	# # EINTRAG IN DIE STATISTIK-DATEI
224	# string4=$host
225	# string5=$locat
226	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
227	# then
228	# if [[ $do_batch = true ]]
229	# then
230	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
231	# else
232	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
233	# fi
234	# fi
235	echo " " > /dev/null
236	fi
237
238	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
239	then
240
241	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
242	(( i = 0 ))
243	while (( i < iec ))
244	do
245	(( i = i + 1 ))
246	printf "\n *** Execution of ERROR-command:\n"
247	printf " >>> ${err_command[$i]}\n"
248	eval ${err_command[$i]}
249	done
250	if [[ -n $interpreted_config_file ]] then
251	rm -rf $interpreted_config_file
252	fi
253	if [[ -n .mrun_environment ]] then
254	rm -rf .mrun_environment
255	fi
256	if [[ $tmpcreate = true ]]
257	then
258	printf "\n *** Contents of \"$TEMPDIR\":\n"
259	ls -al; cd
260	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
261	fi
262	if [[ "$dvrserver_id" != "" ]]
263	then
264	echo "+++ killing dvrserver_id=$dvrserver_id"
265	kill $dvrserver_id
266	fi
267	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
268	then
269	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
270	fi
271	printf "\n\n+++ MRUN killed \n\n"
272	elif [[ $locat != control_c ]]
273	then
274	printf "\n\n --> all actions finished\n\n"
275	printf " Bye, bye $usern !!\n\n"
276	fi' exit
277
278
279	# BEI TERMINAL-BREAK:
280	trap 'rm -rf $working_directory/tmp_mrun
281	rm -rf $working_directory/tmp_check_namelist_files
282	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
283	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
284	then
285	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
286	fi
287	if [[ "$dvrserver_id" != "" ]]
288	then
289	echo "+++ killing dvrserver_id=$dvrserver_id"
290	kill $dvrserver_id
291	fi
292	printf "\n+++ MRUN killed by \"^C\" \n\n"
293	locat=control_c
294	exit
295	' 2
296
297
298	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
299	# BEEN SET
300	if [[ "$PALM_BIN" = "" ]]
301	then
302	printf "\n +++ environment variable PALM_BIN has not been set"
303	printf "\n please set it to the directory where the PALM scripts are located"
304	locat=palm_bin; exit
305	fi
306	export PATH=$PALM_BIN:$PATH
307
308
309
310	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
311	# FUER FOLGEJOBS BENOETIGT WIRD
312	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
313	do
314	case $option in
315	(a) afname=$OPTARG;;
316	(A) store_on_archive_system=true; mc="$mc -A";;
317	(b) do_batch=true; mc="$mc -b";;
318	(B) delete_temporary_catalog=false; mc="$mc -B";;
319	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
320	(C) restart_run=true; mc="$mc -C";;
321	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
322	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
323	(F) job_on_file="-D"; mc="$mc -F";;
324	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
325	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
326	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
327	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
328	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
329	(I) ignore_archive_error=true; mc="$mc -I";;
330	(k) keep_data_from_previous_run=true; mc="$mc -k";;
331	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
332	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
333	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
334	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
335	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
336	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
337	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
338	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
339	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
340	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
341	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
342	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
343	(S) read_from_config=false; mc="$mc -S";;
344	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
345	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
346	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
347	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
348	(v) silent=true; mc="$mc -v";;
349	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
350	(x) do_trace=true;set -x; mc="$mc -x";;
351	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
352	(y) ocean_file_appendix=true; mc="$mc -y";;
353	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
354	(z) check_namelist_files=false; mc="$mc -z";;
355	(Z) combine_plot_fields=false; mc="$mc -Z";;
356	(\?) printf "\n +++ unknown option $OPTARG \n"
357	printf "\n --> type \"$0 ?\" for available options \n"
358	locat=parameter;exit;;
359	esac
360	done
361
362
363	# EVTL. POSITIONSPARAMETER EINLESEN
364	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
365	shift OPTIND-1
366
367
368	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
369	if [[ "$1" = "?" ]]
370	then
371	(printf "\n *** mrun can be called as follows:\n"
372	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
373	printf "\n Description of available options:\n"
374	printf "\n Option Description Default-Value"
375	printf "\n -a base name of input files equiv. -d"
376	printf "\n -A archiving when using file-attribute fl"
377	printf "\n -b batch-job on local machine ---"
378	printf "\n -B do not delete temporary directory at end ---"
379	printf "\n -c configuration file .mrun.config"
380	printf "\n -d base name of files attached to program test"
381	printf "\n -D preprocessor(cpp)-directives \"\" "
382	printf "\n -F create remote job file only ---"
383	printf "\n -h execution host $localhost_realname"
384	printf "\n -i INPUT control list \"\" "
385	printf "\n -I archiving errors of previous batch-jobs"
386	printf "\n will be ignored"
387	printf "\n -k keep data from previous run"
388	printf "\n -K additional conditions for controling"
389	printf "\n usage of conditional code and"
390	printf "\n env-variables in configuration file \"\" "
391	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
392	printf "\n -M Makefile name Makefile"
393	printf "\n -n node usage (shared/not_shared) depending on -h"
394	printf "\n -o OUTPUT control list \"\" "
395	printf "\n -O use OpenMP ---"
396	printf "\n -p software package list \"\" "
397	printf "\n -q queue \"$queue\" "
398	printf "\n -r run control list (combines -i -o) \"\" "
399	printf "\n -s filenames of routines to be compiled \"\" "
400	printf "\n must end with .f, .f90, .F, or .c !"
401	printf "\n use \"..\" for more than one file and wildcards"
402	printf "\n -s LM compiles all locally modified files"
403	printf "\n -S config file interpreted by shellscript ---"
404	printf "\n -t allowed cpu-time in seconds (batch) 0"
405	printf "\n -T tasks per node depending on -h"
406	printf "\n -u username on remote machine \"\" "
407	printf "\n -v no prompt for confirmation ---"
408	printf "\n -w maximum parallel io streams as given by -X"
409	printf "\n -x tracing of mrun for debug purposes ---"
410	printf "\n -X # of processors (on parallel machines) 1"
411	printf "\n -y add appendix \"_O\" to all local output"
412	printf "\n files (ocean precursor runs followed by"
413	printf "\n coupled atmosphere-ocean runs) ---"
414	printf "\n -Y run coupled model, \"#1 #2\" with"
415	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
416	printf "\n -z disable a priori parameter file check ---"
417	printf "\n -Z skip combine_plot_fields at the end of "
418	printf "\n the simulation ---"
419	printf "\n "
420	printf "\n Possible values of positional parameter <modus>:"
421	printf "\n \"?\" - this outline \n\n") \| more
422	exit
423	elif [[ "$1" != "" ]]
424	then
425	printf "\n +++ positional parameter $1 unknown \n"
426	locat=parameter; exit
427	fi
428
429
430
431	# KURZE STARTMELDUNG
432	printf "\n*** $version "
433	printf "\n will be executed. Please wait ..."
434
435
436
437	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
438	if [[ ! -f $config_file ]]
439	then
440	printf "\n\n +++ configuration file: "
441	printf "\n $config_file"
442	printf "\n does not exist"
443	locat=connect; exit
444	fi
445
446
447	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
448	line=""
449	grep "%host_identifier" $config_file > tmp_mrun
450	while read line
451	do
452	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
453	then
454	HOSTNAME=`echo $line \| cut -d" " -s -f2`
455	host_identifier=`echo $line \| cut -d" " -s -f3`
456	if [[ $localhost_realname = $HOSTNAME ]]
457	then
458	localhost=$host_identifier
459	break
460	fi
461	fi
462	done < tmp_mrun
463
464	if [[ "$localhost" = "" ]]
465	then
466	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
467	printf "\n for local host \"$localhost_realname\"."
468	printf "\n Please add line"
469	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
470	printf "\n to the configuration file."
471	locat=localhost; exit
472	fi
473
474
475	# HOSTSPEZIFISCHE VARIABLEN SETZEN
476	case $localhost_realname in
477	(r1\|r2\|h01\|b01) archive_system=tivoli;;
478	(cs*) archive_system=ut;;
479	(fimm.bccs.uib.no) fimm=true;;
480	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
481	(scirocco) scirocco=true;;
482	esac
483
484
485
486	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
487	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
488	[[ "$afname" = "" ]] && afname=$fname
489
490
491	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
492	if [[ "$run_mode" != "" ]]
493	then
494	input_list="$input_list $run_mode"
495	output_list="$output_list $run_mode"
496	fi
497
498
499	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
500	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
501	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
502	# STARTET)
503	if [[ "$fromhost" = "" ]]
504	then
505	fromhost=$localhost
506	fi
507
508
509	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
510	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
511	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
512	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
513	if [[ -n $host && "$host" != $localhost ]]
514	then
515	do_batch=true
516	do_remote=true
517	case $host in
518	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
519	(*) printf "\n"
520	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
521	printf "\n is not available"
522	locat=nqs; (( iec = 0 )); exit;;
523	esac
524	else
525	host=$localhost
526	fi
527
528
529	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
530	if [[ -n $additional_conditions ]]
531	then
532	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
533	cond1=`echo $additional_conditions \| cut -d" " -f1`
534	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
535	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
536	if [[ -n $dummy ]]
537	then
538	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
539	locat=options; exit
540	fi
541	block=_$cond1
542	[[ -n $cond2 ]] && block=${block}_$cond2
543	fi
544
545
546	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
547	if [[ $run_coupled_model = true ]]
548	then
549
550	if [[ -n $coupled_dist ]]
551	then
552
553	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
554	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
555
556	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
557	then
558
559	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
560	printf "\n PEs (total) : $numprocs"
561	printf "\n PEs (atmosphere): $numprocs_atmos"
562	printf "\n PEs (ocean) : $numprocs_ocean"
563	locat=coupling; exit
564
565	fi
566
567	else
568
569	(( numprocs_ocean = $numprocs / 2 ))
570	(( numprocs_atmos = $numprocs / 2 ))
571
572	fi
573	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
574
575	# GET coupled_mode FROM THE CONFIG FILE
576	line=""
577	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
578	while read line
579	do
580	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
581	then
582	coupled_mode="mpi2"
583	fi
584	done < tmp_mrun
585
586	fi
587
588
589	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
590	# ARCHIVIERUNG FEHLGESCHLAGEN IST
591	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
592	then
593	if [[ $ignore_archive_error = false ]]
594	then
595	printf "\n +++ data archiving of previous run failed"
596	printf "\n see directory \~/job_queue on remote machine"
597	locat=archive; exit
598	else
599	printf "\n +++ warning: data archiving in a previous run failed"
600	printf "\n MRUN continues, trying to get backup copy"
601	fi
602	fi
603
604
605	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
606	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
607	mrun_memory=$memory
608	mrun_group_number=$group_number
609	mrun_cpumax=$cpumax
610	mrun_numprocs=$numprocs
611
612
613	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
614	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
615	if [[ "$read_from_config" = false ]]
616	then
617
618	[[ $silent = false ]] && printf "\n Reading the configuration file... "
619	while read zeile
620	do
621	[[ $silent = false ]] && printf "."
622
623
624	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
625	# ERSETZEN
626	eval zeile=\"$zeile\"
627
628
629	# INTERPRETATION DER ZEILE
630	if [[ "$(echo $zeile)" = "" ]]
631	then
632	# LEERZEILE, KEINE AKTION
633	continue
634
635	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
636	then
637
638	# ZEILE IST KOMMENTARZEILE
639	true
640
641	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
642	then
643
644	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
645	zeile=$(echo $zeile \| cut -c2-)
646	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
647	var=`echo $zeile \| cut -d" " -f1`
648	value=`echo $zeile \| cut -d" " -s -f2`
649	for_host=`echo $zeile \| cut -d" " -s -f3`
650	for_cond1=`echo $zeile \| cut -d" " -s -f4`
651	for_cond2=`echo $zeile \| cut -d" " -s -f5`
652
653	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
654	then
655
656	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
657	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
658	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
659
660
661	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
662	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
663	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
664	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
665	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
666	# KONFIGURATIONSDATEI
667	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
668	then
669	eval $var=\$value
670
671	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
672	if [[ $do_trace = true ]]
673	then
674	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
675	fi
676	fi
677
678	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
679	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
680	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
681	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
682	if [[ $var = host ]]
683	then
684	if [[ -n $host && "$host" != $localhost ]]
685	then
686	do_batch=true
687	do_remote=true
688	case $host in
689	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
690	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
691	printf "\n is not available"
692	locat=nqs; exit;;
693	esac
694	else
695	host=$localhost
696	fi
697	fi
698
699	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
700	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
701	# DEN PROGRAMMEN BENOETIGT WERDEN
702	export $var
703	fi
704
705
706
707
708	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
709	then
710
711	# ZEILE DEFINIERT ERROR-KOMMANDO
712	(( iec = iec + 1 ))
713	zeile=$(echo $zeile \| cut -c4-)
714	err_command[$iec]="$zeile"
715
716	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
717	then
718
719	# ZEILE DEFINIERT INPUT-KOMMANDO
720	(( iic = iic + 1 ))
721	zeile=$(echo $zeile \| cut -c4-)
722	in_command[$iic]="$zeile"
723
724	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
725	then
726
727	# ZEILE DEFINIERT OUTPUT-KOMMANDO
728	(( ioc = ioc + 1 ))
729	zeile=$(echo $zeile \| cut -c4-)
730	out_command[$ioc]="$zeile"
731
732	else
733
734	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
735	# s2a: in/out - Feld
736	# s2b: loc - Feld (optional)
737	# s2c: tr/ar - Feld (optional)
738	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
739	s1=`echo $zeile \| cut -d" " -f1`
740	s2=`echo $zeile \| cut -d" " -s -f2`
741	s2a=$(echo $s2 \| cut -d":" -f1)
742	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
743	then
744	s2b=""
745	s2c=""
746	else
747	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
748	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
749	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
750	fi
751	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
752	s3=`echo $zeile \| cut -d" " -f3`
753	s4=`echo $zeile \| cut -d" " -s -f4`
754	s5=`echo $zeile \| cut -d" " -s -f5`
755	s6=`echo $zeile \| cut -d" " -s -f6`
756
757
758	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
759	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
760	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
761	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
762	# HANDEN SEIN MUSS (D.H. s2b = loc)
763	IFSALT="$IFS"; IFS="$IFS:"
764	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
765	then
766	found=false
767	for actual in $input_list
768	do
769	for formal in $s3
770	do
771	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
772	done
773	done
774	if [[ $found = true ]]
775	then
776	(( iin = iin + 1 ))
777	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
778	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
779	extin[$iin]=$s6
780	fi
781	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
782	then
783	found=false
784	for actual in $output_list
785	do
786	for formal in $s3
787	do
788	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
789	done
790	done
791	if [[ $found = true ]]
792	then
793	(( iout = iout + 1 ))
794	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
795	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
796	fi
797	elif [[ "$s2a" != in && "$s2a" != out ]]
798	then
799	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
800	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
801	locat=connect; exit
802	fi
803	IFS="$IFSALT"
804	fi
805	done < $config_file
806
807	else
808
809
810	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
811	[[ $silent = false ]] && printf "..."
812	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
813	export interpreted_config_file=.icf.$RANDOM
814
815
816
817	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
818	# VERFUEGUNG STELLEN
819	cat > .mrun_environment << %%END%%
820	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
821	config_file = '$config_file', do_remote = '$do_remote',
822	do_trace = '$do_trace', host = '$host',
823	input_list = '$input_list', icf = '$interpreted_config_file',
824	localhost = '$localhost', output_list = '$output_list' /
825
826	%%END%%
827
828	if [[ $localhost_realname = "sx-fep" ]]
829	then
830	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
831	else
832
833	if [[ "$host" != $localhost ]]
834	then
835
836	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
837	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
838	if [[ $? != 0 ]]
839	then
840	printf "\n\n +++ no interpret_config found"
841	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
842	locat=interpret_config; exit
843	fi
844	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
845	$interpret_config_executable
846
847	else
848
849	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
850	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
851	then
852	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
853	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
854	locat=interpret_config; exit
855	else
856	interpret_config${block}.x
857	fi
858
859	fi
860	fi
861	rm .mrun_environment
862
863
864	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
865	chmod u+x $interpreted_config_file
866	export PATH=$PATH:.
867	. $interpreted_config_file
868	rm $interpreted_config_file
869
870	fi
871
872
873	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
874	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
875	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
876	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
877	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
878	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
879	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
880
881
882	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
883	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
884	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
885	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
886	if [[ "$SOURCES_COMPLETE" = "" ]]
887	then
888
889	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
890	# VEREINBART WURDE
891	source_path=""
892	line=""
893	grep "%source_path" $config_file > tmp_mrun
894	while read line
895	do
896	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
897	then
898	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
899	then
900	global_source_path=`echo $line \| cut -d" " -f2`
901	fi
902	fi
903	done < tmp_mrun
904
905	line=""
906	found=false
907	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
908	while read line
909	do
910	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
911	then
912	if [[ $found = true ]]
913	then
914	printf "\n\n +++ more than one source path found in configuration file"
915	printf "\n for local host \"$localhost\" "
916	locat=source_path; exit
917	fi
918	source_path=`echo $line \| cut -d" " -f2`
919	found=true
920	fi
921	done < tmp_mrun
922	rm tmp_mrun
923
924	if [[ "$source_path" = "" ]]
925	then
926	if [[ "$global_source_path" != "" ]]
927	then
928	source_path=$global_source_path
929	else
930	printf "\n\n +++ no source path found in configuration file"
931	printf "\n for local host \"$localhost\" "
932	locat=source_path; exit
933	fi
934	fi
935	eval source_path=$source_path
936
937	if [[ ! -d $source_path ]]
938	then
939	printf "\n\n +++ source path \"$source_path\" on local host"
940	printf "\n \"$localhost\" does not exist"
941	locat=source_path; exit
942	fi
943
944	fi
945
946
947	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
948	# DURCH OPTION -G MITGETEILT)
949	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
950	then
951	global_revision=`svnversion $source_path 2>/dev/null`
952	global_revision="Rev: $global_revision"
953	fi
954
955
956	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
957	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
958	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
959	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
960	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
961	if [[ -n $host && "$host" != $localhost ]]
962	then
963	do_batch=true
964	do_remote=true
965	case $host in
966	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
967	(*) printf "\n"
968	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
969	printf "\n is not available"
970	locat=nqs; (( iec = 0 )); exit;;
971	esac
972	else
973	host=$localhost
974	fi
975
976
977	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
978	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
979	then
980
981	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
982	if [[ ! -n $numprocs ]]
983	then
984	printf "\n"
985	printf "\n +++ option \"-K parallel\" requires additional specification"
986	printf "\n of the number of processors to be used by"
987	printf "\n mrun-option \"-X\" or by environment-variable"
988	printf "\n \"numprocs\" in the configuration file"
989	locat=numprocs; (( iec = 0 )); exit
990	fi
991
992	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
993	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
994	# GESAMTPROZESSORANZAHL IST
995	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
996	then
997	printf "\n"
998	printf "\n +++ option \"-T\" (tasks per node) is missing"
999	printf "\n set -T option or define tasks_per_node in the config file"
1000	locat=tasks_per_node; (( iec = 0 )); exit
1001	fi
1002	if [[ $host != lcflow && $host != lcxt5m ]]
1003	then
1004	(( ival = $tasks_per_node ))
1005	(( pes = numprocs ))
1006	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1007	# then
1008	# (( pes = pes - 1 ))
1009	# fi
1010	(( ii = pes / ival ))
1011	if (( pes - ii * ival > 0 ))
1012	then
1013	printf "\n"
1014	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1015	printf "\n divisor of the total number of processors (option \"-X\")"
1016	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1017	locat=tasks_per_node; (( iec = 0 )); exit
1018	fi
1019	fi
1020
1021
1022	# IBMY HAT NUR EINEN KNOTEN
1023	if [[ $host = ibmy ]]
1024	then
1025	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1026	then
1027	printf "\n"
1028	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1029	printf "\n total number of processors (option \"-X\")"
1030	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1031	locat=tasks_per_node; (( iec = 0 )); exit
1032	fi
1033	fi
1034
1035
1036	# SETTINGS FOR SUBJOB-COMMAND
1037	TOPT="-T $tasks_per_node"
1038	OOPT="-O $threads_per_task"
1039
1040	# GESAMTZAHL DER KNOTEN BESTIMMEN
1041	if [[ "$tasks_per_node" != "" ]]
1042	then
1043	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1044	fi
1045
1046	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1047	# SETZEN
1048	if [[ $node_usage = default ]]
1049	then
1050	if [[ $host = ibms ]]
1051	then
1052	node_usage=shared
1053	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1054	then
1055	node_usage=singlejob
1056	else
1057	node_usage=not_shared
1058	fi
1059	fi
1060
1061	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1062	then
1063	printf "\n"
1064	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1065	printf "\n \"shared\" or \"not_shared\""
1066	locat=tasks_per_node; (( iec = 0 )); exit
1067	fi
1068
1069	fi
1070
1071	# PRUEFEN, OB HOSTFILE EXISTIERT
1072	if [[ -n $hostfile ]]
1073	then
1074	if [[ ! -f $hostfile ]]
1075	then
1076	printf "\n"
1077	printf "\n +++ hostfile \"$hostfile\" does not exist"
1078	locat=hostfile; exit
1079	fi
1080	fi
1081
1082	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1083	if [[ $host = ibmy && $do_remote = false ]]
1084	then
1085	if [[ ! -f $HOME/.rhosts ]]
1086	then
1087	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1088	printf "\n\n *** file:"
1089	printf "\n $HOME/.rhosts"
1090	printf "\n was created\n"
1091	fi
1092	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1093	then
1094	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1095	printf "\n\n *** file:"
1096	printf "\n $HOME/.rhosts"
1097	printf "\n was extended by the name of the current host\n"
1098	fi
1099	fi
1100
1101
1102	# Set default value for the maximum number of parallel io streams
1103	if [[ "$maximum_parallel_io_streams" = "" ]]
1104	then
1105	maximum_parallel_io_streams=$numprocs
1106	fi
1107
1108
1109	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1110	if [[ "$scp_port" != "" ]]
1111	then
1112	PORTOPT="-P $scp_port"
1113	SSH_PORTOPT="-p $scp_port"
1114	fi
1115
1116
1117	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1118	if [[ $queue = none ]]
1119	then
1120	case $host in
1121	(ibmh) queue=no_class;;
1122	(ibmkisti) queue=class.32plus;;
1123	(ibmy) queue=parallel;;
1124	(lckiaps) queue=normal;;
1125	(lckyoto) queue=ph;;
1126	(lckyuh) queue=fx-single;;
1127	(lckyut) queue=cx-single;;
1128	(lcsgib) queue=testq;;
1129	(lcsgih) queue=testq;;
1130	(lctit) queue=S;;
1131	(nech) queue=none;;
1132	(necriam) queue=SP;;
1133	(unics) queue=unics;;
1134	esac
1135	fi
1136
1137
1138	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1139	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1140	# ERMITTELN
1141	(( i = 0 ))
1142	while (( i < iin ))
1143	do
1144	(( i = i + 1 ))
1145	(( maxcycle = 0 ))
1146
1147	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1148	if [[ "${actionin[$i]}" = di ]]
1149	then
1150	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1151	# REM-MASCHINE AUSWERTEN
1152	eval filename=${pathin[$i]}/${endin[$i]}
1153	else
1154	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1155	# REM-MASCHINE AUSWERTEN
1156	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1157	fi
1158	eval pathname=${pathin[$i]}
1159
1160	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1161	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1162	then
1163	filename_input=$filename
1164	fi
1165
1166	# PRUEFEN AUF VORHANDENSEIN
1167	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1168	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1169	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1170	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1171	then
1172	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1173	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1174	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1175	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1176	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1177	if [[ "${transin[$i]}" != "locopt" ]]
1178	then
1179	printf "\n\n +++ INPUT-file: "
1180	if [[ "${extin[$i]}" = "" ]]
1181	then
1182	printf "\n $filename"
1183	else
1184	printf "\n $filename.${extin[$i]}"
1185	fi
1186	printf "\n does not exist\n"
1187	locat=input; exit
1188	else
1189	transin[$i]="unavailable"
1190	fi
1191	else
1192
1193	# ZYKLUSNUMMER FESTSTELLEN
1194	ls -1 -d $filename > filelist 2>/dev/null
1195	ls -1 -d $filename.* >> filelist 2>/dev/null
1196	while read zeile
1197	do
1198	cycle=$(print $zeile \| cut -f2 -d".")
1199	if [[ "$cycle" = "$zeile" ]]
1200	then
1201	(( icycle = 0 ))
1202	elif [[ "$cycle" = "${extin[$i]}" ]]
1203	then
1204	(( icycle = 0 ))
1205	else
1206	(( icycle = $cycle ))
1207	fi
1208	if (( icycle > maxcycle ))
1209	then
1210	(( maxcycle = icycle ))
1211	file_to_be_used=$zeile
1212	fi
1213	done <filelist
1214	rm filelist
1215
1216	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1217	if (( maxcycle > 0 ))
1218	then
1219	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1220	then
1221	filename=${filename}.$maxcycle.${extin[$i]}
1222	else
1223	filename=${filename}.$maxcycle
1224	fi
1225	else
1226	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1227	then
1228	filename=${filename}.${extin[$i]}
1229	fi
1230	fi
1231
1232	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1233	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1234	absnamein[$i]=$filename
1235	if (( maxcycle > 0 ))
1236	then
1237	if [[ "${actionin[$i]}" = di ]]
1238	then
1239	frelin[$i]=${endin[$i]}.$maxcycle
1240	else
1241	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1242	fi
1243	else
1244	if [[ "${actionin[$i]}" = di ]]
1245	then
1246	frelin[$i]=${endin[$i]}
1247	else
1248	frelin[$i]=${afname}${endin[$i]}
1249	fi
1250	fi
1251
1252	fi
1253	done
1254
1255	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1256	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1257	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1258	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1259	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1260	(( i = 0 ))
1261	while (( i < iout ))
1262	do
1263	(( i = i + 1 ))
1264	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1265	then
1266	if [[ "${actionout[$i]}" = tr ]]
1267	then
1268	actionout[$i]=""
1269	elif [[ "${actionout[$i]}" = trpe ]]
1270	then
1271	actionout[$i]=pe
1272	elif [[ "${actionout[$i]}" = tra ]]
1273	then
1274	actionout[$i]=a
1275	fi
1276	(( maxcycle = 0 ))
1277	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1278	eval catalogname=${pathout[$i]}
1279	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1280	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1281	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1282	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1283	then
1284
1285	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1286	if cat /dev/null > $filename
1287	then
1288	rm $filename
1289	else
1290
1291	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1292	if [[ ! -d $catalogname ]]
1293	then
1294	if mkdir -p $catalogname
1295	then
1296	printf "\n\n *** directory:"
1297	printf "\n $catalogname"
1298	printf "\n was created\n"
1299	else
1300	printf "\n\n +++ OUTPUT-file:"
1301	printf "\n $filename"
1302	printf "\n cannot be created, because directory does not exist"
1303	printf "\n and cannot be created either"
1304	printf "\n"
1305	locat=output ; exit
1306	fi 2>/dev/null
1307	else
1308	printf "\n\n +++ OUTPUT-file:"
1309	printf "\n $filename"
1310	printf "\n cannot be created, although directory exists"
1311	printf "\n"
1312	locat=output ; exit
1313	fi
1314	fi 2>/dev/null
1315	else
1316
1317	# ZYKLUSNUMMER FESTSTELLEN
1318	ls -1 -d $filename > filelist 2>/dev/null
1319	ls -1 -d $filename.* >> filelist 2>/dev/null
1320	while read zeile
1321	do
1322	cycle=$(print $zeile \| cut -f2 -d".")
1323	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1324	then
1325	(( icycle = 1 ))
1326	else
1327	(( icycle = $cycle + 1 ))
1328	fi
1329	if (( icycle > maxcycle ))
1330	then
1331	(( maxcycle = icycle ))
1332	fi
1333	done <filelist
1334	rm filelist
1335	fi
1336
1337	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1338	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1339	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1340	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1341	if [[ "${actionout[$i]}" != a ]]
1342	then
1343	if (( maxcycle > 0 ))
1344	then
1345	filename=${filename}.$maxcycle
1346	if cat /dev/null > $filename
1347	then
1348	rm $filename
1349	else
1350	printf "\n +++ OUTPUT-file:"
1351	printf "\n $filename"
1352	printf "\n cannot be created"
1353	locat=output ; exit
1354	fi
1355	fi
1356	else
1357	(( maxcycle = maxcycle - 1 ))
1358	if (( maxcycle > 0 ))
1359	then
1360	filename=${filename}.$maxcycle
1361	fi
1362	fi
1363
1364	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1365	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1366	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1367	pathout[$i]=$filename
1368	if (( maxcycle > 0 ))
1369	then
1370	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1371	else
1372	frelout[$i]=${fname}${endout[$i]}
1373	fi
1374
1375	fi
1376	done
1377
1378
1379	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1380	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1381	then
1382	if [[ "$dvr_inc" = "" ]]
1383	then
1384	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1385	printf "\n This is required for the dvrp_graphics package.\n"
1386	locat=dvr; exit
1387	fi
1388	if [[ "$dvr_lib" = "" ]]
1389	then
1390	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1391	printf "\n This is required for the dvrp_graphics package.\n"
1392	locat=dvr; exit
1393	fi
1394	fi
1395
1396
1397	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1398	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1399	# UEBERSETZT ZU WERDEN)
1400	if [[ "$mainprog" = "" && "$executable" = "" ]]
1401	then
1402	printf "\n +++ neither main program nor executable defined"
1403	locat=source; exit
1404	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1405	then
1406	printf "\n +++ main program as well as executable defined"
1407	locat=source; exit
1408	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1409	then
1410	do_compile=false
1411	fi
1412
1413
1414	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1415	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1416	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1417	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1418	then
1419	rm -rf SOURCES_FOR_RUN_$fname
1420	mkdir SOURCES_FOR_RUN_$fname
1421	fi
1422
1423
1424	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1425	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1426	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1427	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1428	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1429	then
1430
1431	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1432
1433	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1434	then
1435
1436	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1437	source_list=""
1438	cd $source_path
1439
1440
1441	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1442	if [[ ! -d .svn ]]
1443	then
1444	printf "\n\n +++ source directory"
1445	printf "\n \"$source_path\" "
1446	printf "\n is not under control of \"subversion\"."
1447	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1448	fi
1449
1450
1451	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1452	Filenames=""
1453	svn status > tmp_mrun
1454	while read line
1455	do
1456	firstc=`echo $line \| cut -c1`
1457	if [[ $firstc = M \|\| $firstc = "?" ]]
1458	then
1459	Name=`echo "$line" \| cut -c8-`
1460	extension=`echo $Name \| cut -d. -f2`
1461	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1462	then
1463	Filenames="$Filenames "$Name
1464	fi
1465	fi
1466	done < tmp_mrun
1467
1468
1469	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1470	for dateiname in $Filenames
1471	do
1472	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1473	source_list=$source_list"$dateiname "
1474	done
1475
1476	cd - > /dev/null
1477
1478
1479	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1480	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1481	# VORHANDEN
1482	elif [[ "$source_list" != "" && $restart_run != true ]]
1483	then
1484
1485	cd $source_path
1486
1487	for filename in $source_list
1488	do
1489
1490	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1491	if [[ $(print $filename \| grep -c "/") != 0 ]]
1492	then
1493	printf "\n +++ source code file: $filename"
1494	printf "\n must not contain (\"/\") "
1495	locat=source; exit
1496	fi
1497
1498	if [[ ! -f $filename ]]
1499	then
1500	printf "\n +++ source code file: $filename"
1501	printf "\n does not exist"
1502	locat=source; exit
1503	else
1504	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1505	fi
1506
1507	done
1508
1509	cd - > /dev/null
1510
1511	fi
1512
1513
1514	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1515	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1516	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1517	if [[ $restart_run != true ]]
1518	then
1519
1520	if [[ ! -f "$source_path/$mainprog" ]]
1521	then
1522	printf "\n\n +++ main program: $mainprog"
1523	printf "\n does not exist in source directory"
1524	printf "\n \"$source_path\"\n"
1525	locat=source; exit
1526	else
1527	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1528	then
1529	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1530	source_list=${mainprog}" $source_list"
1531	fi
1532	fi
1533	fi
1534
1535
1536	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1537	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1538	if [[ "$restart_run" != true ]]
1539	then
1540	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1541	if [[ ! -f $makefile ]]
1542	then
1543	printf "\n +++ file \"$makefile\" does not exist"
1544	locat=make; exit
1545	else
1546	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1547	fi
1548	fi
1549
1550
1551	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1552	if [[ $restart_run != true && "$add_source_path" != "" ]]
1553	then
1554
1555	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1556	if [[ ! -d $add_source_path ]]
1557	then
1558	printf "\n\n +++ WARNING: additional source code directory"
1559	printf "\n \"$add_source_path\" "
1560	printf "\n does not exist or is not a directory."
1561	printf "\n No source code will be used from this directory!\n"
1562	add_source_path=""
1563	if [[ $silent == false ]]
1564	then
1565	sleep 3
1566	fi
1567	else
1568
1569	cd $add_source_path
1570	found=false
1571
1572	Names=$(ls -1 *.f90 2>&1)
1573	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1574	Names=$(ls -1 *.F90 2>&1)
1575	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1576	Names=$(ls -1 *.F 2>&1)
1577	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1578	Names=$(ls -1 *.f 2>&1)
1579	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1580	Names=$(ls -1 *.c 2>&1)
1581	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1582
1583	cd - > /dev/null
1584	cd SOURCES_FOR_RUN_$fname
1585
1586	# COPY MAKEFILE IF EXISTING
1587	if [[ -f $add_source_path/Makefile ]]
1588	then
1589	printf "\n\n *** user Makefile from directory"
1590	printf "\n \"$add_source_path\" is used \n"
1591	if [[ $silent == false ]]
1592	then
1593	sleep 1
1594	fi
1595	cp $add_source_path/Makefile .
1596	fi
1597
1598	for dateiname in $AddFilenames
1599	do
1600	if [[ -f $dateiname ]]
1601	then
1602	printf "\n +++ source code file \"$dateiname\" found in additional"
1603	printf "\n source code directory \"$add_source_path\" "
1604	printf "\n but was also given with option \"-s\" which means that it should be taken"
1605	printf "\n from directory \"$source_path\"."
1606	locat=source; exit
1607	fi
1608
1609	cp $add_source_path/$dateiname .
1610	source_list="$source_list $dateiname"
1611
1612	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1613	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1614	then
1615	printf "\n\n +++ user file \"$dateiname\" "
1616	printf "\n is not listed in Makefile \n"
1617	locat=source; exit
1618	else
1619
1620	# Default User-Interface von der Liste entfernen, falls Datei
1621	# ein User-Interface enthaelt
1622	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1623	# then
1624	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1625	# then
1626	# rm -rf user_interface.f90
1627	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1628	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1629	# printf "\n since a user-interface is found in file"
1630	# printf "\n \"$add_source_path/$dateiname\" \n"
1631	# sleep 3
1632	# else
1633	if [[ $found = false ]]
1634	then
1635	found=true
1636	printf "\n\n *** following user file(s) added to the"
1637	printf " files to be translated:\n "
1638	fi
1639	printf "$dateiname "
1640	if [[ $silent == false ]]
1641	then
1642	sleep 0.5
1643	fi
1644
1645	fi
1646	done
1647	[[ $found = true ]] && printf "\n"
1648	cd - > /dev/null
1649	fi
1650	fi
1651
1652
1653	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1654	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1655	if [[ $restart_run != true && -n $package_list ]]
1656	then
1657
1658	cd $source_path
1659
1660	for package in $package_list
1661	do
1662
1663	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1664
1665	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1666	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1667	# LIEFERT
1668	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1669
1670
1671	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1672	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1673	for source_list_name in $package_source_list
1674	do
1675	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1676	then
1677
1678	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1679	ending=`echo $source_list_name \| cut -f2 -d.`
1680	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1681	then
1682	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1683	source_list="$source_list $source_list_name"
1684	fi
1685	fi
1686	done
1687	done
1688
1689	cd - > /dev/null
1690	fi
1691
1692
1693	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1694	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1695	# if [[ "$restart_run" != true ]]
1696	# then
1697	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1698	# if [[ ! -f $makefile ]]
1699	# then
1700	# printf "\n +++ file \"$makefile\" does not exist"
1701	# locat=make; exit
1702	# else
1703	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1704	# fi
1705	# fi
1706
1707	fi # do_compile=true
1708
1709
1710	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1711	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1712	if [[ $do_compile = true ]]
1713	then
1714
1715	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1716	# ZUSAMMENSETZEN
1717	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1718	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1719	then
1720	cpp_options="${cpp_options},-D__ibm=__ibm"
1721	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1722	then
1723	cpp_options="$cpp_options -D__nec"
1724	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1725	then
1726	cpp_options="$cpp_options -D__lc"
1727	else
1728	cpp_options="$cpp_options -D__$localhost"
1729	fi
1730
1731	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1732	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1733	then
1734	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1735	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1736	else
1737	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1738	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1739	fi
1740
1741	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1742	if [[ -n $package_list ]]
1743	then
1744	for package in $package_list
1745	do
1746	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1747	then
1748	if [[ $package != "dvrp_graphics+1PE" ]]
1749	then
1750	cpp_options="${cpp_options},-D__$package=__$package"
1751	else
1752	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1753	export use_seperate_pe_for_dvrp_output=true
1754	fi
1755	else
1756	if [[ $package != "dvrp_graphics+1PE" ]]
1757	then
1758	cpp_options="$cpp_options -D__$package"
1759	else
1760	cpp_options="$cpp_options -D__dvrp_graphics"
1761	export use_seperate_pe_for_dvrp_output=true
1762	fi
1763	fi
1764	done
1765	fi
1766
1767	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1768	if [[ -n $cpp_opts ]]
1769	then
1770	for popts in $cpp_opts
1771	do
1772	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1773	then
1774	cpp_options="${cpp_options},-D__$popts=__$popts"
1775	else
1776	cpp_options="$cpp_options -D__$popts"
1777	fi
1778	done
1779	fi
1780
1781	else
1782
1783
1784	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1785	if [[ $do_remote = false ]]
1786	then
1787	if [[ ! -f $executable ]]
1788	then
1789	printf "\n +++ executable file: $executable"
1790	printf "\n does not exist"
1791	locat=executable; exit
1792	fi
1793	fi
1794	fi
1795
1796
1797	# JOBMODUS FESTSTELLEN
1798	if [[ "$ENVIRONMENT" = BATCH ]]
1799	then
1800	jobmo=BATCH
1801	else
1802	jobmo=INTERACTIVE
1803	fi
1804
1805
1806	# no interactive runs on lctit
1807	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1808	then
1809	printf "\n +++ no interactive runs allowed on host \"$host\" "
1810	printf "\n please submit batch job using mrun option \"-b\" \n"
1811	locat=normal; exit
1812	fi
1813
1814
1815	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1816	# DURCH BENUTZER ANDERWEITIG VEREINBART
1817	if [[ "$compiler_name" = "" ]]
1818	then
1819
1820	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1821	locat=compiler_name; exit
1822
1823	fi
1824
1825
1826	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1827	[[ $localhost = necriam ]] && compiler_name=mpif90
1828
1829
1830
1831	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1832	kennung=$RANDOM
1833	if [[ "$tmp_user_catalog" = "" ]]
1834	then
1835	if [[ $localhost = ibmh ]]
1836	then
1837	tmp_user_catalog=$SCRATCH
1838	elif [[ $localhost = nech ]]
1839	then
1840	tmp_user_catalog=$WRKSHR
1841	else
1842	tmp_user_catalog=/tmp
1843	fi
1844	fi
1845	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1846
1847
1848	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1849	# BESTIMMEN
1850	if [[ "$tmp_data_catalog" = "" ]]
1851	then
1852	if [[ $localhost = nech ]]
1853	then
1854	tmp_data_catalog=$WRKSHR/mrun_restart_data
1855	else
1856	tmp_data_catalog=/tmp/mrun_restart_data
1857	fi
1858	fi
1859
1860
1861	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1862	# ERSETZEN
1863	if [[ $do_remote = false && $do_compile = true ]]
1864	then
1865	eval fopts=\"$fopts\"
1866	eval lopts=\"$lopts\"
1867	fi
1868
1869
1870
1871	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1872	fopts="$fopts $netcdf_inc $dvr_inc"
1873	lopts="$lopts $netcdf_lib $dvr_lib"
1874	ROPTS="$ropts"
1875	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1876	# then
1877	XOPT="-X $numprocs"
1878	# fi
1879
1880
1881
1882	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1883	# GRAMM BENOETIGT
1884	done=false
1885	while [[ $done = false ]]
1886	do
1887	cputime=$cpumax
1888	if (( $cputime == 0 ))
1889	then
1890	if [[ $do_batch = true ]]
1891	then
1892	printf "\n +++ cpu-time is undefined"
1893	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1894	printf "\n >>> "
1895	read cputime 1>/dev/null 2>&1
1896	else
1897	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1898	fi
1899	else
1900	done=true
1901	fi
1902	cpumax=$cputime
1903	done
1904
1905	(( minuten = cputime / 60 ))
1906	(( sekunden = cputime - minuten * 60 ))
1907
1908
1909	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1910	if [[ $do_batch = true ]]
1911	then
1912	done=false
1913	while [[ $done = false ]]
1914	do
1915	if (( memory == 0 ))
1916	then
1917	printf "\n +++ memory demand is undefined"
1918	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1919	printf "\n >>> "
1920	read memory 1>/dev/null 2>&1
1921	else
1922	done=true
1923	fi
1924	done
1925	fi
1926
1927
1928	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1929	if [[ $do_remote = true && -z $remote_username ]]
1930	then
1931	while [[ -z $remote_username ]]
1932	do
1933	printf "\n +++ username on remote host \"$host\" is undefined"
1934	printf "\n >>> Please type username:"
1935	printf "\n >>> "
1936	read remote_username
1937	done
1938	mc="$mc -u$remote_username"
1939	fi
1940
1941	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1942	if [[ "$login_init_cmd" != "" ]]
1943	then
1944	export init_cmds="${login_init_cmd};"
1945	fi
1946
1947
1948	# set module load command and export for subjob
1949	if [[ "$modules" != "" ]]
1950	then
1951	if [[ $host = lctit ]]
1952	then
1953	export module_calls=". $modules"
1954	else
1955	export module_calls="module load ${modules};"
1956	fi
1957	fi
1958
1959	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1960	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1961	then
1962	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1963	then
1964	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1965	fi
1966	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1967	# then
1968	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1969	# echo "*** module_calls = $module_calls"
1970	# fi
1971	fi
1972
1973
1974	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1975	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1976	then
1977	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1978	then
1979	mpilib=mpt
1980	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1981	then
1982	mpilib=mvapich
1983	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1984	then
1985	mpilib=impi
1986	fi
1987	fi
1988
1989
1990
1991	###########################################################################
1992	# HEADER-AUSGABE
1993	###########################################################################
1994
1995
1996	calltime=$(date)
1997	printf "\n"
1998	# [[ $silent = false ]] && clear
1999	printf "#--------------------------------------------------------------# \n"
2000	printf "\| $version$calltime \| \n"
2001	printf "\| \| \n"
2002	spalte1="called on:"; spalte2=$localhost_realname
2003	printf "\| $spalte1$spalte2 \| \n"
2004	if [[ $local_compile = false ]]
2005	then
2006	if [[ $do_remote = true ]]
2007	then
2008	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2009	else
2010	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2011	fi
2012	else
2013	spalte1="compiling test only!"; spalte2=""
2014	fi
2015	printf "\| $spalte1$spalte2 \| \n"
2016	if [[ -n $numprocs ]]
2017	then
2018	spalte1="number of PEs:"; spalte2=$numprocs
2019	printf "\| $spalte1$spalte2 \| \n"
2020	fi
2021	if [[ -n $tasks_per_node ]]
2022	then
2023	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2024	printf "\| $spalte1$spalte2 \| \n"
2025	fi
2026	if [[ $maximum_parallel_io_streams != $numprocs ]]
2027	then
2028	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2029	printf "\| $spalte1$spalte2 \| \n"
2030	fi
2031	if [[ $use_openmp = true ]]
2032	then
2033	spalte1="threads per task:"; spalte2="$threads_per_task"
2034	printf "\| $spalte1$spalte2 \| \n"
2035	fi
2036	printf "\| \| \n"
2037	if [[ $do_compile = true ]]
2038	then
2039	if [[ "$mopts" != "" ]]
2040	then
2041	spalte1="make options:"; spalte2=$mopts
2042	printf "\| $spalte1$spalte2 \| \n"
2043	zeile=$(echo "$mopts" \| cut -c41-)
2044	while [[ "$zeile" != "" ]]
2045	do
2046	spalte1=""
2047	spalte2=$zeile
2048	printf "\| $spalte1$spalte2 \| \n"
2049	zeile=$(echo "$zeile" \| cut -c41-)
2050	done
2051	fi
2052
2053	spalte1="cpp directives:"; spalte2=$cpp_options
2054	printf "\| $spalte1$spalte2 \| \n"
2055	zeile=$(echo "$cpp_options" \| cut -c41-)
2056	while [[ "$zeile" != "" ]]
2057	do
2058	spalte1=""
2059	spalte2=$zeile
2060	printf "\| $spalte1$spalte2 \| \n"
2061	zeile=$(echo "$zeile" \| cut -c41-)
2062	done
2063
2064	spalte1="compiler options:"; spalte2="$fopts"
2065	printf "\| $spalte1$spalte2 \| \n"
2066	zeile=$(echo "$fopts" \| cut -c41-)
2067	while [[ "$zeile" != "" ]]
2068	do
2069	spalte1=""
2070	spalte2=$zeile
2071	printf "\| $spalte1$spalte2 \| \n"
2072	zeile=$(echo "$zeile" \| cut -c41-)
2073	done
2074
2075	spalte1="linker options:"; spalte2=$lopts
2076	printf "\| $spalte1$spalte2 \| \n"
2077	zeile=$(echo "$lopts" \| cut -c41-)
2078	while [[ "$zeile" != "" ]]
2079	do
2080	spalte1=""
2081	spalte2=$zeile
2082	printf "\| $spalte1$spalte2 \| \n"
2083	zeile=$(echo "$zeile" \| cut -c41-)
2084	done
2085
2086	spalte1="modules to be load:"; spalte2=$modules
2087	printf "\| $spalte1$spalte2 \| \n"
2088	zeile=$(echo "$modules" \| cut -c41-)
2089	while [[ "$zeile" != "" ]]
2090	do
2091	spalte1=""
2092	spalte2=$zeile
2093	printf "\| $spalte1$spalte2 \| \n"
2094	zeile=$(echo "$zeile" \| cut -c41-)
2095	done
2096
2097	spalte1="main program":; spalte2=$mainprog
2098	printf "\| $spalte1$spalte2 \| \n"
2099	else
2100	spalte1=executable:; spalte2=$executable
2101	printf "\| $spalte1$spalte2 \| \n"
2102	fi
2103	printf "\| \| \n"
2104	spalte1="base name of files":; spalte2=$fname
2105	printf "\| $spalte1$spalte2 \| \n"
2106	if [[ $fname != $afname ]]
2107	then
2108	spalte1="base name of input files":; spalte2=$afname
2109	printf "\| $spalte1$spalte2 \| \n"
2110	fi
2111	spalte1="INPUT control list":; spalte2=$input_list
2112	printf "\| $spalte1$spalte2 \| \n"
2113	spalte1="OUTPUT control list":; spalte2=$output_list
2114	printf "\| $spalte1$spalte2 \| \n"
2115
2116	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2117	then
2118	spalte1="memory demand / PE":; spalte2="$memory MB"
2119	printf "\| $spalte1$spalte2 \| \n"
2120	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2121	printf "\| $spalte1$spalte2 \| \n"
2122	fi
2123
2124	if [[ $do_compile = true ]]
2125	then
2126	printf "\| \| \n"
2127	printf "\| Files to be compiled: \| \n"
2128	zeile=$source_list
2129	while [[ "$zeile" != "" ]]
2130	do
2131	spalte3=$zeile
2132	printf "\| $spalte3 \| \n"
2133	zeile=$(echo "$zeile" \| cut -c61-)
2134	done
2135	fi
2136	printf "#--------------------------------------------------------------#"
2137
2138
2139
2140	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2141	if [[ $do_trace = true ]]
2142	then
2143	(( i = 0 ))
2144	while (( i < iin ))
2145	do
2146	(( i = i + 1 ))
2147	if (( i == 1 ))
2148	then
2149	printf "\n\n >>> INPUT-file assignments:\n"
2150	fi
2151	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2152	done
2153	(( i = 0 ))
2154	while (( i < iout ))
2155	do
2156	(( i = i + 1 ))
2157	if (( i == 1 ))
2158	then
2159	printf "\n\n >>> OUTPUT-file assignments:\n"
2160	fi
2161	printf "\n ${localout[$i]} : ${pathout[$i]}"
2162	done
2163	(( i = 0 ))
2164	while (( i < iic ))
2165	do
2166	(( i = i + 1 ))
2167	if (( i == 1 ))
2168	then
2169	printf "\n\n >>> INPUT-commands:\n"
2170	fi
2171	printf "\n ${in_command[$i]}"
2172	done
2173	(( i = 0 ))
2174	while (( i < ioc ))
2175	do
2176	(( i = i + 1 ))
2177	if (( i == 1 ))
2178	then
2179	printf "\n\n >>> OUTPUT-commands:\n"
2180	fi
2181	printf "\n ${out_command[$i]}"
2182	done
2183	fi
2184
2185
2186	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2187	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2188	then
2189	antwort=dummy
2190	printf "\n\n"
2191	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2192	do
2193	printf " >>> everything o.k. (y/n) ? "
2194	read antwort
2195	done
2196	if [[ $antwort = n \|\| $antwort = N ]]
2197	then
2198	locat=user_abort; (( iec = 0 )); exit
2199	fi
2200	if [[ $do_batch = true ]]
2201	then
2202	printf " >>> batch-job will be created and submitted"
2203	else
2204	if [[ $local_compile = false ]]
2205	then
2206	printf " >>> MRUN will now continue to execute on this machine"
2207	else
2208	printf " >>> a test compilation will now be carried out on this machine"
2209	fi
2210	fi
2211	fi
2212
2213	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2214
2215	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2216	check_depository="${working_directory}/trunk/UTIL"
2217	check_sources="${working_directory}/tmp_check_namelist_files"
2218	skip_check=false
2219
2220	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2221	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2222	then
2223	skip_check=true
2224	reason="run on remote host or parameter file check has not been compiled."
2225	fi
2226	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2227	then
2228	skip_check=true
2229	reason="parameter file check has not been compiled."
2230	fi
2231
2232	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2233	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2234	then
2235	skip_check=true
2236	reason="serial run."
2237	fi
2238
2239	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2240	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2241	if [[ $check_namelist_files == false ]]
2242	then
2243	skip_check=true
2244	reason="-z option set."
2245	fi
2246
2247	if [[ $fromhost != $localhost ]]
2248	then
2249	skip_check=true
2250	reason="submitting host is local host."
2251	fi
2252
2253	if [[ $run_coupled_model == true ]]
2254	then
2255	skip_check=true
2256	reason="coupled run."
2257	fi
2258
2259	if [[ $restart_run == true ]]
2260	then
2261	skip_check=true
2262	reason="restart run."
2263
2264	fi
2265
2266	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2267	((last_char = `echo $filename_input \| wc -c` - 1))
2268	last_char=`echo $filename_input \|cut -c$last_char`
2269	if [[ "$last_char" == "f" ]]
2270	then
2271	skip_check=true
2272	reason="restart run."
2273	fi
2274
2275	if [[ $skip_check == false ]]
2276	then
2277
2278	tmp_check=${working_directory}/tmp_check
2279
2280	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2281	# NOT NECESSARILY REQUIRED
2282	line=""
2283	found=false
2284	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2285	while read line1
2286	do
2287	line="$line1"
2288	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2289	then
2290	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2291	found=true
2292	fi
2293	done < $tmp_check
2294
2295	if [[ $found = false ]]
2296	then
2297	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2298	fi
2299
2300	rm -rf ${working_directory}/tmp_check
2301
2302	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2303	for item in $input_list
2304	do
2305	if [[ "$item" == "restart" ]]
2306	then
2307	check_restart=1
2308	else
2309	check_restart=0
2310	fi
2311	done
2312
2313	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2314	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2315	then
2316	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2317	locat=check_namelist; exit
2318	fi
2319
2320	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2321	if [[ $check_restart == 1 ]]
2322	then
2323
2324
2325
2326	filenamef="${filename_input}f"
2327	if [[ ! -f $filenamef ]]
2328	then
2329	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2330	check_restart=0
2331	answer=dummy
2332	printf "\n\n"
2333
2334	if [[ $silent == false ]]
2335	then
2336	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2337	do
2338	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2339	read answer
2340	done
2341	if [[ $answer = a \|\| $answer = A ]]
2342	then
2343	printf "\n +++ Aborting...."
2344	locat=normal; exit
2345	fi
2346	fi
2347	else
2348	check_restart=1
2349	fi
2350	fi
2351
2352	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2353	mkdir $check_sources
2354	cd $check_sources
2355
2356
2357	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2358	if [[ -d $add_source_path ]]
2359	then
2360	printf "\n\n *** copying files from $check_depository"
2361	cp $check_depository/check_namelist_files.tar ./
2362
2363	printf "\n\n *** untar of makefile and source files in $check_sources"
2364	tar -xf check_namelist_files.tar > /dev/null 2>&1
2365
2366	printf "\n\n *** adding user code."
2367	cp $add_source_path/* ./
2368	touch check_namelist_files.f90
2369
2370	# GET COMPILER OPTIONS AND PERFORM MAKE
2371	printf "\n\n *** compiling code if necessary...\n"
2372
2373	# workaround for batch jobs on local machine (lcxe6)
2374	if [[ $do_batch == true && $do_remote == false ]]
2375	then
2376	eval $init_cmds
2377	fi
2378
2379	# GET CHECK OPTIONS
2380	line=""
2381	found=false
2382
2383	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2384
2385	while read line1
2386	do
2387
2388	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2389	then
2390	line="$line1"
2391	fi
2392
2393	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2394	then
2395	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2396	line="$line "
2397	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2398	found=true
2399	fi
2400
2401	done < $tmp_check
2402	copts_check="$copts_check -D__check -D__parallel"
2403
2404	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2405
2406	# GET MAKE OUTPUT
2407	if [[ $? != 0 ]]
2408	then
2409	printf "\n +++ error during make."
2410	answer=dummy
2411	printf "\n\n"
2412	if [[ $silent == false ]]
2413	then
2414	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2415	do
2416	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2417	read answer
2418	done
2419	if [[ $answer = a \|\| $answer = A ]]
2420	then
2421	printf "\n +++ Aborting..."
2422	rm -rf $check_sources
2423	locat=normal; exit
2424	else
2425	skip_check=true
2426	fi
2427	else
2428	skip_check=true
2429	fi
2430	fi
2431	else
2432	cp $PALM_BIN/check_namelist_files.x ./
2433	fi
2434
2435	cp $filename_input ./PARIN
2436	if [[ $check_restart == 1 ]]
2437	then
2438	cp $filenamef ./PARINF
2439	fi
2440
2441	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2442	then
2443	printf "\n *** adding topography data"
2444	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2445
2446	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2447	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2448	# WHICH REQUIRE SUFFICIENT MEMORY
2449	ulimit -s unlimited
2450	fi
2451
2452	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2453	cat > ENVPAR << %%END%%
2454	&envpar run_identifier = '$fname', host = '$host',
2455	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2456	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2457	maximum_cpu_time_allowed = ${cpumax}.,
2458	revision = '$global_revision',
2459	local_dvrserver_running = $local_dvrserver_running /
2460
2461	%%END%%
2462
2463	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2464	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2465	printf "\n +++ WARNING: check_namelist_files.x not found."
2466	answer=dummy
2467	printf "\n\n"
2468
2469	if [[ $silent == false ]]
2470	then
2471	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2472	do
2473	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2474	read answer
2475	done
2476	if [[ $answer = a \|\| $answer = A ]]
2477	then
2478	printf "\n +++ Aborting..."
2479	rm -rf $check_sources
2480	locat=normal; exit
2481	else
2482	printf "\n *** skipping parameter file check."
2483
2484	fi
2485	fi
2486
2487	elif [[ $skip_check == false ]]
2488	then
2489	# STARTING THE PARAMETER FILE CHECK
2490	printf "\n\n *** starting parameter file check..."
2491
2492	# CHECKING THE P3D FILE
2493	printf "\n\n (1) checking $filename_input"
2494	echo "$numprocs 0 0" > VARIN
2495	errors=`./check_namelist_files.x < VARIN 2>&1`
2496
2497	check_error=false
2498	if [[ "$errors" == "" ]]
2499	then
2500	printf " --> o.k."
2501	else
2502	printf " --> failed."
2503	check_error=true
2504	printf "\n\n $errors"
2505	fi
2506
2507	# CHECKING THE PD3F FILE IF NECESSARY
2508	if [[ $check_restart == 1 && $check_error == false ]]
2509	then
2510	printf "\n\n (2) checking $filenamef"
2511
2512	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2513	found=false
2514	cat PARINF\|while read line
2515	do
2516	line=$(echo $line\|sed 's/ //g')
2517	if [[ $line == "&inipar" ]]
2518	then
2519	start_search=true
2520	fi
2521
2522	if [[ $start_search == true ]]
2523	then
2524	if [[ $line == "initializing_actions='read_restart_data'" ]]
2525	then
2526	found=true
2527	break
2528	fi
2529	fi
2530
2531	if [[ $line == "/" ]]
2532	then
2533	start_search=false
2534	fi
2535
2536	done
2537
2538	if [[ $found = false ]]
2539	then
2540	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2541	printf "\n in &inipar list in $fname$p3df_suffix."
2542	rm -rf $check_sources
2543	locat=check_namelist; exit
2544	fi
2545
2546	# READ max_user_pr FROM FILES
2547	if [[ -f parin_for_check ]]
2548	then
2549	read max_pr_user < parin_for_check
2550	else
2551	max_user_pr=0
2552	fi
2553
2554	echo "$numprocs 1 $max_pr_user" > VARIN
2555	errors=`./check_namelist_files.x < VARIN 2>&1`
2556
2557	if [[ "$errors" == "" ]]
2558	then
2559	printf " --> o.k."
2560	else
2561	printf " --> failed."
2562	check_error=true
2563	printf "\n\n $errors"
2564	fi
2565	fi
2566
2567	# REPORT ERRORS AND CONTINUE/EXIT
2568	if [[ $check_error == true ]]
2569	then
2570	printf "\n +++ errors found in the parameter file!\n"
2571	answer=dummy
2572	printf "\n\n"
2573
2574	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2575	do
2576	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2577	read answer
2578	done
2579
2580	if [[ $answer = a \|\| $answer = A ]]
2581	then
2582	printf "\n +++ Aborting..."
2583	rm -rf $check_sources
2584	locat=normal; exit
2585	fi
2586	else
2587	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2588	fi
2589	rm -rf $check_sources
2590	fi
2591	else
2592	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2593	fi
2594
2595	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2596	rm -rf $check_sources
2597	cd $working_directory
2598
2599
2600	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2601	# CHENDE AKTIONEN DURCHGEFUEHRT
2602	if [[ $do_batch = false ]]
2603	then
2604
2605
2606	# TEMPORAEREN KATALOG ERZEUGEN
2607	mkdir -p $TEMPDIR
2608	chmod go+rx $TEMPDIR
2609	tmpcreate=true
2610
2611	# set striping on lustre file system
2612	# if [[ $localhost = lcsgih ]]
2613	# then
2614	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2615	# lfs getstripe $TEMPDIR
2616	# fi
2617
2618
2619	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2620	# TEMPORAERES VERZEICHNIS KOPIEREN
2621	if [[ $do_compile = true ]]
2622	then
2623
2624	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2625	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2626	if [[ $localhost = nech ]]
2627	then
2628	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2629	if mkdir -p $TEMPDIR_COMPILE
2630	then
2631	printf "\n *** \"$TEMPDIR_COMPILE\" "
2632	printf "\n is generated as temporary directory for cross compiling\n"
2633	else
2634	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2635	printf "\n needed for cross compilation failed"
2636	locat=compile
2637	exit
2638	fi
2639	else
2640	TEMPDIR_COMPILE=$TEMPDIR
2641	fi
2642
2643
2644	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2645	line=""
2646	grep "%depository_path" $config_file > tmp_mrun
2647	while read line
2648	do
2649	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2650	then
2651	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2652	then
2653	global_depository_path=`echo $line \| cut -d" " -s -f2`
2654	fi
2655	fi
2656	done < tmp_mrun
2657
2658	line=""
2659	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2660	while read line
2661	do
2662	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2663	then
2664	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2665	then
2666	local_depository_path=`echo $line \| cut -d" " -s -f2`
2667	fi
2668	fi
2669	done < tmp_mrun
2670
2671	if [[ "$local_depository_path" = "" ]]
2672	then
2673	if [[ "$global_depository_path" != "" ]]
2674	then
2675	local_depository_path=$global_depository_path
2676	else
2677	printf "\n\n +++ no depository path found in configuration file"
2678	printf "\n for local host \"$localhost\" "
2679	printf "\n please set \"\%depository_path\" in configuration file\n"
2680	locat=config_file; exit
2681	fi
2682	fi
2683	eval local_depository_path=$local_depository_path
2684	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2685	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2686
2687
2688	basename=`print $mainprog \| cut -f1 -d"."`
2689	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2690	if [[ ! -f $make_depository ]]
2691	then
2692	printf "\n"
2693	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2694	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2695	else
2696	cp $make_depository $TEMPDIR_COMPILE
2697	cd $TEMPDIR_COMPILE
2698	tar -xf $make_depository > /dev/null 2>&1
2699	cd - > /dev/null
2700	fi
2701
2702	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2703
2704	else
2705
2706	cp $executable ${TEMPDIR}/a.out
2707
2708	fi
2709
2710
2711	# WECHSEL IN TEMPORAEREN KATALOG
2712	cd $TEMPDIR
2713	printf "\n *** changed to temporary directory: $TEMPDIR"
2714
2715
2716	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2717	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2718	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2719	# ERMITTELN
2720	(( i = 0 ))
2721	while (( i < iout ))
2722	do
2723	(( i = i + 1 ))
2724	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2725	then
2726	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2727	else
2728	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2729	fi
2730	done
2731
2732
2733	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2734	if [[ $do_compile = true ]]
2735	then
2736
2737
2738	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2739	printf "\n\n\n *** compilation starts \n$striche\n"
2740	printf " *** compilation with make using following options:\n"
2741	printf " make depository: $make_depository"
2742	if [[ "$mopts" != "" ]]
2743	then
2744	printf " make options: $mopts\n"
2745	fi
2746	printf " compilername: $compiler_name\n"
2747	printf " compiler options: $fopts\n"
2748	printf " preprocessor directives: $cpp_options \n"
2749	printf " linker options: $lopts \n"
2750	if [[ "$modules" != "" ]]
2751	then
2752	printf " modules to be load: $modules \n"
2753	fi
2754	printf " source code files: $source_list \n"
2755
2756	if [[ $localhost = nech ]]
2757	then
2758	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2759	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2760	cp $TEMPDIR_COMPILE/a.out .
2761	[[ $? != 0 ]] && compile_error=true
2762	rm -rf $TEMPDIR_COMPILE
2763	elif [[ $localhost = ibmh ]]
2764	then
2765	printf " compiler is called via ssh on \"plogin1\" \n"
2766	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2767	[[ ! -f a.out ]] && compile_error=true
2768	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2769	elif [[ $localhost = lcsgib ]]
2770	then
2771	printf " compiler is called via ssh on \"bicegate0\" \n"
2772	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2773	[[ ! -f a.out ]] && compile_error=true
2774	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2775	elif [[ $localhost = lcsgih ]]
2776	then
2777	printf " compiler is called via ssh on \"hicegate0\" \n"
2778	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2779	[[ ! -f a.out ]] && compile_error=true
2780	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2781	elif [[ $localhost = lcflow ]]
2782	then
2783	printf " compiler is called via ssh on \"flow\" \n"
2784	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2785	[[ ! -f a.out ]] && compile_error=true
2786	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2787	else
2788	[[ "$init_cmds" != "" ]] && eval $init_cmds
2789	[[ "$module_calls" != "" ]] && eval $module_calls
2790	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2791
2792	fi
2793
2794	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2795	then
2796	printf "\n +++ error occured while compiling or linking"
2797	locat=compile
2798
2799	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2800	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2801	# then
2802	exit
2803	# else
2804	# locat=normal
2805	# fi
2806	else
2807	printf "$striche\n *** compilation finished \n"
2808	fi
2809	fi
2810
2811
2812	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2813	if [[ $local_compile = true ]]
2814	then
2815	cd $HOME
2816	rm -rf $TEMPDIR
2817	locat=local_compile; exit
2818	fi
2819
2820
2821	# BEREITSTELLEN DER INPUT-DATEIEN
2822	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2823	(( i = 0 ))
2824	while (( i < iin ))
2825	do
2826	(( i = i + 1 ))
2827	if (( i == 1 ))
2828	then
2829	printf "\n\n *** providing INPUT-files:\n$striche"
2830	fi
2831
2832
2833	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2834	if [[ "${transin[$i]}" = unavailable ]]
2835	then
2836	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2837	then
2838	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2839	printf "\n is not available!"
2840	else
2841	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2842	printf "\n is not available!"
2843	fi
2844	continue
2845	fi
2846
2847	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2848	files_for_pes=false; datentyp=file
2849	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2850	then
2851	files_for_pes=true; datentyp=directory
2852	actionin[$i]=""
2853	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2854	then
2855	actionin[$i]=""
2856	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2857	then
2858	files_for_pes=true; datentyp=directory
2859	actionin[$i]="ar"
2860	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2861	then
2862	actionin[$i]="ar"
2863	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2864	then
2865	files_for_pes=true; datentyp=directory
2866	actionin[$i]="fl"
2867	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2868	then
2869	actionin[$i]="fl"
2870	fi
2871
2872	if [[ $files_for_pes = true ]]
2873	then
2874	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2875	else
2876	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2877	fi
2878
2879	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2880	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2881	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2882	# SERVER ZU HOLEN
2883	if [[ "${actionin[$i]}" = fl ]]
2884	then
2885	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2886	if [[ $files_for_pes = false ]]
2887	then
2888	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2889	then
2890	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2891	got_tmp[$i]=true
2892	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2893	then
2894	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2895	printf "\n *** trying to use backup copy in \"$WORK\" "
2896	cp $WORK/${frelin[$i]} ${localin[$i]}
2897	else
2898	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2899	printf "\n or \"$tmp_data_catalog\" does not exist!"
2900	printf "\n *** trying to get copy from archive"
2901	actionin[$i]=ar
2902	fi
2903	else
2904	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2905	then
2906	mkdir ${localin[$i]}
2907	cd $tmp_data_catalog/${frelin[$i]}
2908	for file in $(ls *)
2909	do
2910	ln $file $TEMPDIR/${localin[$i]}
2911	done
2912	cd $TEMPDIR
2913	got_tmp[$i]=true
2914	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2915	then
2916	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2917	printf "\n *** trying to use backup copy in \"$WORK\" "
2918	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2919	else
2920	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2921	printf "\n or \"$tmp_data_catalog\" does not exist!"
2922	printf "\n *** trying to get copy from archive"
2923	actionin[$i]=ar
2924	fi
2925	fi
2926	fi
2927
2928
2929	# DATEI LIEGT AUF ARCHIV-SERVER
2930	if [[ "${actionin[$i]}" = ar ]]
2931	then
2932
2933	if [[ $files_for_pes = false ]]
2934	then
2935	printf "\n file will be restored from archive-system ($archive_system)!"
2936	else
2937	printf "\n directory will be restored from archive-system ($archive_system)!"
2938	fi
2939
2940	file_restored=false
2941
2942	if [[ $archive_system = asterix ]]
2943	then
2944	do_stagein=true
2945	(( stagein_anz = 0 ))
2946	while [[ $do_stagein = true ]]
2947	do
2948	if [[ $files_for_pes = false ]]
2949	then
2950	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2951	else
2952	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2953	fi
2954	cat STAGEIN_OUTPUT
2955	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2956	then
2957	file_restored=true
2958	do_stagein=false
2959	else
2960	(( stagein_anz = stagein_anz + 1 ))
2961	if (( stagein_anz == 10 ))
2962	then
2963	printf "\n +++ stagein stoped after 10 tries"
2964	locat=stage
2965	exit
2966	fi
2967	printf "\n +++ restoring from archive failed, trying again:"
2968	sleep 900
2969	fi
2970	done
2971	elif [[ $archive_system = DMF ]]
2972	then
2973	if [[ $files_for_pes = false ]]
2974	then
2975	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2976	locat=DMF
2977	exit
2978	else
2979	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2980	cp -r $ARCHIVE/${frelin[$i]} $PWD
2981	file_restored=true
2982	fi
2983	elif [[ $archive_system = tivoli ]]
2984	then
2985	if [[ $files_for_pes = false ]]
2986	then
2987	if [[ $localhost = lcsgih ]]
2988	then
2989	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2990	else
2991	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2992	fi
2993	else
2994	(( inode = 0 ))
2995	while (( inode < nodes ))
2996	do
2997	if [[ $localhost = lcsgih ]]
2998	then
2999	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3000	else
3001	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3002	fi
3003	(( inode = inode + 1 ))
3004	done
3005	fi
3006	file_restored=true
3007	elif [[ $archive_system = ut ]]
3008	then
3009	if [[ $files_for_pes = false ]]
3010	then
3011	cp $UT/${frelin[$i]} .
3012	else
3013	(( inode = 0 ))
3014	while (( inode < nodes ))
3015	do
3016	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3017	(( inode = inode + 1 ))
3018	done
3019	fi
3020	file_restored=true
3021	else
3022	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3023	locat=rearchive
3024	exit
3025	fi
3026
3027	if [[ $file_restored = true ]]
3028	then
3029
3030	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3031	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3032	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3033	if [[ $files_for_pes = false ]]
3034	then
3035	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3036	else
3037	mkdir $tmp_data_catalog/${frelin[$i]}
3038	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3039	fi
3040	got_tmp[$i]=true
3041
3042	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3043	mv ${frelin[$i]} ${localin[$i]}
3044
3045	fi
3046	fi
3047
3048
3049	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3050	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3051	then
3052
3053	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3054	then
3055
3056	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3057	printf "\n file will be provided for $numprocs processors"
3058	mkdir ${localin[$i]}
3059	ival=$numprocs
3060	(( ii = 0 ))
3061	while (( ii <= ival-1 ))
3062	do
3063	if (( ii < 10 ))
3064	then
3065	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3066	elif (( ii < 100 ))
3067	then
3068	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3069	elif (( ii < 1000 ))
3070	then
3071	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3072	else
3073	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3074	fi
3075	(( ii = ii + 1 ))
3076	done
3077
3078	else
3079
3080	if [[ $files_for_pes = true ]]
3081	then
3082
3083	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3084	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3085	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3086	# PER MOVE UMBENANNT WERDEN
3087	printf "\n providing $numprocs files for the respective processors"
3088	mkdir ${localin[$i]}
3089	if [[ $link_local_input = true ]]
3090	then
3091	printf " using ln -f\n"
3092	cd ${absnamein[$i]}
3093	for file in $(ls *)
3094	do
3095	ln -f $file ${localin[$i]}
3096	done
3097	cd $TEMPDIR
3098	fi
3099	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3100	if [[ ! -f "${localin[$i]}/_0000" ]]
3101	then
3102	if [[ $link_local_input = true ]]
3103	then
3104	printf " ln failed for .../_0000, using cp...\n"
3105	fi
3106	cp -r ${absnamein[$i]}/* ${localin[$i]}
3107	fi
3108
3109	else
3110	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3111	if [[ $link_local_input = true ]]
3112	then
3113	printf " using ln -f\n"
3114	ln -f ${absnamein[$i]} ${localin[$i]}
3115	fi
3116	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3117	if [[ ! -f "${localin[$i]}" ]]
3118	then
3119	if [[ $link_local_input = true ]]
3120	then
3121	printf " ln failed, using cp...\n"
3122	fi
3123	cp ${absnamein[$i]} ${localin[$i]}
3124	fi
3125	fi
3126	fi
3127	fi
3128
3129	done
3130	if (( i != 0 ))
3131	then
3132	printf "\n$striche\n *** all INPUT-files provided \n"
3133	fi
3134
3135
3136	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3137	(( i = 0 ))
3138	while (( i < iic ))
3139	do
3140	(( i = i + 1 ))
3141	if (( i == 1 ))
3142	then
3143	printf "\n\n *** execution of INPUT-commands:\n$striche"
3144	fi
3145	printf "\n >>> ${in_command[$i]}"
3146	eval ${in_command[$i]}
3147	if (( i == iic ))
3148	then
3149	printf "\n$striche\n"
3150	fi
3151	done
3152
3153
3154	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3155	cpurest=${cpumax}.
3156
3157
3158	# START DVR STREAMING SERVER
3159	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3160	then
3161	if [[ "$dvr_server" != "" ]]
3162	then
3163
3164	printf "\n\n *** preparing the dvr streaming server configuration file"
3165
3166	# Check, if a dvr server is already running
3167	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3168	if [[ "$running_dvrserver_id" != "" ]]
3169	then
3170
3171	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3172	printf "\n This server is used instead starting a new one!"
3173	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3174
3175	else
3176
3177	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3178	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3179	then
3180	cp ${PALM_BIN}/.dvrserver.config .
3181
3182	# Entering the BASEDIR, UID and GID into this file
3183	user_id=`id -u`
3184	group_id=`id -g`
3185	# & is needed as seperator, because TEMPDIR contains /
3186	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3187	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3188	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3189	mv .dvrserver.3 .dvrserver.config
3190	rm .dvrserver.1 .dvrserver.2
3191
3192	# Start dvr server in background, get his id and print on terminal
3193	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3194	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3195	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3196	local_dvrserver_running=.TRUE.
3197	else
3198	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3199	printf "\n \"$PALM_BIN\" "
3200	locat=dvr
3201	exit
3202	fi
3203
3204	fi
3205
3206	else
3207	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3208	fi
3209	fi
3210
3211
3212	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3213	# LESEN VON PALM)
3214	cat > ENVPAR << %%END%%
3215	&envpar run_identifier = '$fname', host = '$localhost',
3216	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3217	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3218	maximum_cpu_time_allowed = ${cpumax}.,
3219	revision = '$global_revision',
3220	local_dvrserver_running = $local_dvrserver_running /
3221
3222	%%END%%
3223
3224
3225	# PROGRAMMSTART
3226	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3227	PATH=$PATH:$TEMPDIR
3228
3229	# MPI debug option (argument checking, slows down execution due to increased latency)
3230	if [[ "$mpi_debug" = true ]]
3231	then
3232	export MPI_CHECK_ARGS=1
3233	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3234	fi
3235
3236	if [[ "$totalview" = true ]]
3237	then
3238	printf "\n *** totalview debugger will be used"
3239	tv_opt="-tv"
3240	else
3241	tv_opt=""
3242	fi
3243
3244	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3245	then
3246	if [[ "$ENVIRONMENT" = BATCH ]]
3247	then
3248	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3249	then
3250	printf "\n +++ debug is allowed in interactive mode only"
3251	locat=debug
3252	exit
3253	fi
3254	fi
3255	if [[ $localhost = ibmh ]]
3256	then
3257
3258	# SETUP THE IBM MPI ENVIRONMENT
3259	export MP_SHARED_MEMORY=yes
3260	export AIXTHREADS_SCOPE=S
3261	export OMP_NUM_THREADS=$threads_per_task
3262	export AUTHSTATE=files
3263	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3264
3265	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3266	export MP_ADAPTER_USE=shared
3267	export MP_CPU_USE=multiple
3268	export MP_TIMEOUT=1200
3269
3270	unset MP_TASK_AFFINITY
3271
3272	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3273	#(( ii = 1 ))
3274	#while (( ii <= $numprocs ))
3275	#do
3276	# echo $localhost_realname >> hostfile
3277	# (( ii = ii + 1 ))
3278	#done
3279	#export MP_HOSTFILE=hostfile
3280
3281	if [[ "$LOADLBATCH" = yes ]]
3282	then
3283	totalview poe a.out $ROPTS
3284	else
3285	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3286	export TVDSVRLAUNCHCMD=ssh
3287	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3288	fi
3289	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3290	then
3291	# CURRENTLY NO DEBUGGER ON LCSGI
3292	if [[ $run_coupled_model = true ]]
3293	then
3294	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3295	locat=debug
3296	exit
3297	else
3298	echo "no_coupling" > runfile_atmos
3299	fi
3300	(( ii = $numprocs / $threads_per_task ))
3301	export OMP_NUM_THREADS=$threads_per_task
3302	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3303	if [[ $threads_per_task != 1 ]]
3304	then
3305	printf "\n threads per task: $threads_per_task"
3306	fi
3307	printf "\n\n"
3308	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3309	then
3310	# export MPI_LAUNCH_TIMEOUT=360
3311	if [[ "$totalview" = true ]]
3312	then
3313	printf "\n running totalview debugger"
3314	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3315	else
3316	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3317	fi
3318	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3319	then
3320	# ulimit -s 300000 # A too large stack size causes problems
3321	# export MV2_NUM_PORTS=2
3322	# export MV2_CPU_MAPPING=0:1:2:3
3323	if [[ "$totalview" = true ]]
3324	then
3325	printf "\n running totalview debugger"
3326	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3327	else
3328	mpiexec ./a.out $ROPTS < runfile_atmos
3329	fi
3330	fi
3331	else
3332	printf "\n +++ no debug available on \"$localhost\" "
3333	printf "\n or not implemented in mrun so far"
3334	locat=debug
3335	exit
3336	fi
3337
3338	# end debug mode
3339	else
3340
3341	# normal execution
3342	if [[ -n $numprocs ]]
3343	then
3344	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3345	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3346	then
3347	# SETUP THE IBM MPI ENVIRONMENT
3348	if [[ $host != ibmh && $host != ibmkisti ]]
3349	then
3350	export MP_SHARED_MEMORY=yes
3351	export AIXTHREAD_SCOPE=S
3352	export OMP_NUM_THREADS=$threads_per_task
3353	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3354	export AUTHSTATE=files
3355	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3356	# export MP_PRINTENV=yes
3357
3358	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3359	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3360	export MP_WAIT_MODE=poll
3361	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3362	fi
3363
3364	if [[ $host = ibmkisti ]]
3365	then
3366	export LANG=en_US
3367	export MP_SHARED_MEMORY=yes
3368	if [[ $threads_per_task = 1 ]]
3369	then
3370	export MP_SINGLE_THREAD=yes
3371	export MEMORY_AFFINITY=MCM
3372	else
3373	export OMP_NUM_THREADS=$threads_per_task
3374	fi
3375	fi
3376
3377	if [[ "$LOADLBATCH" = yes ]]
3378	then
3379	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3380	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3381	then
3382	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3383	else
3384	if [[ $run_coupled_model = false ]]
3385	then
3386	if [[ "$ocean_file_appendix" = true ]]
3387	then
3388	echo "precursor_ocean" > runfile_atmos
3389	else
3390	echo "precursor_atmos" > runfile_atmos
3391	fi
3392	else
3393	(( iia = $numprocs_atmos / $threads_per_task ))
3394	(( iio = $numprocs_ocean / $threads_per_task ))
3395	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3396	printf "\n using $coupled_mode coupling"
3397	printf "\n\n"
3398	echo "coupled_run $iia $iio" > runfile_atmos
3399	fi
3400	poe ./a.out $ROPTS < runfile_atmos
3401	fi
3402	else
3403	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3404	then
3405	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3406	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3407	then
3408	if [[ -f $hostfile ]]
3409	then
3410	cp $hostfile hostfile
3411	else
3412	(( ii = 1 ))
3413	while (( ii <= $numprocs ))
3414	do
3415	echo $localhost_realname >> hostfile
3416	(( ii = ii + 1 ))
3417	done
3418	fi
3419	export MP_HOSTFILE=hostfile
3420	if [[ $run_coupled_model = false ]]
3421	then
3422	if [[ "$ocean_file_appendix" = true ]]
3423	then
3424	echo "precursor_ocean" > runfile_atmos
3425	else
3426	echo "precursor_atmos" > runfile_atmos
3427	fi
3428	else
3429	(( iia = $numprocs_atmos / $threads_per_task ))
3430	(( iio = $numprocs_ocean / $threads_per_task ))
3431	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3432	printf "\n using $coupled_mode coupling"
3433	printf "\n\n"
3434	echo "coupled_run $iia $iio" > runfile_atmos
3435	fi
3436	if [[ $localhost = ibmy ]]
3437	then
3438	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3439	else
3440	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3441	fi
3442
3443	else
3444	if [[ "$host_file" = "" ]]
3445	then
3446	printf "\n +++ no hostfile given in configuration file"
3447	locat=config_file
3448	exit
3449	else
3450	eval host_file=$host_file
3451	fi
3452	export MP_HOSTFILE=$host_file
3453	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3454	fi
3455	fi
3456	elif [[ $host = nech \|\| $host = necriam ]]
3457	then
3458	(( ii = nodes ))
3459	if [[ $ii = 1 ]]
3460	then
3461	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3462	export MPIPROGINF=YES
3463	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3464	echo "*** execution on single node with mpirun"
3465	mpirun -np $numprocs ./a.out $ROPTS
3466	else
3467	(( i = 0 ))
3468	while (( i < ii ))
3469	do
3470	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3471	(( i = i + 1 ))
3472	done
3473
3474	echo "#!/bin/sh" > mpi_exec_shell
3475	echo " " >> mpi_exec_shell
3476	echo "set -u" >> mpi_exec_shell
3477	echo "F_ERRCNT=0" >> mpi_exec_shell
3478	echo "MPIPROGINV=YES" >> mpi_exec_shell
3479	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3480	echo "cpurest=$cpurest" >> mpi_exec_shell
3481	echo "fname=$fname" >> mpi_exec_shell
3482	echo "localhost=$localhost" >> mpi_exec_shell
3483	echo "return_addres=$return_addres" >> mpi_exec_shell
3484	echo "return_username=$return_username" >> mpi_exec_shell
3485	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3486	echo "write_binary=$write_binary" >> mpi_exec_shell
3487	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3488	echo " " >> mpi_exec_shell
3489	echo "export F_ERRCNT" >> mpi_exec_shell
3490	echo "export MPIPROGINV" >> mpi_exec_shell
3491	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3492	echo "export cpurest" >> mpi_exec_shell
3493	echo "export fname" >> mpi_exec_shell
3494	echo "export localhost" >> mpi_exec_shell
3495	echo "export return_addres" >> mpi_exec_shell
3496	echo "export return_username" >> mpi_exec_shell
3497	echo "export tasks_per_node" >> mpi_exec_shell
3498	echo "export write_binary" >> mpi_exec_shell
3499	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3500	echo " " >> mpi_exec_shell
3501	echo "exec ./a.out" >> mpi_exec_shell
3502
3503	chmod u+x mpi_exec_shell
3504	export MPIPROGINF=YES
3505	mpirun -f multinode_config &
3506	wait
3507
3508	fi
3509	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3510	then
3511
3512	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3513	# DOES NOT EXIST
3514	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3515	then
3516	if [[ -f $hostfile ]]
3517	then
3518	cp $hostfile hostfile
3519	(( ii = $numprocs / $threads_per_task ))
3520	else
3521	(( ii = 1 ))
3522	while (( ii <= $numprocs / $threads_per_task ))
3523	do
3524	echo $localhost_realname >> hostfile
3525	(( ii = ii + 1 ))
3526	done
3527	fi
3528	eval zeile=\"`head -n $ii hostfile`\"
3529	printf "\n *** running on: $zeile"
3530	fi
3531
3532	(( ii = $numprocs / $threads_per_task ))
3533	export OMP_NUM_THREADS=$threads_per_task
3534	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3535	if [[ $threads_per_task != 1 ]]
3536	then
3537	# increase stack size to unlimited, because large runs
3538	# may abort otherwise
3539	ulimit -Ss unlimited
3540	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3541	fi
3542	if [[ $run_coupled_model = false ]]
3543	then
3544	if [[ "$ocean_file_appendix" = true ]]
3545	then
3546	echo "precursor_ocean" > runfile_atmos
3547	else
3548	echo "precursor_atmos" > runfile_atmos
3549	fi
3550	printf "\n\n"
3551	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3552	then
3553	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3554	then
3555	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3556	# export MPI_DSM_DISTRIBUTE=1
3557	# MPI_DSM_CPULIST: pin MPI processes to cores
3558	if [[ $use_openmp = false ]]
3559	then
3560	if [[ "$sgi_feature" = ice2 ]]
3561	then
3562	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3563	else
3564	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3565	fi
3566	else
3567	unset MPI_DSM_CPULIST
3568	fi
3569	# MPI_IB_RAILS: use both IB rails on ICE2
3570	export MPI_BUFS_PER_HOST=512
3571	export MPI_IB_RAILS=2
3572	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3573	export MPI_CONNECTIONS_THRESHOLD=8192
3574	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3575	export MPI_TYPE_DEPTH=20
3576	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3577	export MPI_GROUP_MAX=64
3578	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3579	if [[ $use_openmp = true ]]
3580	then
3581	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3582	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3583	else
3584	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3585	fi
3586
3587	# next is test for openmp usage
3588	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3589	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3590	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3591	then
3592	export MV2_NUM_PORTS=2
3593	# The default setting of MV2_CPU_MAPPING gives best results
3594	# export MV2_ENABLE_AFFINITY=1
3595	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3596	# if [[ "$sgi_feature" = ice2 ]]
3597	# then
3598	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3599	# else
3600	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3601	# fi
3602	if [[ $use_openmp = true ]]
3603	then
3604	unset MV2_CPU_MAPPING
3605	export MV2_ENABLE_AFFINITY=0
3606	fi
3607	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3608	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3609	if [[ $use_openmp = true ]]
3610	then
3611	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3612	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3613	else
3614	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3615	fi
3616	elif [[ "$mpilib" = impi ]]
3617	then
3618	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3619	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3620	fi
3621	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3622	then
3623	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3624	elif [[ $host = lcflow ]]
3625	then
3626	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3627	elif [[ $host = lcsb ]]
3628	then
3629	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3630	elif [[ $host = lckiaps ]]
3631	then
3632	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3633	elif [[ $host = lckyu* ]]
3634	then
3635	mpiexec -n $ii ./a.out < runfile_atmos $ROPTS
3636	else
3637	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3638	fi
3639	else
3640
3641	# currently there is no full MPI-2 support on ICE and XT4
3642	(( iia = $numprocs_atmos / $threads_per_task ))
3643	(( iio = $numprocs_ocean / $threads_per_task ))
3644	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3645	printf "\n using $coupled_mode coupling"
3646	printf "\n\n"
3647
3648	if [[ $coupled_mode = "mpi2" ]]
3649	then
3650	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3651	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3652	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3653	then
3654
3655	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3656	then
3657	# export MPI_LAUNCH_TIMEOUT=360
3658	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3659	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3660	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3661	then
3662	# ulimit -s 300000 # A too large stack size causes problems
3663	# export MV2_NUM_PORTS=2
3664	# export MV2_CPU_MAPPING=0:1:2:3
3665	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3666	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3667	fi
3668
3669	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3670	then
3671
3672	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3673	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3674
3675	else
3676	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3677	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3678	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3679	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3680	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3681	fi
3682	wait
3683
3684	else
3685
3686	echo "coupled_run $iia $iio" > runfile_atmos
3687	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3688	then
3689
3690	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3691	then
3692	# export MPI_LAUNCH_TIMEOUT=360
3693	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3694	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3695	then
3696	# ulimit -s 300000 # A too large stack size causes problems
3697	# export MV2_NUM_PORTS=2
3698	# export MV2_CPU_MAPPING=0:1:2:3
3699	mpiexec ./a.out $ROPTS < runfile_atmos
3700	fi
3701
3702	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3703	then
3704
3705	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3706
3707	elif [[ $host = lck \|\| $host = lckordi ]]
3708	then
3709	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3710	fi
3711	wait
3712	fi
3713
3714	fi
3715	elif [[ $host = lckyoto ]]
3716	then
3717	set -xv
3718	export P4_RSHCOMMAND=plesh
3719	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3720	if [[ "$ENVIRONMENT" = BATCH ]]
3721	then
3722	if [[ "$cond2" = fujitsu ]]
3723	then
3724	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3725	elif [[ "cond2" = pgi ]]
3726	then
3727	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3728	else
3729	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3730	fi
3731	else
3732	if [[ "$cond2" = "" ]]
3733	then
3734	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3735	else
3736	mpirun -np $numprocs ./a.out $ROPTS
3737	fi
3738	fi
3739	set +xv
3740	elif [[ $host = lctit ]]
3741	then
3742	export OMP_NUM_THREADS=$threads_per_task
3743	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3744	if [[ "$threads_per_task" != 1 ]]
3745	then
3746	export MV2_ENABLE_AFFINITY=0
3747	fi
3748	echo "----- PBS_NODEFILE content:"
3749	cat $PBS_NODEFILE
3750	echo "-----"
3751	(( ii = $numprocs / $threads_per_task ))
3752	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3753	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3754	else
3755	mpprun -n $numprocs a.out $ROPTS
3756	fi
3757	[[ $? != 0 ]] && execution_error=true
3758
3759
3760	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3761	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3762	then
3763	apprentice
3764	fi
3765	else
3766	a.out $ROPTS
3767	fi
3768	fi
3769	if [[ $? != 0 \|\| $execution_error = true ]]
3770	then
3771
3772	# ABBRUCH BEI LAUFZEITFEHLER
3773	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3774	printf "\n +++ runtime error occured"
3775	locat=execution
3776	exit
3777	else
3778	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3779	printf "\n$striche\n *** execution finished \n"
3780
3781	# Stop the dvr streaming server and process the dvr output in order
3782	# to create dvrs- and html-files containing all streams
3783	if [[ "$dvrserver_id" != "" ]]
3784	then
3785	kill $dvrserver_id
3786	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3787
3788	# If there is a directory, data have been output by the
3789	# streaming server. Otherwise, user has chosen dvrp_output=local
3790	if [[ -d DATA_DVR ]]
3791	then
3792
3793	# Add the current dvr configuration file to the dvr output
3794	# directory
3795	cp .dvrserver.config DATA_DVR
3796
3797	# Process the dvr output (option -s for also generating
3798	# sequence mode data)
3799	process_dvr_output -d DATA_DVR -f $fname -s
3800
3801	else
3802
3803	# Process the local output
3804	process_dvr_output -l -d DATA_DVR -f $fname
3805
3806	fi
3807
3808	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3809	then
3810
3811	# Process dvr output generated in local mode (dvrp_output=local)
3812	process_dvr_output -l -d DATA_DVR -f $fname
3813
3814	fi
3815	fi
3816
3817
3818
3819	# Call of combine_plot_fields in order to merge single files written
3820	# by each PE into one file.
3821	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3822	then
3823	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3824	printf "\n 2d- and/or 3d-data may be incomplete!"
3825	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3826	elif [[ "$combine_plot_fields" == true ]]
3827	then
3828	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3829	combine_plot_fields${block}.x
3830	else
3831	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3832	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3833	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3834	fi
3835
3836
3837
3838	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3839	(( i = 0 ))
3840	while (( i < ioc ))
3841	do
3842	(( i = i + 1 ))
3843	if (( i == 1 ))
3844	then
3845	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3846	fi
3847	printf "\n >>> ${out_command[$i]}"
3848	eval ${out_command[$i]}
3849	if (( i == ioc ))
3850	then
3851	printf "\n$striche\n"
3852	fi
3853	done
3854
3855
3856	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3857	if [[ $do_trace = true ]]
3858	then
3859	printf "\n\n"
3860	ls -al
3861	fi
3862
3863
3864
3865	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3866	(( i = 0 ))
3867	while (( i < iout ))
3868	do
3869	(( i = i + 1 ))
3870	if (( i == 1 ))
3871	then
3872	printf "\n\n *** saving OUTPUT-files:\n$striche"
3873	fi
3874
3875	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3876	files_for_pes=false; filetyp=file
3877	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3878	then
3879	files_for_pes=true; filetyp=directory
3880	actionout[$i]=""
3881	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3882	then
3883	actionout[$i]=""
3884	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3885	then
3886	files_for_pes=true; filetyp=directory
3887	actionout[$i]="ar"
3888	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3889	then
3890	actionout[$i]="ar"
3891	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3892	then
3893	files_for_pes=true; filetyp=directory
3894	actionout[$i]="fl"
3895	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3896	then
3897	actionout[$i]="fl"
3898	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3899	then
3900	files_for_pes=true; filetyp=directory
3901	actionout[$i]="tr"
3902	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3903	then
3904	actionout[$i]="tr"
3905	fi
3906
3907	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3908	then
3909	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3910	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3911	then
3912	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3913	else
3914
3915
3916	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3917	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3918	# REMOTE-RECHNUNGEN
3919	if [[ "${actionout[$i]}" = tr ]]
3920	then
3921	if [[ $localhost != $fromhost ]]
3922	then
3923	if [[ $files_for_pes = false ]]
3924	then
3925	cps=""
3926	cst=""
3927	else
3928	cps=-c
3929	cst="/"
3930	fi
3931	if [[ $localhost = nech ]]
3932	then
3933
3934	# TRANSFER IN EIGENSTAENDIGEM JOB
3935	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3936	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3937	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3938	if [[ $files_for_pes = false ]]
3939	then
3940	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3941	else
3942	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3943	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3944	fi
3945
3946	echo "set -x" > transfer_${localout[$i]}
3947	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3948
3949	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3950	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3951	printf "\n or higher cycle\n"
3952	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3953
3954	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3955
3956	if [[ $localhost = nech ]]
3957	then
3958	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3959	else
3960	if [[ "$LOGNAME" = b323013 ]]
3961	then
3962	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3963	else
3964	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3965	fi
3966	fi
3967
3968	else
3969
3970	# TRANSFER INNERHALB DIESES JOBS
3971	transfer_failed=false
3972	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3973	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3974	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3975	[[ $? != 0 ]] && transfer_failed=true
3976
3977	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3978	# LOKALER MASCHINE ANLEGEN
3979	if [[ $transfer_failed = true ]]
3980	then
3981	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3982	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3983
3984	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3985	# ANLEGEN.
3986	eval local_catalog=${pathout[$i]}
3987	if [[ ! -d $local_catalog ]]
3988	then
3989	printf " *** local directory does not exist. Trying to create:\n"
3990	printf " $local_catalog \n"
3991	mkdir -p $local_catalog
3992	fi
3993	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3994	transfer_problems=true
3995	fi
3996	fi
3997	else
3998
3999	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4000	actionout[$i]=""
4001	fi
4002	fi
4003
4004
4005	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4006	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4007	# REMOTE-RECHNUNGEN
4008	if [[ "${actionout[$i]}" = tra ]]
4009	then
4010	if [[ $localhost != $fromhost ]]
4011	then
4012	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4013	then
4014
4015	# TRANSFER IN EIGENSTAENDIGEM JOB
4016	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4017	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4018	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4019	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4020
4021	echo "set -x" > transfer_${localout[$i]}
4022	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4023
4024	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4025	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4026	printf "\n or higher cycle\n"
4027	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4028
4029	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4030
4031	if [[ $localhost = nech ]]
4032	then
4033	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4034	else
4035	if [[ $LOGNAME = b323013 ]]
4036	then
4037	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4038	else
4039	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4040	fi
4041	fi
4042
4043	else
4044
4045	# TRANSFER INNERHALB DIESES JOBS
4046	transfer_failed=false
4047	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4048	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4049	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4050	[[ $? != 0 ]] && transfer_failed=true
4051
4052	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4053	# LOKALER MASCHINE ANLEGEN
4054	if [[ $transfer_failed = true ]]
4055	then
4056	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4057	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4058
4059	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4060	# ANLEGEN
4061	eval local_catalog=${pathout[$i]}
4062	if [[ ! -d $local_catalog ]]
4063	then
4064	printf " *** local directory does not exist. Trying to create:\n"
4065	printf " $local_catalog \n"
4066	mkdir -p $local_catalog
4067	fi
4068
4069	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4070	transfer_problems=true
4071	fi
4072	fi
4073	else
4074
4075	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4076	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4077	actionout[$i]=a
4078	fi
4079	fi
4080
4081
4082	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4083	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4084	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4085	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4086	if [[ "${actionout[$i]}" = fl ]]
4087	then
4088	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4089	chmod g+rx $tmp_data_catalog
4090	if [[ $files_for_pes = false ]]
4091	then
4092	printf "\n >>> OUTPUT: ${localout[$i]} to"
4093	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4094	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4095	else
4096	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4097	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4098	mkdir $tmp_data_catalog/${frelout[$i]}
4099	cd ${localout[$i]}
4100	for file in $(ls *)
4101	do
4102	ln -f $file $tmp_data_catalog/${frelout[$i]}
4103	done
4104	cd $TEMPDIR
4105	fi
4106
4107
4108	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4109	if [[ $store_on_archive_system = true ]]
4110	then
4111
4112	if [[ $archive_system = asterix ]]
4113	then
4114	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4115	if [[ $files_for_pes = false ]]
4116	then
4117	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4118	else
4119	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4120	fi
4121	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4122	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4123	echo "then" >> archive_${frelout[$i]}
4124	echo " do_stageout=false" >> archive_${frelout[$i]}
4125	echo "else" >> archive_${frelout[$i]}
4126	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4127	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4128	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4129	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4130	if [[ $files_for_pes = false ]]
4131	then
4132	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4133	else
4134	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4135	fi
4136	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4137	echo "fi" >> archive_${frelout[$i]}
4138	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4139	elif [[ $archive_system = DMF ]]
4140	then
4141	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4142	if [[ $files_for_pes = false ]]
4143	then
4144	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4145	locat=DMF
4146	exit
4147	else
4148	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4149	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4150	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4151	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4152	fi
4153	elif [[ $archive_system = tivoli ]]
4154	then
4155	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4156	if [[ $files_for_pes = false ]]
4157	then
4158	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4159	echo "set -x" >> archive_${frelout[$i]}
4160	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4161	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4162	else
4163
4164	echo "set -x" >> archive_${frelout[$i]}
4165	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4166	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4167	cd $tmp_data_catalog
4168	all_files=`ls -1 ${frelout[$i]}/*`
4169	cd - > /dev/null
4170	(( inode = 0 ))
4171	(( tp1 = tasks_per_node + 1 ))
4172	while (( inode < nodes ))
4173	do
4174	# echo "*** all_files = \"$all_files\" "
4175	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4176	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4177	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4178	# echo "*** files = \"$files\" "
4179	# echo "*** all_files = \"$all_files\" "
4180	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4181	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4182	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4183	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4184	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4185	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4186	(( inode = inode + 1 ))
4187	done
4188	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4189	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4190	fi
4191	elif [[ $archive_system = ut ]]
4192	then
4193	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4194	if [[ $files_for_pes = false ]]
4195	then
4196	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4197	echo "set -x" >> archive_${frelout[$i]}
4198	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4199	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4200	else
4201
4202	echo "set -x" >> archive_${frelout[$i]}
4203	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4204	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4205	cd $tmp_data_catalog
4206	all_files=`ls -1 ${frelout[$i]}/*`
4207	cd - > /dev/null
4208	(( inode = 0 ))
4209	(( tp1 = tasks_per_node + 1 ))
4210	while (( inode < nodes ))
4211	do
4212	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4213	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4214	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4215	(( inode = inode + 1 ))
4216	done
4217	fi
4218	elif [[ $archive_system = none ]]
4219	then
4220	printf " +++ archiving on $localhost not available!\n"
4221	fi
4222
4223	if [[ $archive_system != none ]]
4224	then
4225	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4226	then
4227	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4228	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4229	elif [[ $localhost = nech ]]
4230	then
4231	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4232	fi
4233	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4234	fi
4235	else
4236	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4237	fi
4238
4239
4240	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4241	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4242	if [[ $files_for_pes = false ]]
4243	then
4244	cat /dev/null > ${pathout[$i]}
4245	else
4246	mkdir -p ${pathout[$i]}
4247	fi
4248
4249	fi
4250
4251
4252	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4253	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4254	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4255	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4256	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4257	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4258	if [[ "${actionout[$i]}" = ar ]]
4259	then
4260	if [[ $files_for_pes = false ]]
4261	then
4262	printf "\n >>> OUTPUT: ${localout[$i]} to"
4263	printf "\n ${pathout[$i]}"
4264	printf "\n File will be copied to archive-system ($archive_system) !\n"
4265	else
4266	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4267	printf "\n ${pathout[$i]}"
4268	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4269	fi
4270	mv ${localout[$i]} ${frelout[$i]}
4271
4272	file_saved=false
4273
4274	if [[ $archive_system = asterix ]]
4275	then
4276	do_stageout=true
4277	(( stageout_anz = 0 ))
4278	while [[ $do_stageout = true ]]
4279	do
4280	if [[ $files_for_pes = false ]]
4281	then
4282	stageout ${frelout[$i]} > STAGE_OUTPUT
4283	else
4284	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4285	fi
4286	cat STAGE_OUTPUT
4287	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4288	then
4289	file_saved=true
4290	do_stageout=false
4291	else
4292	if [[ $files_for_pes = false ]]
4293	then
4294	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4295	else
4296	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4297	fi
4298	(( stageout_anz = stageout_anz + 1 ))
4299	if (( stageout_anz == 10 ))
4300	then
4301	printf "\n +++ stoped after 10 unsuccessful tries!"
4302	archive_save=false
4303	do_stageout=false
4304	else
4305	printf "\n *** new try to store on archive after 15 min:"
4306	sleep 900
4307	fi
4308	fi
4309	done
4310	elif [[ $archive_system = DMF ]]
4311	then
4312	if [[ $files_for_pes = false ]]
4313	then
4314	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4315	locat=DMF
4316	exit
4317	else
4318	rm -rf $ARCHIVE/${frelout[$i]}
4319	cp -r ${frelout[$i]} $ARCHIVE
4320	fi
4321	file_saved=true
4322	elif [[ $archive_system = tivoli ]]
4323	then
4324	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4325	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4326	# GELEGT WERDEN
4327	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4328	chmod g+rx $tmp_data_catalog
4329	if [[ $files_for_pes = false ]]
4330	then
4331	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4332	else
4333	mkdir $tmp_data_catalog/${frelout[$i]}
4334	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4335	fi
4336
4337	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4338	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4339	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4340	if [[ $files_for_pes = false ]]
4341	then
4342	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4343	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4344	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4345	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4346	else
4347	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4348	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4349	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4350	fi
4351
4352	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4353	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4354	file_saved=true
4355
4356	elif [[ $archive_system = ut ]]
4357	then
4358	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4359	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4360	# GELEGT WERDEN
4361	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4362	chmod g+rx $tmp_data_catalog
4363	if [[ $files_for_pes = false ]]
4364	then
4365	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4366	else
4367	mkdir $tmp_data_catalog/${frelout[$i]}
4368	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4369	fi
4370
4371	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4372	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4373	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4374	if [[ $files_for_pes = false ]]
4375	then
4376	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4377	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4378	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4379	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4380	else
4381	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4382	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4383	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4384	fi
4385
4386	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4387	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4388	file_saved=true
4389
4390	else
4391	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4392	archive_save=false
4393	fi
4394	if [[ $file_saved = true ]]
4395	then
4396	if [[ $files_for_pes = false ]]
4397	then
4398	cat /dev/null > ${pathout[$i]}
4399	else
4400	mkdir -p ${pathout[$i]}
4401	fi
4402	fi
4403	fi
4404
4405	# APPEND AUF LOKALER MASCHINE
4406	if [[ "${actionout[$i]}" = "a" ]]
4407	then
4408	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4409	then
4410	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4411	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4412	else
4413	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4414	cat ${localout[$i]} >> ${pathout[$i]}
4415	fi
4416	fi
4417
4418	# KOPIEREN AUF LOKALER MASCHINE
4419	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4420	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4421	then
4422
4423	# KOPIEREN AUF EINPROZESSORMASCHINE
4424	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4425	then
4426	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4427	if [[ $link_local_output = true ]]
4428	then
4429	printf " using ln -f\n"
4430	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4431	fi
4432	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4433	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4434	then
4435	if [[ $link_local_output = true ]]
4436	then
4437	printf " ln failed, using cp...\n"
4438	fi
4439	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4440	fi
4441	else
4442	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4443	if [[ $link_local_output = true ]]
4444	then
4445	printf " using ln -f\n"
4446	ln -f ${localout[$i]} ${pathout[$i]}
4447	fi
4448	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4449	if [[ ! -f "${pathout[$i]}" ]]
4450	then
4451	if [[ $link_local_output = true ]]
4452	then
4453	printf " ln failed, using cp...\n"
4454	fi
4455	cp ${localout[$i]} ${pathout[$i]}
4456	fi
4457	fi
4458
4459	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4460	then
4461
4462	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4463	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4464	# WIRD DANN KOPIERT
4465	# PER MOVE UMBENANNT WERDEN
4466	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4467	if [[ $link_local_output = true ]]
4468	then
4469	printf " using ln -f\n"
4470	mkdir ${pathout[$i]}
4471	cd ${localout[$i]}
4472	for file in $(ls *)
4473	do
4474	ln -f $file ${pathout[$i]}
4475	done
4476	cd $TEMPDIR
4477	fi
4478	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4479	if [[ ! -f "${pathout[$i]}/_0000" ]]
4480	then
4481	if [[ $link_local_output = true ]]
4482	then
4483	printf " ln failed for .../_0000, using cp...\n"
4484	fi
4485	cp -r ${localout[$i]} ${pathout[$i]}
4486	fi
4487
4488	fi
4489	fi
4490	done
4491	if (( i != 0 ))
4492	then
4493	if [[ $transfer_problems = true ]]
4494	then
4495	printf "\n$striche\n *** OUTPUT-files saved"
4496	printf "\n +++ WARNING: some data transfers failed! \n"
4497	else
4498	printf "\n$striche\n *** all OUTPUT-files saved \n"
4499	fi
4500	fi
4501
4502
4503	# EVENTUELL FOLGEJOB STARTEN
4504	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4505	if [[ -f CONTINUE_RUN ]]
4506	then
4507
4508	if [[ $archive_save = true ]]
4509	then
4510
4511	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4512	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4513	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4514	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4515	# HANDEN
4516	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4517	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4518	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4519	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4520	then
4521	mc=`echo $mc \| sed 's/#/f/g'`
4522	fi
4523
4524
4525	# JOB STARTEN
4526	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4527	echo " $mc"
4528	printf "\n$striche\n"
4529	if [[ $localhost != $fromhost ]]
4530	then
4531
4532	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4533	then
4534	echo "*** ssh will be used to initiate restart-runs!"
4535	echo " return_addres=\"$return_addres\" "
4536	echo " return_username=\"$return_username\" "
4537	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4538	then
4539	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4540	else
4541	if [[ $localhost = ibmkisti ]]
4542	then
4543	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4544	else
4545	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4546	fi
4547	fi
4548	else
4549	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4550	locat=restart; exit
4551	fi
4552
4553	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4554	# DER AKTUELLE JOB ENDET
4555	if [[ $queue = special1q ]]
4556	then
4557	sleep 120
4558	else
4559	sleep 30
4560	fi
4561
4562	else
4563
4564	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4565	# RUFEN WERDEN, AUSSER AUF lcfimm
4566	cd $LOCAL_PWD
4567	if [[ $localhost = lcfimm ]]
4568	then
4569	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4570	else
4571	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4572	fi
4573	cd - > /dev/null
4574	fi
4575	printf "\n$striche\n *** restart-run initiated \n"
4576
4577
4578	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4579	# GEHOLT WORDEN SIND, LOESCHEN
4580	(( i = 0 ))
4581	while (( i < iin ))
4582	do
4583	(( i = i + 1 ))
4584	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4585	then
4586	rm -r $tmp_data_catalog/${frelin[$i]}
4587	fi
4588	done
4589
4590	else
4591
4592	printf "\n +++ no restart-run possible, since errors occured"
4593	printf "\n during the archive process"
4594	fi
4595
4596	fi
4597
4598
4599
4600	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4601	if [[ "$email_notification" != "none" ]]
4602	then
4603
4604	if [[ $localhost != $fromhost ]]
4605	then
4606	if [[ -f CONTINUE_RUN ]]
4607	then
4608	echo "PALM restart run necessary" > email_text
4609	echo "description header of actual run:" >> email_text
4610	cat CONTINUE_RUN >> email_text
4611	echo "mrun-command to restart:" >> email_text
4612	echo "$mc" >> email_text
4613	else
4614	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4615	fi
4616	mail $email_notification < email_text
4617	printf "\n *** email notification sent to \"$email_notification\" "
4618	fi
4619	fi
4620
4621
4622
4623	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4624	cd $HOME
4625	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4626
4627	else
4628
4629
4630	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4631	# CHENDE AKTIONEN DURCHGEFUEHRT
4632
4633	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4634	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4635	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4636	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4637	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4638	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4639	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4640	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4641	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4642	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4643	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4644	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4645	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4646	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4647	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4648	if [[ $use_openmp = true ]]
4649	then
4650	mrun_com=${mrun_com}" -O $threads_per_task"
4651	fi
4652	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4653	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4654	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4655	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4656	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4657	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4658	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4659	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4660	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4661	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4662	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4663	if [[ $do_remote = true ]]
4664	then
4665	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4666	fi
4667
4668
4669	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4670	jobfile=jobfile.$RANDOM
4671
4672
4673	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4674	echo "mkdir $TEMPDIR" >> $jobfile
4675	echo "cd $TEMPDIR" >> $jobfile
4676
4677
4678	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4679	if [[ $do_trace = true ]]
4680	then
4681	echo "set -x" >> $jobfile
4682	else
4683	echo "set +vx" >> $jobfile
4684	fi
4685
4686
4687	# initialize the environment and load modules
4688	if [[ "$init_cmds" != "" ]]
4689	then
4690	echo "$init_cmds" >> $jobfile
4691	fi
4692	if [[ "$module_calls" != "" ]]
4693	then
4694	echo "$module_calls" >> $jobfile
4695	fi
4696
4697
4698	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4699	# DATEI FUER DEN JOB
4700	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4701	then
4702
4703	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4704	# KOPIEREN
4705	if [[ $restart_run != true ]]
4706	then
4707	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4708	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4709	fi
4710
4711	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4712	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4713	echo "set -x" >> $jobfile
4714	if [[ $host = $localhost ]]
4715	then
4716	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4717	else
4718	if [[ $host != ibmkisti ]]
4719	then
4720	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4721	else
4722	# on KISTI's IBM firewall is only opened on interactive node
4723	echo "localdir=\`pwd\`" >> $jobfile
4724	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4725	fi
4726	fi
4727	echo "export SOURCES_COMPLETE=true" >> $jobfile
4728
4729	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4730	# ARBEITSVERZEICHNIS VERSCHIEBEN
4731	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4732	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4733	echo "execute_mrun=true" >> $jobfile
4734	echo " " >> $jobfile
4735
4736	else
4737
4738	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4739	# SOWIE GEGEBENENFALLS DES MAKEFILES
4740	if [[ $do_compile = true ]]
4741	then
4742
4743	source_catalog=SOURCES_FOR_RUN_$fname
4744
4745	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4746	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4747	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4748	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4749	echo "export SOURCES_COMPLETE=true" >> $jobfile
4750	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4751
4752	for filename in $source_list
4753	do
4754	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4755	echo "cat > $filename << \"%END%\"" >> $jobfile
4756	cat $source_catalog/$filename >> $jobfile
4757	echo " " >> $jobfile
4758	echo "%END%" >> $jobfile
4759	echo " " >> $jobfile
4760	done
4761
4762	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4763	echo "cat > Makefile << \"%END%\"" >> $jobfile
4764	cat $source_catalog/Makefile >> $jobfile
4765	echo " " >> $jobfile
4766	echo "%END%" >> $jobfile
4767	echo " " >> $jobfile
4768
4769	echo "cd - > /dev/null" >> $jobfile
4770
4771	fi
4772
4773
4774	# ABSPEICHERN DER KONFIGURATIONSDATEI
4775	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4776	# Lines with #$ coming from the svn keyword substitution are
4777	# removed from the config file in order to avoid problems
4778	# with the SGE batch system
4779	echo "cat > $config_file << \"%END%\"" >> $jobfile
4780	sed 's/#$.*//g' $config_file >> $jobfile
4781	echo "%END%" >> $jobfile
4782	echo " " >> $jobfile
4783
4784
4785	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4786	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4787	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4788	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4789	echo "%END%" >> $jobfile
4790	echo "chmod u+x $mrun_script_name" >> $jobfile
4791	echo "execute_mrun=true" >> $jobfile
4792	echo " " >> $jobfile
4793
4794	fi
4795
4796
4797	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4798	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4799	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4800	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4801	if [[ $do_remote = true ]]
4802	then
4803	(( i = 0 ))
4804	while (( i < iin ))
4805	do
4806	(( i = i + 1 ))
4807	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4808	if [[ "${transin[$i]}" = job ]]
4809	then
4810	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4811	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4812	echo " " >> $jobfile
4813	echo "%END%" >> $jobfile
4814	else
4815	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4816	fi
4817
4818	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4819	echo "if [[ \$? = 1 ]]" >> $jobfile
4820	echo "then" >> $jobfile
4821	echo " echo \" \" " >> $jobfile
4822	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4823	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4824	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4825	echo " execute_mrun=false" >> $jobfile
4826	echo "fi" >> $jobfile
4827	done
4828	fi
4829
4830	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4831	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4832	echo "LOCAL_PWD=$working_directory" >> $jobfile
4833	echo "export LOCAL_PWD" >> $jobfile
4834
4835	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4836	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4837	echo "export LOCAL_MRUN_PATH" >> $jobfile
4838
4839	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4840	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4841	then
4842	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4843	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4844	then
4845	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4846	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4847	fi
4848
4849	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4850	echo "set -x" >> $jobfile
4851	echo "queue=$queue" >> $jobfile
4852	# echo "echo \"*** shell test\" " >> $jobfile
4853	# echo "which ksh" >> $jobfile
4854	# echo "ls -al /bin" >> $jobfile
4855	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4856
4857	echo 'ls -al; echo `pwd`' >> $jobfile
4858	echo "cd \$HOME" >> $jobfile
4859	echo "rm -rf $TEMPDIR" >> $jobfile
4860
4861
4862
4863
4864	# JOB PER SUBJOB STARTEN
4865	if [[ $silent = false ]]
4866	then
4867	printf "\n "
4868	else
4869	printf "\n\n"
4870	fi
4871
4872	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4873	rm -rf $jobfile
4874
4875
4876	fi # ENDE REMOTE-TEIL
4877
4878
4879
4880	# ENDE DER PROZEDUR

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