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source: palm/trunk/SCRIPTS/mrun @ 738

Last change on this file since 738 was 738, checked in by raasch, 13 years ago
extension for impi library and adjustments for HLRN access
Property svn:keywords set to `Id Rev`
File size: 175.2 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 738 2011-08-17 14:51:23Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227
228
229
230	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
231
232	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
233	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
234	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
235
236	AddFilenames=""
237	additional_conditions=""
238	add_source_path=""
239	afname=""
240	archive_save=true
241	archive_system=none
242	compiler_name=""
243	cond1=""
244	cond2=""
245	config_file=.mrun.config
246	coupled_dist=""
247	coupled_mode="mpi1"
248	cpp_opts=""
249	cpp_options=""
250	cpumax=0
251	cpurest=0
252	delete_temporary_catalog=true
253	do_batch=false
254	do_compile=true
255	do_remote=false
256	do_stagein=true
257	do_stageout=true
258	do_trace=false
259	email_notification="none"
260	exclude=""
261	executable=""
262	execution_error=false
263	fimm=false
264	fname=test
265	fromhost=""
266	global_revision=""
267	group_number=none
268	host=""
269	host_file=""
270	hp=""
271	ignore_archive_error=false
272	input_list=""
273	interpreted_config_file=""
274	job_catalog="~/job_queue"
275	job_on_file=""
276	keep_data_from_previous_run=false
277	link_local_input=false
278	link_local_output=false
279	localhost_realname=$(hostname)
280	local_compile=false
281	local_dvrserver_running=.FALSE.
282	locat=normal
283	mainprog=""
284	makefile=""
285	mc=$0
286	while [[ $(echo $mc \| grep -c "/") != 0 ]]
287	do
288	mc=`echo $mc \| cut -f2- -d"/"`
289	done
290	module_calls=""
291	mrun_script_name=$mc
292	netcdf_inc=""
293	netcdf_lib=""
294	netcdf_support=false
295	node_usage=default
296	numprocs=""
297	numprocs_atmos=0
298	numprocs_ocean=0
299	OOPT=""
300	openmp=false
301	output_list=""
302	package_list=""
303	punkte="..........................................................."
304	queue=none
305	read_from_config=""
306	restart_run=false
307	if [[ `hostname` = rte10 ]]
308	then
309	return_addres=133.5.185.60
310	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
311	elif [[ `hostname` = climate0 ]]
312	then
313	return_addres=165.132.26.68
314	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
315	else
316	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
317	fi
318	return_password=""
319	return_username=$LOGNAME
320	remotecall=false
321	remote_username=""
322	run_coupled_model=false
323	run_mode=""
324	scirocco=false
325	store_on_archive_system=false
326	striche=" ----------------------------------------------------------------------------"
327	silent=false
328	source_list=""
329	source_path=SOURCE
330	tasks_per_node=""
331	threads_per_task=1
332	tmpcreate=false
333	tmp_data_catalog=""
334	transfer_problems=false
335	usern=$LOGNAME
336	use_openmp=false
337	working_directory=`pwd`
338	TOPT=""
339	XOPT=""
340	zeit=$( date \| cut -c 12-19 )
341
342	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
343	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
344
345	typeset -R30 calltime
346	typeset -L20 spalte1
347	typeset -L40 spalte2
348	typeset -L60 spalte3
349	typeset -L35 string1=`date`
350	typeset -L12 string2=$usern
351	typeset -L12 string3=$localhost_realname
352	typeset -L12 string4
353	typeset -L12 string5
354	typeset -L30 version="MRUN 2.0 Rev$Rev: 738 $"
355
356
357
358	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
359	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
360
361	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
362	# EXPORTIERT WERDEN
363	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
364	export group_number input_list memory numprocs output_list queue run_mode
365
366
367
368	# FEHLERBEHANDLUNG
369	# BEI EXIT:
370	trap 'rm -rf $working_directory/tmp_mrun
371	if [[ $locat != localhost ]]
372	then
373	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
374	# then
375	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
376	#MRUN-calls on $localhost
377	#
378	#date and time user localhost remotehost termination mrun-command
379	#--------------------------------------------------------------------------------------------------------------------
380	#%STATEND%
381	# chmod 666 ${mrun_path}/statistik/mrun_statistik
382	# fi
383	#
384	# # EINTRAG IN DIE STATISTIK-DATEI
385	# string4=$host
386	# string5=$locat
387	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
388	# then
389	# if [[ $do_batch = true ]]
390	# then
391	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
392	# else
393	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
394	# fi
395	# fi
396	echo " " > /dev/null
397	fi
398
399	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
400	then
401
402	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
403	(( i = 0 ))
404	while (( i < iec ))
405	do
406	(( i = i + 1 ))
407	printf "\n *** Execution of ERROR-command:\n"
408	printf " >>> ${err_command[$i]}\n"
409	eval ${err_command[$i]}
410	done
411	if [[ -n $interpreted_config_file ]] then
412	rm -rf $interpreted_config_file
413	fi
414	if [[ -n .mrun_environment ]] then
415	rm -rf .mrun_environment
416	fi
417	if [[ $tmpcreate = true ]]
418	then
419	printf "\n *** Contents of \"$TEMPDIR\":\n"
420	ls -al; cd
421	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
422	fi
423	if [[ "$dvrserver_id" != "" ]]
424	then
425	echo "+++ killing dvrserver_id=$dvrserver_id"
426	kill $dvrserver_id
427	fi
428	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
429	then
430	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
431	fi
432	printf "\n\n+++ MRUN killed \n\n"
433	elif [[ $locat != control_c ]]
434	then
435	printf "\n\n --> all actions finished\n\n"
436	printf " Bye, bye $usern !!\n\n"
437	fi' exit
438
439
440	# BEI TERMINAL-BREAK:
441	trap 'rm -rf $working_directory/tmp_mrun
442	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
443	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
444	then
445	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
446	fi
447	if [[ "$dvrserver_id" != "" ]]
448	then
449	echo "+++ killing dvrserver_id=$dvrserver_id"
450	kill $dvrserver_id
451	fi
452	printf "\n+++ MRUN killed by \"^C\" \n\n"
453	locat=control_c
454	exit
455	' 2
456
457
458	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
459	# BEEN SET
460	if [[ "$PALM_BIN" = "" ]]
461	then
462	printf "\n +++ environment variable PALM_BIN has not been set"
463	printf "\n please set it to the directory where the PALM scripts are located"
464	locat=palm_bin; exit
465	fi
466	export PATH=$PALM_BIN:$PATH
467
468
469
470	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
471	# FUER FOLGEJOBS BENOETIGT WIRD
472	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
473	do
474	case $option in
475	(a) afname=$OPTARG;;
476	(A) store_on_archive_system=true; mc="$mc -A";;
477	(b) do_batch=true; mc="$mc -b";;
478	(B) delete_temporary_catalog=false; mc="$mc -B";;
479	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
480	(C) restart_run=true; mc="$mc -C";;
481	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
482	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
483	(F) job_on_file="-D"; mc="$mc -F";;
484	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
485	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
486	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
487	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
488	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
489	(I) ignore_archive_error=true; mc="$mc -I";;
490	(k) keep_data_from_previous_run=true; mc="$mc -k";;
491	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
492	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
493	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
494	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
495	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
496	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
497	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
498	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
499	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
500	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
501	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
502	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
503	(S) read_from_config=false; mc="$mc -S";;
504	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
505	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
506	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
507	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
508	(v) silent=true; mc="$mc -v";;
509	(x) do_trace=true;set -x; mc="$mc -x";;
510	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
511	(y) ocean_file_appendix=true; mc="$mc -y";;
512	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
513	(\?) printf "\n +++ unknown option $OPTARG \n"
514	printf "\n --> type \"$0 ?\" for available options \n"
515	locat=parameter;exit;;
516	esac
517	done
518
519
520	# EVTL. POSITIONSPARAMETER EINLESEN
521	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
522	shift OPTIND-1
523
524
525	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
526	if [[ "$1" = "?" ]]
527	then
528	(printf "\n *** mrun can be called as follows:\n"
529	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
530	printf "\n Description of available options:\n"
531	printf "\n Option Description Default-Value"
532	printf "\n -a base name of input files equiv. -d"
533	printf "\n -A archiving when using file-attribute fl"
534	printf "\n -b batch-job on local machine ---"
535	printf "\n -B do not delete temporary directory at end ---"
536	printf "\n -c configuration file .mrun.config"
537	printf "\n -d base name of files attached to program test"
538	printf "\n -D preprocessor(cpp)-directives \"\" "
539	printf "\n -F create remote job file only ---"
540	printf "\n -h execution host $localhost_realname"
541	printf "\n -i INPUT control list \"\" "
542	printf "\n -I archiving errors of previous batch-jobs"
543	printf "\n will be ignored"
544	printf "\n -k keep data from previous run"
545	printf "\n -K additional conditions for controling"
546	printf "\n usage of conditional code and"
547	printf "\n env-variables in configuration file \"\" "
548	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
549	printf "\n -M Makefile name Makefile"
550	printf "\n -n node usage (shared/not_shared) depending on -h"
551	printf "\n -o OUTPUT control list \"\" "
552	printf "\n -O use OpenMP ---"
553	printf "\n -p software package list \"\" "
554	printf "\n -q queue \"$queue\" "
555	printf "\n -r run control list (combines -i -o) \"\" "
556	printf "\n -s filenames of routines to be compiled \"\" "
557	printf "\n must end with .f, .f90, .F, or .c !"
558	printf "\n use \"..\" for more than one file and wildcards"
559	printf "\n -s TEST compiles all files with w-permit"
560	printf "\n -S config file interpreted by shellscript ---"
561	printf "\n -t allowed cpu-time in seconds (batch) 0"
562	printf "\n -T tasks per node depending on -h"
563	printf "\n -u username on remote machine \"\" "
564	printf "\n -v no prompt for confirmation ---"
565	printf "\n -x tracing of mrun for debug purposes ---"
566	printf "\n -X # of processors (on parallel machines) 1"
567	printf "\n -y add appendix \"_O\" to all local output"
568	printf "\n files (ocean precursor runs followed by"
569	printf "\n coupled atmosphere-ocean runs) ---"
570	printf "\n -Y run coupled model, \"#1 #2\" with"
571	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
572	printf "\n "
573	printf "\n Possible values of positional parameter <modus>:"
574	printf "\n \"?\" - this outline \n\n") \| more
575	exit
576	elif [[ "$1" != "" ]]
577	then
578	printf "\n +++ positional parameter $1 unknown \n"
579	locat=parameter; exit
580	fi
581
582
583
584	# KURZE STARTMELDUNG
585	printf "\n*** $version "
586	printf "\n will be executed. Please wait ..."
587
588
589
590	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
591	if [[ ! -f $config_file ]]
592	then
593	printf "\n\n +++ configuration file: "
594	printf "\n $config_file"
595	printf "\n does not exist"
596	locat=connect; exit
597	fi
598
599
600	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
601	line=""
602	grep "%host_identifier" $config_file > tmp_mrun
603	while read line
604	do
605	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
606	then
607	HOSTNAME=`echo $line \| cut -d" " -s -f2`
608	host_identifier=`echo $line \| cut -d" " -s -f3`
609	if [[ $localhost_realname = $HOSTNAME ]]
610	then
611	localhost=$host_identifier
612	break
613	fi
614	fi
615	done < tmp_mrun
616
617	if [[ "$localhost" = "" ]]
618	then
619	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
620	printf "\n for local host \"$localhost_realname\"."
621	printf "\n Please add line"
622	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
623	printf "\n to the configuration file."
624	locat=localhost; exit
625	fi
626
627
628	# HOSTSPEZIFISCHE VARIABLEN SETZEN
629	case $localhost_realname in
630	(r1\|r2\|h01\|b01) archive_system=tivoli;;
631	(cs*) archive_system=ut;;
632	(fimm.bccs.uib.no) fimm=true;;
633	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
634	(scirocco) scirocco=true;;
635	esac
636
637
638
639	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
640	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
641	[[ "$afname" = "" ]] && afname=$fname
642
643
644	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
645	if [[ "$run_mode" != "" ]]
646	then
647	input_list="$input_list $run_mode"
648	output_list="$output_list $run_mode"
649	fi
650
651
652	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
653	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
654	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
655	# STARTET)
656	if [[ "$fromhost" = "" ]]
657	then
658	fromhost=$localhost
659	fi
660
661
662	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
663	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
664	then
665	source_list=TEST
666	local_compile=true
667	host=$localhost
668	fi
669
670
671	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
672	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
673	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
674	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
675	if [[ -n $host && "$host" != $localhost ]]
676	then
677	do_batch=true
678	do_remote=true
679	case $host in
680	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
681	(*) printf "\n"
682	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
683	printf "\n is not available"
684	locat=nqs; (( iec = 0 )); exit;;
685	esac
686	else
687	host=$localhost
688	fi
689
690
691	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
692	if [[ -n $additional_conditions ]]
693	then
694	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
695	cond1=`echo $additional_conditions \| cut -d" " -f1`
696	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
697	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
698	if [[ -n $dummy ]]
699	then
700	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
701	locat=options; exit
702	fi
703	block=_$cond1
704	[[ -n $cond2 ]] && block=${block}_$cond2
705	fi
706
707
708	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
709	if [[ $run_coupled_model = true ]]
710	then
711
712	if [[ -n $coupled_dist ]]
713	then
714
715	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
716	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
717
718	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
719	then
720
721	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
722	printf "\n PEs (total) : $numprocs"
723	printf "\n PEs (atmosphere): $numprocs_atmos"
724	printf "\n PEs (ocean) : $numprocs_ocean"
725	locat=coupling; exit
726
727	fi
728
729	else
730
731	(( numprocs_ocean = $numprocs / 2 ))
732	(( numprocs_atmos = $numprocs / 2 ))
733
734	fi
735	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
736
737	# GET coupled_mode FROM THE CONFIG FILE
738	line=""
739	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
740	while read line
741	do
742	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
743	then
744	coupled_mode="mpi2"
745	fi
746	done < tmp_mrun
747
748	fi
749
750
751	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
752	# ARCHIVIERUNG FEHLGESCHLAGEN IST
753	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
754	then
755	if [[ $ignore_archive_error = false ]]
756	then
757	printf "\n +++ data archiving of previous run failed"
758	printf "\n see directory \~/job_queue on remote machine"
759	locat=archive; exit
760	else
761	printf "\n +++ warning: data archiving in a previous run failed"
762	printf "\n MRUN continues, trying to get backup copy"
763	fi
764	fi
765
766
767
768	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
769	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
770	if [[ "$read_from_config" = false ]]
771	then
772
773	[[ $silent = false ]] && printf "\n Reading the configuration file... "
774	while read zeile
775	do
776	[[ $silent = false ]] && printf "."
777
778
779	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
780	# ERSETZEN
781	eval zeile=\"$zeile\"
782
783
784	# INTERPRETATION DER ZEILE
785	if [[ "$(echo $zeile)" = "" ]]
786	then
787	# LEERZEILE, KEINE AKTION
788	continue
789
790	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
791	then
792
793	# ZEILE IST KOMMENTARZEILE
794	true
795
796	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
797	then
798
799	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
800	zeile=$(echo $zeile \| cut -c2-)
801	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
802	var=`echo $zeile \| cut -d" " -f1`
803	value=`echo $zeile \| cut -d" " -s -f2`
804	for_host=`echo $zeile \| cut -d" " -s -f3`
805	for_cond1=`echo $zeile \| cut -d" " -s -f4`
806	for_cond2=`echo $zeile \| cut -d" " -s -f5`
807
808	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
809	then
810
811	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
812	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
813	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
814
815
816	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
817	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
818	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
819	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
820	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
821	# KONFIGURATIONSDATEI
822	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
823	then
824	eval $var=\$value
825
826	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
827	if [[ $do_trace = true ]]
828	then
829	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
830	fi
831	fi
832
833	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
834	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
835	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
836	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
837	if [[ $var = host ]]
838	then
839	if [[ -n $host && "$host" != $localhost ]]
840	then
841	do_batch=true
842	do_remote=true
843	case $host in
844	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
845	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
846	printf "\n is not available"
847	locat=nqs; exit;;
848	esac
849	else
850	host=$localhost
851	fi
852	fi
853
854	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
855	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
856	# DEN PROGRAMMEN BENOETIGT WERDEN
857	export $var
858	fi
859
860
861
862
863	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
864	then
865
866	# ZEILE DEFINIERT ERROR-KOMMANDO
867	(( iec = iec + 1 ))
868	zeile=$(echo $zeile \| cut -c4-)
869	err_command[$iec]="$zeile"
870
871	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
872	then
873
874	# ZEILE DEFINIERT INPUT-KOMMANDO
875	(( iic = iic + 1 ))
876	zeile=$(echo $zeile \| cut -c4-)
877	in_command[$iic]="$zeile"
878
879	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
880	then
881
882	# ZEILE DEFINIERT OUTPUT-KOMMANDO
883	(( ioc = ioc + 1 ))
884	zeile=$(echo $zeile \| cut -c4-)
885	out_command[$ioc]="$zeile"
886
887	else
888
889	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
890	# s2a: in/out - Feld
891	# s2b: loc - Feld (optional)
892	# s2c: tr/ar - Feld (optional)
893	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
894	s1=`echo $zeile \| cut -d" " -f1`
895	s2=`echo $zeile \| cut -d" " -s -f2`
896	s2a=$(echo $s2 \| cut -d":" -f1)
897	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
898	then
899	s2b=""
900	s2c=""
901	else
902	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
903	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
904	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
905	fi
906	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
907	s3=`echo $zeile \| cut -d" " -f3`
908	s4=`echo $zeile \| cut -d" " -s -f4`
909	s5=`echo $zeile \| cut -d" " -s -f5`
910	s6=`echo $zeile \| cut -d" " -s -f6`
911
912
913	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
914	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
915	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
916	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
917	# HANDEN SEIN MUSS (D.H. s2b = loc)
918	IFSALT="$IFS"; IFS="$IFS:"
919	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
920	then
921	found=false
922	for actual in $input_list
923	do
924	for formal in $s3
925	do
926	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
927	done
928	done
929	if [[ $found = true ]]
930	then
931	(( iin = iin + 1 ))
932	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
933	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
934	extin[$iin]=$s6
935	fi
936	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
937	then
938	found=false
939	for actual in $output_list
940	do
941	for formal in $s3
942	do
943	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
944	done
945	done
946	if [[ $found = true ]]
947	then
948	(( iout = iout + 1 ))
949	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
950	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
951	fi
952	elif [[ "$s2a" != in && "$s2a" != out ]]
953	then
954	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
955	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
956	locat=connect; exit
957	fi
958	IFS="$IFSALT"
959	fi
960	done < $config_file
961
962	else
963
964
965	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
966	[[ $silent = false ]] && printf "..."
967	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
968	export interpreted_config_file=.icf.$RANDOM
969
970
971
972	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
973	# VERFUEGUNG STELLEN
974	cat > .mrun_environment << %%END%%
975	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
976	config_file = '$config_file', do_remote = '$do_remote',
977	do_trace = '$do_trace', host = '$host',
978	input_list = '$input_list', icf = '$interpreted_config_file',
979	localhost = '$localhost', output_list = '$output_list' /
980
981	%%END%%
982
983	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
984	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
985	mrun_memory=$memory
986	mrun_group_number=$group_number
987	mrun_cpumax=$cpumax
988	mrun_numprocs=$numprocs
989
990	if [[ $localhost_realname = "sx-fep" ]]
991	then
992	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
993	else
994
995	if [[ "$host" != $localhost ]]
996	then
997
998	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
999	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1000	if [[ $? != 0 ]]
1001	then
1002	printf "\n\n +++ no interpret_config found"
1003	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1004	locat=interpret_config; exit
1005	fi
1006	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1007	$interpret_config_executable
1008
1009	else
1010
1011	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1012	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1013	then
1014	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1015	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1016	locat=interpret_config; exit
1017	else
1018	interpret_config${block}.x
1019	fi
1020
1021	fi
1022	fi
1023	rm .mrun_environment
1024
1025
1026	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1027	chmod u+x $interpreted_config_file
1028	export PATH=$PATH:.
1029	. $interpreted_config_file
1030	rm $interpreted_config_file
1031
1032
1033	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1034	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1035	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1036	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1037	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1038
1039	fi
1040
1041
1042	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1043	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1044	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1045	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1046	if [[ "$SOURCES_COMPLETE" = "" ]]
1047	then
1048
1049	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1050	# VEREINBART WURDE
1051	source_path=""
1052	line=""
1053	grep "%source_path" $config_file > tmp_mrun
1054	while read line
1055	do
1056	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1057	then
1058	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1059	then
1060	global_source_path=`echo $line \| cut -d" " -f2`
1061	fi
1062	fi
1063	done < tmp_mrun
1064
1065	line=""
1066	found=false
1067	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1068	while read line
1069	do
1070	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1071	then
1072	if [[ $found = true ]]
1073	then
1074	printf "\n\n +++ more than one source path found in configuration file"
1075	printf "\n for local host \"$localhost\" "
1076	locat=source_path; exit
1077	fi
1078	source_path=`echo $line \| cut -d" " -f2`
1079	found=true
1080	fi
1081	done < tmp_mrun
1082	rm tmp_mrun
1083
1084	if [[ "$source_path" = "" ]]
1085	then
1086	if [[ "$global_source_path" != "" ]]
1087	then
1088	source_path=$global_source_path
1089	else
1090	printf "\n\n +++ no source path found in configuration file"
1091	printf "\n for local host \"$localhost\" "
1092	locat=source_path; exit
1093	fi
1094	fi
1095	eval source_path=$source_path
1096
1097	if [[ ! -d $source_path ]]
1098	then
1099	printf "\n\n +++ source path \"$source_path\" on local host"
1100	printf "\n \"$localhost\" does not exist"
1101	locat=source_path; exit
1102	fi
1103
1104	fi
1105
1106
1107	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1108	# DURCH OPTION -G MITGETEILT)
1109	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1110	then
1111	global_revision=`svnversion $source_path 2>/dev/null`
1112	global_revision="Rev: $global_revision"
1113	fi
1114
1115
1116	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1117	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1118	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1119	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1120	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1121	if [[ -n $host && "$host" != $localhost ]]
1122	then
1123	do_batch=true
1124	do_remote=true
1125	case $host in
1126	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1127	(*) printf "\n"
1128	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1129	printf "\n is not available"
1130	locat=nqs; (( iec = 0 )); exit;;
1131	esac
1132	else
1133	host=$localhost
1134	fi
1135
1136
1137	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1138	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1139	then
1140
1141	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1142	if [[ ! -n $numprocs ]]
1143	then
1144	printf "\n"
1145	printf "\n +++ option \"-K parallel\" requires additional specification"
1146	printf "\n of the number of processors to be used by"
1147	printf "\n mrun-option \"-X\" or by environment-variable"
1148	printf "\n \"numprocs\" in the configuration file"
1149	locat=numprocs; (( iec = 0 )); exit
1150	fi
1151
1152	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1153	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1154	# GESAMTPROZESSORANZAHL IST
1155	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmkisti \|\| $host = ibms ]]
1156	then
1157	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1158	(( ival = $tasks_per_node ))
1159	(( pes = numprocs ))
1160	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1161	# then
1162	# (( pes = pes - 1 ))
1163	# fi
1164	(( ii = pes / ival ))
1165	if (( pes - ii * ival > 0 ))
1166	then
1167	printf "\n"
1168	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1169	printf "\n divisor of the total number of processors (option \"-X\")"
1170	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1171	locat=tasks_per_node; (( iec = 0 )); exit
1172	fi
1173	fi
1174
1175	# IBMY HAT NUR EINEN KNOTEN
1176	if [[ $host = ibmy ]]
1177	then
1178	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1179	then
1180	printf "\n"
1181	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1182	printf "\n total number of processors (option \"-X\")"
1183	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1184	locat=tasks_per_node; (( iec = 0 )); exit
1185	fi
1186	fi
1187
1188	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1189	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1190	# if [[ $use_openmp = true ]]
1191	# then
1192	# threads_per_task=$tasks_per_node
1193	# tasks_per_node=1
1194	# fi
1195
1196	# SETTINGS FOR SUBJOB-COMMAND
1197	TOPT="-T $tasks_per_node"
1198	OOPT="-O $threads_per_task"
1199
1200	# GESAMTZAHL DER KNOTEN BESTIMMEN
1201	if [[ "$tasks_per_node" != "" ]]
1202	then
1203	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1204	fi
1205
1206	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1207	# SETZEN
1208	if [[ $node_usage = default ]]
1209	then
1210	if [[ $host = ibms ]]
1211	then
1212	node_usage=shared
1213	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1214	then
1215	node_usage=singlejob
1216	else
1217	node_usage=not_shared
1218	fi
1219	fi
1220
1221	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1222	then
1223	printf "\n"
1224	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1225	printf "\n \"shared\" or \"not_shared\""
1226	locat=tasks_per_node; (( iec = 0 )); exit
1227	fi
1228
1229	fi
1230
1231	# PRUEFEN, OB HOSTFILE EXISTIERT
1232	if [[ -n $hostfile ]]
1233	then
1234	if [[ ! -f $hostfile ]]
1235	then
1236	printf "\n"
1237	printf "\n +++ hostfile \"$hostfile\" does not exist"
1238	locat=hostfile; exit
1239	fi
1240	fi
1241
1242	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1243	if [[ $host = ibmy && $do_remote = false ]]
1244	then
1245	if [[ ! -f $HOME/.rhosts ]]
1246	then
1247	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1248	printf "\n\n *** file:"
1249	printf "\n $HOME/.rhosts"
1250	printf "\n was created\n"
1251	fi
1252	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1253	then
1254	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1255	printf "\n\n *** file:"
1256	printf "\n $HOME/.rhosts"
1257	printf "\n was extended by the name of the current host\n"
1258	fi
1259	fi
1260
1261
1262
1263	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1264	if [[ $queue = none ]]
1265	then
1266	case $host in
1267	(ibmh) queue=no_class;;
1268	(ibmkisti) queue=class.32plus;;
1269	(ibmy) queue=parallel;;
1270	(lckyoto) queue=ph;;
1271	(lcsgib) queue=bigq;;
1272	(lcsgih) queue=bigq;;
1273	(lctit) queue=S;;
1274	(nech) queue=none;;
1275	(necriam) queue=SP;;
1276	(unics) queue=unics;;
1277	esac
1278	fi
1279
1280
1281	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1282	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1283	# ERMITTELN
1284	(( i = 0 ))
1285	while (( i < iin ))
1286	do
1287	(( i = i + 1 ))
1288	(( maxcycle = 0 ))
1289
1290	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1291	if [[ "${actionin[$i]}" = di ]]
1292	then
1293	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1294	# REM-MASCHINE AUSWERTEN
1295	eval filename=${pathin[$i]}/${endin[$i]}
1296	else
1297	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1298	# REM-MASCHINE AUSWERTEN
1299	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1300	fi
1301
1302	# PRUEFEN AUF VORHANDENSEIN
1303	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1304	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1305	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1306	then
1307	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1308	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1309	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1310	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1311	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1312	if [[ "${transin[$i]}" != "locopt" ]]
1313	then
1314	printf "\n\n +++ INPUT-file: "
1315	if [[ "${extin[$i]}" = "" ]]
1316	then
1317	printf "\n $filename"
1318	else
1319	printf "\n $filename.${extin[$i]}"
1320	fi
1321	printf "\n does not exist\n"
1322	locat=input; exit
1323	else
1324	transin[$i]="unavailable"
1325	fi
1326	else
1327
1328	# ZYKLUSNUMMER FESTSTELLEN
1329	ls -1 -d $filename > filelist 2>/dev/null
1330	ls -1 -d $filename.* >> filelist 2>/dev/null
1331	while read zeile
1332	do
1333	cycle=$(print $zeile \| cut -f2 -d".")
1334	if [[ "$cycle" = "$zeile" ]]
1335	then
1336	(( icycle = 0 ))
1337	elif [[ "$cycle" = "${extin[$i]}" ]]
1338	then
1339	(( icycle = 0 ))
1340	else
1341	(( icycle = $cycle ))
1342	fi
1343	if (( icycle > maxcycle ))
1344	then
1345	(( maxcycle = icycle ))
1346	file_to_be_used=$zeile
1347	fi
1348	done <filelist
1349	rm filelist
1350
1351	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1352	if (( maxcycle > 0 ))
1353	then
1354	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1355	then
1356	filename=${filename}.$maxcycle.${extin[$i]}
1357	else
1358	filename=${filename}.$maxcycle
1359	fi
1360	else
1361	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1362	then
1363	filename=${filename}.${extin[$i]}
1364	fi
1365	fi
1366
1367	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1368	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1369	absnamein[$i]=$filename
1370	if (( maxcycle > 0 ))
1371	then
1372	if [[ "${actionin[$i]}" = di ]]
1373	then
1374	frelin[$i]=${endin[$i]}.$maxcycle
1375	else
1376	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1377	fi
1378	else
1379	if [[ "${actionin[$i]}" = di ]]
1380	then
1381	frelin[$i]=${endin[$i]}
1382	else
1383	frelin[$i]=${afname}${endin[$i]}
1384	fi
1385	fi
1386
1387	fi
1388	done
1389
1390
1391	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1392	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1393	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1394	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1395	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1396	(( i = 0 ))
1397	while (( i < iout ))
1398	do
1399	(( i = i + 1 ))
1400	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1401	then
1402	if [[ "${actionout[$i]}" = tr ]]
1403	then
1404	actionout[$i]=""
1405	elif [[ "${actionout[$i]}" = trpe ]]
1406	then
1407	actionout[$i]=pe
1408	elif [[ "${actionout[$i]}" = tra ]]
1409	then
1410	actionout[$i]=a
1411	fi
1412	(( maxcycle = 0 ))
1413	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1414	eval catalogname=${pathout[$i]}
1415	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1416	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1417	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1418	then
1419
1420	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1421	if cat /dev/null > $filename
1422	then
1423	rm $filename
1424	else
1425
1426	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1427	if [[ ! -d $catalogname ]]
1428	then
1429	if mkdir -p $catalogname
1430	then
1431	printf "\n\n *** directory:"
1432	printf "\n $catalogname"
1433	printf "\n was created\n"
1434	else
1435	printf "\n\n +++ OUTPUT-file:"
1436	printf "\n $filename"
1437	printf "\n cannot be created, because directory does not exist"
1438	printf "\n and cannot be created either"
1439	printf "\n"
1440	locat=output ; exit
1441	fi 2>/dev/null
1442	else
1443	printf "\n\n +++ OUTPUT-file:"
1444	printf "\n $filename"
1445	printf "\n cannot be created, although directory exists"
1446	printf "\n"
1447	locat=output ; exit
1448	fi
1449	fi 2>/dev/null
1450	else
1451
1452	# ZYKLUSNUMMER FESTSTELLEN
1453	ls -1 -d $filename > filelist 2>/dev/null
1454	ls -1 -d $filename.* >> filelist 2>/dev/null
1455	while read zeile
1456	do
1457	cycle=$(print $zeile \| cut -f2 -d".")
1458	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1459	then
1460	(( icycle = 1 ))
1461	else
1462	(( icycle = $cycle + 1 ))
1463	fi
1464	if (( icycle > maxcycle ))
1465	then
1466	(( maxcycle = icycle ))
1467	fi
1468	done <filelist
1469	rm filelist
1470	fi
1471
1472	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1473	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1474	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1475	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1476	if [[ "${actionout[$i]}" != a ]]
1477	then
1478	if (( maxcycle > 0 ))
1479	then
1480	filename=${filename}.$maxcycle
1481	if cat /dev/null > $filename
1482	then
1483	rm $filename
1484	else
1485	printf "\n +++ OUTPUT-file:"
1486	printf "\n $filename"
1487	printf "\n cannot be created"
1488	locat=output ; exit
1489	fi
1490	fi
1491	else
1492	(( maxcycle = maxcycle - 1 ))
1493	if (( maxcycle > 0 ))
1494	then
1495	filename=${filename}.$maxcycle
1496	fi
1497	fi
1498
1499	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1500	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1501	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1502	pathout[$i]=$filename
1503	if (( maxcycle > 0 ))
1504	then
1505	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1506	else
1507	frelout[$i]=${fname}${endout[$i]}
1508	fi
1509
1510	fi
1511	done
1512
1513
1514	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1515	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1516	then
1517	if [[ "$dvr_inc" = "" ]]
1518	then
1519	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1520	printf "\n This is required for the dvrp_graphics package.\n"
1521	locat=dvr; exit
1522	fi
1523	if [[ "$dvr_lib" = "" ]]
1524	then
1525	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1526	printf "\n This is required for the dvrp_graphics package.\n"
1527	locat=dvr; exit
1528	fi
1529	fi
1530
1531
1532	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1533	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1534	# UEBERSETZT ZU WERDEN)
1535	if [[ "$mainprog" = "" && "$executable" = "" ]]
1536	then
1537	printf "\n +++ neither main program nor executable defined"
1538	locat=source; exit
1539	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1540	then
1541	printf "\n +++ main program as well as executable defined"
1542	locat=source; exit
1543	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1544	then
1545	do_compile=false
1546	fi
1547
1548
1549	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1550	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1551	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1552	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1553	then
1554	rm -rf SOURCES_FOR_RUN_$fname
1555	mkdir SOURCES_FOR_RUN_$fname
1556	fi
1557
1558
1559	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1560	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1561	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1562	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1563	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1564	then
1565
1566	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1567	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1568
1569
1570	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1571	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1572	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1573	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1574	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1575	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1576	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1577	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1578	# GESAMMELT
1579	if [[ "$source_list" = WRITE_PERMIT ]]
1580	then
1581
1582	source_list=""
1583	cd $source_path
1584
1585
1586	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1587	Names=$(ls -1 *.f90 2>&1)
1588	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1589	Names=$(ls -1 *.F90 2>&1)
1590	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1591	Names=$(ls -1 *.F 2>&1)
1592	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1593	Names=$(ls -1 *.f 2>&1)
1594	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1595	Names=$(ls -1 *.c 2>&1)
1596	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1597
1598
1599	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1600	for dateiname in $Filenames
1601	do
1602	if [[ -w $dateiname ]]
1603	then
1604	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1605	then
1606	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1607	source_list=$source_list"$dateiname "
1608	fi
1609	fi
1610	done
1611
1612	cd - > /dev/null
1613
1614
1615	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1616	then
1617
1618	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1619	source_list=""
1620	cd $source_path
1621
1622
1623	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1624	if [[ ! -d .svn ]]
1625	then
1626	printf "\n\n +++ source directory"
1627	printf "\n \"$source_path\" "
1628	printf "\n is not under control of \"subversion\"."
1629	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1630	fi
1631
1632
1633	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1634	Filenames=""
1635	svn status > tmp_mrun
1636	while read line
1637	do
1638	firstc=`echo $line \| cut -c1`
1639	if [[ $firstc = M \|\| $firstc = "?" ]]
1640	then
1641	Name=`echo "$line" \| cut -c8-`
1642	extension=`echo $Name \| cut -d. -f2`
1643	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1644	then
1645	Filenames="$Filenames "$Name
1646	fi
1647	fi
1648	done < tmp_mrun
1649
1650
1651	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1652	for dateiname in $Filenames
1653	do
1654	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1655	source_list=$source_list"$dateiname "
1656	done
1657
1658	cd - > /dev/null
1659
1660
1661	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1662	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1663	# VORHANDEN
1664	elif [[ "$source_list" != "" && $restart_run != true ]]
1665	then
1666
1667	cd $source_path
1668
1669	for filename in $source_list
1670	do
1671
1672	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1673	if [[ $(print $filename \| grep -c "/") != 0 ]]
1674	then
1675	printf "\n +++ source code file: $filename"
1676	printf "\n must not contain (\"/\") "
1677	locat=source; exit
1678	fi
1679
1680	if [[ ! -f $filename ]]
1681	then
1682	printf "\n +++ source code file: $filename"
1683	printf "\n does not exist"
1684	locat=source; exit
1685	else
1686	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1687	fi
1688
1689	done
1690
1691	cd - > /dev/null
1692
1693	fi
1694
1695
1696	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1697	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1698	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1699	if [[ $restart_run != true ]]
1700	then
1701
1702	if [[ ! -f "$source_path/$mainprog" ]]
1703	then
1704	printf "\n\n +++ main program: $mainprog"
1705	printf "\n does not exist in source directory"
1706	printf "\n \"$source_path\"\n"
1707	locat=source; exit
1708	else
1709	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1710	then
1711	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1712	source_list=${mainprog}" $source_list"
1713	fi
1714	fi
1715	fi
1716
1717
1718	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1719	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1720	if [[ "$restart_run" != true ]]
1721	then
1722	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1723	if [[ ! -f $makefile ]]
1724	then
1725	printf "\n +++ file \"$makefile\" does not exist"
1726	locat=make; exit
1727	else
1728	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1729	fi
1730	fi
1731
1732
1733	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1734	if [[ $restart_run != true && "$add_source_path" != "" ]]
1735	then
1736
1737	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1738	if [[ ! -d $add_source_path ]]
1739	then
1740	printf "\n\n +++ WARNING: additional source code directory"
1741	printf "\n \"$add_source_path\" "
1742	printf "\n does not exist or is not a directory."
1743	printf "\n No source code will be used from this directory!\n"
1744	add_source_path=""
1745	sleep 3
1746	else
1747
1748	cd $add_source_path
1749	found=false
1750
1751	Names=$(ls -1 *.f90 2>&1)
1752	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1753	Names=$(ls -1 *.F90 2>&1)
1754	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1755	Names=$(ls -1 *.F 2>&1)
1756	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1757	Names=$(ls -1 *.f 2>&1)
1758	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1759	Names=$(ls -1 *.c 2>&1)
1760	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1761
1762	cd - > /dev/null
1763	cd SOURCES_FOR_RUN_$fname
1764
1765	# COPY MAKEFILE IF EXISTING
1766	if [[ -f $add_source_path/Makefile ]]
1767	then
1768	printf "\n\n *** user Makefile from directory"
1769	printf "\n \"$add_source_path\" is used \n"
1770	sleep 1
1771	cp $add_source_path/Makefile .
1772	fi
1773
1774	for dateiname in $AddFilenames
1775	do
1776	if [[ -f $dateiname ]]
1777	then
1778	printf "\n +++ source code file \"$dateiname\" found in additional"
1779	printf "\n source code directory \"$add_source_path\" "
1780	printf "\n but was also given with option \"-s\" which means that it should be taken"
1781	printf "\n from directory \"$source_path\"."
1782	locat=source; exit
1783	fi
1784
1785	cp $add_source_path/$dateiname .
1786	source_list="$source_list $dateiname"
1787
1788	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1789	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1790	then
1791	printf "\n\n +++ user file \"$dateiname\" "
1792	printf "\n is not listed in Makefile \n"
1793	locat=source; exit
1794	else
1795
1796	# Default User-Interface von der Liste entfernen, falls Datei
1797	# ein User-Interface enthaelt
1798	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1799	# then
1800	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1801	# then
1802	# rm -rf user_interface.f90
1803	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1804	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1805	# printf "\n since a user-interface is found in file"
1806	# printf "\n \"$add_source_path/$dateiname\" \n"
1807	# sleep 3
1808	# else
1809	if [[ $found = false ]]
1810	then
1811	found=true
1812	printf "\n\n *** following user file(s) added to the"
1813	printf " files to be translated:\n "
1814	fi
1815	printf "$dateiname "
1816	sleep 0.5
1817	fi
1818	done
1819	[[ $found = true ]] && printf "\n"
1820	cd - > /dev/null
1821	fi
1822	fi
1823
1824
1825	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1826	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1827	if [[ $restart_run != true && -n $package_list ]]
1828	then
1829
1830	cd $source_path
1831
1832	for package in $package_list
1833	do
1834
1835	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1836
1837	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1838	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1839	# LIEFERT
1840	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1841
1842
1843	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1844	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1845	for source_list_name in $package_source_list
1846	do
1847	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1848	then
1849
1850	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1851	ending=`echo $source_list_name \| cut -f2 -d.`
1852	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1853	then
1854	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1855	source_list="$source_list $source_list_name"
1856	fi
1857	fi
1858	done
1859	done
1860
1861	cd - > /dev/null
1862	fi
1863
1864
1865	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1866	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1867	# if [[ "$restart_run" != true ]]
1868	# then
1869	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1870	# if [[ ! -f $makefile ]]
1871	# then
1872	# printf "\n +++ file \"$makefile\" does not exist"
1873	# locat=make; exit
1874	# else
1875	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1876	# fi
1877	# fi
1878
1879	fi # do_compile=true
1880
1881
1882	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1883	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1884	if [[ $do_compile = true ]]
1885	then
1886
1887	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1888	# ZUSAMMENSETZEN
1889	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1890	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1891	then
1892	cpp_options="${cpp_options},-D__ibm=__ibm"
1893	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1894	then
1895	cpp_options="$cpp_options -D__nec"
1896	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1897	then
1898	cpp_options="$cpp_options -D__lc"
1899	else
1900	cpp_options="$cpp_options -D__$localhost"
1901	fi
1902
1903	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1904	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1905	then
1906	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1907	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1908	else
1909	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1910	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1911	fi
1912
1913	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1914	if [[ -n $package_list ]]
1915	then
1916	for package in $package_list
1917	do
1918	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1919	then
1920	if [[ $package != "dvrp_graphics+1PE" ]]
1921	then
1922	cpp_options="${cpp_options},-D__$package=__$package"
1923	else
1924	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1925	export use_seperate_pe_for_dvrp_output=true
1926	fi
1927	else
1928	if [[ $package != "dvrp_graphics+1PE" ]]
1929	then
1930	cpp_options="$cpp_options -D__$package"
1931	else
1932	cpp_options="$cpp_options -D__dvrp_graphics"
1933	export use_seperate_pe_for_dvrp_output=true
1934	fi
1935	fi
1936	done
1937	fi
1938
1939	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1940	if [[ -n $cpp_opts ]]
1941	then
1942	for popts in $cpp_opts
1943	do
1944	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1945	then
1946	cpp_options="${cpp_options},-D__$popts=__$popts"
1947	else
1948	cpp_options="$cpp_options -D__$popts"
1949	fi
1950	done
1951	fi
1952
1953	else
1954
1955
1956	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1957	if [[ $do_remote = false ]]
1958	then
1959	if [[ ! -f $executable ]]
1960	then
1961	printf "\n +++ executable file: $executable"
1962	printf "\n does not exist"
1963	locat=executable; exit
1964	fi
1965	fi
1966	fi
1967
1968
1969	# JOBMODUS FESTSTELLEN
1970	if [[ "$ENVIRONMENT" = BATCH ]]
1971	then
1972	jobmo=BATCH
1973	else
1974	jobmo=INTERACTIVE
1975	fi
1976
1977
1978	# no interactive runs on lctit
1979	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1980	then
1981	printf "\n +++ no interactive runs allowed on host \"$host\" "
1982	printf "\n please submit batch job using mrun option \"-b\" \n"
1983	locat=normal; exit
1984	fi
1985
1986
1987	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1988	# DURCH BENUTZER ANDERWEITIG VEREINBART
1989	if [[ "$compiler_name" = "" ]]
1990	then
1991
1992	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1993	locat=compiler_name; exit
1994
1995	fi
1996
1997
1998	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1999	[[ $localhost = necriam ]] && compiler_name=mpif90
2000
2001
2002
2003	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2004	kennung=$RANDOM
2005	if [[ "$tmp_user_catalog" = "" ]]
2006	then
2007	if [[ $localhost = ibmh ]]
2008	then
2009	tmp_user_catalog=$SCRATCH
2010	elif [[ $localhost = nech ]]
2011	then
2012	tmp_user_catalog=$WRKSHR
2013	else
2014	tmp_user_catalog=/tmp
2015	fi
2016	fi
2017	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2018
2019
2020	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2021	# BESTIMMEN
2022	if [[ "$tmp_data_catalog" = "" ]]
2023	then
2024	if [[ $localhost = nech ]]
2025	then
2026	tmp_data_catalog=$WRKSHR/mrun_restart_data
2027	else
2028	tmp_data_catalog=/tmp/mrun_restart_data
2029	fi
2030	fi
2031
2032
2033	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2034	# ERSETZEN
2035	if [[ $do_remote = false && $do_compile = true ]]
2036	then
2037	eval fopts=\"$fopts\"
2038	eval lopts=\"$lopts\"
2039	fi
2040
2041
2042
2043	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2044	fopts="$fopts $netcdf_inc $dvr_inc"
2045	lopts="$lopts $netcdf_lib $dvr_lib"
2046	ROPTS="$ropts"
2047	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2048	then
2049	XOPT="-X $numprocs"
2050	fi
2051
2052
2053
2054	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2055	# GRAMM BENOETIGT
2056	done=false
2057	while [[ $done = false ]]
2058	do
2059	cputime=$cpumax
2060	if (( $cputime == 0 ))
2061	then
2062	if [[ $do_batch = true ]]
2063	then
2064	printf "\n +++ cpu-time is undefined"
2065	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2066	printf "\n >>> "
2067	read cputime 1>/dev/null 2>&1
2068	else
2069	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2070	fi
2071	else
2072	done=true
2073	fi
2074	cpumax=$cputime
2075	done
2076
2077	(( minuten = cputime / 60 ))
2078	(( sekunden = cputime - minuten * 60 ))
2079
2080
2081	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2082	if [[ $do_batch = true ]]
2083	then
2084	done=false
2085	while [[ $done = false ]]
2086	do
2087	if (( memory == 0 ))
2088	then
2089	printf "\n +++ memory demand is undefined"
2090	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2091	printf "\n >>> "
2092	read memory 1>/dev/null 2>&1
2093	else
2094	done=true
2095	fi
2096	done
2097	fi
2098
2099
2100	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2101	if [[ $do_remote = true && -z $remote_username ]]
2102	then
2103	while [[ -z $remote_username ]]
2104	do
2105	printf "\n +++ username on remote host \"$host\" is undefined"
2106	printf "\n >>> Please type username:"
2107	printf "\n >>> "
2108	read remote_username
2109	done
2110	mc="$mc -u$remote_username"
2111	fi
2112
2113
2114	# set module load command and export for subjob
2115	if [[ "$modules" != "" ]]
2116	then
2117	if [[ $host = lctit ]]
2118	then
2119	export module_calls=". $modules"
2120	else
2121	export module_calls="module load ${modules};"
2122	fi
2123	fi
2124
2125	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2126	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2127	then
2128	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2129	then
2130	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2131	fi
2132	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2133	# then
2134	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2135	# echo "*** module_calls = $module_calls"
2136	# fi
2137	fi
2138
2139
2140	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2141	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2142	then
2143	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2144	then
2145	mpilib=mpt
2146	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2147	then
2148	mpilib=mvapich
2149	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2150	then
2151	mpilib=impi
2152	fi
2153	fi
2154
2155
2156
2157	###########################################################################
2158	# HEADER-AUSGABE
2159	###########################################################################
2160
2161
2162	calltime=$(date)
2163	printf "\n"
2164	# [[ $silent = false ]] && clear
2165	printf "#--------------------------------------------------------------# \n"
2166	printf "\| $version$calltime \| \n"
2167	printf "\| \| \n"
2168	spalte1="called on:"; spalte2=$localhost_realname
2169	printf "\| $spalte1$spalte2 \| \n"
2170	if [[ $local_compile = false ]]
2171	then
2172	if [[ $do_remote = true ]]
2173	then
2174	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2175	else
2176	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2177	fi
2178	else
2179	spalte1="compiling test only!"; spalte2=""
2180	fi
2181	printf "\| $spalte1$spalte2 \| \n"
2182	if [[ -n $numprocs ]]
2183	then
2184	spalte1="number of PEs:"; spalte2=$numprocs
2185	printf "\| $spalte1$spalte2 \| \n"
2186	fi
2187	if [[ -n $tasks_per_node ]]
2188	then
2189	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2190	printf "\| $spalte1$spalte2 \| \n"
2191	fi
2192	if [[ $use_openmp = true ]]
2193	then
2194	spalte1="threads per task:"; spalte2="$threads_per_task"
2195	printf "\| $spalte1$spalte2 \| \n"
2196	fi
2197	printf "\| \| \n"
2198	if [[ $do_compile = true ]]
2199	then
2200	if [[ "$mopts" != "" ]]
2201	then
2202	spalte1="make options:"; spalte2=$mopts
2203	printf "\| $spalte1$spalte2 \| \n"
2204	zeile=$(echo "$mopts" \| cut -c41-)
2205	while [[ "$zeile" != "" ]]
2206	do
2207	spalte1=""
2208	spalte2=$zeile
2209	printf "\| $spalte1$spalte2 \| \n"
2210	zeile=$(echo "$zeile" \| cut -c41-)
2211	done
2212	fi
2213
2214	spalte1="cpp directives:"; spalte2=$cpp_options
2215	printf "\| $spalte1$spalte2 \| \n"
2216	zeile=$(echo "$cpp_options" \| cut -c41-)
2217	while [[ "$zeile" != "" ]]
2218	do
2219	spalte1=""
2220	spalte2=$zeile
2221	printf "\| $spalte1$spalte2 \| \n"
2222	zeile=$(echo "$zeile" \| cut -c41-)
2223	done
2224
2225	spalte1="compiler options:"; spalte2="$fopts"
2226	printf "\| $spalte1$spalte2 \| \n"
2227	zeile=$(echo "$fopts" \| cut -c41-)
2228	while [[ "$zeile" != "" ]]
2229	do
2230	spalte1=""
2231	spalte2=$zeile
2232	printf "\| $spalte1$spalte2 \| \n"
2233	zeile=$(echo "$zeile" \| cut -c41-)
2234	done
2235
2236	spalte1="linker options:"; spalte2=$lopts
2237	printf "\| $spalte1$spalte2 \| \n"
2238	zeile=$(echo "$lopts" \| cut -c41-)
2239	while [[ "$zeile" != "" ]]
2240	do
2241	spalte1=""
2242	spalte2=$zeile
2243	printf "\| $spalte1$spalte2 \| \n"
2244	zeile=$(echo "$zeile" \| cut -c41-)
2245	done
2246
2247	spalte1="modules to be load:"; spalte2=$modules
2248	printf "\| $spalte1$spalte2 \| \n"
2249	zeile=$(echo "$modules" \| cut -c41-)
2250	while [[ "$zeile" != "" ]]
2251	do
2252	spalte1=""
2253	spalte2=$zeile
2254	printf "\| $spalte1$spalte2 \| \n"
2255	zeile=$(echo "$zeile" \| cut -c41-)
2256	done
2257
2258	spalte1="main program":; spalte2=$mainprog
2259	printf "\| $spalte1$spalte2 \| \n"
2260	else
2261	spalte1=executable:; spalte2=$executable
2262	printf "\| $spalte1$spalte2 \| \n"
2263	fi
2264	printf "\| \| \n"
2265	spalte1="base name of files":; spalte2=$fname
2266	printf "\| $spalte1$spalte2 \| \n"
2267	if [[ $fname != $afname ]]
2268	then
2269	spalte1="base name of input files":; spalte2=$afname
2270	printf "\| $spalte1$spalte2 \| \n"
2271	fi
2272	spalte1="INPUT control list":; spalte2=$input_list
2273	printf "\| $spalte1$spalte2 \| \n"
2274	spalte1="OUTPUT control list":; spalte2=$output_list
2275	printf "\| $spalte1$spalte2 \| \n"
2276
2277	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2278	then
2279	spalte1="memory demand / PE":; spalte2="$memory MB"
2280	printf "\| $spalte1$spalte2 \| \n"
2281	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2282	printf "\| $spalte1$spalte2 \| \n"
2283	fi
2284
2285	if [[ $do_compile = true ]]
2286	then
2287	printf "\| \| \n"
2288	printf "\| Files to be compiled: \| \n"
2289	zeile=$source_list
2290	while [[ "$zeile" != "" ]]
2291	do
2292	spalte3=$zeile
2293	printf "\| $spalte3 \| \n"
2294	zeile=$(echo "$zeile" \| cut -c61-)
2295	done
2296	fi
2297	printf "#--------------------------------------------------------------#"
2298
2299
2300
2301	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2302	if [[ $do_trace = true ]]
2303	then
2304	(( i = 0 ))
2305	while (( i < iin ))
2306	do
2307	(( i = i + 1 ))
2308	if (( i == 1 ))
2309	then
2310	printf "\n\n >>> INPUT-file assignments:\n"
2311	fi
2312	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2313	done
2314	(( i = 0 ))
2315	while (( i < iout ))
2316	do
2317	(( i = i + 1 ))
2318	if (( i == 1 ))
2319	then
2320	printf "\n\n >>> OUTPUT-file assignments:\n"
2321	fi
2322	printf "\n ${localout[$i]} : ${pathout[$i]}"
2323	done
2324	(( i = 0 ))
2325	while (( i < iic ))
2326	do
2327	(( i = i + 1 ))
2328	if (( i == 1 ))
2329	then
2330	printf "\n\n >>> INPUT-commands:\n"
2331	fi
2332	printf "\n ${in_command[$i]}"
2333	done
2334	(( i = 0 ))
2335	while (( i < ioc ))
2336	do
2337	(( i = i + 1 ))
2338	if (( i == 1 ))
2339	then
2340	printf "\n\n >>> OUTPUT-commands:\n"
2341	fi
2342	printf "\n ${out_command[$i]}"
2343	done
2344	fi
2345
2346
2347	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2348	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2349	then
2350	antwort=dummy
2351	printf "\n\n"
2352	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2353	do
2354	printf " >>> everything o.k. (y/n) ? "
2355	read antwort
2356	done
2357	if [[ $antwort = n \|\| $antwort = N ]]
2358	then
2359	locat=user_abort; (( iec = 0 )); exit
2360	fi
2361	if [[ $do_batch = true ]]
2362	then
2363	printf " >>> batch-job will be created and submitted"
2364	else
2365	if [[ $local_compile = false ]]
2366	then
2367	printf " >>> MRUN will now continue to execute on this machine"
2368	else
2369	printf " >>> a test compilation will now be carried out on this machine"
2370	fi
2371	fi
2372	fi
2373
2374
2375
2376
2377	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2378	# CHENDE AKTIONEN DURCHGEFUEHRT
2379	if [[ $do_batch = false ]]
2380	then
2381
2382
2383	# TEMPORAEREN KATALOG ERZEUGEN
2384	mkdir -p $TEMPDIR
2385	chmod go+rx $TEMPDIR
2386	tmpcreate=true
2387
2388	# set striping on lustre file system
2389	# if [[ $localhost = lcsgih ]]
2390	# then
2391	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2392	# lfs getstripe $TEMPDIR
2393	# fi
2394
2395
2396	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2397	# TEMPORAERES VERZEICHNIS KOPIEREN
2398	if [[ $do_compile = true ]]
2399	then
2400
2401	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2402	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2403	if [[ $localhost = nech ]]
2404	then
2405	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2406	if mkdir -p $TEMPDIR_COMPILE
2407	then
2408	printf "\n *** \"$TEMPDIR_COMPILE\" "
2409	printf "\n is generated as temporary directory for cross compiling\n"
2410	else
2411	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2412	printf "\n needed for cross compilation failed"
2413	locat=compile
2414	exit
2415	fi
2416	else
2417	TEMPDIR_COMPILE=$TEMPDIR
2418	fi
2419
2420
2421	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2422	line=""
2423	grep "%depository_path" $config_file > tmp_mrun
2424	while read line
2425	do
2426	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2427	then
2428	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2429	then
2430	global_depository_path=`echo $line \| cut -d" " -s -f2`
2431	fi
2432	fi
2433	done < tmp_mrun
2434
2435	line=""
2436	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2437	while read line
2438	do
2439	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2440	then
2441	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2442	then
2443	local_depository_path=`echo $line \| cut -d" " -s -f2`
2444	fi
2445	fi
2446	done < tmp_mrun
2447
2448	if [[ "$local_depository_path" = "" ]]
2449	then
2450	if [[ "$global_depository_path" != "" ]]
2451	then
2452	local_depository_path=$global_depository_path
2453	else
2454	printf "\n\n +++ no depository path found in configuration file"
2455	printf "\n for local host \"$localhost\" "
2456	printf "\n please set \"\%depository_path\" in configuration file\n"
2457	locat=config_file; exit
2458	fi
2459	fi
2460	eval local_depository_path=$local_depository_path
2461	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2462	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2463
2464
2465	basename=`print $mainprog \| cut -f1 -d"."`
2466	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2467	if [[ ! -f $make_depository ]]
2468	then
2469	printf "\n"
2470	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2471	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2472	else
2473	cp $make_depository $TEMPDIR_COMPILE
2474	cd $TEMPDIR_COMPILE
2475	tar -xf $make_depository > /dev/null 2>&1
2476	cd - > /dev/null
2477	fi
2478
2479	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2480
2481	else
2482
2483	cp $executable ${TEMPDIR}/a.out
2484
2485	fi
2486
2487
2488	# WECHSEL IN TEMPORAEREN KATALOG
2489	cd $TEMPDIR
2490	printf "\n *** changed to temporary directory: $TEMPDIR"
2491
2492
2493	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2494	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2495	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2496	# ERMITTELN
2497	(( i = 0 ))
2498	while (( i < iout ))
2499	do
2500	(( i = i + 1 ))
2501	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2502	then
2503	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2504	else
2505	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2506	fi
2507	done
2508
2509
2510	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2511	if [[ $do_compile = true ]]
2512	then
2513
2514
2515	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2516	printf "\n\n\n *** compilation starts \n$striche\n"
2517	printf " *** compilation with make using following options:\n"
2518	printf " make depository: $make_depository"
2519	if [[ "$mopts" != "" ]]
2520	then
2521	printf " make options: $mopts\n"
2522	fi
2523	printf " compilername: $compiler_name\n"
2524	printf " compiler options: $fopts\n"
2525	printf " preprocessor directives: $cpp_options \n"
2526	printf " linker options: $lopts \n"
2527	if [[ "$modules" != "" ]]
2528	then
2529	printf " modules to be load: $modules \n"
2530	fi
2531	printf " source code files: $source_list \n"
2532
2533	if [[ $localhost = nech ]]
2534	then
2535	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2536	cp $TEMPDIR_COMPILE/a.out .
2537	[[ $? != 0 ]] && compile_error=true
2538	rm -rf $TEMPDIR_COMPILE
2539	elif [[ $localhost = ibmh ]]
2540	then
2541	printf " compiler is called via ssh on \"plogin1\" \n"
2542	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2543	[[ ! -f a.out ]] && compile_error=true
2544	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2545	elif [[ $localhost = lcsgib ]]
2546	then
2547	printf " compiler is called via ssh on \"bicegate0\" \n"
2548	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2549	[[ ! -f a.out ]] && compile_error=true
2550	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2551	elif [[ $localhost = lcsgih ]]
2552	then
2553	printf " compiler is called via ssh on \"hicegate0\" \n"
2554	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2555	[[ ! -f a.out ]] && compile_error=true
2556	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2557	else
2558	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2559	[[ "$module_calls" != "" ]] && eval $module_calls
2560	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2561	fi
2562
2563	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2564	then
2565	printf "\n +++ error occured while compiling or linking"
2566	locat=compile
2567
2568	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2569	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2570	# then
2571	exit
2572	# else
2573	# locat=normal
2574	# fi
2575	else
2576	printf "$striche\n *** compilation finished \n"
2577	fi
2578	fi
2579
2580
2581	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2582	if [[ $local_compile = true ]]
2583	then
2584	cd $HOME
2585	rm -rf $TEMPDIR
2586	locat=local_compile; exit
2587	fi
2588
2589
2590	# BEREITSTELLEN DER INPUT-DATEIEN
2591	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2592	(( i = 0 ))
2593	while (( i < iin ))
2594	do
2595	(( i = i + 1 ))
2596	if (( i == 1 ))
2597	then
2598	printf "\n\n *** providing INPUT-files:\n$striche"
2599	fi
2600
2601
2602	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2603	if [[ "${transin[$i]}" = unavailable ]]
2604	then
2605	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2606	then
2607	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2608	printf "\n is not available!"
2609	else
2610	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2611	printf "\n is not available!"
2612	fi
2613	continue
2614	fi
2615
2616	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2617	files_for_pes=false; datentyp=file
2618	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2619	then
2620	files_for_pes=true; datentyp=directory
2621	actionin[$i]=""
2622	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2623	then
2624	actionin[$i]=""
2625	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2626	then
2627	files_for_pes=true; datentyp=directory
2628	actionin[$i]="ar"
2629	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2630	then
2631	actionin[$i]="ar"
2632	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2633	then
2634	files_for_pes=true; datentyp=directory
2635	actionin[$i]="fl"
2636	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2637	then
2638	actionin[$i]="fl"
2639	fi
2640
2641	if [[ $files_for_pes = true ]]
2642	then
2643	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2644	else
2645	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2646	fi
2647
2648	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2649	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2650	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2651	# SERVER ZU HOLEN
2652	if [[ "${actionin[$i]}" = fl ]]
2653	then
2654	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2655	if [[ $files_for_pes = false ]]
2656	then
2657	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2658	then
2659	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2660	got_tmp[$i]=true
2661	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2662	then
2663	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2664	printf "\n *** trying to use backup copy in \"$WORK\" "
2665	cp $WORK/${frelin[$i]} ${localin[$i]}
2666	else
2667	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2668	printf "\n or \"$tmp_data_catalog\" does not exist!"
2669	printf "\n *** trying to get copy from archive"
2670	actionin[$i]=ar
2671	fi
2672	else
2673	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2674	then
2675	mkdir ${localin[$i]}
2676	cd $tmp_data_catalog/${frelin[$i]}
2677	for file in $(ls *)
2678	do
2679	ln $file $TEMPDIR/${localin[$i]}
2680	done
2681	cd $TEMPDIR
2682	got_tmp[$i]=true
2683	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2684	then
2685	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2686	printf "\n *** trying to use backup copy in \"$WORK\" "
2687	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2688	else
2689	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2690	printf "\n or \"$tmp_data_catalog\" does not exist!"
2691	printf "\n *** trying to get copy from archive"
2692	actionin[$i]=ar
2693	fi
2694	fi
2695	fi
2696
2697
2698	# DATEI LIEGT AUF ARCHIV-SERVER
2699	if [[ "${actionin[$i]}" = ar ]]
2700	then
2701
2702	if [[ $files_for_pes = false ]]
2703	then
2704	printf "\n file will be restored from archive-system ($archive_system)!"
2705	else
2706	printf "\n directory will be restored from archive-system ($archive_system)!"
2707	fi
2708
2709	file_restored=false
2710
2711	if [[ $archive_system = asterix ]]
2712	then
2713	do_stagein=true
2714	(( stagein_anz = 0 ))
2715	while [[ $do_stagein = true ]]
2716	do
2717	if [[ $files_for_pes = false ]]
2718	then
2719	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2720	else
2721	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2722	fi
2723	cat STAGEIN_OUTPUT
2724	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2725	then
2726	file_restored=true
2727	do_stagein=false
2728	else
2729	(( stagein_anz = stagein_anz + 1 ))
2730	if (( stagein_anz == 10 ))
2731	then
2732	printf "\n +++ stagein stoped after 10 tries"
2733	locat=stage
2734	exit
2735	fi
2736	printf "\n +++ restoring from archive failed, trying again:"
2737	sleep 900
2738	fi
2739	done
2740	elif [[ $archive_system = DMF ]]
2741	then
2742	if [[ $files_for_pes = false ]]
2743	then
2744	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2745	locat=DMF
2746	exit
2747	else
2748	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2749	cp -r $ARCHIVE/${frelin[$i]} $PWD
2750	file_restored=true
2751	fi
2752	elif [[ $archive_system = tivoli ]]
2753	then
2754	if [[ $files_for_pes = false ]]
2755	then
2756	if [[ $localhost = lcsgih ]]
2757	then
2758	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2759	else
2760	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2761	fi
2762	else
2763	(( inode = 0 ))
2764	while (( inode < nodes ))
2765	do
2766	if [[ $localhost = lcsgih ]]
2767	then
2768	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2769	else
2770	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2771	fi
2772	(( inode = inode + 1 ))
2773	done
2774	fi
2775	file_restored=true
2776	elif [[ $archive_system = ut ]]
2777	then
2778	if [[ $files_for_pes = false ]]
2779	then
2780	cp $UT/${frelin[$i]} .
2781	else
2782	(( inode = 0 ))
2783	while (( inode < nodes ))
2784	do
2785	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2786	(( inode = inode + 1 ))
2787	done
2788	fi
2789	file_restored=true
2790	else
2791	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2792	locat=rearchive
2793	exit
2794	fi
2795
2796	if [[ $file_restored = true ]]
2797	then
2798
2799	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2800	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2801	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2802	if [[ $files_for_pes = false ]]
2803	then
2804	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2805	else
2806	mkdir $tmp_data_catalog/${frelin[$i]}
2807	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2808	fi
2809	got_tmp[$i]=true
2810
2811	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2812	mv ${frelin[$i]} ${localin[$i]}
2813
2814	fi
2815	fi
2816
2817
2818	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2819	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2820	then
2821
2822	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2823	then
2824
2825	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2826	printf "\n file will be provided for $numprocs processors"
2827	mkdir ${localin[$i]}
2828	ival=$numprocs
2829	(( ii = 0 ))
2830	while (( ii <= ival-1 ))
2831	do
2832	if (( ii < 10 ))
2833	then
2834	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2835	elif (( ii < 100 ))
2836	then
2837	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2838	elif (( ii < 1000 ))
2839	then
2840	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2841	else
2842	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2843	fi
2844	(( ii = ii + 1 ))
2845	done
2846
2847	else
2848
2849	if [[ $files_for_pes = true ]]
2850	then
2851
2852	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2853	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2854	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2855	# PER MOVE UMBENANNT WERDEN
2856	printf "\n providing $numprocs files for the respective processors"
2857	mkdir ${localin[$i]}
2858	if [[ $link_local_input = true ]]
2859	then
2860	printf " using ln -f\n"
2861	cd ${absnamein[$i]}
2862	for file in $(ls *)
2863	do
2864	ln -f $file ${localin[$i]}
2865	done
2866	cd $TEMPDIR
2867	fi
2868	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2869	if [[ ! -f "${localin[$i]}/_0000" ]]
2870	then
2871	if [[ $link_local_input = true ]]
2872	then
2873	printf " ln failed for .../_0000, using cp...\n"
2874	fi
2875	cp -r ${absnamein[$i]}/* ${localin[$i]}
2876	fi
2877
2878	else
2879	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2880	if [[ $link_local_input = true ]]
2881	then
2882	printf " using ln -f\n"
2883	ln -f ${absnamein[$i]} ${localin[$i]}
2884	fi
2885	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2886	if [[ ! -f "${localin[$i]}" ]]
2887	then
2888	if [[ $link_local_input = true ]]
2889	then
2890	printf " ln failed, using cp...\n"
2891	fi
2892	cp ${absnamein[$i]} ${localin[$i]}
2893	fi
2894	fi
2895	fi
2896	fi
2897
2898	done
2899	if (( i != 0 ))
2900	then
2901	printf "\n$striche\n *** all INPUT-files provided \n"
2902	fi
2903
2904
2905	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2906	(( i = 0 ))
2907	while (( i < iic ))
2908	do
2909	(( i = i + 1 ))
2910	if (( i == 1 ))
2911	then
2912	printf "\n\n *** execution of INPUT-commands:\n$striche"
2913	fi
2914	printf "\n >>> ${in_command[$i]}"
2915	eval ${in_command[$i]}
2916	if (( i == iic ))
2917	then
2918	printf "\n$striche\n"
2919	fi
2920	done
2921
2922
2923	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2924	cpurest=${cpumax}.
2925
2926
2927	# START DVR STREAMING SERVER
2928	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2929	then
2930	if [[ "$dvr_server" != "" ]]
2931	then
2932
2933	printf "\n\n *** preparing the dvr streaming server configuration file"
2934
2935	# Check, if a dvr server is already running
2936	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2937	if [[ "$running_dvrserver_id" != "" ]]
2938	then
2939
2940	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2941	printf "\n This server is used instead starting a new one!"
2942	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2943
2944	else
2945
2946	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2947	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2948	then
2949	cp ${PALM_BIN}/.dvrserver.config .
2950
2951	# Entering the BASEDIR, UID and GID into this file
2952	user_id=`id -u`
2953	group_id=`id -g`
2954	# & is needed as seperator, because TEMPDIR contains /
2955	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2956	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2957	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2958	mv .dvrserver.3 .dvrserver.config
2959	rm .dvrserver.1 .dvrserver.2
2960
2961	# Start dvr server in background, get his id and print on terminal
2962	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2963	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2964	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2965	local_dvrserver_running=.TRUE.
2966	else
2967	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2968	printf "\n \"$PALM_BIN\" "
2969	locat=dvr
2970	exit
2971	fi
2972
2973	fi
2974
2975	else
2976	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2977	fi
2978	fi
2979
2980
2981	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2982	# LESEN VON PALM)
2983	cat > ENVPAR << %%END%%
2984	&envpar run_identifier = '$fname', host = '$localhost',
2985	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2986	maximum_cpu_time_allowed = ${cpumax}.,
2987	revision = '$global_revision',
2988	local_dvrserver_running = $local_dvrserver_running /
2989
2990	%%END%%
2991
2992
2993	# PROGRAMMSTART
2994	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2995	PATH=$PATH:$TEMPDIR
2996
2997	# MPI debug option (argument checking, slows down execution due to increased latency)
2998	if [[ "$mpi_debug" = true ]]
2999	then
3000	export MPI_CHECK_ARGS=1
3001	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3002	fi
3003
3004	if [[ "$totalview" = true ]]
3005	then
3006	printf "\n *** totalview debugger will be used"
3007	tv_opt="-tv"
3008	else
3009	tv_opt=""
3010	fi
3011
3012	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3013	then
3014	if [[ "$ENVIRONMENT" = BATCH ]]
3015	then
3016	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3017	then
3018	printf "\n +++ debug is allowed in interactive mode only"
3019	locat=debug
3020	exit
3021	fi
3022	fi
3023	if [[ $localhost = decalpha ]]
3024	then
3025	dxladebug a.out
3026	elif [[ $localhost = ibmh ]]
3027	then
3028
3029	# SETUP THE IBM MPI ENVIRONMENT
3030	export MP_SHARED_MEMORY=yes
3031	export AIXTHREADS_SCOPE=S
3032	export OMP_NUM_THREADS=$threads_per_task
3033	export AUTHSTATE=files
3034	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3035
3036	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3037	export MP_ADAPTER_USE=shared
3038	export MP_CPU_USE=multiple
3039	export MP_TIMEOUT=1200
3040
3041	unset MP_TASK_AFFINITY
3042
3043	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3044	#(( ii = 1 ))
3045	#while (( ii <= $numprocs ))
3046	#do
3047	# echo $localhost_realname >> hostfile
3048	# (( ii = ii + 1 ))
3049	#done
3050	#export MP_HOSTFILE=hostfile
3051
3052	if [[ "$LOADLBATCH" = yes ]]
3053	then
3054	totalview poe a.out $ROPTS
3055	else
3056	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3057	export TVDSVRLAUNCHCMD=ssh
3058	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3059	fi
3060	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3061	then
3062	# CURRENTLY NO DEBUGGER ON LCSGI
3063	if [[ $run_coupled_model = true ]]
3064	then
3065	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3066	locat=debug
3067	exit
3068	else
3069	echo "no_coupling" > runfile_atmos
3070	fi
3071	(( ii = $numprocs / $threads_per_task ))
3072	export OMP_NUM_THREADS=$threads_per_task
3073	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3074	if [[ $threads_per_task != 1 ]]
3075	then
3076	printf "\n threads per task: $threads_per_task"
3077	fi
3078	printf "\n\n"
3079	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3080	then
3081	# export MPI_LAUNCH_TIMEOUT=360
3082	if [[ "$totalview" = true ]]
3083	then
3084	printf "\n running totalview debugger"
3085	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3086	else
3087	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3088	fi
3089	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3090	then
3091	# ulimit -s 300000 # A too large stack size causes problems
3092	# export MV2_NUM_PORTS=2
3093	# export MV2_CPU_MAPPING=0:1:2:3
3094	if [[ "$totalview" = true ]]
3095	then
3096	printf "\n running totalview debugger"
3097	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3098	else
3099	mpiexec ./a.out $ROPTS < runfile_atmos
3100	fi
3101	fi
3102	else
3103	printf "\n +++ no debug available on \"$localhost\" "
3104	printf "\n or not implemented in mrun so far"
3105	locat=debug
3106	exit
3107	fi
3108
3109	# end debug mode
3110	else
3111
3112	# normal execution
3113	if [[ -n $numprocs ]]
3114	then
3115	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3116	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3117	then
3118	# SETUP THE IBM MPI ENVIRONMENT
3119	if [[ $host != ibmh && $host != ibmkisti ]]
3120	then
3121	export MP_SHARED_MEMORY=yes
3122	export AIXTHREAD_SCOPE=S
3123	export OMP_NUM_THREADS=$threads_per_task
3124	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3125	export AUTHSTATE=files
3126	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3127	# export MP_PRINTENV=yes
3128
3129	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3130	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3131	export MP_WAIT_MODE=poll
3132	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3133	fi
3134
3135	if [[ $host = ibmkisti ]]
3136	then
3137	export LANG=en_US
3138	export MP_SHARED_MEMORY=yes
3139	if [[ $threads_per_task = 1 ]]
3140	then
3141	export MP_SINGLE_THREAD=yes
3142	export MEMORY_AFFINITY=MCM
3143	else
3144	export OMP_NUM_THREADS=$threads_per_task
3145	fi
3146	fi
3147
3148	if [[ "$LOADLBATCH" = yes ]]
3149	then
3150	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3151	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3152	then
3153	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3154	else
3155	if [[ $run_coupled_model = false ]]
3156	then
3157	if [[ "$ocean_file_appendix" = true ]]
3158	then
3159	echo "precursor_ocean" > runfile_atmos
3160	else
3161	echo "precursor_atmos" > runfile_atmos
3162	fi
3163	else
3164	(( iia = $numprocs_atmos / $threads_per_task ))
3165	(( iio = $numprocs_ocean / $threads_per_task ))
3166	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3167	printf "\n using $coupled_mode coupling"
3168	printf "\n\n"
3169	echo "coupled_run $iia $iio" > runfile_atmos
3170	fi
3171	poe ./a.out $ROPTS < runfile_atmos
3172	fi
3173	else
3174	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3175	then
3176	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3177	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3178	then
3179	if [[ -f $hostfile ]]
3180	then
3181	cp $hostfile hostfile
3182	else
3183	(( ii = 1 ))
3184	while (( ii <= $numprocs ))
3185	do
3186	echo $localhost_realname >> hostfile
3187	(( ii = ii + 1 ))
3188	done
3189	fi
3190	export MP_HOSTFILE=hostfile
3191	if [[ $run_coupled_model = false ]]
3192	then
3193	if [[ "$ocean_file_appendix" = true ]]
3194	then
3195	echo "precursor_ocean" > runfile_atmos
3196	else
3197	echo "precursor_atmos" > runfile_atmos
3198	fi
3199	else
3200	(( iia = $numprocs_atmos / $threads_per_task ))
3201	(( iio = $numprocs_ocean / $threads_per_task ))
3202	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3203	printf "\n using $coupled_mode coupling"
3204	printf "\n\n"
3205	echo "coupled_run $iia $iio" > runfile_atmos
3206	fi
3207	if [[ $localhost = ibmy ]]
3208	then
3209	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3210	else
3211	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3212	fi
3213
3214	else
3215	if [[ "$host_file" = "" ]]
3216	then
3217	printf "\n +++ no hostfile given in configuration file"
3218	locat=config_file
3219	exit
3220	else
3221	eval host_file=$host_file
3222	fi
3223	export MP_HOSTFILE=$host_file
3224	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3225	fi
3226	fi
3227	elif [[ $host = nech \|\| $host = necriam ]]
3228	then
3229	(( ii = nodes ))
3230	if [[ $ii = 1 ]]
3231	then
3232	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3233	export MPIPROGINF=YES
3234	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3235	echo "*** execution on single node with mpirun"
3236	mpirun -np $numprocs ./a.out $ROPTS
3237	else
3238	(( i = 0 ))
3239	while (( i < ii ))
3240	do
3241	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3242	(( i = i + 1 ))
3243	done
3244
3245	echo "#!/bin/sh" > mpi_exec_shell
3246	echo " " >> mpi_exec_shell
3247	echo "set -u" >> mpi_exec_shell
3248	echo "F_ERRCNT=0" >> mpi_exec_shell
3249	echo "MPIPROGINV=YES" >> mpi_exec_shell
3250	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3251	echo "cpurest=$cpurest" >> mpi_exec_shell
3252	echo "fname=$fname" >> mpi_exec_shell
3253	echo "localhost=$localhost" >> mpi_exec_shell
3254	echo "return_addres=$return_addres" >> mpi_exec_shell
3255	echo "return_username=$return_username" >> mpi_exec_shell
3256	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3257	echo "write_binary=$write_binary" >> mpi_exec_shell
3258	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3259	echo " " >> mpi_exec_shell
3260	echo "export F_ERRCNT" >> mpi_exec_shell
3261	echo "export MPIPROGINV" >> mpi_exec_shell
3262	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3263	echo "export cpurest" >> mpi_exec_shell
3264	echo "export fname" >> mpi_exec_shell
3265	echo "export localhost" >> mpi_exec_shell
3266	echo "export return_addres" >> mpi_exec_shell
3267	echo "export return_username" >> mpi_exec_shell
3268	echo "export tasks_per_node" >> mpi_exec_shell
3269	echo "export write_binary" >> mpi_exec_shell
3270	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3271	echo " " >> mpi_exec_shell
3272	echo "exec ./a.out" >> mpi_exec_shell
3273
3274	chmod u+x mpi_exec_shell
3275	export MPIPROGINF=YES
3276	mpirun -f multinode_config &
3277	wait
3278
3279	fi
3280	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3281	then
3282
3283	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3284	# DOES NOT EXIST
3285	if [[ $host != lcsgih && $host != lcsgib ]]
3286	then
3287	if [[ -f $hostfile ]]
3288	then
3289	cp $hostfile hostfile
3290	else
3291	(( ii = 1 ))
3292	while (( ii <= $numprocs / $threads_per_task ))
3293	do
3294	echo $localhost_realname >> hostfile
3295	(( ii = ii + 1 ))
3296	done
3297	fi
3298	eval zeile=\"`head -n $ii hostfile`\"
3299	printf "\n *** running on: $zeile"
3300	fi
3301
3302	(( ii = $numprocs / $threads_per_task ))
3303	export OMP_NUM_THREADS=$threads_per_task
3304	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3305	if [[ $threads_per_task != 1 ]]
3306	then
3307	# increase stack size to unlimited, because large runs
3308	# may abort otherwise
3309	ulimit -Ss unlimited
3310	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3311	fi
3312	if [[ $run_coupled_model = false ]]
3313	then
3314	if [[ "$ocean_file_appendix" = true ]]
3315	then
3316	echo "precursor_ocean" > runfile_atmos
3317	else
3318	echo "precursor_atmos" > runfile_atmos
3319	fi
3320	printf "\n\n"
3321	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3322	then
3323	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3324	then
3325	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3326	# export MPI_DSM_DISTRIBUTE=1
3327	# MPI_DSM_CPULIST: pin MPI processes to cores
3328	if [[ $use_openmp = false ]]
3329	then
3330	if [[ "$sgi_feature" = ice2 ]]
3331	then
3332	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3333	else
3334	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3335	fi
3336	else
3337	unset MPI_DSM_CPULIST
3338	fi
3339	# MPI_IB_RAILS: use both IB rails on ICE2
3340	export MPI_BUFS_PER_HOST=512
3341	export MPI_IB_RAILS=2
3342	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3343	export MPI_CONNECTIONS_THRESHOLD=8192
3344	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3345	export MPI_TYPE_DEPTH=20
3346	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3347	export MPI_GROUP_MAX=64
3348	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3349	if [[ $use_openmp = true ]]
3350	then
3351	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3352	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3353	else
3354	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3355	fi
3356
3357	# next is test for openmp usage
3358	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3359	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3360	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3361	then
3362	export MV2_NUM_PORTS=2
3363	# The default setting of MV2_CPU_MAPPING gives best results
3364	# export MV2_ENABLE_AFFINITY=1
3365	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3366	# if [[ "$sgi_feature" = ice2 ]]
3367	# then
3368	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3369	# else
3370	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3371	# fi
3372	if [[ $use_openmp = true ]]
3373	then
3374	unset MV2_CPU_MAPPING
3375	export MV2_ENABLE_AFFINITY=0
3376	fi
3377	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3378	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3379	if [[ $use_openmp = true ]]
3380	then
3381	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3382	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3383	else
3384	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3385	fi
3386	elif [[ "$mpilib" = impi ]]
3387	then
3388	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3389	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3390	fi
3391	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3392	then
3393	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3394	else
3395	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3396	fi
3397	else
3398
3399	# currently there is no full MPI-2 support on ICE and XT4
3400	(( iia = $numprocs_atmos / $threads_per_task ))
3401	(( iio = $numprocs_ocean / $threads_per_task ))
3402	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3403	printf "\n using $coupled_mode coupling"
3404	printf "\n\n"
3405
3406	if [[ $coupled_mode = "mpi2" ]]
3407	then
3408	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3409	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3410	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3411	then
3412
3413	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3414	then
3415	# export MPI_LAUNCH_TIMEOUT=360
3416	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3417	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3418	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3419	then
3420	# ulimit -s 300000 # A too large stack size causes problems
3421	# export MV2_NUM_PORTS=2
3422	# export MV2_CPU_MAPPING=0:1:2:3
3423	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3424	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3425	fi
3426
3427	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3428	then
3429
3430	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3431	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3432
3433	else
3434	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3435	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3436	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3437	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3438	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3439	fi
3440	wait
3441
3442	else
3443
3444	echo "coupled_run $iia $iio" > runfile_atmos
3445	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3446	then
3447
3448	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3449	then
3450	# export MPI_LAUNCH_TIMEOUT=360
3451	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3452	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3453	then
3454	# ulimit -s 300000 # A too large stack size causes problems
3455	# export MV2_NUM_PORTS=2
3456	# export MV2_CPU_MAPPING=0:1:2:3
3457	mpiexec ./a.out $ROPTS < runfile_atmos
3458	fi
3459
3460	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3461	then
3462
3463	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3464
3465	elif [[ $host = lck \|\| $host = lckordi ]]
3466	then
3467	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3468	fi
3469	wait
3470	fi
3471
3472	fi
3473	elif [[ $host = decalpha ]]
3474	then
3475	dmpirun -np $numprocs a.out $ROPTS
3476	elif [[ $host = lckyoto ]]
3477	then
3478	set -xv
3479	export P4_RSHCOMMAND=plesh
3480	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3481	if [[ "$ENVIRONMENT" = BATCH ]]
3482	then
3483	if [[ "$cond2" = fujitsu ]]
3484	then
3485	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3486	elif [[ "cond2" = pgi ]]
3487	then
3488	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3489	else
3490	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3491	fi
3492	else
3493	if [[ "$cond2" = "" ]]
3494	then
3495	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3496	else
3497	mpirun -np $numprocs ./a.out $ROPTS
3498	fi
3499	fi
3500	set +xv
3501	elif [[ $host = lctit ]]
3502	then
3503	export OMP_NUM_THREADS=$threads_per_task
3504	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3505	if [[ "$threads_per_task" != 1 ]]
3506	then
3507	export MV2_ENABLE_AFFINITY=0
3508	fi
3509	echo "----- PBS_NODEFILE content:"
3510	cat $PBS_NODEFILE
3511	echo "-----"
3512	(( ii = $numprocs / $threads_per_task ))
3513	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3514	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3515	else
3516	mpprun -n $numprocs a.out $ROPTS
3517	fi
3518	[[ $? != 0 ]] && execution_error=true
3519
3520
3521	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3522	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3523	then
3524	apprentice
3525	fi
3526	else
3527	a.out $ROPTS
3528	fi
3529	fi
3530	if [[ $? != 0 \|\| $execution_error = true ]]
3531	then
3532
3533	# ABBRUCH BEI LAUFZEITFEHLER
3534	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3535	printf "\n +++ runtime error occured"
3536	locat=execution
3537	exit
3538	else
3539	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3540	printf "\n$striche\n *** execution finished \n"
3541
3542	# Stop the dvr streaming server and process the dvr output in order
3543	# to create dvrs- and html-files containing all streams
3544	if [[ "$dvrserver_id" != "" ]]
3545	then
3546	kill $dvrserver_id
3547	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3548
3549	# If there is a directory, data have been output by the
3550	# streaming server. Otherwise, user has chosen dvrp_output=local
3551	if [[ -d DATA_DVR ]]
3552	then
3553
3554	# Add the current dvr configuration file to the dvr output
3555	# directory
3556	cp .dvrserver.config DATA_DVR
3557
3558	# Process the dvr output (option -s for also generating
3559	# sequence mode data)
3560	process_dvr_output -d DATA_DVR -f $fname -s
3561
3562	else
3563
3564	# Process the local output
3565	process_dvr_output -l -d DATA_DVR -f $fname
3566
3567	fi
3568
3569	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3570	then
3571
3572	# Process dvr output generated in local mode (dvrp_output=local)
3573	process_dvr_output -l -d DATA_DVR -f $fname
3574
3575	fi
3576	fi
3577
3578
3579
3580	# Call of combine_plot_fields in order to merge single files written
3581	# by each PE into one file.
3582	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3583	then
3584	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3585	printf "\n 2d- and/or 3d-data may be incomplete!"
3586	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3587	else
3588	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3589	combine_plot_fields${block}.x
3590	fi
3591
3592
3593
3594	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3595	(( i = 0 ))
3596	while (( i < ioc ))
3597	do
3598	(( i = i + 1 ))
3599	if (( i == 1 ))
3600	then
3601	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3602	fi
3603	printf "\n >>> ${out_command[$i]}"
3604	eval ${out_command[$i]}
3605	if (( i == ioc ))
3606	then
3607	printf "\n$striche\n"
3608	fi
3609	done
3610
3611
3612	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3613	if [[ $do_trace = true ]]
3614	then
3615	printf "\n\n"
3616	ls -al
3617	fi
3618
3619
3620
3621	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3622	(( i = 0 ))
3623	while (( i < iout ))
3624	do
3625	(( i = i + 1 ))
3626	if (( i == 1 ))
3627	then
3628	printf "\n\n *** saving OUTPUT-files:\n$striche"
3629	fi
3630
3631	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3632	files_for_pes=false; filetyp=file
3633	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3634	then
3635	files_for_pes=true; filetyp=directory
3636	actionout[$i]=""
3637	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3638	then
3639	actionout[$i]=""
3640	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3641	then
3642	files_for_pes=true; filetyp=directory
3643	actionout[$i]="ar"
3644	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3645	then
3646	actionout[$i]="ar"
3647	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3648	then
3649	files_for_pes=true; filetyp=directory
3650	actionout[$i]="fl"
3651	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3652	then
3653	actionout[$i]="fl"
3654	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3655	then
3656	files_for_pes=true; filetyp=directory
3657	actionout[$i]="tr"
3658	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3659	then
3660	actionout[$i]="tr"
3661	fi
3662
3663	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3664	then
3665	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3666	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3667	then
3668	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3669	else
3670
3671
3672	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3673	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3674	# REMOTE-RECHNUNGEN
3675	if [[ "${actionout[$i]}" = tr ]]
3676	then
3677	if [[ $localhost != $fromhost ]]
3678	then
3679	if [[ $files_for_pes = false ]]
3680	then
3681	cps=""
3682	cst=""
3683	else
3684	cps=-c
3685	cst="/"
3686	fi
3687	if [[ $localhost = nech ]]
3688	then
3689
3690	# TRANSFER IN EIGENSTAENDIGEM JOB
3691	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3692	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3693	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3694	if [[ $files_for_pes = false ]]
3695	then
3696	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3697	else
3698	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3699	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3700	fi
3701
3702	echo "set -x" > transfer_${localout[$i]}
3703	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3704
3705	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3706	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3707	printf "\n or higher cycle\n"
3708	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3709
3710	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3711
3712	if [[ $localhost = nech ]]
3713	then
3714	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3715	else
3716	if [[ "$LOGNAME" = b323013 ]]
3717	then
3718	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3719	else
3720	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3721	fi
3722	fi
3723
3724	else
3725
3726	# TRANSFER INNERHALB DIESES JOBS
3727	transfer_failed=false
3728	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3729	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3730	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3731	[[ $? != 0 ]] && transfer_failed=true
3732
3733	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3734	# LOKALER MASCHINE ANLEGEN
3735	if [[ $transfer_failed = true ]]
3736	then
3737	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3738	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3739
3740	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3741	# ANLEGEN.
3742	eval local_catalog=${pathout[$i]}
3743	if [[ ! -d $local_catalog ]]
3744	then
3745	printf " *** local directory does not exist. Trying to create:\n"
3746	printf " $local_catalog \n"
3747	mkdir -p $local_catalog
3748	fi
3749	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3750	transfer_problems=true
3751	fi
3752	fi
3753	else
3754
3755	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3756	actionout[$i]=""
3757	fi
3758	fi
3759
3760
3761	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3762	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3763	# REMOTE-RECHNUNGEN
3764	if [[ "${actionout[$i]}" = tra ]]
3765	then
3766	if [[ $localhost != $fromhost ]]
3767	then
3768	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3769	then
3770
3771	# TRANSFER IN EIGENSTAENDIGEM JOB
3772	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3773	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3774	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3775	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3776
3777	echo "set -x" > transfer_${localout[$i]}
3778	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3779
3780	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3781	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3782	printf "\n or higher cycle\n"
3783	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3784
3785	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3786
3787	if [[ $localhost = nech ]]
3788	then
3789	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3790	else
3791	if [[ $LOGNAME = b323013 ]]
3792	then
3793	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3794	else
3795	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3796	fi
3797	fi
3798
3799	else
3800
3801	# TRANSFER INNERHALB DIESES JOBS
3802	transfer_failed=false
3803	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3804	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3805	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3806	[[ $? != 0 ]] && transfer_failed=true
3807
3808	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3809	# LOKALER MASCHINE ANLEGEN
3810	if [[ $transfer_failed = true ]]
3811	then
3812	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3813	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3814
3815	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3816	# ANLEGEN
3817	eval local_catalog=${pathout[$i]}
3818	if [[ ! -d $local_catalog ]]
3819	then
3820	printf " *** local directory does not exist. Trying to create:\n"
3821	printf " $local_catalog \n"
3822	mkdir -p $local_catalog
3823	fi
3824
3825	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3826	transfer_problems=true
3827	fi
3828	fi
3829	else
3830
3831	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3832	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3833	actionout[$i]=a
3834	fi
3835	fi
3836
3837
3838	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3839	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3840	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3841	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3842	if [[ "${actionout[$i]}" = fl ]]
3843	then
3844	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3845	chmod g+rx $tmp_data_catalog
3846	if [[ $files_for_pes = false ]]
3847	then
3848	printf "\n >>> OUTPUT: ${localout[$i]} to"
3849	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3850	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3851	else
3852	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3853	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3854	mkdir $tmp_data_catalog/${frelout[$i]}
3855	cd ${localout[$i]}
3856	for file in $(ls *)
3857	do
3858	ln -f $file $tmp_data_catalog/${frelout[$i]}
3859	done
3860	cd $TEMPDIR
3861	fi
3862
3863
3864	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3865	if [[ $store_on_archive_system = true ]]
3866	then
3867
3868	if [[ $archive_system = asterix ]]
3869	then
3870	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3871	if [[ $files_for_pes = false ]]
3872	then
3873	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3874	else
3875	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3876	fi
3877	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3878	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3879	echo "then" >> archive_${frelout[$i]}
3880	echo " do_stageout=false" >> archive_${frelout[$i]}
3881	echo "else" >> archive_${frelout[$i]}
3882	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3883	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3884	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3885	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3886	if [[ $files_for_pes = false ]]
3887	then
3888	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3889	else
3890	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3891	fi
3892	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3893	echo "fi" >> archive_${frelout[$i]}
3894	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3895	elif [[ $archive_system = DMF ]]
3896	then
3897	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3898	if [[ $files_for_pes = false ]]
3899	then
3900	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3901	locat=DMF
3902	exit
3903	else
3904	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3905	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3906	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3907	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3908	fi
3909	elif [[ $archive_system = tivoli ]]
3910	then
3911	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3912	if [[ $files_for_pes = false ]]
3913	then
3914	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3915	echo "set -x" >> archive_${frelout[$i]}
3916	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3917	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3918	else
3919
3920	echo "set -x" >> archive_${frelout[$i]}
3921	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3922	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3923	cd $tmp_data_catalog
3924	all_files=`ls -1 ${frelout[$i]}/*`
3925	cd - > /dev/null
3926	(( inode = 0 ))
3927	(( tp1 = tasks_per_node + 1 ))
3928	while (( inode < nodes ))
3929	do
3930	# echo "*** all_files = \"$all_files\" "
3931	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3932	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3933	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3934	# echo "*** files = \"$files\" "
3935	# echo "*** all_files = \"$all_files\" "
3936	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3937	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3938	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3939	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3940	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3941	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3942	(( inode = inode + 1 ))
3943	done
3944	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3945	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3946	fi
3947	elif [[ $archive_system = ut ]]
3948	then
3949	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3950	if [[ $files_for_pes = false ]]
3951	then
3952	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3953	echo "set -x" >> archive_${frelout[$i]}
3954	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3955	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3956	else
3957
3958	echo "set -x" >> archive_${frelout[$i]}
3959	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3960	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3961	cd $tmp_data_catalog
3962	all_files=`ls -1 ${frelout[$i]}/*`
3963	cd - > /dev/null
3964	(( inode = 0 ))
3965	(( tp1 = tasks_per_node + 1 ))
3966	while (( inode < nodes ))
3967	do
3968	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3969	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3970	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3971	(( inode = inode + 1 ))
3972	done
3973	fi
3974	elif [[ $archive_system = none ]]
3975	then
3976	printf " +++ archiving on $localhost not available!\n"
3977	fi
3978
3979	if [[ $archive_system != none ]]
3980	then
3981	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3982	then
3983	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3984	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3985	elif [[ $localhost = nech ]]
3986	then
3987	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3988	fi
3989	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3990	fi
3991	else
3992	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3993	fi
3994
3995
3996	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3997	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3998	if [[ $files_for_pes = false ]]
3999	then
4000	cat /dev/null > ${pathout[$i]}
4001	else
4002	mkdir -p ${pathout[$i]}
4003	fi
4004
4005	fi
4006
4007
4008	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4009	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4010	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4011	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4012	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4013	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4014	if [[ "${actionout[$i]}" = ar ]]
4015	then
4016	if [[ $files_for_pes = false ]]
4017	then
4018	printf "\n >>> OUTPUT: ${localout[$i]} to"
4019	printf "\n ${pathout[$i]}"
4020	printf "\n File will be copied to archive-system ($archive_system) !\n"
4021	else
4022	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4023	printf "\n ${pathout[$i]}"
4024	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4025	fi
4026	mv ${localout[$i]} ${frelout[$i]}
4027
4028	file_saved=false
4029
4030	if [[ $archive_system = asterix ]]
4031	then
4032	do_stageout=true
4033	(( stageout_anz = 0 ))
4034	while [[ $do_stageout = true ]]
4035	do
4036	if [[ $files_for_pes = false ]]
4037	then
4038	stageout ${frelout[$i]} > STAGE_OUTPUT
4039	else
4040	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4041	fi
4042	cat STAGE_OUTPUT
4043	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4044	then
4045	file_saved=true
4046	do_stageout=false
4047	else
4048	if [[ $files_for_pes = false ]]
4049	then
4050	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4051	else
4052	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4053	fi
4054	(( stageout_anz = stageout_anz + 1 ))
4055	if (( stageout_anz == 10 ))
4056	then
4057	printf "\n +++ stoped after 10 unsuccessful tries!"
4058	archive_save=false
4059	do_stageout=false
4060	else
4061	printf "\n *** new try to store on archive after 15 min:"
4062	sleep 900
4063	fi
4064	fi
4065	done
4066	elif [[ $archive_system = DMF ]]
4067	then
4068	if [[ $files_for_pes = false ]]
4069	then
4070	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4071	locat=DMF
4072	exit
4073	else
4074	rm -rf $ARCHIVE/${frelout[$i]}
4075	cp -r ${frelout[$i]} $ARCHIVE
4076	fi
4077	file_saved=true
4078	elif [[ $archive_system = tivoli ]]
4079	then
4080	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4081	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4082	# GELEGT WERDEN
4083	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4084	chmod g+rx $tmp_data_catalog
4085	if [[ $files_for_pes = false ]]
4086	then
4087	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4088	else
4089	mkdir $tmp_data_catalog/${frelout[$i]}
4090	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4091	fi
4092
4093	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4094	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4095	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4096	if [[ $files_for_pes = false ]]
4097	then
4098	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4099	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4100	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4101	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4102	else
4103	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4104	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4105	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4106	fi
4107
4108	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4109	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4110	file_saved=true
4111
4112	elif [[ $archive_system = ut ]]
4113	then
4114	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4115	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4116	# GELEGT WERDEN
4117	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4118	chmod g+rx $tmp_data_catalog
4119	if [[ $files_for_pes = false ]]
4120	then
4121	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4122	else
4123	mkdir $tmp_data_catalog/${frelout[$i]}
4124	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4125	fi
4126
4127	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4128	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4129	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4130	if [[ $files_for_pes = false ]]
4131	then
4132	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4133	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4134	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4135	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4136	else
4137	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4138	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4139	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4140	fi
4141
4142	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4143	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4144	file_saved=true
4145
4146	else
4147	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4148	archive_save=false
4149	fi
4150	if [[ $file_saved = true ]]
4151	then
4152	if [[ $files_for_pes = false ]]
4153	then
4154	cat /dev/null > ${pathout[$i]}
4155	else
4156	mkdir -p ${pathout[$i]}
4157	fi
4158	fi
4159	fi
4160
4161	# APPEND AUF LOKALER MASCHINE
4162	if [[ "${actionout[$i]}" = "a" ]]
4163	then
4164	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4165	cat ${localout[$i]} >> ${pathout[$i]}
4166	fi
4167
4168	# KOPIEREN AUF LOKALER MASCHINE
4169	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4170	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4171	then
4172
4173	# KOPIEREN AUF EINPROZESSORMASCHINE
4174	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4175	then
4176	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4177	if [[ $link_local_output = true ]]
4178	then
4179	printf " using ln -f\n"
4180	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4181	fi
4182	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4183	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4184	then
4185	if [[ $link_local_output = true ]]
4186	then
4187	printf " ln failed, using cp...\n"
4188	fi
4189	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4190	fi
4191	else
4192	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4193	if [[ $link_local_output = true ]]
4194	then
4195	printf " using ln -f\n"
4196	ln -f ${localout[$i]} ${pathout[$i]}
4197	fi
4198	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4199	if [[ ! -f "${pathout[$i]}" ]]
4200	then
4201	if [[ $link_local_output = true ]]
4202	then
4203	printf " ln failed, using cp...\n"
4204	fi
4205	cp ${localout[$i]} ${pathout[$i]}
4206	fi
4207	fi
4208
4209	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4210	then
4211
4212	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4213	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4214	# WIRD DANN KOPIERT
4215	# PER MOVE UMBENANNT WERDEN
4216	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4217	if [[ $link_local_output = true ]]
4218	then
4219	printf " using ln -f\n"
4220	mkdir ${pathout[$i]}
4221	cd ${localout[$i]}
4222	for file in $(ls *)
4223	do
4224	ln -f $file ${pathout[$i]}
4225	done
4226	cd $TEMPDIR
4227	fi
4228	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4229	if [[ ! -f "${pathout[$i]}/_0000" ]]
4230	then
4231	if [[ $link_local_output = true ]]
4232	then
4233	printf " ln failed for .../_0000, using cp...\n"
4234	fi
4235	cp -r ${localout[$i]} ${pathout[$i]}
4236	fi
4237
4238	fi
4239	fi
4240	done
4241	if (( i != 0 ))
4242	then
4243	if [[ $transfer_problems = true ]]
4244	then
4245	printf "\n$striche\n *** OUTPUT-files saved"
4246	printf "\n +++ WARNING: some data transfers failed! \n"
4247	else
4248	printf "\n$striche\n *** all OUTPUT-files saved \n"
4249	fi
4250	fi
4251
4252
4253	# EVENTUELL FOLGEJOB STARTEN
4254	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4255	if [[ -f CONTINUE_RUN ]]
4256	then
4257
4258	if [[ $archive_save = true ]]
4259	then
4260
4261	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4262	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4263	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4264	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4265	# HANDEN
4266	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4267	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4268	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4269	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4270	then
4271	mc=`echo $mc \| sed 's/#/f/g'`
4272	fi
4273
4274
4275	# JOB STARTEN
4276	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4277	echo " $mc"
4278	printf "\n$striche\n"
4279	if [[ $localhost != $fromhost ]]
4280	then
4281
4282	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4283	then
4284	echo "*** ssh will be used to initiate restart-runs!"
4285	echo " return_addres=\"$return_addres\" "
4286	echo " return_username=\"$return_username\" "
4287	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4288	then
4289	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4290	else
4291	if [[ $localhost = ibmkisti ]]
4292	then
4293	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4294	else
4295	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4296	fi
4297	fi
4298	else
4299	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4300	locat=restart; exit
4301	fi
4302
4303	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4304	# DER AKTUELLE JOB ENDET
4305	if [[ $queue = special1q ]]
4306	then
4307	sleep 120
4308	else
4309	sleep 30
4310	fi
4311
4312	else
4313
4314	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4315	# RUFEN WERDEN, AUSSER AUF lcfimm
4316	cd $LOCAL_PWD
4317	if [[ $localhost = lcfimm ]]
4318	then
4319	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4320	else
4321	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4322	fi
4323	cd - > /dev/null
4324	fi
4325	printf "\n$striche\n *** restart-run initiated \n"
4326
4327
4328	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4329	# GEHOLT WORDEN SIND, LOESCHEN
4330	(( i = 0 ))
4331	while (( i < iin ))
4332	do
4333	(( i = i + 1 ))
4334	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4335	then
4336	rm -r $tmp_data_catalog/${frelin[$i]}
4337	fi
4338	done
4339
4340	else
4341
4342	printf "\n +++ no restart-run possible, since errors occured"
4343	printf "\n during the archive process"
4344	fi
4345
4346	fi
4347
4348
4349
4350	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4351	if [[ "$email_notification" != "none" ]]
4352	then
4353
4354	if [[ $localhost != $fromhost ]]
4355	then
4356	if [[ -f CONTINUE_RUN ]]
4357	then
4358	echo "PALM restart run necessary" > email_text
4359	echo "description header of actual run:" >> email_text
4360	cat CONTINUE_RUN >> email_text
4361	echo "mrun-command to restart:" >> email_text
4362	echo "$mc" >> email_text
4363	else
4364	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4365	fi
4366	mail $email_notification < email_text
4367	printf "\n *** email notification sent to \"$email_notification\" "
4368	fi
4369	fi
4370
4371
4372
4373	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4374	cd $HOME
4375	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4376
4377	else
4378
4379
4380	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4381	# CHENDE AKTIONEN DURCHGEFUEHRT
4382
4383	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4384	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4385	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4386	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4387	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4388	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4389	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4390	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4391	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4392	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4393	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4394	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4395	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4396	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4397	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4398	if [[ $use_openmp = true ]]
4399	then
4400	mrun_com=${mrun_com}" -O $threads_per_task"
4401	fi
4402	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4403	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4404	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4405	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4406	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4407	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4408	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4409	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4410	if [[ $do_remote = true ]]
4411	then
4412	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4413	fi
4414
4415
4416	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4417	jobfile=jobfile.$RANDOM
4418
4419
4420	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4421	echo "mkdir $TEMPDIR" >> $jobfile
4422	echo "cd $TEMPDIR" >> $jobfile
4423
4424
4425	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4426	if [[ $do_trace = true ]]
4427	then
4428	echo "set -x" >> $jobfile
4429	else
4430	echo "set +vx" >> $jobfile
4431	fi
4432
4433
4434	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4435	# DATEI FUER DEN JOB
4436	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4437	then
4438
4439	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4440	# KOPIEREN
4441	if [[ $restart_run != true ]]
4442	then
4443	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4444	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4445	fi
4446
4447	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4448	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4449	echo "set -x" >> $jobfile
4450	if [[ $host = $localhost ]]
4451	then
4452	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4453	else
4454	if [[ $host != ibmkisti ]]
4455	then
4456	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4457	else
4458	# on KISTI's IBM firewall is only opened on interactive node
4459	echo "localdir=\`pwd\`" >> $jobfile
4460	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4461	fi
4462	fi
4463	echo "export SOURCES_COMPLETE=true" >> $jobfile
4464
4465	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4466	# ARBEITSVERZEICHNIS VERSCHIEBEN
4467	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4468	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4469	echo "execute_mrun=true" >> $jobfile
4470	echo " " >> $jobfile
4471
4472	else
4473
4474	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4475	# SOWIE GEGEBENENFALLS DES MAKEFILES
4476	if [[ $do_compile = true ]]
4477	then
4478
4479	source_catalog=SOURCES_FOR_RUN_$fname
4480
4481	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4482	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4483	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4484	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4485	echo "export SOURCES_COMPLETE=true" >> $jobfile
4486	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4487
4488	for filename in $source_list
4489	do
4490	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4491	echo "cat > $filename << \"%END%\"" >> $jobfile
4492	cat $source_catalog/$filename >> $jobfile
4493	echo " " >> $jobfile
4494	echo "%END%" >> $jobfile
4495	echo " " >> $jobfile
4496	done
4497
4498	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4499	echo "cat > Makefile << \"%END%\"" >> $jobfile
4500	cat $source_catalog/Makefile >> $jobfile
4501	echo " " >> $jobfile
4502	echo "%END%" >> $jobfile
4503	echo " " >> $jobfile
4504
4505	echo "cd - > /dev/null" >> $jobfile
4506
4507	fi
4508
4509
4510	# ABSPEICHERN DER KONFIGURATIONSDATEI
4511	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4512	echo "cat > $config_file << \"%END%\"" >> $jobfile
4513	cat $config_file >> $jobfile
4514	echo "%END%" >> $jobfile
4515	echo " " >> $jobfile
4516
4517
4518	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4519	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4520	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4521	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4522	echo "%END%" >> $jobfile
4523	echo "chmod u+x $mrun_script_name" >> $jobfile
4524	echo "execute_mrun=true" >> $jobfile
4525	echo " " >> $jobfile
4526
4527	fi
4528
4529
4530	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4531	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4532	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4533	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4534	if [[ $do_remote = true ]]
4535	then
4536	(( i = 0 ))
4537	while (( i < iin ))
4538	do
4539	(( i = i + 1 ))
4540	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4541	if [[ "${transin[$i]}" = job ]]
4542	then
4543	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4544	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4545	echo " " >> $jobfile
4546	echo "%END%" >> $jobfile
4547	else
4548	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4549	fi
4550
4551	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4552	echo "if [[ \$? = 1 ]]" >> $jobfile
4553	echo "then" >> $jobfile
4554	echo " echo \" \" " >> $jobfile
4555	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4556	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4557	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4558	echo " execute_mrun=false" >> $jobfile
4559	echo "fi" >> $jobfile
4560	done
4561	fi
4562
4563	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4564	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4565	echo "LOCAL_PWD=$working_directory" >> $jobfile
4566	echo "export LOCAL_PWD" >> $jobfile
4567
4568	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4569	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4570	echo "export LOCAL_MRUN_PATH" >> $jobfile
4571
4572	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4573	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4574	then
4575	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4576	fi
4577
4578	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4579	echo "set -x" >> $jobfile
4580	echo "queue=$queue" >> $jobfile
4581	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4582
4583	echo 'ls -al; echo `pwd`' >> $jobfile
4584	echo "cd \$HOME" >> $jobfile
4585	echo "rm -rf $TEMPDIR" >> $jobfile
4586
4587
4588
4589
4590	# JOB PER SUBJOB STARTEN
4591	if [[ $silent = false ]]
4592	then
4593	printf "\n "
4594	else
4595	printf "\n\n"
4596	fi
4597
4598	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4599	rm -rf $jobfile
4600
4601
4602	fi # ENDE REMOTE-TEIL
4603
4604
4605
4606	# ENDE DER PROZEDUR

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