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source: palm/trunk/SCRIPTS/mrun @ 1080

Last change on this file since 1080 was 1070, checked in by maronga, 12 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# -----------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1070 2012-11-28 16:26:33Z maronga $
29	#
30	# 1069 2012-11-28 16:18:43Z maronga
31	# bugfix: coupling mode was always set to mpi2, typos removed
32	#
33	# 1058 2012-11-21 07:00:35Z raasch
34	# Intel inspector (inspxe) is given the number of PEs instead of the number of
35	# nodes
36	#
37	# 1046 2012-11-09 14:38:45Z maronga
38	# code put under GPL (PALM 3.9)
39	#
40	# 21/03/94 - Siggi - first version (1.0)
41	# 03/03/94 - Siggi - start with developing the script
42	#--------------------------------------------------------------------------------#
43
44
45
46	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
47
48	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
49	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
50	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
51
52	AddFilenames=""
53	additional_conditions=""
54	add_source_path=""
55	afname=""
56	archive_save=true
57	archive_system=none
58	check_namelist_files=true
59	combine_plot_fields=true
60	compiler_name=""
61	cond1=""
62	cond2=""
63	config_file=.mrun.config
64	coupled_dist=""
65	coupled_mode="mpi1"
66	cpp_opts=""
67	cpp_options=""
68	cpumax=0
69	cpurest=0
70	delete_temporary_catalog=true
71	do_batch=false
72	do_compile=true
73	do_remote=false
74	do_stagein=true
75	do_stageout=true
76	do_trace=false
77	email_notification="none"
78	exclude=""
79	executable=""
80	execution_error=false
81	fimm=false
82	fname=test
83	fromhost=""
84	global_revision=""
85	group_number=none
86	host=""
87	host_file=""
88	hp=""
89	ignore_archive_error=false
90	input_list=""
91	interpreted_config_file=""
92	job_catalog="~/job_queue"
93	job_on_file=""
94	keep_data_from_previous_run=false
95	link_local_input=false
96	link_local_output=false
97	localhost_realname=$(hostname)
98	local_compile=false
99	local_dvrserver_running=.FALSE.
100	locat=normal
101	mainprog=""
102	makefile=""
103	max_par_io_str=""
104	mc=$0
105	while [[ $(echo $mc \| grep -c "/") != 0 ]]
106	do
107	mc=`echo $mc \| cut -f2- -d"/"`
108	done
109	module_calls=""
110	mrun_script_name=$mc
111	netcdf_inc=""
112	netcdf_lib=""
113	netcdf_support=false
114	node_usage=default
115	numprocs=""
116	numprocs_atmos=0
117	numprocs_ocean=0
118	OOPT=""
119	openmp=false
120	output_list=""
121	package_list=""
122	punkte="..........................................................."
123	queue=none
124	read_from_config=""
125	restart_run=false
126	if [[ `hostname` = rte10 ]]
127	then
128	return_addres=133.5.185.60
129	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
130	elif [[ `hostname` = climate0 ]]
131	then
132	return_addres=165.132.26.68
133	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
134	elif [[ `hostname` = urban00 ]]
135	then
136	return_addres=147.46.30.151
137	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
138	else
139	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
140	fi
141	return_password=""
142	return_username=$LOGNAME
143	remotecall=false
144	remote_username=""
145	run_coupled_model=false
146	run_mode=""
147	scirocco=false
148	store_on_archive_system=false
149	striche=" ----------------------------------------------------------------------------"
150	silent=false
151	source_list=""
152	source_path=SOURCE
153	tasks_per_node=""
154	threads_per_task=1
155	tmpcreate=false
156	tmp_data_catalog=""
157	transfer_problems=false
158	usern=$LOGNAME
159	use_openmp=false
160	working_directory=`pwd`
161	TOPT=""
162	XOPT=""
163	zeit=$( date \| cut -c 12-19 )
164
165	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
166	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
167
168	typeset -R30 calltime
169	typeset -L20 spalte1
170	typeset -L40 spalte2
171	typeset -L60 spalte3
172	typeset -L35 string1=`date`
173	typeset -L12 string2=$usern
174	typeset -L12 string3=$localhost_realname
175	typeset -L12 string4
176	typeset -L12 string5
177	typeset -L30 version="MRUN 2.0 Rev$Rev: 1070 $"
178
179
180
181	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
182	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
183
184	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
185	# EXPORTIERT WERDEN
186	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
187	export group_number input_list memory numprocs output_list queue run_mode
188
189
190
191	# FEHLERBEHANDLUNG
192	# BEI EXIT:
193	trap 'rm -rf $working_directory/tmp_mrun
194	if [[ $locat != localhost ]]
195	then
196	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
197	# then
198	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
199	#MRUN-calls on $localhost
200	#
201	#date and time user localhost remotehost termination mrun-command
202	#--------------------------------------------------------------------------------------------------------------------
203	#%STATEND%
204	# chmod 666 ${mrun_path}/statistik/mrun_statistik
205	# fi
206	#
207	# # EINTRAG IN DIE STATISTIK-DATEI
208	# string4=$host
209	# string5=$locat
210	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
211	# then
212	# if [[ $do_batch = true ]]
213	# then
214	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
215	# else
216	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
217	# fi
218	# fi
219	echo " " > /dev/null
220	fi
221
222	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
223	then
224
225	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
226	(( i = 0 ))
227	while (( i < iec ))
228	do
229	(( i = i + 1 ))
230	printf "\n *** Execution of ERROR-command:\n"
231	printf " >>> ${err_command[$i]}\n"
232	eval ${err_command[$i]}
233	done
234	if [[ -n $interpreted_config_file ]] then
235	rm -rf $interpreted_config_file
236	fi
237	if [[ -n .mrun_environment ]] then
238	rm -rf .mrun_environment
239	fi
240	if [[ $tmpcreate = true ]]
241	then
242	printf "\n *** Contents of \"$TEMPDIR\":\n"
243	ls -al; cd
244	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
245	fi
246	if [[ "$dvrserver_id" != "" ]]
247	then
248	echo "+++ killing dvrserver_id=$dvrserver_id"
249	kill $dvrserver_id
250	fi
251	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
252	then
253	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
254	fi
255	printf "\n\n+++ MRUN killed \n\n"
256	elif [[ $locat != control_c ]]
257	then
258	printf "\n\n --> all actions finished\n\n"
259	printf " Bye, bye $usern !!\n\n"
260	fi' exit
261
262
263	# BEI TERMINAL-BREAK:
264	trap 'rm -rf $working_directory/tmp_mrun
265	rm -rf $working_directory/tmp_check_namelist_files
266	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
267	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
268	then
269	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
270	fi
271	if [[ "$dvrserver_id" != "" ]]
272	then
273	echo "+++ killing dvrserver_id=$dvrserver_id"
274	kill $dvrserver_id
275	fi
276	printf "\n+++ MRUN killed by \"^C\" \n\n"
277	locat=control_c
278	exit
279	' 2
280
281
282	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
283	# BEEN SET
284	if [[ "$PALM_BIN" = "" ]]
285	then
286	printf "\n +++ environment variable PALM_BIN has not been set"
287	printf "\n please set it to the directory where the PALM scripts are located"
288	locat=palm_bin; exit
289	fi
290	export PATH=$PALM_BIN:$PATH
291
292
293
294	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
295	# FUER FOLGEJOBS BENOETIGT WIRD
296	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
297	do
298	case $option in
299	(a) afname=$OPTARG;;
300	(A) store_on_archive_system=true; mc="$mc -A";;
301	(b) do_batch=true; mc="$mc -b";;
302	(B) delete_temporary_catalog=false; mc="$mc -B";;
303	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
304	(C) restart_run=true; mc="$mc -C";;
305	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
306	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
307	(F) job_on_file="-D"; mc="$mc -F";;
308	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
309	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
310	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
311	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
312	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
313	(I) ignore_archive_error=true; mc="$mc -I";;
314	(k) keep_data_from_previous_run=true; mc="$mc -k";;
315	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
316	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
317	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
318	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
319	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
320	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
321	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
322	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
323	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
324	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
325	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
326	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
327	(S) read_from_config=false; mc="$mc -S";;
328	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
329	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
330	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
331	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
332	(v) silent=true; mc="$mc -v";;
333	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
334	(x) do_trace=true;set -x; mc="$mc -x";;
335	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
336	(y) ocean_file_appendix=true; mc="$mc -y";;
337	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
338	(z) check_namelist_files=false; mc="$mc -z";;
339	(Z) combine_plot_fields=false; mc="$mc -Z";;
340	(\?) printf "\n +++ unknown option $OPTARG \n"
341	printf "\n --> type \"$0 ?\" for available options \n"
342	locat=parameter;exit;;
343	esac
344	done
345
346
347	# EVTL. POSITIONSPARAMETER EINLESEN
348	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
349	shift OPTIND-1
350
351
352	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
353	if [[ "$1" = "?" ]]
354	then
355	(printf "\n *** mrun can be called as follows:\n"
356	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
357	printf "\n Description of available options:\n"
358	printf "\n Option Description Default-Value"
359	printf "\n -a base name of input files equiv. -d"
360	printf "\n -A archiving when using file-attribute fl"
361	printf "\n -b batch-job on local machine ---"
362	printf "\n -B do not delete temporary directory at end ---"
363	printf "\n -c configuration file .mrun.config"
364	printf "\n -d base name of files attached to program test"
365	printf "\n -D preprocessor(cpp)-directives \"\" "
366	printf "\n -F create remote job file only ---"
367	printf "\n -h execution host $localhost_realname"
368	printf "\n -i INPUT control list \"\" "
369	printf "\n -I archiving errors of previous batch-jobs"
370	printf "\n will be ignored"
371	printf "\n -k keep data from previous run"
372	printf "\n -K additional conditions for controling"
373	printf "\n usage of conditional code and"
374	printf "\n env-variables in configuration file \"\" "
375	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
376	printf "\n -M Makefile name Makefile"
377	printf "\n -n node usage (shared/not_shared) depending on -h"
378	printf "\n -o OUTPUT control list \"\" "
379	printf "\n -O use OpenMP ---"
380	printf "\n -p software package list \"\" "
381	printf "\n -q queue \"$queue\" "
382	printf "\n -r run control list (combines -i -o) \"\" "
383	printf "\n -s filenames of routines to be compiled \"\" "
384	printf "\n must end with .f, .f90, .F, or .c !"
385	printf "\n use \"..\" for more than one file and wildcards"
386	printf "\n -s LM compiles all locally modified files"
387	printf "\n -S config file interpreted by shellscript ---"
388	printf "\n -t allowed cpu-time in seconds (batch) 0"
389	printf "\n -T tasks per node depending on -h"
390	printf "\n -u username on remote machine \"\" "
391	printf "\n -v no prompt for confirmation ---"
392	printf "\n -w maximum parallel io streams as given by -X"
393	printf "\n -x tracing of mrun for debug purposes ---"
394	printf "\n -X # of processors (on parallel machines) 1"
395	printf "\n -y add appendix \"_O\" to all local output"
396	printf "\n files (ocean precursor runs followed by"
397	printf "\n coupled atmosphere-ocean runs) ---"
398	printf "\n -Y run coupled model, \"#1 #2\" with"
399	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
400	printf "\n -z disable a priori parameter file check ---"
401	printf "\n -Z skip combine_plot_fields at the end of "
402	printf "\n the simulation ---"
403	printf "\n "
404	printf "\n Possible values of positional parameter <modus>:"
405	printf "\n \"?\" - this outline \n\n") \| more
406	exit
407	elif [[ "$1" != "" ]]
408	then
409	printf "\n +++ positional parameter $1 unknown \n"
410	locat=parameter; exit
411	fi
412
413
414
415	# KURZE STARTMELDUNG
416	printf "\n*** $version "
417	printf "\n will be executed. Please wait ..."
418
419
420
421	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
422	if [[ ! -f $config_file ]]
423	then
424	printf "\n\n +++ configuration file: "
425	printf "\n $config_file"
426	printf "\n does not exist"
427	locat=connect; exit
428	fi
429
430
431	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
432	line=""
433	grep "%host_identifier" $config_file > tmp_mrun
434	while read line
435	do
436	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
437	then
438	HOSTNAME=`echo $line \| cut -d" " -s -f2`
439	host_identifier=`echo $line \| cut -d" " -s -f3`
440	if [[ $localhost_realname = $HOSTNAME ]]
441	then
442	localhost=$host_identifier
443	break
444	fi
445	fi
446	done < tmp_mrun
447
448	if [[ "$localhost" = "" ]]
449	then
450	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
451	printf "\n for local host \"$localhost_realname\"."
452	printf "\n Please add line"
453	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
454	printf "\n to the configuration file."
455	locat=localhost; exit
456	fi
457
458
459	# HOSTSPEZIFISCHE VARIABLEN SETZEN
460	case $localhost_realname in
461	(r1\|r2\|h01\|b01) archive_system=tivoli;;
462	(cs*) archive_system=ut;;
463	(fimm.bccs.uib.no) fimm=true;;
464	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
465	(scirocco) scirocco=true;;
466	esac
467
468
469
470	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
471	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
472	[[ "$afname" = "" ]] && afname=$fname
473
474
475	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
476	if [[ "$run_mode" != "" ]]
477	then
478	input_list="$input_list $run_mode"
479	output_list="$output_list $run_mode"
480	fi
481
482
483	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
484	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
485	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
486	# STARTET)
487	if [[ "$fromhost" = "" ]]
488	then
489	fromhost=$localhost
490	fi
491
492
493	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
494	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
495	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
496	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
497	if [[ -n $host && "$host" != $localhost ]]
498	then
499	do_batch=true
500	do_remote=true
501	case $host in
502	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
503	(*) printf "\n"
504	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
505	printf "\n is not available"
506	locat=nqs; (( iec = 0 )); exit;;
507	esac
508	else
509	host=$localhost
510	fi
511
512
513	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
514	if [[ -n $additional_conditions ]]
515	then
516	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
517	cond1=`echo $additional_conditions \| cut -d" " -f1`
518	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
519	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
520	if [[ -n $dummy ]]
521	then
522	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
523	locat=options; exit
524	fi
525	block=_$cond1
526	[[ -n $cond2 ]] && block=${block}_$cond2
527	fi
528
529
530	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
531	if [[ $run_coupled_model = true ]]
532	then
533
534	if [[ -n $coupled_dist ]]
535	then
536
537	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
538	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
539
540	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
541	then
542
543	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
544	printf "\n PEs (total) : $numprocs"
545	printf "\n PEs (atmosphere): $numprocs_atmos"
546	printf "\n PEs (ocean) : $numprocs_ocean"
547	locat=coupling; exit
548
549	fi
550
551	else
552
553	(( numprocs_ocean = $numprocs / 2 ))
554	(( numprocs_atmos = $numprocs / 2 ))
555
556	fi
557	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
558
559	# GET coupled_mode FROM THE CONFIG FILE
560	line=""
561	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
562	while read line
563	do
564	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
565	then
566	coupled_mode="mpi2"
567	fi
568	done < tmp_mrun
569
570	fi
571
572
573	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
574	# ARCHIVIERUNG FEHLGESCHLAGEN IST
575	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
576	then
577	if [[ $ignore_archive_error = false ]]
578	then
579	printf "\n +++ data archiving of previous run failed"
580	printf "\n see directory \~/job_queue on remote machine"
581	locat=archive; exit
582	else
583	printf "\n +++ warning: data archiving in a previous run failed"
584	printf "\n MRUN continues, trying to get backup copy"
585	fi
586	fi
587
588
589
590	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
591	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
592	if [[ "$read_from_config" = false ]]
593	then
594
595	[[ $silent = false ]] && printf "\n Reading the configuration file... "
596	while read zeile
597	do
598	[[ $silent = false ]] && printf "."
599
600
601	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
602	# ERSETZEN
603	eval zeile=\"$zeile\"
604
605
606	# INTERPRETATION DER ZEILE
607	if [[ "$(echo $zeile)" = "" ]]
608	then
609	# LEERZEILE, KEINE AKTION
610	continue
611
612	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
613	then
614
615	# ZEILE IST KOMMENTARZEILE
616	true
617
618	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
619	then
620
621	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
622	zeile=$(echo $zeile \| cut -c2-)
623	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
624	var=`echo $zeile \| cut -d" " -f1`
625	value=`echo $zeile \| cut -d" " -s -f2`
626	for_host=`echo $zeile \| cut -d" " -s -f3`
627	for_cond1=`echo $zeile \| cut -d" " -s -f4`
628	for_cond2=`echo $zeile \| cut -d" " -s -f5`
629
630	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
631	then
632
633	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
634	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
635	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
636
637
638	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
639	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
640	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
641	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
642	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
643	# KONFIGURATIONSDATEI
644	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
645	then
646	eval $var=\$value
647
648	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
649	if [[ $do_trace = true ]]
650	then
651	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
652	fi
653	fi
654
655	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
656	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
657	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
658	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
659	if [[ $var = host ]]
660	then
661	if [[ -n $host && "$host" != $localhost ]]
662	then
663	do_batch=true
664	do_remote=true
665	case $host in
666	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
667	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
668	printf "\n is not available"
669	locat=nqs; exit;;
670	esac
671	else
672	host=$localhost
673	fi
674	fi
675
676	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
677	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
678	# DEN PROGRAMMEN BENOETIGT WERDEN
679	export $var
680	fi
681
682
683
684
685	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
686	then
687
688	# ZEILE DEFINIERT ERROR-KOMMANDO
689	(( iec = iec + 1 ))
690	zeile=$(echo $zeile \| cut -c4-)
691	err_command[$iec]="$zeile"
692
693	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
694	then
695
696	# ZEILE DEFINIERT INPUT-KOMMANDO
697	(( iic = iic + 1 ))
698	zeile=$(echo $zeile \| cut -c4-)
699	in_command[$iic]="$zeile"
700
701	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
702	then
703
704	# ZEILE DEFINIERT OUTPUT-KOMMANDO
705	(( ioc = ioc + 1 ))
706	zeile=$(echo $zeile \| cut -c4-)
707	out_command[$ioc]="$zeile"
708
709	else
710
711	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
712	# s2a: in/out - Feld
713	# s2b: loc - Feld (optional)
714	# s2c: tr/ar - Feld (optional)
715	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
716	s1=`echo $zeile \| cut -d" " -f1`
717	s2=`echo $zeile \| cut -d" " -s -f2`
718	s2a=$(echo $s2 \| cut -d":" -f1)
719	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
720	then
721	s2b=""
722	s2c=""
723	else
724	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
725	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
726	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
727	fi
728	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
729	s3=`echo $zeile \| cut -d" " -f3`
730	s4=`echo $zeile \| cut -d" " -s -f4`
731	s5=`echo $zeile \| cut -d" " -s -f5`
732	s6=`echo $zeile \| cut -d" " -s -f6`
733
734
735	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
736	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
737	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
738	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
739	# HANDEN SEIN MUSS (D.H. s2b = loc)
740	IFSALT="$IFS"; IFS="$IFS:"
741	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
742	then
743	found=false
744	for actual in $input_list
745	do
746	for formal in $s3
747	do
748	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
749	done
750	done
751	if [[ $found = true ]]
752	then
753	(( iin = iin + 1 ))
754	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
755	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
756	extin[$iin]=$s6
757	fi
758	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
759	then
760	found=false
761	for actual in $output_list
762	do
763	for formal in $s3
764	do
765	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
766	done
767	done
768	if [[ $found = true ]]
769	then
770	(( iout = iout + 1 ))
771	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
772	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
773	fi
774	elif [[ "$s2a" != in && "$s2a" != out ]]
775	then
776	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
777	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
778	locat=connect; exit
779	fi
780	IFS="$IFSALT"
781	fi
782	done < $config_file
783
784	else
785
786
787	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
788	[[ $silent = false ]] && printf "..."
789	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
790	export interpreted_config_file=.icf.$RANDOM
791
792
793
794	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
795	# VERFUEGUNG STELLEN
796	cat > .mrun_environment << %%END%%
797	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
798	config_file = '$config_file', do_remote = '$do_remote',
799	do_trace = '$do_trace', host = '$host',
800	input_list = '$input_list', icf = '$interpreted_config_file',
801	localhost = '$localhost', output_list = '$output_list' /
802
803	%%END%%
804
805	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
806	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
807	mrun_memory=$memory
808	mrun_group_number=$group_number
809	mrun_cpumax=$cpumax
810	mrun_numprocs=$numprocs
811
812	if [[ $localhost_realname = "sx-fep" ]]
813	then
814	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
815	else
816
817	if [[ "$host" != $localhost ]]
818	then
819
820	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
821	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
822	if [[ $? != 0 ]]
823	then
824	printf "\n\n +++ no interpret_config found"
825	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
826	locat=interpret_config; exit
827	fi
828	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
829	$interpret_config_executable
830
831	else
832
833	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
834	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
835	then
836	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
837	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
838	locat=interpret_config; exit
839	else
840	interpret_config${block}.x
841	fi
842
843	fi
844	fi
845	rm .mrun_environment
846
847
848	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
849	chmod u+x $interpreted_config_file
850	export PATH=$PATH:.
851	. $interpreted_config_file
852	rm $interpreted_config_file
853
854
855	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
856	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
857	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
858	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
859	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
860	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
861	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
862
863	fi
864
865
866	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
867	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
868	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
869	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
870	if [[ "$SOURCES_COMPLETE" = "" ]]
871	then
872
873	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
874	# VEREINBART WURDE
875	source_path=""
876	line=""
877	grep "%source_path" $config_file > tmp_mrun
878	while read line
879	do
880	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
881	then
882	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
883	then
884	global_source_path=`echo $line \| cut -d" " -f2`
885	fi
886	fi
887	done < tmp_mrun
888
889	line=""
890	found=false
891	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
892	while read line
893	do
894	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
895	then
896	if [[ $found = true ]]
897	then
898	printf "\n\n +++ more than one source path found in configuration file"
899	printf "\n for local host \"$localhost\" "
900	locat=source_path; exit
901	fi
902	source_path=`echo $line \| cut -d" " -f2`
903	found=true
904	fi
905	done < tmp_mrun
906	rm tmp_mrun
907
908	if [[ "$source_path" = "" ]]
909	then
910	if [[ "$global_source_path" != "" ]]
911	then
912	source_path=$global_source_path
913	else
914	printf "\n\n +++ no source path found in configuration file"
915	printf "\n for local host \"$localhost\" "
916	locat=source_path; exit
917	fi
918	fi
919	eval source_path=$source_path
920
921	if [[ ! -d $source_path ]]
922	then
923	printf "\n\n +++ source path \"$source_path\" on local host"
924	printf "\n \"$localhost\" does not exist"
925	locat=source_path; exit
926	fi
927
928	fi
929
930
931	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
932	# DURCH OPTION -G MITGETEILT)
933	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
934	then
935	global_revision=`svnversion $source_path 2>/dev/null`
936	global_revision="Rev: $global_revision"
937	fi
938
939
940	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
941	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
942	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
943	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
944	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
945	if [[ -n $host && "$host" != $localhost ]]
946	then
947	do_batch=true
948	do_remote=true
949	case $host in
950	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
951	(*) printf "\n"
952	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
953	printf "\n is not available"
954	locat=nqs; (( iec = 0 )); exit;;
955	esac
956	else
957	host=$localhost
958	fi
959
960
961	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
962	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
963	then
964
965	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
966	if [[ ! -n $numprocs ]]
967	then
968	printf "\n"
969	printf "\n +++ option \"-K parallel\" requires additional specification"
970	printf "\n of the number of processors to be used by"
971	printf "\n mrun-option \"-X\" or by environment-variable"
972	printf "\n \"numprocs\" in the configuration file"
973	locat=numprocs; (( iec = 0 )); exit
974	fi
975
976	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
977	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
978	# GESAMTPROZESSORANZAHL IST
979	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
980	then
981	printf "\n"
982	printf "\n +++ option \"-T\" (tasks per node) is missing"
983	printf "\n set -T option or define tasks_per_node in the config file"
984	locat=tasks_per_node; (( iec = 0 )); exit
985	fi
986	if [[ $host != lcflow && $host != lcxt5m ]]
987	then
988	(( ival = $tasks_per_node ))
989	(( pes = numprocs ))
990	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
991	# then
992	# (( pes = pes - 1 ))
993	# fi
994	(( ii = pes / ival ))
995	if (( pes - ii * ival > 0 ))
996	then
997	printf "\n"
998	printf "\n +++ tasks per node (option \"-T\") must be an integral"
999	printf "\n divisor of the total number of processors (option \"-X\")"
1000	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1001	locat=tasks_per_node; (( iec = 0 )); exit
1002	fi
1003	fi
1004
1005
1006	# IBMY HAT NUR EINEN KNOTEN
1007	if [[ $host = ibmy ]]
1008	then
1009	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1010	then
1011	printf "\n"
1012	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1013	printf "\n total number of processors (option \"-X\")"
1014	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1015	locat=tasks_per_node; (( iec = 0 )); exit
1016	fi
1017	fi
1018
1019
1020	# SETTINGS FOR SUBJOB-COMMAND
1021	TOPT="-T $tasks_per_node"
1022	OOPT="-O $threads_per_task"
1023
1024	# GESAMTZAHL DER KNOTEN BESTIMMEN
1025	if [[ "$tasks_per_node" != "" ]]
1026	then
1027	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1028	fi
1029
1030	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1031	# SETZEN
1032	if [[ $node_usage = default ]]
1033	then
1034	if [[ $host = ibms ]]
1035	then
1036	node_usage=shared
1037	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1038	then
1039	node_usage=singlejob
1040	else
1041	node_usage=not_shared
1042	fi
1043	fi
1044
1045	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1046	then
1047	printf "\n"
1048	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1049	printf "\n \"shared\" or \"not_shared\""
1050	locat=tasks_per_node; (( iec = 0 )); exit
1051	fi
1052
1053	fi
1054
1055	# PRUEFEN, OB HOSTFILE EXISTIERT
1056	if [[ -n $hostfile ]]
1057	then
1058	if [[ ! -f $hostfile ]]
1059	then
1060	printf "\n"
1061	printf "\n +++ hostfile \"$hostfile\" does not exist"
1062	locat=hostfile; exit
1063	fi
1064	fi
1065
1066	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1067	if [[ $host = ibmy && $do_remote = false ]]
1068	then
1069	if [[ ! -f $HOME/.rhosts ]]
1070	then
1071	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1072	printf "\n\n *** file:"
1073	printf "\n $HOME/.rhosts"
1074	printf "\n was created\n"
1075	fi
1076	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1077	then
1078	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1079	printf "\n\n *** file:"
1080	printf "\n $HOME/.rhosts"
1081	printf "\n was extended by the name of the current host\n"
1082	fi
1083	fi
1084
1085
1086	# Set default value for the maximum number of parallel io streams
1087	if [[ "$maximum_parallel_io_streams" = "" ]]
1088	then
1089	maximum_parallel_io_streams=$numprocs
1090	fi
1091
1092
1093	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1094	if [[ $queue = none ]]
1095	then
1096	case $host in
1097	(ibmh) queue=no_class;;
1098	(ibmkisti) queue=class.32plus;;
1099	(ibmy) queue=parallel;;
1100	(lckiaps) queue=normal;;
1101	(lckyoto) queue=ph;;
1102	(lcsgib) queue=testq;;
1103	(lcsgih) queue=testq;;
1104	(lctit) queue=S;;
1105	(nech) queue=none;;
1106	(necriam) queue=SP;;
1107	(unics) queue=unics;;
1108	esac
1109	fi
1110
1111
1112	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1113	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1114	# ERMITTELN
1115	(( i = 0 ))
1116	while (( i < iin ))
1117	do
1118	(( i = i + 1 ))
1119	(( maxcycle = 0 ))
1120
1121	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1122	if [[ "${actionin[$i]}" = di ]]
1123	then
1124	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1125	# REM-MASCHINE AUSWERTEN
1126	eval filename=${pathin[$i]}/${endin[$i]}
1127	else
1128	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1129	# REM-MASCHINE AUSWERTEN
1130	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1131	fi
1132	eval pathname=${pathin[$i]}
1133
1134	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1135	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1136	then
1137	filename_input=$filename
1138	fi
1139
1140	# PRUEFEN AUF VORHANDENSEIN
1141	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1142	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1143	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1144	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1145	then
1146	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1147	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1148	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1149	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1150	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1151	if [[ "${transin[$i]}" != "locopt" ]]
1152	then
1153	printf "\n\n +++ INPUT-file: "
1154	if [[ "${extin[$i]}" = "" ]]
1155	then
1156	printf "\n $filename"
1157	else
1158	printf "\n $filename.${extin[$i]}"
1159	fi
1160	printf "\n does not exist\n"
1161	locat=input; exit
1162	else
1163	transin[$i]="unavailable"
1164	fi
1165	else
1166
1167	# ZYKLUSNUMMER FESTSTELLEN
1168	ls -1 -d $filename > filelist 2>/dev/null
1169	ls -1 -d $filename.* >> filelist 2>/dev/null
1170	while read zeile
1171	do
1172	cycle=$(print $zeile \| cut -f2 -d".")
1173	if [[ "$cycle" = "$zeile" ]]
1174	then
1175	(( icycle = 0 ))
1176	elif [[ "$cycle" = "${extin[$i]}" ]]
1177	then
1178	(( icycle = 0 ))
1179	else
1180	(( icycle = $cycle ))
1181	fi
1182	if (( icycle > maxcycle ))
1183	then
1184	(( maxcycle = icycle ))
1185	file_to_be_used=$zeile
1186	fi
1187	done <filelist
1188	rm filelist
1189
1190	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1191	if (( maxcycle > 0 ))
1192	then
1193	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1194	then
1195	filename=${filename}.$maxcycle.${extin[$i]}
1196	else
1197	filename=${filename}.$maxcycle
1198	fi
1199	else
1200	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1201	then
1202	filename=${filename}.${extin[$i]}
1203	fi
1204	fi
1205
1206	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1207	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1208	absnamein[$i]=$filename
1209	if (( maxcycle > 0 ))
1210	then
1211	if [[ "${actionin[$i]}" = di ]]
1212	then
1213	frelin[$i]=${endin[$i]}.$maxcycle
1214	else
1215	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1216	fi
1217	else
1218	if [[ "${actionin[$i]}" = di ]]
1219	then
1220	frelin[$i]=${endin[$i]}
1221	else
1222	frelin[$i]=${afname}${endin[$i]}
1223	fi
1224	fi
1225
1226	fi
1227	done
1228
1229	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1230	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1231	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1232	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1233	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1234	(( i = 0 ))
1235	while (( i < iout ))
1236	do
1237	(( i = i + 1 ))
1238	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1239	then
1240	if [[ "${actionout[$i]}" = tr ]]
1241	then
1242	actionout[$i]=""
1243	elif [[ "${actionout[$i]}" = trpe ]]
1244	then
1245	actionout[$i]=pe
1246	elif [[ "${actionout[$i]}" = tra ]]
1247	then
1248	actionout[$i]=a
1249	fi
1250	(( maxcycle = 0 ))
1251	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1252	eval catalogname=${pathout[$i]}
1253	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1254	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1255	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1256	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1257	then
1258
1259	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1260	if cat /dev/null > $filename
1261	then
1262	rm $filename
1263	else
1264
1265	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1266	if [[ ! -d $catalogname ]]
1267	then
1268	if mkdir -p $catalogname
1269	then
1270	printf "\n\n *** directory:"
1271	printf "\n $catalogname"
1272	printf "\n was created\n"
1273	else
1274	printf "\n\n +++ OUTPUT-file:"
1275	printf "\n $filename"
1276	printf "\n cannot be created, because directory does not exist"
1277	printf "\n and cannot be created either"
1278	printf "\n"
1279	locat=output ; exit
1280	fi 2>/dev/null
1281	else
1282	printf "\n\n +++ OUTPUT-file:"
1283	printf "\n $filename"
1284	printf "\n cannot be created, although directory exists"
1285	printf "\n"
1286	locat=output ; exit
1287	fi
1288	fi 2>/dev/null
1289	else
1290
1291	# ZYKLUSNUMMER FESTSTELLEN
1292	ls -1 -d $filename > filelist 2>/dev/null
1293	ls -1 -d $filename.* >> filelist 2>/dev/null
1294	while read zeile
1295	do
1296	cycle=$(print $zeile \| cut -f2 -d".")
1297	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1298	then
1299	(( icycle = 1 ))
1300	else
1301	(( icycle = $cycle + 1 ))
1302	fi
1303	if (( icycle > maxcycle ))
1304	then
1305	(( maxcycle = icycle ))
1306	fi
1307	done <filelist
1308	rm filelist
1309	fi
1310
1311	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1312	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1313	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1314	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1315	if [[ "${actionout[$i]}" != a ]]
1316	then
1317	if (( maxcycle > 0 ))
1318	then
1319	filename=${filename}.$maxcycle
1320	if cat /dev/null > $filename
1321	then
1322	rm $filename
1323	else
1324	printf "\n +++ OUTPUT-file:"
1325	printf "\n $filename"
1326	printf "\n cannot be created"
1327	locat=output ; exit
1328	fi
1329	fi
1330	else
1331	(( maxcycle = maxcycle - 1 ))
1332	if (( maxcycle > 0 ))
1333	then
1334	filename=${filename}.$maxcycle
1335	fi
1336	fi
1337
1338	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1339	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1340	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1341	pathout[$i]=$filename
1342	if (( maxcycle > 0 ))
1343	then
1344	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1345	else
1346	frelout[$i]=${fname}${endout[$i]}
1347	fi
1348
1349	fi
1350	done
1351
1352
1353	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1354	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1355	then
1356	if [[ "$dvr_inc" = "" ]]
1357	then
1358	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1359	printf "\n This is required for the dvrp_graphics package.\n"
1360	locat=dvr; exit
1361	fi
1362	if [[ "$dvr_lib" = "" ]]
1363	then
1364	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1365	printf "\n This is required for the dvrp_graphics package.\n"
1366	locat=dvr; exit
1367	fi
1368	fi
1369
1370
1371	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1372	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1373	# UEBERSETZT ZU WERDEN)
1374	if [[ "$mainprog" = "" && "$executable" = "" ]]
1375	then
1376	printf "\n +++ neither main program nor executable defined"
1377	locat=source; exit
1378	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1379	then
1380	printf "\n +++ main program as well as executable defined"
1381	locat=source; exit
1382	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1383	then
1384	do_compile=false
1385	fi
1386
1387
1388	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1389	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1390	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1391	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1392	then
1393	rm -rf SOURCES_FOR_RUN_$fname
1394	mkdir SOURCES_FOR_RUN_$fname
1395	fi
1396
1397
1398	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1399	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1400	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1401	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1402	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1403	then
1404
1405	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1406
1407	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1408	then
1409
1410	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1411	source_list=""
1412	cd $source_path
1413
1414
1415	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1416	if [[ ! -d .svn ]]
1417	then
1418	printf "\n\n +++ source directory"
1419	printf "\n \"$source_path\" "
1420	printf "\n is not under control of \"subversion\"."
1421	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1422	fi
1423
1424
1425	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1426	Filenames=""
1427	svn status > tmp_mrun
1428	while read line
1429	do
1430	firstc=`echo $line \| cut -c1`
1431	if [[ $firstc = M \|\| $firstc = "?" ]]
1432	then
1433	Name=`echo "$line" \| cut -c8-`
1434	extension=`echo $Name \| cut -d. -f2`
1435	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1436	then
1437	Filenames="$Filenames "$Name
1438	fi
1439	fi
1440	done < tmp_mrun
1441
1442
1443	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1444	for dateiname in $Filenames
1445	do
1446	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1447	source_list=$source_list"$dateiname "
1448	done
1449
1450	cd - > /dev/null
1451
1452
1453	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1454	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1455	# VORHANDEN
1456	elif [[ "$source_list" != "" && $restart_run != true ]]
1457	then
1458
1459	cd $source_path
1460
1461	for filename in $source_list
1462	do
1463
1464	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1465	if [[ $(print $filename \| grep -c "/") != 0 ]]
1466	then
1467	printf "\n +++ source code file: $filename"
1468	printf "\n must not contain (\"/\") "
1469	locat=source; exit
1470	fi
1471
1472	if [[ ! -f $filename ]]
1473	then
1474	printf "\n +++ source code file: $filename"
1475	printf "\n does not exist"
1476	locat=source; exit
1477	else
1478	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1479	fi
1480
1481	done
1482
1483	cd - > /dev/null
1484
1485	fi
1486
1487
1488	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1489	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1490	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1491	if [[ $restart_run != true ]]
1492	then
1493
1494	if [[ ! -f "$source_path/$mainprog" ]]
1495	then
1496	printf "\n\n +++ main program: $mainprog"
1497	printf "\n does not exist in source directory"
1498	printf "\n \"$source_path\"\n"
1499	locat=source; exit
1500	else
1501	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1502	then
1503	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1504	source_list=${mainprog}" $source_list"
1505	fi
1506	fi
1507	fi
1508
1509
1510	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1511	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1512	if [[ "$restart_run" != true ]]
1513	then
1514	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1515	if [[ ! -f $makefile ]]
1516	then
1517	printf "\n +++ file \"$makefile\" does not exist"
1518	locat=make; exit
1519	else
1520	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1521	fi
1522	fi
1523
1524
1525	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1526	if [[ $restart_run != true && "$add_source_path" != "" ]]
1527	then
1528
1529	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1530	if [[ ! -d $add_source_path ]]
1531	then
1532	printf "\n\n +++ WARNING: additional source code directory"
1533	printf "\n \"$add_source_path\" "
1534	printf "\n does not exist or is not a directory."
1535	printf "\n No source code will be used from this directory!\n"
1536	add_source_path=""
1537	if [[ $silent == false ]]
1538	then
1539	sleep 3
1540	fi
1541	else
1542
1543	cd $add_source_path
1544	found=false
1545
1546	Names=$(ls -1 *.f90 2>&1)
1547	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1548	Names=$(ls -1 *.F90 2>&1)
1549	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1550	Names=$(ls -1 *.F 2>&1)
1551	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1552	Names=$(ls -1 *.f 2>&1)
1553	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1554	Names=$(ls -1 *.c 2>&1)
1555	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1556
1557	cd - > /dev/null
1558	cd SOURCES_FOR_RUN_$fname
1559
1560	# COPY MAKEFILE IF EXISTING
1561	if [[ -f $add_source_path/Makefile ]]
1562	then
1563	printf "\n\n *** user Makefile from directory"
1564	printf "\n \"$add_source_path\" is used \n"
1565	if [[ $silent == false ]]
1566	then
1567	sleep 1
1568	fi
1569	cp $add_source_path/Makefile .
1570	fi
1571
1572	for dateiname in $AddFilenames
1573	do
1574	if [[ -f $dateiname ]]
1575	then
1576	printf "\n +++ source code file \"$dateiname\" found in additional"
1577	printf "\n source code directory \"$add_source_path\" "
1578	printf "\n but was also given with option \"-s\" which means that it should be taken"
1579	printf "\n from directory \"$source_path\"."
1580	locat=source; exit
1581	fi
1582
1583	cp $add_source_path/$dateiname .
1584	source_list="$source_list $dateiname"
1585
1586	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1587	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1588	then
1589	printf "\n\n +++ user file \"$dateiname\" "
1590	printf "\n is not listed in Makefile \n"
1591	locat=source; exit
1592	else
1593
1594	# Default User-Interface von der Liste entfernen, falls Datei
1595	# ein User-Interface enthaelt
1596	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1597	# then
1598	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1599	# then
1600	# rm -rf user_interface.f90
1601	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1602	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1603	# printf "\n since a user-interface is found in file"
1604	# printf "\n \"$add_source_path/$dateiname\" \n"
1605	# sleep 3
1606	# else
1607	if [[ $found = false ]]
1608	then
1609	found=true
1610	printf "\n\n *** following user file(s) added to the"
1611	printf " files to be translated:\n "
1612	fi
1613	printf "$dateiname "
1614	if [[ $silent == false ]]
1615	then
1616	sleep 0.5
1617	fi
1618
1619	fi
1620	done
1621	[[ $found = true ]] && printf "\n"
1622	cd - > /dev/null
1623	fi
1624	fi
1625
1626
1627	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1628	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1629	if [[ $restart_run != true && -n $package_list ]]
1630	then
1631
1632	cd $source_path
1633
1634	for package in $package_list
1635	do
1636
1637	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1638
1639	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1640	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1641	# LIEFERT
1642	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1643
1644
1645	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1646	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1647	for source_list_name in $package_source_list
1648	do
1649	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1650	then
1651
1652	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1653	ending=`echo $source_list_name \| cut -f2 -d.`
1654	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1655	then
1656	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1657	source_list="$source_list $source_list_name"
1658	fi
1659	fi
1660	done
1661	done
1662
1663	cd - > /dev/null
1664	fi
1665
1666
1667	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1668	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1669	# if [[ "$restart_run" != true ]]
1670	# then
1671	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1672	# if [[ ! -f $makefile ]]
1673	# then
1674	# printf "\n +++ file \"$makefile\" does not exist"
1675	# locat=make; exit
1676	# else
1677	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1678	# fi
1679	# fi
1680
1681	fi # do_compile=true
1682
1683
1684	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1685	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1686	if [[ $do_compile = true ]]
1687	then
1688
1689	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1690	# ZUSAMMENSETZEN
1691	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1692	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1693	then
1694	cpp_options="${cpp_options},-D__ibm=__ibm"
1695	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1696	then
1697	cpp_options="$cpp_options -D__nec"
1698	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1699	then
1700	cpp_options="$cpp_options -D__lc"
1701	else
1702	cpp_options="$cpp_options -D__$localhost"
1703	fi
1704
1705	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1706	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1707	then
1708	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1709	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1710	else
1711	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1712	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1713	fi
1714
1715	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1716	if [[ -n $package_list ]]
1717	then
1718	for package in $package_list
1719	do
1720	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1721	then
1722	if [[ $package != "dvrp_graphics+1PE" ]]
1723	then
1724	cpp_options="${cpp_options},-D__$package=__$package"
1725	else
1726	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1727	export use_seperate_pe_for_dvrp_output=true
1728	fi
1729	else
1730	if [[ $package != "dvrp_graphics+1PE" ]]
1731	then
1732	cpp_options="$cpp_options -D__$package"
1733	else
1734	cpp_options="$cpp_options -D__dvrp_graphics"
1735	export use_seperate_pe_for_dvrp_output=true
1736	fi
1737	fi
1738	done
1739	fi
1740
1741	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1742	if [[ -n $cpp_opts ]]
1743	then
1744	for popts in $cpp_opts
1745	do
1746	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1747	then
1748	cpp_options="${cpp_options},-D__$popts=__$popts"
1749	else
1750	cpp_options="$cpp_options -D__$popts"
1751	fi
1752	done
1753	fi
1754
1755	else
1756
1757
1758	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1759	if [[ $do_remote = false ]]
1760	then
1761	if [[ ! -f $executable ]]
1762	then
1763	printf "\n +++ executable file: $executable"
1764	printf "\n does not exist"
1765	locat=executable; exit
1766	fi
1767	fi
1768	fi
1769
1770
1771	# JOBMODUS FESTSTELLEN
1772	if [[ "$ENVIRONMENT" = BATCH ]]
1773	then
1774	jobmo=BATCH
1775	else
1776	jobmo=INTERACTIVE
1777	fi
1778
1779
1780	# no interactive runs on lctit
1781	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1782	then
1783	printf "\n +++ no interactive runs allowed on host \"$host\" "
1784	printf "\n please submit batch job using mrun option \"-b\" \n"
1785	locat=normal; exit
1786	fi
1787
1788
1789	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1790	# DURCH BENUTZER ANDERWEITIG VEREINBART
1791	if [[ "$compiler_name" = "" ]]
1792	then
1793
1794	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1795	locat=compiler_name; exit
1796
1797	fi
1798
1799
1800	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1801	[[ $localhost = necriam ]] && compiler_name=mpif90
1802
1803
1804
1805	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1806	kennung=$RANDOM
1807	if [[ "$tmp_user_catalog" = "" ]]
1808	then
1809	if [[ $localhost = ibmh ]]
1810	then
1811	tmp_user_catalog=$SCRATCH
1812	elif [[ $localhost = nech ]]
1813	then
1814	tmp_user_catalog=$WRKSHR
1815	else
1816	tmp_user_catalog=/tmp
1817	fi
1818	fi
1819	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1820
1821
1822	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1823	# BESTIMMEN
1824	if [[ "$tmp_data_catalog" = "" ]]
1825	then
1826	if [[ $localhost = nech ]]
1827	then
1828	tmp_data_catalog=$WRKSHR/mrun_restart_data
1829	else
1830	tmp_data_catalog=/tmp/mrun_restart_data
1831	fi
1832	fi
1833
1834
1835	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1836	# ERSETZEN
1837	if [[ $do_remote = false && $do_compile = true ]]
1838	then
1839	eval fopts=\"$fopts\"
1840	eval lopts=\"$lopts\"
1841	fi
1842
1843
1844
1845	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1846	fopts="$fopts $netcdf_inc $dvr_inc"
1847	lopts="$lopts $netcdf_lib $dvr_lib"
1848	ROPTS="$ropts"
1849	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
1850	then
1851	XOPT="-X $numprocs"
1852	fi
1853
1854
1855
1856	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1857	# GRAMM BENOETIGT
1858	done=false
1859	while [[ $done = false ]]
1860	do
1861	cputime=$cpumax
1862	if (( $cputime == 0 ))
1863	then
1864	if [[ $do_batch = true ]]
1865	then
1866	printf "\n +++ cpu-time is undefined"
1867	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1868	printf "\n >>> "
1869	read cputime 1>/dev/null 2>&1
1870	else
1871	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1872	fi
1873	else
1874	done=true
1875	fi
1876	cpumax=$cputime
1877	done
1878
1879	(( minuten = cputime / 60 ))
1880	(( sekunden = cputime - minuten * 60 ))
1881
1882
1883	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1884	if [[ $do_batch = true ]]
1885	then
1886	done=false
1887	while [[ $done = false ]]
1888	do
1889	if (( memory == 0 ))
1890	then
1891	printf "\n +++ memory demand is undefined"
1892	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1893	printf "\n >>> "
1894	read memory 1>/dev/null 2>&1
1895	else
1896	done=true
1897	fi
1898	done
1899	fi
1900
1901
1902	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1903	if [[ $do_remote = true && -z $remote_username ]]
1904	then
1905	while [[ -z $remote_username ]]
1906	do
1907	printf "\n +++ username on remote host \"$host\" is undefined"
1908	printf "\n >>> Please type username:"
1909	printf "\n >>> "
1910	read remote_username
1911	done
1912	mc="$mc -u$remote_username"
1913	fi
1914
1915	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1916	if [[ "$login_init_cmd" != "" ]]
1917	then
1918	export init_cmds="${login_init_cmd};"
1919	fi
1920
1921
1922	# set module load command and export for subjob
1923	if [[ "$modules" != "" ]]
1924	then
1925	if [[ $host = lctit ]]
1926	then
1927	export module_calls=". $modules"
1928	else
1929	export module_calls="module load ${modules};"
1930	fi
1931	fi
1932
1933	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1934	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1935	then
1936	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1937	then
1938	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1939	fi
1940	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1941	# then
1942	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1943	# echo "*** module_calls = $module_calls"
1944	# fi
1945	fi
1946
1947
1948	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1949	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1950	then
1951	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1952	then
1953	mpilib=mpt
1954	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1955	then
1956	mpilib=mvapich
1957	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1958	then
1959	mpilib=impi
1960	fi
1961	fi
1962
1963
1964
1965	###########################################################################
1966	# HEADER-AUSGABE
1967	###########################################################################
1968
1969
1970	calltime=$(date)
1971	printf "\n"
1972	# [[ $silent = false ]] && clear
1973	printf "#--------------------------------------------------------------# \n"
1974	printf "\| $version$calltime \| \n"
1975	printf "\| \| \n"
1976	spalte1="called on:"; spalte2=$localhost_realname
1977	printf "\| $spalte1$spalte2 \| \n"
1978	if [[ $local_compile = false ]]
1979	then
1980	if [[ $do_remote = true ]]
1981	then
1982	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1983	else
1984	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1985	fi
1986	else
1987	spalte1="compiling test only!"; spalte2=""
1988	fi
1989	printf "\| $spalte1$spalte2 \| \n"
1990	if [[ -n $numprocs ]]
1991	then
1992	spalte1="number of PEs:"; spalte2=$numprocs
1993	printf "\| $spalte1$spalte2 \| \n"
1994	fi
1995	if [[ -n $tasks_per_node ]]
1996	then
1997	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1998	printf "\| $spalte1$spalte2 \| \n"
1999	fi
2000	if [[ $maximum_parallel_io_streams != $numprocs ]]
2001	then
2002	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2003	printf "\| $spalte1$spalte2 \| \n"
2004	fi
2005	if [[ $use_openmp = true ]]
2006	then
2007	spalte1="threads per task:"; spalte2="$threads_per_task"
2008	printf "\| $spalte1$spalte2 \| \n"
2009	fi
2010	printf "\| \| \n"
2011	if [[ $do_compile = true ]]
2012	then
2013	if [[ "$mopts" != "" ]]
2014	then
2015	spalte1="make options:"; spalte2=$mopts
2016	printf "\| $spalte1$spalte2 \| \n"
2017	zeile=$(echo "$mopts" \| cut -c41-)
2018	while [[ "$zeile" != "" ]]
2019	do
2020	spalte1=""
2021	spalte2=$zeile
2022	printf "\| $spalte1$spalte2 \| \n"
2023	zeile=$(echo "$zeile" \| cut -c41-)
2024	done
2025	fi
2026
2027	spalte1="cpp directives:"; spalte2=$cpp_options
2028	printf "\| $spalte1$spalte2 \| \n"
2029	zeile=$(echo "$cpp_options" \| cut -c41-)
2030	while [[ "$zeile" != "" ]]
2031	do
2032	spalte1=""
2033	spalte2=$zeile
2034	printf "\| $spalte1$spalte2 \| \n"
2035	zeile=$(echo "$zeile" \| cut -c41-)
2036	done
2037
2038	spalte1="compiler options:"; spalte2="$fopts"
2039	printf "\| $spalte1$spalte2 \| \n"
2040	zeile=$(echo "$fopts" \| cut -c41-)
2041	while [[ "$zeile" != "" ]]
2042	do
2043	spalte1=""
2044	spalte2=$zeile
2045	printf "\| $spalte1$spalte2 \| \n"
2046	zeile=$(echo "$zeile" \| cut -c41-)
2047	done
2048
2049	spalte1="linker options:"; spalte2=$lopts
2050	printf "\| $spalte1$spalte2 \| \n"
2051	zeile=$(echo "$lopts" \| cut -c41-)
2052	while [[ "$zeile" != "" ]]
2053	do
2054	spalte1=""
2055	spalte2=$zeile
2056	printf "\| $spalte1$spalte2 \| \n"
2057	zeile=$(echo "$zeile" \| cut -c41-)
2058	done
2059
2060	spalte1="modules to be load:"; spalte2=$modules
2061	printf "\| $spalte1$spalte2 \| \n"
2062	zeile=$(echo "$modules" \| cut -c41-)
2063	while [[ "$zeile" != "" ]]
2064	do
2065	spalte1=""
2066	spalte2=$zeile
2067	printf "\| $spalte1$spalte2 \| \n"
2068	zeile=$(echo "$zeile" \| cut -c41-)
2069	done
2070
2071	spalte1="main program":; spalte2=$mainprog
2072	printf "\| $spalte1$spalte2 \| \n"
2073	else
2074	spalte1=executable:; spalte2=$executable
2075	printf "\| $spalte1$spalte2 \| \n"
2076	fi
2077	printf "\| \| \n"
2078	spalte1="base name of files":; spalte2=$fname
2079	printf "\| $spalte1$spalte2 \| \n"
2080	if [[ $fname != $afname ]]
2081	then
2082	spalte1="base name of input files":; spalte2=$afname
2083	printf "\| $spalte1$spalte2 \| \n"
2084	fi
2085	spalte1="INPUT control list":; spalte2=$input_list
2086	printf "\| $spalte1$spalte2 \| \n"
2087	spalte1="OUTPUT control list":; spalte2=$output_list
2088	printf "\| $spalte1$spalte2 \| \n"
2089
2090	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2091	then
2092	spalte1="memory demand / PE":; spalte2="$memory MB"
2093	printf "\| $spalte1$spalte2 \| \n"
2094	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2095	printf "\| $spalte1$spalte2 \| \n"
2096	fi
2097
2098	if [[ $do_compile = true ]]
2099	then
2100	printf "\| \| \n"
2101	printf "\| Files to be compiled: \| \n"
2102	zeile=$source_list
2103	while [[ "$zeile" != "" ]]
2104	do
2105	spalte3=$zeile
2106	printf "\| $spalte3 \| \n"
2107	zeile=$(echo "$zeile" \| cut -c61-)
2108	done
2109	fi
2110	printf "#--------------------------------------------------------------#"
2111
2112
2113
2114	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2115	if [[ $do_trace = true ]]
2116	then
2117	(( i = 0 ))
2118	while (( i < iin ))
2119	do
2120	(( i = i + 1 ))
2121	if (( i == 1 ))
2122	then
2123	printf "\n\n >>> INPUT-file assignments:\n"
2124	fi
2125	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2126	done
2127	(( i = 0 ))
2128	while (( i < iout ))
2129	do
2130	(( i = i + 1 ))
2131	if (( i == 1 ))
2132	then
2133	printf "\n\n >>> OUTPUT-file assignments:\n"
2134	fi
2135	printf "\n ${localout[$i]} : ${pathout[$i]}"
2136	done
2137	(( i = 0 ))
2138	while (( i < iic ))
2139	do
2140	(( i = i + 1 ))
2141	if (( i == 1 ))
2142	then
2143	printf "\n\n >>> INPUT-commands:\n"
2144	fi
2145	printf "\n ${in_command[$i]}"
2146	done
2147	(( i = 0 ))
2148	while (( i < ioc ))
2149	do
2150	(( i = i + 1 ))
2151	if (( i == 1 ))
2152	then
2153	printf "\n\n >>> OUTPUT-commands:\n"
2154	fi
2155	printf "\n ${out_command[$i]}"
2156	done
2157	fi
2158
2159
2160	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2161	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2162	then
2163	antwort=dummy
2164	printf "\n\n"
2165	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2166	do
2167	printf " >>> everything o.k. (y/n) ? "
2168	read antwort
2169	done
2170	if [[ $antwort = n \|\| $antwort = N ]]
2171	then
2172	locat=user_abort; (( iec = 0 )); exit
2173	fi
2174	if [[ $do_batch = true ]]
2175	then
2176	printf " >>> batch-job will be created and submitted"
2177	else
2178	if [[ $local_compile = false ]]
2179	then
2180	printf " >>> MRUN will now continue to execute on this machine"
2181	else
2182	printf " >>> a test compilation will now be carried out on this machine"
2183	fi
2184	fi
2185	fi
2186
2187	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2188
2189	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2190	check_depository="${working_directory}/trunk/UTIL"
2191	check_sources="${working_directory}/tmp_check_namelist_files"
2192	skip_check=false
2193
2194	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2195	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2196	then
2197	skip_check=true
2198	reason="run on remote host or parameter file check has not been compiled."
2199	fi
2200	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2201	then
2202	skip_check=true
2203	reason="parameter file check has not been compiled."
2204	fi
2205
2206	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2207	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2208	then
2209	skip_check=true
2210	reason="serial run."
2211	fi
2212
2213	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2214	if [[ $check_namelist_files == false ]]
2215	then
2216	skip_check=true
2217	reason="-z option set."
2218	fi
2219
2220	if [[ $fromhost != $localhost ]]
2221	then
2222	skip_check=true
2223	reason="submitting host is local host."
2224	fi
2225
2226	if [[ $run_coupled_model == true ]]
2227	then
2228	skip_check=true
2229	reason="coupled run."
2230	fi
2231
2232	if [[ $restart_run == true ]]
2233	then
2234	skip_check=true
2235	reason="restart run."
2236
2237	fi
2238
2239	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2240	((last_char = `echo $filename_input \| wc -c` - 1))
2241	last_char=`echo $filename_input \|cut -c$last_char`
2242	if [[ "$last_char" == "f" ]]
2243	then
2244	skip_check=true
2245	reason="restart run."
2246	fi
2247
2248	if [[ $skip_check == false ]]
2249	then
2250
2251	tmp_check=${working_directory}/tmp_check
2252
2253	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2254	# NOT NECESSARILY REQUIRED
2255	line=""
2256	found=false
2257	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2258	while read line1
2259	do
2260	line="$line1"
2261	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2262	then
2263	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2264	found=true
2265	fi
2266	done < $tmp_check
2267
2268	if [[ $found = false ]]
2269	then
2270	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2271	fi
2272
2273	rm -rf ${working_directory}/tmp_check
2274
2275	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2276	for item in $input_list
2277	do
2278	if [[ "$item" == "restart" ]]
2279	then
2280	check_restart=1
2281	else
2282	check_restart=0
2283	fi
2284	done
2285
2286	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2287	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2288	then
2289	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2290	locat=check_namelist; exit
2291	fi
2292
2293	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2294	if [[ $check_restart == 1 ]]
2295	then
2296
2297
2298
2299	filenamef="${filename_input}f"
2300	if [[ ! -f $filenamef ]]
2301	then
2302	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2303	check_restart=0
2304	answer=dummy
2305	printf "\n\n"
2306
2307	if [[ $silent == false ]]
2308	then
2309	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2310	do
2311	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2312	read answer
2313	done
2314	if [[ $answer = a \|\| $answer = A ]]
2315	then
2316	printf "\n +++ Aborting...."
2317	locat=normal; exit
2318	fi
2319	fi
2320	else
2321	check_restart=1
2322	fi
2323	fi
2324
2325	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2326	mkdir $check_sources
2327	cd $check_sources
2328
2329
2330	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2331	if [[ -d $add_source_path ]]
2332	then
2333	printf "\n\n *** copying files from $check_depository"
2334	cp $check_depository/check_namelist_files.tar ./
2335
2336	printf "\n\n *** untar of makefile and source files in $check_sources"
2337	tar -xf check_namelist_files.tar > /dev/null 2>&1
2338
2339	printf "\n\n *** adding user code."
2340	cp $add_source_path/* ./
2341	touch check_namelist_files.f90
2342
2343	# GET COMPILER OPTIONS AND PERFORM MAKE
2344	printf "\n\n *** compiling code if necessary...\n"
2345
2346	# workaround for batch jobs on local machine (lcxe6)
2347	if [[ $do_batch == true && $do_remote == false ]]
2348	then
2349	eval $init_cmds
2350	fi
2351
2352	copts_check="-cpp -D__parallel -D__check"
2353	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2354
2355	# GET MAKE OUTPUT
2356	if [[ $? != 0 ]]
2357	then
2358	printf "\n +++ error during make."
2359	answer=dummy
2360	printf "\n\n"
2361	if [[ $silent == false ]]
2362	then
2363	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2364	do
2365	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2366	read answer
2367	done
2368	if [[ $answer = a \|\| $answer = A ]]
2369	then
2370	printf "\n +++ Aborting..."
2371	rm -rf $check_sources
2372	locat=normal; exit
2373	else
2374	skip_check=true
2375	fi
2376	else
2377	skip_check=true
2378	fi
2379	fi
2380	else
2381	cp $PALM_BIN/check_namelist_files.x ./
2382	fi
2383
2384	cp $filename_input ./PARIN
2385	if [[ $check_restart == 1 ]]
2386	then
2387	cp $filenamef ./PARINF
2388	fi
2389
2390	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2391	then
2392	printf "\n *** adding topography data"
2393	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2394
2395	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2396	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2397	# WHICH REQUIRE SUFFICIENT MEMORY
2398	ulimit -s unlimited
2399	fi
2400
2401	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2402	cat > ENVPAR << %%END%%
2403	&envpar run_identifier = '$fname', host = '$host',
2404	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2405	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2406	maximum_cpu_time_allowed = ${cpumax}.,
2407	revision = '$global_revision',
2408	local_dvrserver_running = $local_dvrserver_running /
2409
2410	%%END%%
2411
2412	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2413	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2414	printf "\n +++ WARNING: check_namelist_files.x not found."
2415	answer=dummy
2416	printf "\n\n"
2417
2418	if [[ $silent == false ]]
2419	then
2420	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2421	do
2422	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2423	read answer
2424	done
2425	if [[ $answer = a \|\| $answer = A ]]
2426	then
2427	printf "\n +++ Aborting..."
2428	rm -rf $check_sources
2429	locat=normal; exit
2430	else
2431	printf "\n *** skipping parameter file check."
2432
2433	fi
2434	fi
2435
2436	elif [[ $skip_check == false ]]
2437	then
2438	# STARTING THE PARAMETER FILE CHECK
2439	printf "\n\n *** starting parameter file check..."
2440
2441	# CHECKING THE P3D FILE
2442	printf "\n\n (1) checking $filename_input"
2443	echo "$numprocs 0 0" > VARIN
2444	errors=`./check_namelist_files.x < VARIN 2>&1`
2445
2446	check_error=false
2447	if [[ "$errors" == "" ]]
2448	then
2449	printf " --> o.k."
2450	else
2451	printf " --> failed."
2452	check_error=true
2453	printf "\n\n $errors"
2454	fi
2455
2456	# CHECKING THE PD3F FILE IF NECESSARY
2457	if [[ $check_restart == 1 && $check_error == false ]]
2458	then
2459	printf "\n\n (2) checking $filenamef"
2460
2461	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2462	found=false
2463	cat PARINF\|while read line
2464	do
2465	line=$(echo $line\|sed 's/ //g')
2466	if [[ $line == "&inipar" ]]
2467	then
2468	start_search=true
2469	fi
2470
2471	if [[ $start_search == true ]]
2472	then
2473	if [[ $line == "initializing_actions='read_restart_data'" ]]
2474	then
2475	found=true
2476	break
2477	fi
2478	fi
2479
2480	if [[ $line == "/" ]]
2481	then
2482	start_search=false
2483	fi
2484
2485	done
2486
2487	if [[ $found = false ]]
2488	then
2489	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2490	printf "\n in &inipar list in $fname$p3df_suffix."
2491	rm -rf $check_sources
2492	locat=check_namelist; exit
2493	fi
2494
2495	# READ max_user_pr FROM FILES
2496	if [[ -f parin_for_check ]]
2497	then
2498	read max_pr_user < parin_for_check
2499	else
2500	max_user_pr=0
2501	fi
2502
2503	echo "$numprocs 1 $max_pr_user" > VARIN
2504	errors=`./check_namelist_files.x < VARIN 2>&1`
2505
2506	if [[ "$errors" == "" ]]
2507	then
2508	printf " --> o.k."
2509	else
2510	printf " --> failed."
2511	check_error=true
2512	printf "\n\n $errors"
2513	fi
2514	fi
2515
2516	# REPORT ERRORS AND CONTINUE/EXIT
2517	if [[ $check_error == true ]]
2518	then
2519	printf "\n +++ errors found in the parameter file!\n"
2520	answer=dummy
2521	printf "\n\n"
2522
2523	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2524	do
2525	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2526	read answer
2527	done
2528
2529	if [[ $answer = a \|\| $answer = A ]]
2530	then
2531	printf "\n +++ Aborting..."
2532	rm -rf $check_sources
2533	locat=normal; exit
2534	fi
2535	else
2536	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2537	fi
2538	rm -rf $check_sources
2539	fi
2540	else
2541	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2542	fi
2543
2544	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2545	rm -rf $check_sources
2546	cd $working_directory
2547
2548
2549	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2550	# CHENDE AKTIONEN DURCHGEFUEHRT
2551	if [[ $do_batch = false ]]
2552	then
2553
2554
2555	# TEMPORAEREN KATALOG ERZEUGEN
2556	mkdir -p $TEMPDIR
2557	chmod go+rx $TEMPDIR
2558	tmpcreate=true
2559
2560	# set striping on lustre file system
2561	# if [[ $localhost = lcsgih ]]
2562	# then
2563	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2564	# lfs getstripe $TEMPDIR
2565	# fi
2566
2567
2568	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2569	# TEMPORAERES VERZEICHNIS KOPIEREN
2570	if [[ $do_compile = true ]]
2571	then
2572
2573	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2574	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2575	if [[ $localhost = nech ]]
2576	then
2577	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2578	if mkdir -p $TEMPDIR_COMPILE
2579	then
2580	printf "\n *** \"$TEMPDIR_COMPILE\" "
2581	printf "\n is generated as temporary directory for cross compiling\n"
2582	else
2583	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2584	printf "\n needed for cross compilation failed"
2585	locat=compile
2586	exit
2587	fi
2588	else
2589	TEMPDIR_COMPILE=$TEMPDIR
2590	fi
2591
2592
2593	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2594	line=""
2595	grep "%depository_path" $config_file > tmp_mrun
2596	while read line
2597	do
2598	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2599	then
2600	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2601	then
2602	global_depository_path=`echo $line \| cut -d" " -s -f2`
2603	fi
2604	fi
2605	done < tmp_mrun
2606
2607	line=""
2608	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2609	while read line
2610	do
2611	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2612	then
2613	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2614	then
2615	local_depository_path=`echo $line \| cut -d" " -s -f2`
2616	fi
2617	fi
2618	done < tmp_mrun
2619
2620	if [[ "$local_depository_path" = "" ]]
2621	then
2622	if [[ "$global_depository_path" != "" ]]
2623	then
2624	local_depository_path=$global_depository_path
2625	else
2626	printf "\n\n +++ no depository path found in configuration file"
2627	printf "\n for local host \"$localhost\" "
2628	printf "\n please set \"\%depository_path\" in configuration file\n"
2629	locat=config_file; exit
2630	fi
2631	fi
2632	eval local_depository_path=$local_depository_path
2633	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2634	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2635
2636
2637	basename=`print $mainprog \| cut -f1 -d"."`
2638	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2639	if [[ ! -f $make_depository ]]
2640	then
2641	printf "\n"
2642	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2643	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2644	else
2645	cp $make_depository $TEMPDIR_COMPILE
2646	cd $TEMPDIR_COMPILE
2647	tar -xf $make_depository > /dev/null 2>&1
2648	cd - > /dev/null
2649	fi
2650
2651	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2652
2653	else
2654
2655	cp $executable ${TEMPDIR}/a.out
2656
2657	fi
2658
2659
2660	# WECHSEL IN TEMPORAEREN KATALOG
2661	cd $TEMPDIR
2662	printf "\n *** changed to temporary directory: $TEMPDIR"
2663
2664
2665	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2666	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2667	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2668	# ERMITTELN
2669	(( i = 0 ))
2670	while (( i < iout ))
2671	do
2672	(( i = i + 1 ))
2673	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2674	then
2675	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2676	else
2677	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2678	fi
2679	done
2680
2681
2682	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2683	if [[ $do_compile = true ]]
2684	then
2685
2686
2687	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2688	printf "\n\n\n *** compilation starts \n$striche\n"
2689	printf " *** compilation with make using following options:\n"
2690	printf " make depository: $make_depository"
2691	if [[ "$mopts" != "" ]]
2692	then
2693	printf " make options: $mopts\n"
2694	fi
2695	printf " compilername: $compiler_name\n"
2696	printf " compiler options: $fopts\n"
2697	printf " preprocessor directives: $cpp_options \n"
2698	printf " linker options: $lopts \n"
2699	if [[ "$modules" != "" ]]
2700	then
2701	printf " modules to be load: $modules \n"
2702	fi
2703	printf " source code files: $source_list \n"
2704
2705	if [[ $localhost = nech ]]
2706	then
2707	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2708	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2709	cp $TEMPDIR_COMPILE/a.out .
2710	[[ $? != 0 ]] && compile_error=true
2711	rm -rf $TEMPDIR_COMPILE
2712	elif [[ $localhost = ibmh ]]
2713	then
2714	printf " compiler is called via ssh on \"plogin1\" \n"
2715	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2716	[[ ! -f a.out ]] && compile_error=true
2717	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2718	elif [[ $localhost = lcsgib ]]
2719	then
2720	printf " compiler is called via ssh on \"bicegate0\" \n"
2721	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2722	[[ ! -f a.out ]] && compile_error=true
2723	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2724	elif [[ $localhost = lcsgih ]]
2725	then
2726	printf " compiler is called via ssh on \"hicegate0\" \n"
2727	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2728	[[ ! -f a.out ]] && compile_error=true
2729	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2730	elif [[ $localhost = lcflow ]]
2731	then
2732	printf " compiler is called via ssh on \"flow\" \n"
2733	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2734	[[ ! -f a.out ]] && compile_error=true
2735	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2736	else
2737	[[ "$init_cmds" != "" ]] && eval $init_cmds
2738	[[ "$module_calls" != "" ]] && eval $module_calls
2739	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2740
2741	fi
2742
2743	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2744	then
2745	printf "\n +++ error occured while compiling or linking"
2746	locat=compile
2747
2748	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2749	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2750	# then
2751	exit
2752	# else
2753	# locat=normal
2754	# fi
2755	else
2756	printf "$striche\n *** compilation finished \n"
2757	fi
2758	fi
2759
2760
2761	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2762	if [[ $local_compile = true ]]
2763	then
2764	cd $HOME
2765	rm -rf $TEMPDIR
2766	locat=local_compile; exit
2767	fi
2768
2769
2770	# BEREITSTELLEN DER INPUT-DATEIEN
2771	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2772	(( i = 0 ))
2773	while (( i < iin ))
2774	do
2775	(( i = i + 1 ))
2776	if (( i == 1 ))
2777	then
2778	printf "\n\n *** providing INPUT-files:\n$striche"
2779	fi
2780
2781
2782	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2783	if [[ "${transin[$i]}" = unavailable ]]
2784	then
2785	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2786	then
2787	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2788	printf "\n is not available!"
2789	else
2790	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2791	printf "\n is not available!"
2792	fi
2793	continue
2794	fi
2795
2796	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2797	files_for_pes=false; datentyp=file
2798	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2799	then
2800	files_for_pes=true; datentyp=directory
2801	actionin[$i]=""
2802	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2803	then
2804	actionin[$i]=""
2805	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2806	then
2807	files_for_pes=true; datentyp=directory
2808	actionin[$i]="ar"
2809	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2810	then
2811	actionin[$i]="ar"
2812	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2813	then
2814	files_for_pes=true; datentyp=directory
2815	actionin[$i]="fl"
2816	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2817	then
2818	actionin[$i]="fl"
2819	fi
2820
2821	if [[ $files_for_pes = true ]]
2822	then
2823	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2824	else
2825	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2826	fi
2827
2828	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2829	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2830	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2831	# SERVER ZU HOLEN
2832	if [[ "${actionin[$i]}" = fl ]]
2833	then
2834	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2835	if [[ $files_for_pes = false ]]
2836	then
2837	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2838	then
2839	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2840	got_tmp[$i]=true
2841	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2842	then
2843	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2844	printf "\n *** trying to use backup copy in \"$WORK\" "
2845	cp $WORK/${frelin[$i]} ${localin[$i]}
2846	else
2847	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2848	printf "\n or \"$tmp_data_catalog\" does not exist!"
2849	printf "\n *** trying to get copy from archive"
2850	actionin[$i]=ar
2851	fi
2852	else
2853	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2854	then
2855	mkdir ${localin[$i]}
2856	cd $tmp_data_catalog/${frelin[$i]}
2857	for file in $(ls *)
2858	do
2859	ln $file $TEMPDIR/${localin[$i]}
2860	done
2861	cd $TEMPDIR
2862	got_tmp[$i]=true
2863	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2864	then
2865	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2866	printf "\n *** trying to use backup copy in \"$WORK\" "
2867	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2868	else
2869	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2870	printf "\n or \"$tmp_data_catalog\" does not exist!"
2871	printf "\n *** trying to get copy from archive"
2872	actionin[$i]=ar
2873	fi
2874	fi
2875	fi
2876
2877
2878	# DATEI LIEGT AUF ARCHIV-SERVER
2879	if [[ "${actionin[$i]}" = ar ]]
2880	then
2881
2882	if [[ $files_for_pes = false ]]
2883	then
2884	printf "\n file will be restored from archive-system ($archive_system)!"
2885	else
2886	printf "\n directory will be restored from archive-system ($archive_system)!"
2887	fi
2888
2889	file_restored=false
2890
2891	if [[ $archive_system = asterix ]]
2892	then
2893	do_stagein=true
2894	(( stagein_anz = 0 ))
2895	while [[ $do_stagein = true ]]
2896	do
2897	if [[ $files_for_pes = false ]]
2898	then
2899	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2900	else
2901	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2902	fi
2903	cat STAGEIN_OUTPUT
2904	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2905	then
2906	file_restored=true
2907	do_stagein=false
2908	else
2909	(( stagein_anz = stagein_anz + 1 ))
2910	if (( stagein_anz == 10 ))
2911	then
2912	printf "\n +++ stagein stoped after 10 tries"
2913	locat=stage
2914	exit
2915	fi
2916	printf "\n +++ restoring from archive failed, trying again:"
2917	sleep 900
2918	fi
2919	done
2920	elif [[ $archive_system = DMF ]]
2921	then
2922	if [[ $files_for_pes = false ]]
2923	then
2924	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2925	locat=DMF
2926	exit
2927	else
2928	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2929	cp -r $ARCHIVE/${frelin[$i]} $PWD
2930	file_restored=true
2931	fi
2932	elif [[ $archive_system = tivoli ]]
2933	then
2934	if [[ $files_for_pes = false ]]
2935	then
2936	if [[ $localhost = lcsgih ]]
2937	then
2938	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2939	else
2940	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2941	fi
2942	else
2943	(( inode = 0 ))
2944	while (( inode < nodes ))
2945	do
2946	if [[ $localhost = lcsgih ]]
2947	then
2948	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2949	else
2950	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2951	fi
2952	(( inode = inode + 1 ))
2953	done
2954	fi
2955	file_restored=true
2956	elif [[ $archive_system = ut ]]
2957	then
2958	if [[ $files_for_pes = false ]]
2959	then
2960	cp $UT/${frelin[$i]} .
2961	else
2962	(( inode = 0 ))
2963	while (( inode < nodes ))
2964	do
2965	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2966	(( inode = inode + 1 ))
2967	done
2968	fi
2969	file_restored=true
2970	else
2971	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2972	locat=rearchive
2973	exit
2974	fi
2975
2976	if [[ $file_restored = true ]]
2977	then
2978
2979	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2980	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2981	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2982	if [[ $files_for_pes = false ]]
2983	then
2984	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2985	else
2986	mkdir $tmp_data_catalog/${frelin[$i]}
2987	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2988	fi
2989	got_tmp[$i]=true
2990
2991	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2992	mv ${frelin[$i]} ${localin[$i]}
2993
2994	fi
2995	fi
2996
2997
2998	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2999	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3000	then
3001
3002	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3003	then
3004
3005	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3006	printf "\n file will be provided for $numprocs processors"
3007	mkdir ${localin[$i]}
3008	ival=$numprocs
3009	(( ii = 0 ))
3010	while (( ii <= ival-1 ))
3011	do
3012	if (( ii < 10 ))
3013	then
3014	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3015	elif (( ii < 100 ))
3016	then
3017	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3018	elif (( ii < 1000 ))
3019	then
3020	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3021	else
3022	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3023	fi
3024	(( ii = ii + 1 ))
3025	done
3026
3027	else
3028
3029	if [[ $files_for_pes = true ]]
3030	then
3031
3032	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3033	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3034	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3035	# PER MOVE UMBENANNT WERDEN
3036	printf "\n providing $numprocs files for the respective processors"
3037	mkdir ${localin[$i]}
3038	if [[ $link_local_input = true ]]
3039	then
3040	printf " using ln -f\n"
3041	cd ${absnamein[$i]}
3042	for file in $(ls *)
3043	do
3044	ln -f $file ${localin[$i]}
3045	done
3046	cd $TEMPDIR
3047	fi
3048	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3049	if [[ ! -f "${localin[$i]}/_0000" ]]
3050	then
3051	if [[ $link_local_input = true ]]
3052	then
3053	printf " ln failed for .../_0000, using cp...\n"
3054	fi
3055	cp -r ${absnamein[$i]}/* ${localin[$i]}
3056	fi
3057
3058	else
3059	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3060	if [[ $link_local_input = true ]]
3061	then
3062	printf " using ln -f\n"
3063	ln -f ${absnamein[$i]} ${localin[$i]}
3064	fi
3065	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3066	if [[ ! -f "${localin[$i]}" ]]
3067	then
3068	if [[ $link_local_input = true ]]
3069	then
3070	printf " ln failed, using cp...\n"
3071	fi
3072	cp ${absnamein[$i]} ${localin[$i]}
3073	fi
3074	fi
3075	fi
3076	fi
3077
3078	done
3079	if (( i != 0 ))
3080	then
3081	printf "\n$striche\n *** all INPUT-files provided \n"
3082	fi
3083
3084
3085	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3086	(( i = 0 ))
3087	while (( i < iic ))
3088	do
3089	(( i = i + 1 ))
3090	if (( i == 1 ))
3091	then
3092	printf "\n\n *** execution of INPUT-commands:\n$striche"
3093	fi
3094	printf "\n >>> ${in_command[$i]}"
3095	eval ${in_command[$i]}
3096	if (( i == iic ))
3097	then
3098	printf "\n$striche\n"
3099	fi
3100	done
3101
3102
3103	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3104	cpurest=${cpumax}.
3105
3106
3107	# START DVR STREAMING SERVER
3108	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3109	then
3110	if [[ "$dvr_server" != "" ]]
3111	then
3112
3113	printf "\n\n *** preparing the dvr streaming server configuration file"
3114
3115	# Check, if a dvr server is already running
3116	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3117	if [[ "$running_dvrserver_id" != "" ]]
3118	then
3119
3120	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3121	printf "\n This server is used instead starting a new one!"
3122	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3123
3124	else
3125
3126	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3127	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3128	then
3129	cp ${PALM_BIN}/.dvrserver.config .
3130
3131	# Entering the BASEDIR, UID and GID into this file
3132	user_id=`id -u`
3133	group_id=`id -g`
3134	# & is needed as seperator, because TEMPDIR contains /
3135	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3136	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3137	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3138	mv .dvrserver.3 .dvrserver.config
3139	rm .dvrserver.1 .dvrserver.2
3140
3141	# Start dvr server in background, get his id and print on terminal
3142	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3143	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3144	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3145	local_dvrserver_running=.TRUE.
3146	else
3147	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3148	printf "\n \"$PALM_BIN\" "
3149	locat=dvr
3150	exit
3151	fi
3152
3153	fi
3154
3155	else
3156	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3157	fi
3158	fi
3159
3160
3161	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3162	# LESEN VON PALM)
3163	cat > ENVPAR << %%END%%
3164	&envpar run_identifier = '$fname', host = '$localhost',
3165	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3166	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3167	maximum_cpu_time_allowed = ${cpumax}.,
3168	revision = '$global_revision',
3169	local_dvrserver_running = $local_dvrserver_running /
3170
3171	%%END%%
3172
3173
3174	# PROGRAMMSTART
3175	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3176	PATH=$PATH:$TEMPDIR
3177
3178	# MPI debug option (argument checking, slows down execution due to increased latency)
3179	if [[ "$mpi_debug" = true ]]
3180	then
3181	export MPI_CHECK_ARGS=1
3182	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3183	fi
3184
3185	if [[ "$totalview" = true ]]
3186	then
3187	printf "\n *** totalview debugger will be used"
3188	tv_opt="-tv"
3189	else
3190	tv_opt=""
3191	fi
3192
3193	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3194	then
3195	if [[ "$ENVIRONMENT" = BATCH ]]
3196	then
3197	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3198	then
3199	printf "\n +++ debug is allowed in interactive mode only"
3200	locat=debug
3201	exit
3202	fi
3203	fi
3204	if [[ $localhost = decalpha ]]
3205	then
3206	dxladebug a.out
3207	elif [[ $localhost = ibmh ]]
3208	then
3209
3210	# SETUP THE IBM MPI ENVIRONMENT
3211	export MP_SHARED_MEMORY=yes
3212	export AIXTHREADS_SCOPE=S
3213	export OMP_NUM_THREADS=$threads_per_task
3214	export AUTHSTATE=files
3215	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3216
3217	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3218	export MP_ADAPTER_USE=shared
3219	export MP_CPU_USE=multiple
3220	export MP_TIMEOUT=1200
3221
3222	unset MP_TASK_AFFINITY
3223
3224	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3225	#(( ii = 1 ))
3226	#while (( ii <= $numprocs ))
3227	#do
3228	# echo $localhost_realname >> hostfile
3229	# (( ii = ii + 1 ))
3230	#done
3231	#export MP_HOSTFILE=hostfile
3232
3233	if [[ "$LOADLBATCH" = yes ]]
3234	then
3235	totalview poe a.out $ROPTS
3236	else
3237	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3238	export TVDSVRLAUNCHCMD=ssh
3239	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3240	fi
3241	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3242	then
3243	# CURRENTLY NO DEBUGGER ON LCSGI
3244	if [[ $run_coupled_model = true ]]
3245	then
3246	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3247	locat=debug
3248	exit
3249	else
3250	echo "no_coupling" > runfile_atmos
3251	fi
3252	(( ii = $numprocs / $threads_per_task ))
3253	export OMP_NUM_THREADS=$threads_per_task
3254	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3255	if [[ $threads_per_task != 1 ]]
3256	then
3257	printf "\n threads per task: $threads_per_task"
3258	fi
3259	printf "\n\n"
3260	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3261	then
3262	# export MPI_LAUNCH_TIMEOUT=360
3263	if [[ "$totalview" = true ]]
3264	then
3265	printf "\n running totalview debugger"
3266	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3267	else
3268	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3269	fi
3270	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3271	then
3272	# ulimit -s 300000 # A too large stack size causes problems
3273	# export MV2_NUM_PORTS=2
3274	# export MV2_CPU_MAPPING=0:1:2:3
3275	if [[ "$totalview" = true ]]
3276	then
3277	printf "\n running totalview debugger"
3278	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3279	else
3280	mpiexec ./a.out $ROPTS < runfile_atmos
3281	fi
3282	fi
3283	else
3284	printf "\n +++ no debug available on \"$localhost\" "
3285	printf "\n or not implemented in mrun so far"
3286	locat=debug
3287	exit
3288	fi
3289
3290	# end debug mode
3291	else
3292
3293	# normal execution
3294	if [[ -n $numprocs ]]
3295	then
3296	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3297	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3298	then
3299	# SETUP THE IBM MPI ENVIRONMENT
3300	if [[ $host != ibmh && $host != ibmkisti ]]
3301	then
3302	export MP_SHARED_MEMORY=yes
3303	export AIXTHREAD_SCOPE=S
3304	export OMP_NUM_THREADS=$threads_per_task
3305	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3306	export AUTHSTATE=files
3307	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3308	# export MP_PRINTENV=yes
3309
3310	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3311	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3312	export MP_WAIT_MODE=poll
3313	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3314	fi
3315
3316	if [[ $host = ibmkisti ]]
3317	then
3318	export LANG=en_US
3319	export MP_SHARED_MEMORY=yes
3320	if [[ $threads_per_task = 1 ]]
3321	then
3322	export MP_SINGLE_THREAD=yes
3323	export MEMORY_AFFINITY=MCM
3324	else
3325	export OMP_NUM_THREADS=$threads_per_task
3326	fi
3327	fi
3328
3329	if [[ "$LOADLBATCH" = yes ]]
3330	then
3331	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3332	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3333	then
3334	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3335	else
3336	if [[ $run_coupled_model = false ]]
3337	then
3338	if [[ "$ocean_file_appendix" = true ]]
3339	then
3340	echo "precursor_ocean" > runfile_atmos
3341	else
3342	echo "precursor_atmos" > runfile_atmos
3343	fi
3344	else
3345	(( iia = $numprocs_atmos / $threads_per_task ))
3346	(( iio = $numprocs_ocean / $threads_per_task ))
3347	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3348	printf "\n using $coupled_mode coupling"
3349	printf "\n\n"
3350	echo "coupled_run $iia $iio" > runfile_atmos
3351	fi
3352	poe ./a.out $ROPTS < runfile_atmos
3353	fi
3354	else
3355	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3356	then
3357	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3358	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3359	then
3360	if [[ -f $hostfile ]]
3361	then
3362	cp $hostfile hostfile
3363	else
3364	(( ii = 1 ))
3365	while (( ii <= $numprocs ))
3366	do
3367	echo $localhost_realname >> hostfile
3368	(( ii = ii + 1 ))
3369	done
3370	fi
3371	export MP_HOSTFILE=hostfile
3372	if [[ $run_coupled_model = false ]]
3373	then
3374	if [[ "$ocean_file_appendix" = true ]]
3375	then
3376	echo "precursor_ocean" > runfile_atmos
3377	else
3378	echo "precursor_atmos" > runfile_atmos
3379	fi
3380	else
3381	(( iia = $numprocs_atmos / $threads_per_task ))
3382	(( iio = $numprocs_ocean / $threads_per_task ))
3383	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3384	printf "\n using $coupled_mode coupling"
3385	printf "\n\n"
3386	echo "coupled_run $iia $iio" > runfile_atmos
3387	fi
3388	if [[ $localhost = ibmy ]]
3389	then
3390	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3391	else
3392	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3393	fi
3394
3395	else
3396	if [[ "$host_file" = "" ]]
3397	then
3398	printf "\n +++ no hostfile given in configuration file"
3399	locat=config_file
3400	exit
3401	else
3402	eval host_file=$host_file
3403	fi
3404	export MP_HOSTFILE=$host_file
3405	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3406	fi
3407	fi
3408	elif [[ $host = nech \|\| $host = necriam ]]
3409	then
3410	(( ii = nodes ))
3411	if [[ $ii = 1 ]]
3412	then
3413	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3414	export MPIPROGINF=YES
3415	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3416	echo "*** execution on single node with mpirun"
3417	mpirun -np $numprocs ./a.out $ROPTS
3418	else
3419	(( i = 0 ))
3420	while (( i < ii ))
3421	do
3422	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3423	(( i = i + 1 ))
3424	done
3425
3426	echo "#!/bin/sh" > mpi_exec_shell
3427	echo " " >> mpi_exec_shell
3428	echo "set -u" >> mpi_exec_shell
3429	echo "F_ERRCNT=0" >> mpi_exec_shell
3430	echo "MPIPROGINV=YES" >> mpi_exec_shell
3431	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3432	echo "cpurest=$cpurest" >> mpi_exec_shell
3433	echo "fname=$fname" >> mpi_exec_shell
3434	echo "localhost=$localhost" >> mpi_exec_shell
3435	echo "return_addres=$return_addres" >> mpi_exec_shell
3436	echo "return_username=$return_username" >> mpi_exec_shell
3437	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3438	echo "write_binary=$write_binary" >> mpi_exec_shell
3439	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3440	echo " " >> mpi_exec_shell
3441	echo "export F_ERRCNT" >> mpi_exec_shell
3442	echo "export MPIPROGINV" >> mpi_exec_shell
3443	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3444	echo "export cpurest" >> mpi_exec_shell
3445	echo "export fname" >> mpi_exec_shell
3446	echo "export localhost" >> mpi_exec_shell
3447	echo "export return_addres" >> mpi_exec_shell
3448	echo "export return_username" >> mpi_exec_shell
3449	echo "export tasks_per_node" >> mpi_exec_shell
3450	echo "export write_binary" >> mpi_exec_shell
3451	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3452	echo " " >> mpi_exec_shell
3453	echo "exec ./a.out" >> mpi_exec_shell
3454
3455	chmod u+x mpi_exec_shell
3456	export MPIPROGINF=YES
3457	mpirun -f multinode_config &
3458	wait
3459
3460	fi
3461	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3462	then
3463
3464	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3465	# DOES NOT EXIST
3466	if [[ $host != lcsgih && $host != lcsgib ]]
3467	then
3468	if [[ -f $hostfile ]]
3469	then
3470	cp $hostfile hostfile
3471	(( ii = $numprocs / $threads_per_task ))
3472	else
3473	(( ii = 1 ))
3474	while (( ii <= $numprocs / $threads_per_task ))
3475	do
3476	echo $localhost_realname >> hostfile
3477	(( ii = ii + 1 ))
3478	done
3479	fi
3480	eval zeile=\"`head -n $ii hostfile`\"
3481	printf "\n *** running on: $zeile"
3482	fi
3483
3484	(( ii = $numprocs / $threads_per_task ))
3485	export OMP_NUM_THREADS=$threads_per_task
3486	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3487	if [[ $threads_per_task != 1 ]]
3488	then
3489	# increase stack size to unlimited, because large runs
3490	# may abort otherwise
3491	ulimit -Ss unlimited
3492	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3493	fi
3494	if [[ $run_coupled_model = false ]]
3495	then
3496	if [[ "$ocean_file_appendix" = true ]]
3497	then
3498	echo "precursor_ocean" > runfile_atmos
3499	else
3500	echo "precursor_atmos" > runfile_atmos
3501	fi
3502	printf "\n\n"
3503	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3504	then
3505	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3506	then
3507	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3508	# export MPI_DSM_DISTRIBUTE=1
3509	# MPI_DSM_CPULIST: pin MPI processes to cores
3510	if [[ $use_openmp = false ]]
3511	then
3512	if [[ "$sgi_feature" = ice2 ]]
3513	then
3514	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3515	else
3516	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3517	fi
3518	else
3519	unset MPI_DSM_CPULIST
3520	fi
3521	# MPI_IB_RAILS: use both IB rails on ICE2
3522	export MPI_BUFS_PER_HOST=512
3523	export MPI_IB_RAILS=2
3524	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3525	export MPI_CONNECTIONS_THRESHOLD=8192
3526	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3527	export MPI_TYPE_DEPTH=20
3528	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3529	export MPI_GROUP_MAX=64
3530	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3531	if [[ $use_openmp = true ]]
3532	then
3533	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3534	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3535	else
3536	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3537	fi
3538
3539	# next is test for openmp usage
3540	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3541	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3542	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3543	then
3544	export MV2_NUM_PORTS=2
3545	# The default setting of MV2_CPU_MAPPING gives best results
3546	# export MV2_ENABLE_AFFINITY=1
3547	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3548	# if [[ "$sgi_feature" = ice2 ]]
3549	# then
3550	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3551	# else
3552	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3553	# fi
3554	if [[ $use_openmp = true ]]
3555	then
3556	unset MV2_CPU_MAPPING
3557	export MV2_ENABLE_AFFINITY=0
3558	fi
3559	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3560	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3561	if [[ $use_openmp = true ]]
3562	then
3563	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3564	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3565	else
3566	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3567	fi
3568	elif [[ "$mpilib" = impi ]]
3569	then
3570	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3571	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3572	fi
3573	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3574	then
3575	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3576	elif [[ $host = lcflow ]]
3577	then
3578	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3579	elif [[ $host = lcsb ]]
3580	then
3581	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3582	elif [[ $host = lckiaps ]]
3583	then
3584	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3585	else
3586	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3587	fi
3588	else
3589
3590	# currently there is no full MPI-2 support on ICE and XT4
3591	(( iia = $numprocs_atmos / $threads_per_task ))
3592	(( iio = $numprocs_ocean / $threads_per_task ))
3593	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3594	printf "\n using $coupled_mode coupling"
3595	printf "\n\n"
3596
3597	if [[ $coupled_mode = "mpi2" ]]
3598	then
3599	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3600	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3601	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3602	then
3603
3604	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3605	then
3606	# export MPI_LAUNCH_TIMEOUT=360
3607	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3608	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3609	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3610	then
3611	# ulimit -s 300000 # A too large stack size causes problems
3612	# export MV2_NUM_PORTS=2
3613	# export MV2_CPU_MAPPING=0:1:2:3
3614	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3615	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3616	fi
3617
3618	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3619	then
3620
3621	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3622	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3623
3624	else
3625	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3626	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3627	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3628	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3629	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3630	fi
3631	wait
3632
3633	else
3634
3635	echo "coupled_run $iia $iio" > runfile_atmos
3636	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3637	then
3638
3639	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3640	then
3641	# export MPI_LAUNCH_TIMEOUT=360
3642	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3643	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3644	then
3645	# ulimit -s 300000 # A too large stack size causes problems
3646	# export MV2_NUM_PORTS=2
3647	# export MV2_CPU_MAPPING=0:1:2:3
3648	mpiexec ./a.out $ROPTS < runfile_atmos
3649	fi
3650
3651	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3652	then
3653
3654	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3655
3656	elif [[ $host = lck \|\| $host = lckordi ]]
3657	then
3658	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3659	fi
3660	wait
3661	fi
3662
3663	fi
3664	elif [[ $host = decalpha ]]
3665	then
3666	dmpirun -np $numprocs a.out $ROPTS
3667	elif [[ $host = lckyoto ]]
3668	then
3669	set -xv
3670	export P4_RSHCOMMAND=plesh
3671	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3672	if [[ "$ENVIRONMENT" = BATCH ]]
3673	then
3674	if [[ "$cond2" = fujitsu ]]
3675	then
3676	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3677	elif [[ "cond2" = pgi ]]
3678	then
3679	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3680	else
3681	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3682	fi
3683	else
3684	if [[ "$cond2" = "" ]]
3685	then
3686	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3687	else
3688	mpirun -np $numprocs ./a.out $ROPTS
3689	fi
3690	fi
3691	set +xv
3692	elif [[ $host = lctit ]]
3693	then
3694	export OMP_NUM_THREADS=$threads_per_task
3695	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3696	if [[ "$threads_per_task" != 1 ]]
3697	then
3698	export MV2_ENABLE_AFFINITY=0
3699	fi
3700	echo "----- PBS_NODEFILE content:"
3701	cat $PBS_NODEFILE
3702	echo "-----"
3703	(( ii = $numprocs / $threads_per_task ))
3704	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3705	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3706	else
3707	mpprun -n $numprocs a.out $ROPTS
3708	fi
3709	[[ $? != 0 ]] && execution_error=true
3710
3711
3712	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3713	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3714	then
3715	apprentice
3716	fi
3717	else
3718	a.out $ROPTS
3719	fi
3720	fi
3721	if [[ $? != 0 \|\| $execution_error = true ]]
3722	then
3723
3724	# ABBRUCH BEI LAUFZEITFEHLER
3725	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3726	printf "\n +++ runtime error occured"
3727	locat=execution
3728	exit
3729	else
3730	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3731	printf "\n$striche\n *** execution finished \n"
3732
3733	# Stop the dvr streaming server and process the dvr output in order
3734	# to create dvrs- and html-files containing all streams
3735	if [[ "$dvrserver_id" != "" ]]
3736	then
3737	kill $dvrserver_id
3738	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3739
3740	# If there is a directory, data have been output by the
3741	# streaming server. Otherwise, user has chosen dvrp_output=local
3742	if [[ -d DATA_DVR ]]
3743	then
3744
3745	# Add the current dvr configuration file to the dvr output
3746	# directory
3747	cp .dvrserver.config DATA_DVR
3748
3749	# Process the dvr output (option -s for also generating
3750	# sequence mode data)
3751	process_dvr_output -d DATA_DVR -f $fname -s
3752
3753	else
3754
3755	# Process the local output
3756	process_dvr_output -l -d DATA_DVR -f $fname
3757
3758	fi
3759
3760	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3761	then
3762
3763	# Process dvr output generated in local mode (dvrp_output=local)
3764	process_dvr_output -l -d DATA_DVR -f $fname
3765
3766	fi
3767	fi
3768
3769
3770
3771	# Call of combine_plot_fields in order to merge single files written
3772	# by each PE into one file.
3773	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3774	then
3775	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3776	printf "\n 2d- and/or 3d-data may be incomplete!"
3777	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3778	elif [[ "$combine_plot_fields" == true ]]
3779	then
3780	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3781	combine_plot_fields${block}.x
3782	else
3783	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3784	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3785	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3786	fi
3787
3788
3789
3790	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3791	(( i = 0 ))
3792	while (( i < ioc ))
3793	do
3794	(( i = i + 1 ))
3795	if (( i == 1 ))
3796	then
3797	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3798	fi
3799	printf "\n >>> ${out_command[$i]}"
3800	eval ${out_command[$i]}
3801	if (( i == ioc ))
3802	then
3803	printf "\n$striche\n"
3804	fi
3805	done
3806
3807
3808	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3809	if [[ $do_trace = true ]]
3810	then
3811	printf "\n\n"
3812	ls -al
3813	fi
3814
3815
3816
3817	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3818	(( i = 0 ))
3819	while (( i < iout ))
3820	do
3821	(( i = i + 1 ))
3822	if (( i == 1 ))
3823	then
3824	printf "\n\n *** saving OUTPUT-files:\n$striche"
3825	fi
3826
3827	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3828	files_for_pes=false; filetyp=file
3829	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3830	then
3831	files_for_pes=true; filetyp=directory
3832	actionout[$i]=""
3833	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3834	then
3835	actionout[$i]=""
3836	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3837	then
3838	files_for_pes=true; filetyp=directory
3839	actionout[$i]="ar"
3840	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3841	then
3842	actionout[$i]="ar"
3843	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3844	then
3845	files_for_pes=true; filetyp=directory
3846	actionout[$i]="fl"
3847	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3848	then
3849	actionout[$i]="fl"
3850	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3851	then
3852	files_for_pes=true; filetyp=directory
3853	actionout[$i]="tr"
3854	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3855	then
3856	actionout[$i]="tr"
3857	fi
3858
3859	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3860	then
3861	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3862	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3863	then
3864	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3865	else
3866
3867
3868	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3869	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3870	# REMOTE-RECHNUNGEN
3871	if [[ "${actionout[$i]}" = tr ]]
3872	then
3873	if [[ $localhost != $fromhost ]]
3874	then
3875	if [[ $files_for_pes = false ]]
3876	then
3877	cps=""
3878	cst=""
3879	else
3880	cps=-c
3881	cst="/"
3882	fi
3883	if [[ $localhost = nech ]]
3884	then
3885
3886	# TRANSFER IN EIGENSTAENDIGEM JOB
3887	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3888	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3889	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3890	if [[ $files_for_pes = false ]]
3891	then
3892	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3893	else
3894	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3895	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3896	fi
3897
3898	echo "set -x" > transfer_${localout[$i]}
3899	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3900
3901	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3902	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3903	printf "\n or higher cycle\n"
3904	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3905
3906	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3907
3908	if [[ $localhost = nech ]]
3909	then
3910	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3911	else
3912	if [[ "$LOGNAME" = b323013 ]]
3913	then
3914	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3915	else
3916	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3917	fi
3918	fi
3919
3920	else
3921
3922	# TRANSFER INNERHALB DIESES JOBS
3923	transfer_failed=false
3924	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3925	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3926	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3927	[[ $? != 0 ]] && transfer_failed=true
3928
3929	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3930	# LOKALER MASCHINE ANLEGEN
3931	if [[ $transfer_failed = true ]]
3932	then
3933	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3934	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3935
3936	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3937	# ANLEGEN.
3938	eval local_catalog=${pathout[$i]}
3939	if [[ ! -d $local_catalog ]]
3940	then
3941	printf " *** local directory does not exist. Trying to create:\n"
3942	printf " $local_catalog \n"
3943	mkdir -p $local_catalog
3944	fi
3945	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3946	transfer_problems=true
3947	fi
3948	fi
3949	else
3950
3951	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3952	actionout[$i]=""
3953	fi
3954	fi
3955
3956
3957	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3958	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3959	# REMOTE-RECHNUNGEN
3960	if [[ "${actionout[$i]}" = tra ]]
3961	then
3962	if [[ $localhost != $fromhost ]]
3963	then
3964	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3965	then
3966
3967	# TRANSFER IN EIGENSTAENDIGEM JOB
3968	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3969	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3970	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3971	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3972
3973	echo "set -x" > transfer_${localout[$i]}
3974	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3975
3976	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3977	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3978	printf "\n or higher cycle\n"
3979	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3980
3981	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3982
3983	if [[ $localhost = nech ]]
3984	then
3985	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3986	else
3987	if [[ $LOGNAME = b323013 ]]
3988	then
3989	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3990	else
3991	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3992	fi
3993	fi
3994
3995	else
3996
3997	# TRANSFER INNERHALB DIESES JOBS
3998	transfer_failed=false
3999	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4000	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4001	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4002	[[ $? != 0 ]] && transfer_failed=true
4003
4004	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4005	# LOKALER MASCHINE ANLEGEN
4006	if [[ $transfer_failed = true ]]
4007	then
4008	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4009	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4010
4011	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4012	# ANLEGEN
4013	eval local_catalog=${pathout[$i]}
4014	if [[ ! -d $local_catalog ]]
4015	then
4016	printf " *** local directory does not exist. Trying to create:\n"
4017	printf " $local_catalog \n"
4018	mkdir -p $local_catalog
4019	fi
4020
4021	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4022	transfer_problems=true
4023	fi
4024	fi
4025	else
4026
4027	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4028	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4029	actionout[$i]=a
4030	fi
4031	fi
4032
4033
4034	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4035	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4036	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4037	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4038	if [[ "${actionout[$i]}" = fl ]]
4039	then
4040	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4041	chmod g+rx $tmp_data_catalog
4042	if [[ $files_for_pes = false ]]
4043	then
4044	printf "\n >>> OUTPUT: ${localout[$i]} to"
4045	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4046	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4047	else
4048	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4049	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4050	mkdir $tmp_data_catalog/${frelout[$i]}
4051	cd ${localout[$i]}
4052	for file in $(ls *)
4053	do
4054	ln -f $file $tmp_data_catalog/${frelout[$i]}
4055	done
4056	cd $TEMPDIR
4057	fi
4058
4059
4060	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4061	if [[ $store_on_archive_system = true ]]
4062	then
4063
4064	if [[ $archive_system = asterix ]]
4065	then
4066	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4067	if [[ $files_for_pes = false ]]
4068	then
4069	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4070	else
4071	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4072	fi
4073	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4074	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4075	echo "then" >> archive_${frelout[$i]}
4076	echo " do_stageout=false" >> archive_${frelout[$i]}
4077	echo "else" >> archive_${frelout[$i]}
4078	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4079	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4080	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4081	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4082	if [[ $files_for_pes = false ]]
4083	then
4084	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4085	else
4086	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4087	fi
4088	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4089	echo "fi" >> archive_${frelout[$i]}
4090	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4091	elif [[ $archive_system = DMF ]]
4092	then
4093	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4094	if [[ $files_for_pes = false ]]
4095	then
4096	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4097	locat=DMF
4098	exit
4099	else
4100	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4101	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4102	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4103	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4104	fi
4105	elif [[ $archive_system = tivoli ]]
4106	then
4107	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4108	if [[ $files_for_pes = false ]]
4109	then
4110	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4111	echo "set -x" >> archive_${frelout[$i]}
4112	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4113	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4114	else
4115
4116	echo "set -x" >> archive_${frelout[$i]}
4117	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4118	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4119	cd $tmp_data_catalog
4120	all_files=`ls -1 ${frelout[$i]}/*`
4121	cd - > /dev/null
4122	(( inode = 0 ))
4123	(( tp1 = tasks_per_node + 1 ))
4124	while (( inode < nodes ))
4125	do
4126	# echo "*** all_files = \"$all_files\" "
4127	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4128	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4129	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4130	# echo "*** files = \"$files\" "
4131	# echo "*** all_files = \"$all_files\" "
4132	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4133	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4134	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4135	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4136	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4137	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4138	(( inode = inode + 1 ))
4139	done
4140	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4141	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4142	fi
4143	elif [[ $archive_system = ut ]]
4144	then
4145	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4146	if [[ $files_for_pes = false ]]
4147	then
4148	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4149	echo "set -x" >> archive_${frelout[$i]}
4150	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4151	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4152	else
4153
4154	echo "set -x" >> archive_${frelout[$i]}
4155	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4156	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4157	cd $tmp_data_catalog
4158	all_files=`ls -1 ${frelout[$i]}/*`
4159	cd - > /dev/null
4160	(( inode = 0 ))
4161	(( tp1 = tasks_per_node + 1 ))
4162	while (( inode < nodes ))
4163	do
4164	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4165	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4166	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4167	(( inode = inode + 1 ))
4168	done
4169	fi
4170	elif [[ $archive_system = none ]]
4171	then
4172	printf " +++ archiving on $localhost not available!\n"
4173	fi
4174
4175	if [[ $archive_system != none ]]
4176	then
4177	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4178	then
4179	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4180	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4181	elif [[ $localhost = nech ]]
4182	then
4183	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4184	fi
4185	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4186	fi
4187	else
4188	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4189	fi
4190
4191
4192	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4193	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4194	if [[ $files_for_pes = false ]]
4195	then
4196	cat /dev/null > ${pathout[$i]}
4197	else
4198	mkdir -p ${pathout[$i]}
4199	fi
4200
4201	fi
4202
4203
4204	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4205	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4206	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4207	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4208	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4209	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4210	if [[ "${actionout[$i]}" = ar ]]
4211	then
4212	if [[ $files_for_pes = false ]]
4213	then
4214	printf "\n >>> OUTPUT: ${localout[$i]} to"
4215	printf "\n ${pathout[$i]}"
4216	printf "\n File will be copied to archive-system ($archive_system) !\n"
4217	else
4218	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4219	printf "\n ${pathout[$i]}"
4220	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4221	fi
4222	mv ${localout[$i]} ${frelout[$i]}
4223
4224	file_saved=false
4225
4226	if [[ $archive_system = asterix ]]
4227	then
4228	do_stageout=true
4229	(( stageout_anz = 0 ))
4230	while [[ $do_stageout = true ]]
4231	do
4232	if [[ $files_for_pes = false ]]
4233	then
4234	stageout ${frelout[$i]} > STAGE_OUTPUT
4235	else
4236	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4237	fi
4238	cat STAGE_OUTPUT
4239	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4240	then
4241	file_saved=true
4242	do_stageout=false
4243	else
4244	if [[ $files_for_pes = false ]]
4245	then
4246	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4247	else
4248	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4249	fi
4250	(( stageout_anz = stageout_anz + 1 ))
4251	if (( stageout_anz == 10 ))
4252	then
4253	printf "\n +++ stoped after 10 unsuccessful tries!"
4254	archive_save=false
4255	do_stageout=false
4256	else
4257	printf "\n *** new try to store on archive after 15 min:"
4258	sleep 900
4259	fi
4260	fi
4261	done
4262	elif [[ $archive_system = DMF ]]
4263	then
4264	if [[ $files_for_pes = false ]]
4265	then
4266	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4267	locat=DMF
4268	exit
4269	else
4270	rm -rf $ARCHIVE/${frelout[$i]}
4271	cp -r ${frelout[$i]} $ARCHIVE
4272	fi
4273	file_saved=true
4274	elif [[ $archive_system = tivoli ]]
4275	then
4276	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4277	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4278	# GELEGT WERDEN
4279	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4280	chmod g+rx $tmp_data_catalog
4281	if [[ $files_for_pes = false ]]
4282	then
4283	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4284	else
4285	mkdir $tmp_data_catalog/${frelout[$i]}
4286	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4287	fi
4288
4289	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4290	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4291	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4292	if [[ $files_for_pes = false ]]
4293	then
4294	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4295	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4296	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4297	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4298	else
4299	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4300	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4301	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4302	fi
4303
4304	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4305	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4306	file_saved=true
4307
4308	elif [[ $archive_system = ut ]]
4309	then
4310	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4311	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4312	# GELEGT WERDEN
4313	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4314	chmod g+rx $tmp_data_catalog
4315	if [[ $files_for_pes = false ]]
4316	then
4317	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4318	else
4319	mkdir $tmp_data_catalog/${frelout[$i]}
4320	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4321	fi
4322
4323	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4324	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4325	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4326	if [[ $files_for_pes = false ]]
4327	then
4328	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4329	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4330	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4331	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4332	else
4333	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4334	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4335	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4336	fi
4337
4338	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4339	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4340	file_saved=true
4341
4342	else
4343	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4344	archive_save=false
4345	fi
4346	if [[ $file_saved = true ]]
4347	then
4348	if [[ $files_for_pes = false ]]
4349	then
4350	cat /dev/null > ${pathout[$i]}
4351	else
4352	mkdir -p ${pathout[$i]}
4353	fi
4354	fi
4355	fi
4356
4357	# APPEND AUF LOKALER MASCHINE
4358	if [[ "${actionout[$i]}" = "a" ]]
4359	then
4360	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4361	then
4362	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4363	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4364	else
4365	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4366	cat ${localout[$i]} >> ${pathout[$i]}
4367	fi
4368	fi
4369
4370	# KOPIEREN AUF LOKALER MASCHINE
4371	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4372	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4373	then
4374
4375	# KOPIEREN AUF EINPROZESSORMASCHINE
4376	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4377	then
4378	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4379	if [[ $link_local_output = true ]]
4380	then
4381	printf " using ln -f\n"
4382	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4383	fi
4384	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4385	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4386	then
4387	if [[ $link_local_output = true ]]
4388	then
4389	printf " ln failed, using cp...\n"
4390	fi
4391	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4392	fi
4393	else
4394	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4395	if [[ $link_local_output = true ]]
4396	then
4397	printf " using ln -f\n"
4398	ln -f ${localout[$i]} ${pathout[$i]}
4399	fi
4400	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4401	if [[ ! -f "${pathout[$i]}" ]]
4402	then
4403	if [[ $link_local_output = true ]]
4404	then
4405	printf " ln failed, using cp...\n"
4406	fi
4407	cp ${localout[$i]} ${pathout[$i]}
4408	fi
4409	fi
4410
4411	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4412	then
4413
4414	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4415	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4416	# WIRD DANN KOPIERT
4417	# PER MOVE UMBENANNT WERDEN
4418	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4419	if [[ $link_local_output = true ]]
4420	then
4421	printf " using ln -f\n"
4422	mkdir ${pathout[$i]}
4423	cd ${localout[$i]}
4424	for file in $(ls *)
4425	do
4426	ln -f $file ${pathout[$i]}
4427	done
4428	cd $TEMPDIR
4429	fi
4430	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4431	if [[ ! -f "${pathout[$i]}/_0000" ]]
4432	then
4433	if [[ $link_local_output = true ]]
4434	then
4435	printf " ln failed for .../_0000, using cp...\n"
4436	fi
4437	cp -r ${localout[$i]} ${pathout[$i]}
4438	fi
4439
4440	fi
4441	fi
4442	done
4443	if (( i != 0 ))
4444	then
4445	if [[ $transfer_problems = true ]]
4446	then
4447	printf "\n$striche\n *** OUTPUT-files saved"
4448	printf "\n +++ WARNING: some data transfers failed! \n"
4449	else
4450	printf "\n$striche\n *** all OUTPUT-files saved \n"
4451	fi
4452	fi
4453
4454
4455	# EVENTUELL FOLGEJOB STARTEN
4456	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4457	if [[ -f CONTINUE_RUN ]]
4458	then
4459
4460	if [[ $archive_save = true ]]
4461	then
4462
4463	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4464	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4465	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4466	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4467	# HANDEN
4468	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4469	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4470	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4471	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4472	then
4473	mc=`echo $mc \| sed 's/#/f/g'`
4474	fi
4475
4476
4477	# JOB STARTEN
4478	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4479	echo " $mc"
4480	printf "\n$striche\n"
4481	if [[ $localhost != $fromhost ]]
4482	then
4483
4484	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4485	then
4486	echo "*** ssh will be used to initiate restart-runs!"
4487	echo " return_addres=\"$return_addres\" "
4488	echo " return_username=\"$return_username\" "
4489	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4490	then
4491	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4492	else
4493	if [[ $localhost = ibmkisti ]]
4494	then
4495	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4496	else
4497	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4498	fi
4499	fi
4500	else
4501	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4502	locat=restart; exit
4503	fi
4504
4505	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4506	# DER AKTUELLE JOB ENDET
4507	if [[ $queue = special1q ]]
4508	then
4509	sleep 120
4510	else
4511	sleep 30
4512	fi
4513
4514	else
4515
4516	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4517	# RUFEN WERDEN, AUSSER AUF lcfimm
4518	cd $LOCAL_PWD
4519	if [[ $localhost = lcfimm ]]
4520	then
4521	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4522	else
4523	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4524	fi
4525	cd - > /dev/null
4526	fi
4527	printf "\n$striche\n *** restart-run initiated \n"
4528
4529
4530	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4531	# GEHOLT WORDEN SIND, LOESCHEN
4532	(( i = 0 ))
4533	while (( i < iin ))
4534	do
4535	(( i = i + 1 ))
4536	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4537	then
4538	rm -r $tmp_data_catalog/${frelin[$i]}
4539	fi
4540	done
4541
4542	else
4543
4544	printf "\n +++ no restart-run possible, since errors occured"
4545	printf "\n during the archive process"
4546	fi
4547
4548	fi
4549
4550
4551
4552	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4553	if [[ "$email_notification" != "none" ]]
4554	then
4555
4556	if [[ $localhost != $fromhost ]]
4557	then
4558	if [[ -f CONTINUE_RUN ]]
4559	then
4560	echo "PALM restart run necessary" > email_text
4561	echo "description header of actual run:" >> email_text
4562	cat CONTINUE_RUN >> email_text
4563	echo "mrun-command to restart:" >> email_text
4564	echo "$mc" >> email_text
4565	else
4566	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4567	fi
4568	mail $email_notification < email_text
4569	printf "\n *** email notification sent to \"$email_notification\" "
4570	fi
4571	fi
4572
4573
4574
4575	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4576	cd $HOME
4577	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4578
4579	else
4580
4581
4582	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4583	# CHENDE AKTIONEN DURCHGEFUEHRT
4584
4585	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4586	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4587	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4588	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4589	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4590	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4591	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4592	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4593	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4594	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4595	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4596	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4597	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4598	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4599	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4600	if [[ $use_openmp = true ]]
4601	then
4602	mrun_com=${mrun_com}" -O $threads_per_task"
4603	fi
4604	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4605	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4606	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4607	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4608	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4609	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4610	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4611	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4612	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4613	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4614	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4615	if [[ $do_remote = true ]]
4616	then
4617	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4618	fi
4619
4620
4621	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4622	jobfile=jobfile.$RANDOM
4623
4624
4625	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4626	echo "mkdir $TEMPDIR" >> $jobfile
4627	echo "cd $TEMPDIR" >> $jobfile
4628
4629
4630	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4631	if [[ $do_trace = true ]]
4632	then
4633	echo "set -x" >> $jobfile
4634	else
4635	echo "set +vx" >> $jobfile
4636	fi
4637
4638
4639	# initialize the environment and load modules
4640	if [[ "$init_cmds" != "" ]]
4641	then
4642	echo "$init_cmds" >> $jobfile
4643	fi
4644	if [[ "$module_calls" != "" ]]
4645	then
4646	echo "$module_calls" >> $jobfile
4647	fi
4648
4649
4650	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4651	# DATEI FUER DEN JOB
4652	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4653	then
4654
4655	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4656	# KOPIEREN
4657	if [[ $restart_run != true ]]
4658	then
4659	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4660	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4661	fi
4662
4663	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4664	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4665	echo "set -x" >> $jobfile
4666	if [[ $host = $localhost ]]
4667	then
4668	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4669	else
4670	if [[ $host != ibmkisti ]]
4671	then
4672	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4673	else
4674	# on KISTI's IBM firewall is only opened on interactive node
4675	echo "localdir=\`pwd\`" >> $jobfile
4676	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4677	fi
4678	fi
4679	echo "export SOURCES_COMPLETE=true" >> $jobfile
4680
4681	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4682	# ARBEITSVERZEICHNIS VERSCHIEBEN
4683	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4684	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4685	echo "execute_mrun=true" >> $jobfile
4686	echo " " >> $jobfile
4687
4688	else
4689
4690	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4691	# SOWIE GEGEBENENFALLS DES MAKEFILES
4692	if [[ $do_compile = true ]]
4693	then
4694
4695	source_catalog=SOURCES_FOR_RUN_$fname
4696
4697	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4698	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4699	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4700	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4701	echo "export SOURCES_COMPLETE=true" >> $jobfile
4702	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4703
4704	for filename in $source_list
4705	do
4706	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4707	echo "cat > $filename << \"%END%\"" >> $jobfile
4708	cat $source_catalog/$filename >> $jobfile
4709	echo " " >> $jobfile
4710	echo "%END%" >> $jobfile
4711	echo " " >> $jobfile
4712	done
4713
4714	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4715	echo "cat > Makefile << \"%END%\"" >> $jobfile
4716	cat $source_catalog/Makefile >> $jobfile
4717	echo " " >> $jobfile
4718	echo "%END%" >> $jobfile
4719	echo " " >> $jobfile
4720
4721	echo "cd - > /dev/null" >> $jobfile
4722
4723	fi
4724
4725
4726	# ABSPEICHERN DER KONFIGURATIONSDATEI
4727	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4728	echo "cat > $config_file << \"%END%\"" >> $jobfile
4729	cat $config_file >> $jobfile
4730	echo "%END%" >> $jobfile
4731	echo " " >> $jobfile
4732
4733
4734	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4735	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4736	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4737	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4738	echo "%END%" >> $jobfile
4739	echo "chmod u+x $mrun_script_name" >> $jobfile
4740	echo "execute_mrun=true" >> $jobfile
4741	echo " " >> $jobfile
4742
4743	fi
4744
4745
4746	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4747	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4748	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4749	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4750	if [[ $do_remote = true ]]
4751	then
4752	(( i = 0 ))
4753	while (( i < iin ))
4754	do
4755	(( i = i + 1 ))
4756	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4757	if [[ "${transin[$i]}" = job ]]
4758	then
4759	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4760	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4761	echo " " >> $jobfile
4762	echo "%END%" >> $jobfile
4763	else
4764	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4765	fi
4766
4767	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4768	echo "if [[ \$? = 1 ]]" >> $jobfile
4769	echo "then" >> $jobfile
4770	echo " echo \" \" " >> $jobfile
4771	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4772	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4773	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4774	echo " execute_mrun=false" >> $jobfile
4775	echo "fi" >> $jobfile
4776	done
4777	fi
4778
4779	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4780	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4781	echo "LOCAL_PWD=$working_directory" >> $jobfile
4782	echo "export LOCAL_PWD" >> $jobfile
4783
4784	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4785	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4786	echo "export LOCAL_MRUN_PATH" >> $jobfile
4787
4788	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4789	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4790	then
4791	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4792	fi
4793
4794	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4795	echo "set -x" >> $jobfile
4796	echo "queue=$queue" >> $jobfile
4797	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4798
4799	echo 'ls -al; echo `pwd`' >> $jobfile
4800	echo "cd \$HOME" >> $jobfile
4801	echo "rm -rf $TEMPDIR" >> $jobfile
4802
4803
4804
4805
4806	# JOB PER SUBJOB STARTEN
4807	if [[ $silent = false ]]
4808	then
4809	printf "\n "
4810	else
4811	printf "\n\n"
4812	fi
4813
4814	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4815	rm -rf $jobfile
4816
4817
4818	fi # ENDE REMOTE-TEIL
4819
4820
4821
4822	# ENDE DER PROZEDUR

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