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source: palm/trunk/SCRIPTS/mrun @ 844

Last change on this file since 844 was 841, checked in by maronga, 13 years ago
further adjustments and bugfixes for the namelist file check
Property svn:keywords set to `Id Rev`
File size: 187.6 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 841 2012-02-28 12:29:49Z gryschka $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250	# 22/02/12 - Siggi - -s info updated
251	# 22/02/12 - Siggi - case "-s WP" removed
252	# 28/02/12 - BjornM - further adjustments for namelist file check
253
254
255
256	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
257
258	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
259	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
260	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
261
262	AddFilenames=""
263	additional_conditions=""
264	add_source_path=""
265	afname=""
266	archive_save=true
267	archive_system=none
268	check_namelist_files=true
269	compiler_name=""
270	cond1=""
271	cond2=""
272	config_file=.mrun.config
273	coupled_dist=""
274	coupled_mode="mpi1"
275	cpp_opts=""
276	cpp_options=""
277	cpumax=0
278	cpurest=0
279	delete_temporary_catalog=true
280	do_batch=false
281	do_compile=true
282	do_remote=false
283	do_stagein=true
284	do_stageout=true
285	do_trace=false
286	email_notification="none"
287	exclude=""
288	executable=""
289	execution_error=false
290	fimm=false
291	fname=test
292	fromhost=""
293	global_revision=""
294	group_number=none
295	host=""
296	host_file=""
297	hp=""
298	ignore_archive_error=false
299	input_list=""
300	interpreted_config_file=""
301	job_catalog="~/job_queue"
302	job_on_file=""
303	keep_data_from_previous_run=false
304	link_local_input=false
305	link_local_output=false
306	localhost_realname=$(hostname)
307	local_compile=false
308	local_dvrserver_running=.FALSE.
309	locat=normal
310	mainprog=""
311	makefile=""
312	max_par_io_str=""
313	mc=$0
314	while [[ $(echo $mc \| grep -c "/") != 0 ]]
315	do
316	mc=`echo $mc \| cut -f2- -d"/"`
317	done
318	module_calls=""
319	mrun_script_name=$mc
320	netcdf_inc=""
321	netcdf_lib=""
322	netcdf_support=false
323	node_usage=default
324	numprocs=""
325	numprocs_atmos=0
326	numprocs_ocean=0
327	OOPT=""
328	openmp=false
329	output_list=""
330	package_list=""
331	punkte="..........................................................."
332	p3d_suffix=""
333	queue=none
334	read_from_config=""
335	restart_run=false
336	if [[ `hostname` = rte10 ]]
337	then
338	return_addres=133.5.185.60
339	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
340	elif [[ `hostname` = climate0 ]]
341	then
342	return_addres=165.132.26.68
343	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
344	else
345	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
346	fi
347	return_password=""
348	return_username=$LOGNAME
349	remotecall=false
350	remote_username=""
351	run_coupled_model=false
352	run_mode=""
353	scirocco=false
354	store_on_archive_system=false
355	striche=" ----------------------------------------------------------------------------"
356	silent=false
357	source_list=""
358	source_path=SOURCE
359	tasks_per_node=""
360	threads_per_task=1
361	tmpcreate=false
362	tmp_data_catalog=""
363	transfer_problems=false
364	usern=$LOGNAME
365	use_openmp=false
366	working_directory=`pwd`
367	TOPT=""
368	XOPT=""
369	zeit=$( date \| cut -c 12-19 )
370
371	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
372	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
373
374	typeset -R30 calltime
375	typeset -L20 spalte1
376	typeset -L40 spalte2
377	typeset -L60 spalte3
378	typeset -L35 string1=`date`
379	typeset -L12 string2=$usern
380	typeset -L12 string3=$localhost_realname
381	typeset -L12 string4
382	typeset -L12 string5
383	typeset -L30 version="MRUN 2.0 Rev$Rev: 841 $"
384
385
386
387	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
388	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
389
390	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
391	# EXPORTIERT WERDEN
392	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
393	export group_number input_list memory numprocs output_list queue run_mode
394
395
396
397	# FEHLERBEHANDLUNG
398	# BEI EXIT:
399	trap 'rm -rf $working_directory/tmp_mrun
400	if [[ $locat != localhost ]]
401	then
402	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
403	# then
404	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
405	#MRUN-calls on $localhost
406	#
407	#date and time user localhost remotehost termination mrun-command
408	#--------------------------------------------------------------------------------------------------------------------
409	#%STATEND%
410	# chmod 666 ${mrun_path}/statistik/mrun_statistik
411	# fi
412	#
413	# # EINTRAG IN DIE STATISTIK-DATEI
414	# string4=$host
415	# string5=$locat
416	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
417	# then
418	# if [[ $do_batch = true ]]
419	# then
420	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
421	# else
422	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
423	# fi
424	# fi
425	echo " " > /dev/null
426	fi
427
428	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
429	then
430
431	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
432	(( i = 0 ))
433	while (( i < iec ))
434	do
435	(( i = i + 1 ))
436	printf "\n *** Execution of ERROR-command:\n"
437	printf " >>> ${err_command[$i]}\n"
438	eval ${err_command[$i]}
439	done
440	if [[ -n $interpreted_config_file ]] then
441	rm -rf $interpreted_config_file
442	fi
443	if [[ -n .mrun_environment ]] then
444	rm -rf .mrun_environment
445	fi
446	if [[ $tmpcreate = true ]]
447	then
448	printf "\n *** Contents of \"$TEMPDIR\":\n"
449	ls -al; cd
450	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
451	fi
452	if [[ "$dvrserver_id" != "" ]]
453	then
454	echo "+++ killing dvrserver_id=$dvrserver_id"
455	kill $dvrserver_id
456	fi
457	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
458	then
459	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
460	fi
461	printf "\n\n+++ MRUN killed \n\n"
462	elif [[ $locat != control_c ]]
463	then
464	printf "\n\n --> all actions finished\n\n"
465	printf " Bye, bye $usern !!\n\n"
466	fi' exit
467
468
469	# BEI TERMINAL-BREAK:
470	trap 'rm -rf $working_directory/tmp_mrun
471	rm -rf $working_directory/tmp_check_namelist_files
472	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
473	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
474	then
475	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
476	fi
477	if [[ "$dvrserver_id" != "" ]]
478	then
479	echo "+++ killing dvrserver_id=$dvrserver_id"
480	kill $dvrserver_id
481	fi
482	printf "\n+++ MRUN killed by \"^C\" \n\n"
483	locat=control_c
484	exit
485	' 2
486
487
488	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
489	# BEEN SET
490	if [[ "$PALM_BIN" = "" ]]
491	then
492	printf "\n +++ environment variable PALM_BIN has not been set"
493	printf "\n please set it to the directory where the PALM scripts are located"
494	locat=palm_bin; exit
495	fi
496	export PATH=$PALM_BIN:$PATH
497
498
499
500	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
501	# FUER FOLGEJOBS BENOETIGT WIRD
502	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
503	do
504	case $option in
505	(a) afname=$OPTARG;;
506	(A) store_on_archive_system=true; mc="$mc -A";;
507	(b) do_batch=true; mc="$mc -b";;
508	(B) delete_temporary_catalog=false; mc="$mc -B";;
509	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
510	(C) restart_run=true; mc="$mc -C";;
511	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
512	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
513	(F) job_on_file="-D"; mc="$mc -F";;
514	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
515	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
516	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
517	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
518	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
519	(I) ignore_archive_error=true; mc="$mc -I";;
520	(k) keep_data_from_previous_run=true; mc="$mc -k";;
521	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
522	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
523	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
524	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
525	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
526	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
527	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
528	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
529	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
530	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
531	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
532	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
533	(S) read_from_config=false; mc="$mc -S";;
534	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
535	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
536	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
537	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
538	(v) silent=true; mc="$mc -v";;
539	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
540	(x) do_trace=true;set -x; mc="$mc -x";;
541	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
542	(y) ocean_file_appendix=true; mc="$mc -y";;
543	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
544	(z) check_namelist_files=false; mc="$mc -z";;
545	(\?) printf "\n +++ unknown option $OPTARG \n"
546	printf "\n --> type \"$0 ?\" for available options \n"
547	locat=parameter;exit;;
548	esac
549	done
550
551
552	# EVTL. POSITIONSPARAMETER EINLESEN
553	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
554	shift OPTIND-1
555
556
557	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
558	if [[ "$1" = "?" ]]
559	then
560	(printf "\n *** mrun can be called as follows:\n"
561	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
562	printf "\n Description of available options:\n"
563	printf "\n Option Description Default-Value"
564	printf "\n -a base name of input files equiv. -d"
565	printf "\n -A archiving when using file-attribute fl"
566	printf "\n -b batch-job on local machine ---"
567	printf "\n -B do not delete temporary directory at end ---"
568	printf "\n -c configuration file .mrun.config"
569	printf "\n -d base name of files attached to program test"
570	printf "\n -D preprocessor(cpp)-directives \"\" "
571	printf "\n -F create remote job file only ---"
572	printf "\n -h execution host $localhost_realname"
573	printf "\n -i INPUT control list \"\" "
574	printf "\n -I archiving errors of previous batch-jobs"
575	printf "\n will be ignored"
576	printf "\n -k keep data from previous run"
577	printf "\n -K additional conditions for controling"
578	printf "\n usage of conditional code and"
579	printf "\n env-variables in configuration file \"\" "
580	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
581	printf "\n -M Makefile name Makefile"
582	printf "\n -n node usage (shared/not_shared) depending on -h"
583	printf "\n -o OUTPUT control list \"\" "
584	printf "\n -O use OpenMP ---"
585	printf "\n -p software package list \"\" "
586	printf "\n -q queue \"$queue\" "
587	printf "\n -r run control list (combines -i -o) \"\" "
588	printf "\n -s filenames of routines to be compiled \"\" "
589	printf "\n must end with .f, .f90, .F, or .c !"
590	printf "\n use \"..\" for more than one file and wildcards"
591	printf "\n -s LM compiles all locally modified files"
592	printf "\n -S config file interpreted by shellscript ---"
593	printf "\n -t allowed cpu-time in seconds (batch) 0"
594	printf "\n -T tasks per node depending on -h"
595	printf "\n -u username on remote machine \"\" "
596	printf "\n -v no prompt for confirmation ---"
597	printf "\n -w maximum parallel io streams as given by -X"
598	printf "\n -x tracing of mrun for debug purposes ---"
599	printf "\n -X # of processors (on parallel machines) 1"
600	printf "\n -y add appendix \"_O\" to all local output"
601	printf "\n files (ocean precursor runs followed by"
602	printf "\n coupled atmosphere-ocean runs) ---"
603	printf "\n -Y run coupled model, \"#1 #2\" with"
604	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
605	printf "\n -z no parameter file check ---"
606	printf "\n "
607	printf "\n Possible values of positional parameter <modus>:"
608	printf "\n \"?\" - this outline \n\n") \| more
609	exit
610	elif [[ "$1" != "" ]]
611	then
612	printf "\n +++ positional parameter $1 unknown \n"
613	locat=parameter; exit
614	fi
615
616
617
618	# KURZE STARTMELDUNG
619	printf "\n*** $version "
620	printf "\n will be executed. Please wait ..."
621
622
623
624	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
625	if [[ ! -f $config_file ]]
626	then
627	printf "\n\n +++ configuration file: "
628	printf "\n $config_file"
629	printf "\n does not exist"
630	locat=connect; exit
631	fi
632
633
634	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
635	line=""
636	grep "%host_identifier" $config_file > tmp_mrun
637	while read line
638	do
639	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
640	then
641	HOSTNAME=`echo $line \| cut -d" " -s -f2`
642	host_identifier=`echo $line \| cut -d" " -s -f3`
643	if [[ $localhost_realname = $HOSTNAME ]]
644	then
645	localhost=$host_identifier
646	break
647	fi
648	fi
649	done < tmp_mrun
650
651	if [[ "$localhost" = "" ]]
652	then
653	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
654	printf "\n for local host \"$localhost_realname\"."
655	printf "\n Please add line"
656	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
657	printf "\n to the configuration file."
658	locat=localhost; exit
659	fi
660
661
662	# HOSTSPEZIFISCHE VARIABLEN SETZEN
663	case $localhost_realname in
664	(r1\|r2\|h01\|b01) archive_system=tivoli;;
665	(cs*) archive_system=ut;;
666	(fimm.bccs.uib.no) fimm=true;;
667	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
668	(scirocco) scirocco=true;;
669	esac
670
671
672
673	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
674	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
675	[[ "$afname" = "" ]] && afname=$fname
676
677
678	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
679	if [[ "$run_mode" != "" ]]
680	then
681	input_list="$input_list $run_mode"
682	output_list="$output_list $run_mode"
683	fi
684
685
686	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
687	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
688	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
689	# STARTET)
690	if [[ "$fromhost" = "" ]]
691	then
692	fromhost=$localhost
693	fi
694
695
696	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
697	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
698	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
699	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
700	if [[ -n $host && "$host" != $localhost ]]
701	then
702	do_batch=true
703	do_remote=true
704	case $host in
705	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
706	(*) printf "\n"
707	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
708	printf "\n is not available"
709	locat=nqs; (( iec = 0 )); exit;;
710	esac
711	else
712	host=$localhost
713	fi
714
715
716	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
717	if [[ -n $additional_conditions ]]
718	then
719	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
720	cond1=`echo $additional_conditions \| cut -d" " -f1`
721	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
722	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
723	if [[ -n $dummy ]]
724	then
725	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
726	locat=options; exit
727	fi
728	block=_$cond1
729	[[ -n $cond2 ]] && block=${block}_$cond2
730	fi
731
732
733	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
734	if [[ $run_coupled_model = true ]]
735	then
736
737	if [[ -n $coupled_dist ]]
738	then
739
740	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
741	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
742
743	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
744	then
745
746	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
747	printf "\n PEs (total) : $numprocs"
748	printf "\n PEs (atmosphere): $numprocs_atmos"
749	printf "\n PEs (ocean) : $numprocs_ocean"
750	locat=coupling; exit
751
752	fi
753
754	else
755
756	(( numprocs_ocean = $numprocs / 2 ))
757	(( numprocs_atmos = $numprocs / 2 ))
758
759	fi
760	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
761
762	# GET coupled_mode FROM THE CONFIG FILE
763	line=""
764	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
765	while read line
766	do
767	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
768	then
769	coupled_mode="mpi2"
770	fi
771	done < tmp_mrun
772
773	fi
774
775
776	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
777	# ARCHIVIERUNG FEHLGESCHLAGEN IST
778	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
779	then
780	if [[ $ignore_archive_error = false ]]
781	then
782	printf "\n +++ data archiving of previous run failed"
783	printf "\n see directory \~/job_queue on remote machine"
784	locat=archive; exit
785	else
786	printf "\n +++ warning: data archiving in a previous run failed"
787	printf "\n MRUN continues, trying to get backup copy"
788	fi
789	fi
790
791
792
793	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
794	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
795	if [[ "$read_from_config" = false ]]
796	then
797
798	[[ $silent = false ]] && printf "\n Reading the configuration file... "
799	while read zeile
800	do
801	[[ $silent = false ]] && printf "."
802
803
804	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
805	# ERSETZEN
806	eval zeile=\"$zeile\"
807
808
809	# INTERPRETATION DER ZEILE
810	if [[ "$(echo $zeile)" = "" ]]
811	then
812	# LEERZEILE, KEINE AKTION
813	continue
814
815	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
816	then
817
818	# ZEILE IST KOMMENTARZEILE
819	true
820
821	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
822	then
823
824	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
825	zeile=$(echo $zeile \| cut -c2-)
826	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
827	var=`echo $zeile \| cut -d" " -f1`
828	value=`echo $zeile \| cut -d" " -s -f2`
829	for_host=`echo $zeile \| cut -d" " -s -f3`
830	for_cond1=`echo $zeile \| cut -d" " -s -f4`
831	for_cond2=`echo $zeile \| cut -d" " -s -f5`
832
833	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
834	then
835
836	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
837	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
838	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
839
840
841	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
842	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
843	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
844	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
845	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
846	# KONFIGURATIONSDATEI
847	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
848	then
849	eval $var=\$value
850
851	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
852	if [[ $do_trace = true ]]
853	then
854	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
855	fi
856	fi
857
858	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
859	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
860	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
861	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
862	if [[ $var = host ]]
863	then
864	if [[ -n $host && "$host" != $localhost ]]
865	then
866	do_batch=true
867	do_remote=true
868	case $host in
869	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
870	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
871	printf "\n is not available"
872	locat=nqs; exit;;
873	esac
874	else
875	host=$localhost
876	fi
877	fi
878
879	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
880	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
881	# DEN PROGRAMMEN BENOETIGT WERDEN
882	export $var
883	fi
884
885
886
887
888	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
889	then
890
891	# ZEILE DEFINIERT ERROR-KOMMANDO
892	(( iec = iec + 1 ))
893	zeile=$(echo $zeile \| cut -c4-)
894	err_command[$iec]="$zeile"
895
896	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
897	then
898
899	# ZEILE DEFINIERT INPUT-KOMMANDO
900	(( iic = iic + 1 ))
901	zeile=$(echo $zeile \| cut -c4-)
902	in_command[$iic]="$zeile"
903
904	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
905	then
906
907	# ZEILE DEFINIERT OUTPUT-KOMMANDO
908	(( ioc = ioc + 1 ))
909	zeile=$(echo $zeile \| cut -c4-)
910	out_command[$ioc]="$zeile"
911
912	else
913
914	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
915	# s2a: in/out - Feld
916	# s2b: loc - Feld (optional)
917	# s2c: tr/ar - Feld (optional)
918	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
919	s1=`echo $zeile \| cut -d" " -f1`
920	s2=`echo $zeile \| cut -d" " -s -f2`
921	s2a=$(echo $s2 \| cut -d":" -f1)
922	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
923	then
924	s2b=""
925	s2c=""
926	else
927	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
928	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
929	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
930	fi
931	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
932	s3=`echo $zeile \| cut -d" " -f3`
933	s4=`echo $zeile \| cut -d" " -s -f4`
934	s5=`echo $zeile \| cut -d" " -s -f5`
935	s6=`echo $zeile \| cut -d" " -s -f6`
936
937
938	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
939	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
940	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
941	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
942	# HANDEN SEIN MUSS (D.H. s2b = loc)
943	IFSALT="$IFS"; IFS="$IFS:"
944	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
945	then
946	found=false
947	for actual in $input_list
948	do
949	for formal in $s3
950	do
951	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
952	done
953	done
954	if [[ $found = true ]]
955	then
956	(( iin = iin + 1 ))
957	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
958	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
959	extin[$iin]=$s6
960	fi
961	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
962	then
963	found=false
964	for actual in $output_list
965	do
966	for formal in $s3
967	do
968	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
969	done
970	done
971	if [[ $found = true ]]
972	then
973	(( iout = iout + 1 ))
974	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
975	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
976	fi
977	elif [[ "$s2a" != in && "$s2a" != out ]]
978	then
979	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
980	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
981	locat=connect; exit
982	fi
983	IFS="$IFSALT"
984	fi
985	done < $config_file
986
987	else
988
989
990	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
991	[[ $silent = false ]] && printf "..."
992	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
993	export interpreted_config_file=.icf.$RANDOM
994
995
996
997	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
998	# VERFUEGUNG STELLEN
999	cat > .mrun_environment << %%END%%
1000	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1001	config_file = '$config_file', do_remote = '$do_remote',
1002	do_trace = '$do_trace', host = '$host',
1003	input_list = '$input_list', icf = '$interpreted_config_file',
1004	localhost = '$localhost', output_list = '$output_list' /
1005
1006	%%END%%
1007
1008	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1009	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1010	mrun_memory=$memory
1011	mrun_group_number=$group_number
1012	mrun_cpumax=$cpumax
1013	mrun_numprocs=$numprocs
1014
1015	if [[ $localhost_realname = "sx-fep" ]]
1016	then
1017	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1018	else
1019
1020	if [[ "$host" != $localhost ]]
1021	then
1022
1023	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1024	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1025	if [[ $? != 0 ]]
1026	then
1027	printf "\n\n +++ no interpret_config found"
1028	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1029	locat=interpret_config; exit
1030	fi
1031	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1032	$interpret_config_executable
1033
1034	else
1035
1036	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1037	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1038	then
1039	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1040	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1041	locat=interpret_config; exit
1042	else
1043	interpret_config${block}.x
1044	fi
1045
1046	fi
1047	fi
1048	rm .mrun_environment
1049
1050
1051	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1052	chmod u+x $interpreted_config_file
1053	export PATH=$PATH:.
1054	. $interpreted_config_file
1055	rm $interpreted_config_file
1056
1057
1058	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1059	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1060	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1061	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1062	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1063	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1064	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1065
1066	fi
1067
1068
1069	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1070	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1071	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1072	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1073	if [[ "$SOURCES_COMPLETE" = "" ]]
1074	then
1075
1076	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1077	# VEREINBART WURDE
1078	source_path=""
1079	line=""
1080	grep "%source_path" $config_file > tmp_mrun
1081	while read line
1082	do
1083	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1084	then
1085	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1086	then
1087	global_source_path=`echo $line \| cut -d" " -f2`
1088	fi
1089	fi
1090	done < tmp_mrun
1091
1092	line=""
1093	found=false
1094	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1095	while read line
1096	do
1097	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1098	then
1099	if [[ $found = true ]]
1100	then
1101	printf "\n\n +++ more than one source path found in configuration file"
1102	printf "\n for local host \"$localhost\" "
1103	locat=source_path; exit
1104	fi
1105	source_path=`echo $line \| cut -d" " -f2`
1106	found=true
1107	fi
1108	done < tmp_mrun
1109	rm tmp_mrun
1110
1111	if [[ "$source_path" = "" ]]
1112	then
1113	if [[ "$global_source_path" != "" ]]
1114	then
1115	source_path=$global_source_path
1116	else
1117	printf "\n\n +++ no source path found in configuration file"
1118	printf "\n for local host \"$localhost\" "
1119	locat=source_path; exit
1120	fi
1121	fi
1122	eval source_path=$source_path
1123
1124	if [[ ! -d $source_path ]]
1125	then
1126	printf "\n\n +++ source path \"$source_path\" on local host"
1127	printf "\n \"$localhost\" does not exist"
1128	locat=source_path; exit
1129	fi
1130
1131	fi
1132
1133
1134	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1135	# DURCH OPTION -G MITGETEILT)
1136	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1137	then
1138	global_revision=`svnversion $source_path 2>/dev/null`
1139	global_revision="Rev: $global_revision"
1140	fi
1141
1142
1143	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1144	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1145	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1146	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1147	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1148	if [[ -n $host && "$host" != $localhost ]]
1149	then
1150	do_batch=true
1151	do_remote=true
1152	case $host in
1153	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1154	(*) printf "\n"
1155	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1156	printf "\n is not available"
1157	locat=nqs; (( iec = 0 )); exit;;
1158	esac
1159	else
1160	host=$localhost
1161	fi
1162
1163
1164	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1165	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1166	then
1167
1168	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1169	if [[ ! -n $numprocs ]]
1170	then
1171	printf "\n"
1172	printf "\n +++ option \"-K parallel\" requires additional specification"
1173	printf "\n of the number of processors to be used by"
1174	printf "\n mrun-option \"-X\" or by environment-variable"
1175	printf "\n \"numprocs\" in the configuration file"
1176	locat=numprocs; (( iec = 0 )); exit
1177	fi
1178
1179	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1180	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1181	# GESAMTPROZESSORANZAHL IST
1182	if [[ "$tasks_per_node" = "" ]]
1183	then
1184	printf "\n"
1185	printf "\n +++ option \"-T\" (tasks per node) is missing"
1186	printf "\n set -T option or define tasks_per_node in the config file"
1187	locat=tasks_per_node; (( iec = 0 )); exit
1188	fi
1189	(( ival = $tasks_per_node ))
1190	(( pes = numprocs ))
1191	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1192	# then
1193	# (( pes = pes - 1 ))
1194	# fi
1195	(( ii = pes / ival ))
1196	if (( pes - ii * ival > 0 ))
1197	then
1198	printf "\n"
1199	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1200	printf "\n divisor of the total number of processors (option \"-X\")"
1201	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1202	locat=tasks_per_node; (( iec = 0 )); exit
1203	fi
1204
1205
1206	# IBMY HAT NUR EINEN KNOTEN
1207	if [[ $host = ibmy ]]
1208	then
1209	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1210	then
1211	printf "\n"
1212	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1213	printf "\n total number of processors (option \"-X\")"
1214	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1215	locat=tasks_per_node; (( iec = 0 )); exit
1216	fi
1217	fi
1218
1219
1220	# SETTINGS FOR SUBJOB-COMMAND
1221	TOPT="-T $tasks_per_node"
1222	OOPT="-O $threads_per_task"
1223
1224	# GESAMTZAHL DER KNOTEN BESTIMMEN
1225	if [[ "$tasks_per_node" != "" ]]
1226	then
1227	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1228	fi
1229
1230	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1231	# SETZEN
1232	if [[ $node_usage = default ]]
1233	then
1234	if [[ $host = ibms ]]
1235	then
1236	node_usage=shared
1237	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1238	then
1239	node_usage=singlejob
1240	else
1241	node_usage=not_shared
1242	fi
1243	fi
1244
1245	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1246	then
1247	printf "\n"
1248	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1249	printf "\n \"shared\" or \"not_shared\""
1250	locat=tasks_per_node; (( iec = 0 )); exit
1251	fi
1252
1253	fi
1254
1255	# PRUEFEN, OB HOSTFILE EXISTIERT
1256	if [[ -n $hostfile ]]
1257	then
1258	if [[ ! -f $hostfile ]]
1259	then
1260	printf "\n"
1261	printf "\n +++ hostfile \"$hostfile\" does not exist"
1262	locat=hostfile; exit
1263	fi
1264	fi
1265
1266	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1267	if [[ $host = ibmy && $do_remote = false ]]
1268	then
1269	if [[ ! -f $HOME/.rhosts ]]
1270	then
1271	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1272	printf "\n\n *** file:"
1273	printf "\n $HOME/.rhosts"
1274	printf "\n was created\n"
1275	fi
1276	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1277	then
1278	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1279	printf "\n\n *** file:"
1280	printf "\n $HOME/.rhosts"
1281	printf "\n was extended by the name of the current host\n"
1282	fi
1283	fi
1284
1285
1286	# Set default value for the maximum number of parallel io streams
1287	if [[ "$maximum_parallel_io_streams" = "" ]]
1288	then
1289	maximum_parallel_io_streams=$numprocs
1290	fi
1291
1292
1293	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1294	if [[ $queue = none ]]
1295	then
1296	case $host in
1297	(ibmh) queue=no_class;;
1298	(ibmkisti) queue=class.32plus;;
1299	(ibmy) queue=parallel;;
1300	(lckyoto) queue=ph;;
1301	(lcsgib) queue=testq;;
1302	(lcsgih) queue=testq;;
1303	(lctit) queue=S;;
1304	(nech) queue=none;;
1305	(necriam) queue=SP;;
1306	(unics) queue=unics;;
1307	esac
1308	fi
1309
1310
1311	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1312	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1313	# ERMITTELN
1314	(( i = 0 ))
1315	while (( i < iin ))
1316	do
1317	(( i = i + 1 ))
1318	(( maxcycle = 0 ))
1319
1320	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1321	if [[ "${actionin[$i]}" = di ]]
1322	then
1323	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1324	# REM-MASCHINE AUSWERTEN
1325	eval filename=${pathin[$i]}/${endin[$i]}
1326	else
1327	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1328	# REM-MASCHINE AUSWERTEN
1329	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1330	fi
1331
1332	# PRUEFEN AUF VORHANDENSEIN
1333	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1334	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1335	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1336	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1337	then
1338	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1339	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1340	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1341	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1342	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1343	if [[ "${transin[$i]}" != "locopt" ]]
1344	then
1345	printf "\n\n +++ INPUT-file: "
1346	if [[ "${extin[$i]}" = "" ]]
1347	then
1348	printf "\n $filename"
1349	else
1350	printf "\n $filename.${extin[$i]}"
1351	fi
1352	printf "\n does not exist\n"
1353	locat=input; exit
1354	else
1355	transin[$i]="unavailable"
1356	fi
1357	else
1358
1359	# ZYKLUSNUMMER FESTSTELLEN
1360	ls -1 -d $filename > filelist 2>/dev/null
1361	ls -1 -d $filename.* >> filelist 2>/dev/null
1362	while read zeile
1363	do
1364	cycle=$(print $zeile \| cut -f2 -d".")
1365	if [[ "$cycle" = "$zeile" ]]
1366	then
1367	(( icycle = 0 ))
1368	elif [[ "$cycle" = "${extin[$i]}" ]]
1369	then
1370	(( icycle = 0 ))
1371	else
1372	(( icycle = $cycle ))
1373	fi
1374	if (( icycle > maxcycle ))
1375	then
1376	(( maxcycle = icycle ))
1377	file_to_be_used=$zeile
1378	fi
1379	done <filelist
1380	rm filelist
1381
1382	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1383	if (( maxcycle > 0 ))
1384	then
1385	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1386	then
1387	filename=${filename}.$maxcycle.${extin[$i]}
1388	else
1389	filename=${filename}.$maxcycle
1390	fi
1391	else
1392	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1393	then
1394	filename=${filename}.${extin[$i]}
1395	fi
1396	fi
1397
1398	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1399	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1400	absnamein[$i]=$filename
1401	if (( maxcycle > 0 ))
1402	then
1403	if [[ "${actionin[$i]}" = di ]]
1404	then
1405	frelin[$i]=${endin[$i]}.$maxcycle
1406	else
1407	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1408	fi
1409	else
1410	if [[ "${actionin[$i]}" = di ]]
1411	then
1412	frelin[$i]=${endin[$i]}
1413	else
1414	frelin[$i]=${afname}${endin[$i]}
1415	fi
1416	fi
1417
1418	fi
1419	done
1420
1421
1422	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1423	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1424	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1425	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1426	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1427	(( i = 0 ))
1428	while (( i < iout ))
1429	do
1430	(( i = i + 1 ))
1431	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1432	then
1433	if [[ "${actionout[$i]}" = tr ]]
1434	then
1435	actionout[$i]=""
1436	elif [[ "${actionout[$i]}" = trpe ]]
1437	then
1438	actionout[$i]=pe
1439	elif [[ "${actionout[$i]}" = tra ]]
1440	then
1441	actionout[$i]=a
1442	fi
1443	(( maxcycle = 0 ))
1444	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1445	eval catalogname=${pathout[$i]}
1446	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1447	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1448	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1449	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1450	then
1451
1452	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1453	if cat /dev/null > $filename
1454	then
1455	rm $filename
1456	else
1457
1458	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1459	if [[ ! -d $catalogname ]]
1460	then
1461	if mkdir -p $catalogname
1462	then
1463	printf "\n\n *** directory:"
1464	printf "\n $catalogname"
1465	printf "\n was created\n"
1466	else
1467	printf "\n\n +++ OUTPUT-file:"
1468	printf "\n $filename"
1469	printf "\n cannot be created, because directory does not exist"
1470	printf "\n and cannot be created either"
1471	printf "\n"
1472	locat=output ; exit
1473	fi 2>/dev/null
1474	else
1475	printf "\n\n +++ OUTPUT-file:"
1476	printf "\n $filename"
1477	printf "\n cannot be created, although directory exists"
1478	printf "\n"
1479	locat=output ; exit
1480	fi
1481	fi 2>/dev/null
1482	else
1483
1484	# ZYKLUSNUMMER FESTSTELLEN
1485	ls -1 -d $filename > filelist 2>/dev/null
1486	ls -1 -d $filename.* >> filelist 2>/dev/null
1487	while read zeile
1488	do
1489	cycle=$(print $zeile \| cut -f2 -d".")
1490	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1491	then
1492	(( icycle = 1 ))
1493	else
1494	(( icycle = $cycle + 1 ))
1495	fi
1496	if (( icycle > maxcycle ))
1497	then
1498	(( maxcycle = icycle ))
1499	fi
1500	done <filelist
1501	rm filelist
1502	fi
1503
1504	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1505	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1506	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1507	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1508	if [[ "${actionout[$i]}" != a ]]
1509	then
1510	if (( maxcycle > 0 ))
1511	then
1512	filename=${filename}.$maxcycle
1513	if cat /dev/null > $filename
1514	then
1515	rm $filename
1516	else
1517	printf "\n +++ OUTPUT-file:"
1518	printf "\n $filename"
1519	printf "\n cannot be created"
1520	locat=output ; exit
1521	fi
1522	fi
1523	else
1524	(( maxcycle = maxcycle - 1 ))
1525	if (( maxcycle > 0 ))
1526	then
1527	filename=${filename}.$maxcycle
1528	fi
1529	fi
1530
1531	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1532	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1533	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1534	pathout[$i]=$filename
1535	if (( maxcycle > 0 ))
1536	then
1537	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1538	else
1539	frelout[$i]=${fname}${endout[$i]}
1540	fi
1541
1542	fi
1543	done
1544
1545
1546	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1547	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1548	then
1549	if [[ "$dvr_inc" = "" ]]
1550	then
1551	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1552	printf "\n This is required for the dvrp_graphics package.\n"
1553	locat=dvr; exit
1554	fi
1555	if [[ "$dvr_lib" = "" ]]
1556	then
1557	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1558	printf "\n This is required for the dvrp_graphics package.\n"
1559	locat=dvr; exit
1560	fi
1561	fi
1562
1563
1564	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1565	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1566	# UEBERSETZT ZU WERDEN)
1567	if [[ "$mainprog" = "" && "$executable" = "" ]]
1568	then
1569	printf "\n +++ neither main program nor executable defined"
1570	locat=source; exit
1571	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1572	then
1573	printf "\n +++ main program as well as executable defined"
1574	locat=source; exit
1575	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1576	then
1577	do_compile=false
1578	fi
1579
1580
1581	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1582	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1583	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1584	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1585	then
1586	rm -rf SOURCES_FOR_RUN_$fname
1587	mkdir SOURCES_FOR_RUN_$fname
1588	fi
1589
1590
1591	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1592	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1593	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1594	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1595	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1596	then
1597
1598	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1599
1600	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1601	then
1602
1603	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1604	source_list=""
1605	cd $source_path
1606
1607
1608	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1609	if [[ ! -d .svn ]]
1610	then
1611	printf "\n\n +++ source directory"
1612	printf "\n \"$source_path\" "
1613	printf "\n is not under control of \"subversion\"."
1614	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1615	fi
1616
1617
1618	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1619	Filenames=""
1620	svn status > tmp_mrun
1621	while read line
1622	do
1623	firstc=`echo $line \| cut -c1`
1624	if [[ $firstc = M \|\| $firstc = "?" ]]
1625	then
1626	Name=`echo "$line" \| cut -c8-`
1627	extension=`echo $Name \| cut -d. -f2`
1628	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1629	then
1630	Filenames="$Filenames "$Name
1631	fi
1632	fi
1633	done < tmp_mrun
1634
1635
1636	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1637	for dateiname in $Filenames
1638	do
1639	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1640	source_list=$source_list"$dateiname "
1641	done
1642
1643	cd - > /dev/null
1644
1645
1646	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1647	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1648	# VORHANDEN
1649	elif [[ "$source_list" != "" && $restart_run != true ]]
1650	then
1651
1652	cd $source_path
1653
1654	for filename in $source_list
1655	do
1656
1657	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1658	if [[ $(print $filename \| grep -c "/") != 0 ]]
1659	then
1660	printf "\n +++ source code file: $filename"
1661	printf "\n must not contain (\"/\") "
1662	locat=source; exit
1663	fi
1664
1665	if [[ ! -f $filename ]]
1666	then
1667	printf "\n +++ source code file: $filename"
1668	printf "\n does not exist"
1669	locat=source; exit
1670	else
1671	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1672	fi
1673
1674	done
1675
1676	cd - > /dev/null
1677
1678	fi
1679
1680
1681	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1682	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1683	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1684	if [[ $restart_run != true ]]
1685	then
1686
1687	if [[ ! -f "$source_path/$mainprog" ]]
1688	then
1689	printf "\n\n +++ main program: $mainprog"
1690	printf "\n does not exist in source directory"
1691	printf "\n \"$source_path\"\n"
1692	locat=source; exit
1693	else
1694	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1695	then
1696	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1697	source_list=${mainprog}" $source_list"
1698	fi
1699	fi
1700	fi
1701
1702
1703	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1704	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1705	if [[ "$restart_run" != true ]]
1706	then
1707	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1708	if [[ ! -f $makefile ]]
1709	then
1710	printf "\n +++ file \"$makefile\" does not exist"
1711	locat=make; exit
1712	else
1713	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1714	fi
1715	fi
1716
1717
1718	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1719	if [[ $restart_run != true && "$add_source_path" != "" ]]
1720	then
1721
1722	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1723	if [[ ! -d $add_source_path ]]
1724	then
1725	printf "\n\n +++ WARNING: additional source code directory"
1726	printf "\n \"$add_source_path\" "
1727	printf "\n does not exist or is not a directory."
1728	printf "\n No source code will be used from this directory!\n"
1729	add_source_path=""
1730	sleep 3
1731	else
1732
1733	cd $add_source_path
1734	found=false
1735
1736	Names=$(ls -1 *.f90 2>&1)
1737	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1738	Names=$(ls -1 *.F90 2>&1)
1739	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1740	Names=$(ls -1 *.F 2>&1)
1741	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1742	Names=$(ls -1 *.f 2>&1)
1743	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1744	Names=$(ls -1 *.c 2>&1)
1745	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1746
1747	cd - > /dev/null
1748	cd SOURCES_FOR_RUN_$fname
1749
1750	# COPY MAKEFILE IF EXISTING
1751	if [[ -f $add_source_path/Makefile ]]
1752	then
1753	printf "\n\n *** user Makefile from directory"
1754	printf "\n \"$add_source_path\" is used \n"
1755	sleep 1
1756	cp $add_source_path/Makefile .
1757	fi
1758
1759	for dateiname in $AddFilenames
1760	do
1761	if [[ -f $dateiname ]]
1762	then
1763	printf "\n +++ source code file \"$dateiname\" found in additional"
1764	printf "\n source code directory \"$add_source_path\" "
1765	printf "\n but was also given with option \"-s\" which means that it should be taken"
1766	printf "\n from directory \"$source_path\"."
1767	locat=source; exit
1768	fi
1769
1770	cp $add_source_path/$dateiname .
1771	source_list="$source_list $dateiname"
1772
1773	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1774	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1775	then
1776	printf "\n\n +++ user file \"$dateiname\" "
1777	printf "\n is not listed in Makefile \n"
1778	locat=source; exit
1779	else
1780
1781	# Default User-Interface von der Liste entfernen, falls Datei
1782	# ein User-Interface enthaelt
1783	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1784	# then
1785	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1786	# then
1787	# rm -rf user_interface.f90
1788	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1789	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1790	# printf "\n since a user-interface is found in file"
1791	# printf "\n \"$add_source_path/$dateiname\" \n"
1792	# sleep 3
1793	# else
1794	if [[ $found = false ]]
1795	then
1796	found=true
1797	printf "\n\n *** following user file(s) added to the"
1798	printf " files to be translated:\n "
1799	fi
1800	printf "$dateiname "
1801	sleep 0.5
1802	fi
1803	done
1804	[[ $found = true ]] && printf "\n"
1805	cd - > /dev/null
1806	fi
1807	fi
1808
1809
1810	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1811	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1812	if [[ $restart_run != true && -n $package_list ]]
1813	then
1814
1815	cd $source_path
1816
1817	for package in $package_list
1818	do
1819
1820	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1821
1822	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1823	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1824	# LIEFERT
1825	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1826
1827
1828	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1829	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1830	for source_list_name in $package_source_list
1831	do
1832	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1833	then
1834
1835	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1836	ending=`echo $source_list_name \| cut -f2 -d.`
1837	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1838	then
1839	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1840	source_list="$source_list $source_list_name"
1841	fi
1842	fi
1843	done
1844	done
1845
1846	cd - > /dev/null
1847	fi
1848
1849
1850	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1851	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1852	# if [[ "$restart_run" != true ]]
1853	# then
1854	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1855	# if [[ ! -f $makefile ]]
1856	# then
1857	# printf "\n +++ file \"$makefile\" does not exist"
1858	# locat=make; exit
1859	# else
1860	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1861	# fi
1862	# fi
1863
1864	fi # do_compile=true
1865
1866
1867	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1868	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1869	if [[ $do_compile = true ]]
1870	then
1871
1872	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1873	# ZUSAMMENSETZEN
1874	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1875	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1876	then
1877	cpp_options="${cpp_options},-D__ibm=__ibm"
1878	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1879	then
1880	cpp_options="$cpp_options -D__nec"
1881	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1882	then
1883	cpp_options="$cpp_options -D__lc"
1884	else
1885	cpp_options="$cpp_options -D__$localhost"
1886	fi
1887
1888	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1889	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1890	then
1891	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1892	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1893	else
1894	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1895	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1896	fi
1897
1898	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1899	if [[ -n $package_list ]]
1900	then
1901	for package in $package_list
1902	do
1903	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1904	then
1905	if [[ $package != "dvrp_graphics+1PE" ]]
1906	then
1907	cpp_options="${cpp_options},-D__$package=__$package"
1908	else
1909	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1910	export use_seperate_pe_for_dvrp_output=true
1911	fi
1912	else
1913	if [[ $package != "dvrp_graphics+1PE" ]]
1914	then
1915	cpp_options="$cpp_options -D__$package"
1916	else
1917	cpp_options="$cpp_options -D__dvrp_graphics"
1918	export use_seperate_pe_for_dvrp_output=true
1919	fi
1920	fi
1921	done
1922	fi
1923
1924	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1925	if [[ -n $cpp_opts ]]
1926	then
1927	for popts in $cpp_opts
1928	do
1929	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1930	then
1931	cpp_options="${cpp_options},-D__$popts=__$popts"
1932	else
1933	cpp_options="$cpp_options -D__$popts"
1934	fi
1935	done
1936	fi
1937
1938	else
1939
1940
1941	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1942	if [[ $do_remote = false ]]
1943	then
1944	if [[ ! -f $executable ]]
1945	then
1946	printf "\n +++ executable file: $executable"
1947	printf "\n does not exist"
1948	locat=executable; exit
1949	fi
1950	fi
1951	fi
1952
1953
1954	# JOBMODUS FESTSTELLEN
1955	if [[ "$ENVIRONMENT" = BATCH ]]
1956	then
1957	jobmo=BATCH
1958	else
1959	jobmo=INTERACTIVE
1960	fi
1961
1962
1963	# no interactive runs on lctit
1964	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1965	then
1966	printf "\n +++ no interactive runs allowed on host \"$host\" "
1967	printf "\n please submit batch job using mrun option \"-b\" \n"
1968	locat=normal; exit
1969	fi
1970
1971
1972	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1973	# DURCH BENUTZER ANDERWEITIG VEREINBART
1974	if [[ "$compiler_name" = "" ]]
1975	then
1976
1977	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1978	locat=compiler_name; exit
1979
1980	fi
1981
1982
1983	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1984	[[ $localhost = necriam ]] && compiler_name=mpif90
1985
1986
1987
1988	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1989	kennung=$RANDOM
1990	if [[ "$tmp_user_catalog" = "" ]]
1991	then
1992	if [[ $localhost = ibmh ]]
1993	then
1994	tmp_user_catalog=$SCRATCH
1995	elif [[ $localhost = nech ]]
1996	then
1997	tmp_user_catalog=$WRKSHR
1998	else
1999	tmp_user_catalog=/tmp
2000	fi
2001	fi
2002	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2003
2004
2005	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2006	# BESTIMMEN
2007	if [[ "$tmp_data_catalog" = "" ]]
2008	then
2009	if [[ $localhost = nech ]]
2010	then
2011	tmp_data_catalog=$WRKSHR/mrun_restart_data
2012	else
2013	tmp_data_catalog=/tmp/mrun_restart_data
2014	fi
2015	fi
2016
2017
2018	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2019	# ERSETZEN
2020	if [[ $do_remote = false && $do_compile = true ]]
2021	then
2022	eval fopts=\"$fopts\"
2023	eval lopts=\"$lopts\"
2024	fi
2025
2026
2027
2028	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2029	fopts="$fopts $netcdf_inc $dvr_inc"
2030	lopts="$lopts $netcdf_lib $dvr_lib"
2031	ROPTS="$ropts"
2032	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2033	then
2034	XOPT="-X $numprocs"
2035	fi
2036
2037
2038
2039	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2040	# GRAMM BENOETIGT
2041	done=false
2042	while [[ $done = false ]]
2043	do
2044	cputime=$cpumax
2045	if (( $cputime == 0 ))
2046	then
2047	if [[ $do_batch = true ]]
2048	then
2049	printf "\n +++ cpu-time is undefined"
2050	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2051	printf "\n >>> "
2052	read cputime 1>/dev/null 2>&1
2053	else
2054	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2055	fi
2056	else
2057	done=true
2058	fi
2059	cpumax=$cputime
2060	done
2061
2062	(( minuten = cputime / 60 ))
2063	(( sekunden = cputime - minuten * 60 ))
2064
2065
2066	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2067	if [[ $do_batch = true ]]
2068	then
2069	done=false
2070	while [[ $done = false ]]
2071	do
2072	if (( memory == 0 ))
2073	then
2074	printf "\n +++ memory demand is undefined"
2075	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2076	printf "\n >>> "
2077	read memory 1>/dev/null 2>&1
2078	else
2079	done=true
2080	fi
2081	done
2082	fi
2083
2084
2085	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2086	if [[ $do_remote = true && -z $remote_username ]]
2087	then
2088	while [[ -z $remote_username ]]
2089	do
2090	printf "\n +++ username on remote host \"$host\" is undefined"
2091	printf "\n >>> Please type username:"
2092	printf "\n >>> "
2093	read remote_username
2094	done
2095	mc="$mc -u$remote_username"
2096	fi
2097
2098
2099	# set module load command and export for subjob
2100	if [[ "$modules" != "" ]]
2101	then
2102	if [[ $host = lctit ]]
2103	then
2104	export module_calls=". $modules"
2105	else
2106	export module_calls="module load ${modules};"
2107	fi
2108	fi
2109
2110	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2111	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2112	then
2113	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2114	then
2115	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2116	fi
2117	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2118	# then
2119	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2120	# echo "*** module_calls = $module_calls"
2121	# fi
2122	fi
2123
2124
2125	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2126	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2127	then
2128	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2129	then
2130	mpilib=mpt
2131	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2132	then
2133	mpilib=mvapich
2134	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2135	then
2136	mpilib=impi
2137	fi
2138	fi
2139
2140
2141
2142	###########################################################################
2143	# HEADER-AUSGABE
2144	###########################################################################
2145
2146
2147	calltime=$(date)
2148	printf "\n"
2149	# [[ $silent = false ]] && clear
2150	printf "#--------------------------------------------------------------# \n"
2151	printf "\| $version$calltime \| \n"
2152	printf "\| \| \n"
2153	spalte1="called on:"; spalte2=$localhost_realname
2154	printf "\| $spalte1$spalte2 \| \n"
2155	if [[ $local_compile = false ]]
2156	then
2157	if [[ $do_remote = true ]]
2158	then
2159	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2160	else
2161	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2162	fi
2163	else
2164	spalte1="compiling test only!"; spalte2=""
2165	fi
2166	printf "\| $spalte1$spalte2 \| \n"
2167	if [[ -n $numprocs ]]
2168	then
2169	spalte1="number of PEs:"; spalte2=$numprocs
2170	printf "\| $spalte1$spalte2 \| \n"
2171	fi
2172	if [[ -n $tasks_per_node ]]
2173	then
2174	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2175	printf "\| $spalte1$spalte2 \| \n"
2176	fi
2177	if [[ $maximum_parallel_io_streams != $numprocs ]]
2178	then
2179	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2180	printf "\| $spalte1$spalte2 \| \n"
2181	fi
2182	if [[ $use_openmp = true ]]
2183	then
2184	spalte1="threads per task:"; spalte2="$threads_per_task"
2185	printf "\| $spalte1$spalte2 \| \n"
2186	fi
2187	printf "\| \| \n"
2188	if [[ $do_compile = true ]]
2189	then
2190	if [[ "$mopts" != "" ]]
2191	then
2192	spalte1="make options:"; spalte2=$mopts
2193	printf "\| $spalte1$spalte2 \| \n"
2194	zeile=$(echo "$mopts" \| cut -c41-)
2195	while [[ "$zeile" != "" ]]
2196	do
2197	spalte1=""
2198	spalte2=$zeile
2199	printf "\| $spalte1$spalte2 \| \n"
2200	zeile=$(echo "$zeile" \| cut -c41-)
2201	done
2202	fi
2203
2204	spalte1="cpp directives:"; spalte2=$cpp_options
2205	printf "\| $spalte1$spalte2 \| \n"
2206	zeile=$(echo "$cpp_options" \| cut -c41-)
2207	while [[ "$zeile" != "" ]]
2208	do
2209	spalte1=""
2210	spalte2=$zeile
2211	printf "\| $spalte1$spalte2 \| \n"
2212	zeile=$(echo "$zeile" \| cut -c41-)
2213	done
2214
2215	spalte1="compiler options:"; spalte2="$fopts"
2216	printf "\| $spalte1$spalte2 \| \n"
2217	zeile=$(echo "$fopts" \| cut -c41-)
2218	while [[ "$zeile" != "" ]]
2219	do
2220	spalte1=""
2221	spalte2=$zeile
2222	printf "\| $spalte1$spalte2 \| \n"
2223	zeile=$(echo "$zeile" \| cut -c41-)
2224	done
2225
2226	spalte1="linker options:"; spalte2=$lopts
2227	printf "\| $spalte1$spalte2 \| \n"
2228	zeile=$(echo "$lopts" \| cut -c41-)
2229	while [[ "$zeile" != "" ]]
2230	do
2231	spalte1=""
2232	spalte2=$zeile
2233	printf "\| $spalte1$spalte2 \| \n"
2234	zeile=$(echo "$zeile" \| cut -c41-)
2235	done
2236
2237	spalte1="modules to be load:"; spalte2=$modules
2238	printf "\| $spalte1$spalte2 \| \n"
2239	zeile=$(echo "$modules" \| cut -c41-)
2240	while [[ "$zeile" != "" ]]
2241	do
2242	spalte1=""
2243	spalte2=$zeile
2244	printf "\| $spalte1$spalte2 \| \n"
2245	zeile=$(echo "$zeile" \| cut -c41-)
2246	done
2247
2248	spalte1="main program":; spalte2=$mainprog
2249	printf "\| $spalte1$spalte2 \| \n"
2250	else
2251	spalte1=executable:; spalte2=$executable
2252	printf "\| $spalte1$spalte2 \| \n"
2253	fi
2254	printf "\| \| \n"
2255	spalte1="base name of files":; spalte2=$fname
2256	printf "\| $spalte1$spalte2 \| \n"
2257	if [[ $fname != $afname ]]
2258	then
2259	spalte1="base name of input files":; spalte2=$afname
2260	printf "\| $spalte1$spalte2 \| \n"
2261	fi
2262	spalte1="INPUT control list":; spalte2=$input_list
2263	printf "\| $spalte1$spalte2 \| \n"
2264	spalte1="OUTPUT control list":; spalte2=$output_list
2265	printf "\| $spalte1$spalte2 \| \n"
2266
2267	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2268	then
2269	spalte1="memory demand / PE":; spalte2="$memory MB"
2270	printf "\| $spalte1$spalte2 \| \n"
2271	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2272	printf "\| $spalte1$spalte2 \| \n"
2273	fi
2274
2275	if [[ $do_compile = true ]]
2276	then
2277	printf "\| \| \n"
2278	printf "\| Files to be compiled: \| \n"
2279	zeile=$source_list
2280	while [[ "$zeile" != "" ]]
2281	do
2282	spalte3=$zeile
2283	printf "\| $spalte3 \| \n"
2284	zeile=$(echo "$zeile" \| cut -c61-)
2285	done
2286	fi
2287	printf "#--------------------------------------------------------------#"
2288
2289
2290
2291	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2292	if [[ $do_trace = true ]]
2293	then
2294	(( i = 0 ))
2295	while (( i < iin ))
2296	do
2297	(( i = i + 1 ))
2298	if (( i == 1 ))
2299	then
2300	printf "\n\n >>> INPUT-file assignments:\n"
2301	fi
2302	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2303	done
2304	(( i = 0 ))
2305	while (( i < iout ))
2306	do
2307	(( i = i + 1 ))
2308	if (( i == 1 ))
2309	then
2310	printf "\n\n >>> OUTPUT-file assignments:\n"
2311	fi
2312	printf "\n ${localout[$i]} : ${pathout[$i]}"
2313	done
2314	(( i = 0 ))
2315	while (( i < iic ))
2316	do
2317	(( i = i + 1 ))
2318	if (( i == 1 ))
2319	then
2320	printf "\n\n >>> INPUT-commands:\n"
2321	fi
2322	printf "\n ${in_command[$i]}"
2323	done
2324	(( i = 0 ))
2325	while (( i < ioc ))
2326	do
2327	(( i = i + 1 ))
2328	if (( i == 1 ))
2329	then
2330	printf "\n\n >>> OUTPUT-commands:\n"
2331	fi
2332	printf "\n ${out_command[$i]}"
2333	done
2334	fi
2335
2336
2337	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2338	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2339	then
2340	antwort=dummy
2341	printf "\n\n"
2342	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2343	do
2344	printf " >>> everything o.k. (y/n) ? "
2345	read antwort
2346	done
2347	if [[ $antwort = n \|\| $antwort = N ]]
2348	then
2349	locat=user_abort; (( iec = 0 )); exit
2350	fi
2351	if [[ $do_batch = true ]]
2352	then
2353	printf " >>> batch-job will be created and submitted"
2354	else
2355	if [[ $local_compile = false ]]
2356	then
2357	printf " >>> MRUN will now continue to execute on this machine"
2358	else
2359	printf " >>> a test compilation will now be carried out on this machine"
2360	fi
2361	fi
2362	fi
2363
2364	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2365
2366	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2367	check_depository="${working_directory}/trunk/UTIL"
2368	check_sources="${working_directory}/tmp_check_namelist_files"
2369	skip_check=false
2370
2371	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2372	if [[ ! -f $check_depository/check_namelist_files.tar \|\| ! -f $PALM_BIN/check_namelist_files.x ]]
2373	then
2374	skip_check=true
2375
2376	fi
2377
2378	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2379	if [[ $check_namelist_files == false \|\| $fromhost != $localhost \|\| $run_coupled_model == true \|\| $restart_run == true ]]
2380	then
2381	skip_check=true
2382	fi
2383	if [[ $skip_check == false ]]
2384	then
2385	if [[ $ocean_file_appendix == true ]]
2386	then
2387	d3par_string="d3o#"
2388	d3fpar_string="d3of"
2389	else
2390	d3par_string="d3#"
2391	d3fpar_string="d3f"
2392	fi
2393
2394	tmp_check=${working_directory}/tmp_check
2395
2396	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2397	line=""
2398	found=false
2399	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2400	while read line1
2401	do
2402	line="$line1"
2403	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2404	then
2405	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2406	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2407	found=true
2408	fi
2409	done < $tmp_check
2410
2411	if [[ $found = false ]]
2412	then
2413	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2414
2415	locat=check_namelist; exit
2416	fi
2417
2418	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2419	# NOT NECESSARILY REQUIRED
2420	line=""
2421	found=false
2422	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2423	while read line1
2424	do
2425	line="$line1"
2426	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2427	then
2428	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2429	found=true
2430	fi
2431	done < $tmp_check
2432
2433	if [[ $found = false ]]
2434	then
2435	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2436	fi
2437
2438	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2439	# NOT NECESSARILY REQUIRED
2440	line=""
2441	found=false
2442	grep "d3f" $config_file \| grep "TOPOGRAPHY_DATA" > $tmp_check
2443	while read line1
2444	do
2445	line="$line1"
2446	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2447	then
2448	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2449	found=true
2450	fi
2451	done < $tmp_check
2452
2453	if [[ $found = false ]]
2454	then
2455	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2456	fi
2457
2458	rm -rf ${working_directory}/tmp_check
2459
2460	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2461	for item in $input_list
2462	do
2463	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2464	then
2465	check_restart=1
2466	else
2467	check_restart=0
2468	fi
2469	done
2470
2471	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2472	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2473	then
2474	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2475	locat=check_namelist; exit
2476	fi
2477
2478	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2479	if [[ $check_restart == 1 ]]
2480	then
2481	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2482	then
2483	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2484	check_restart=0
2485	answer=dummy
2486	printf "\n\n"
2487
2488	if [[ $silent == false ]]
2489	then
2490	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2491	do
2492	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2493	read answer
2494	done
2495	if [[ $answer = a \|\| $answer = A ]]
2496	then
2497	printf "\n +++ Aborting...."
2498	locat=normal; exit
2499	fi
2500	fi
2501	else
2502	check_restart=1
2503	fi
2504	fi
2505
2506	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2507	mkdir $check_sources
2508	cd $check_sources
2509
2510	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2511	if [[ -d $working_directory/USER_CODE/$fname ]]
2512	then
2513	printf "\n\n *** copying files from $check_depository"
2514	cp $check_depository/check_namelist_files.tar ./
2515
2516	printf "\n\n *** untar of makefile and source files in $check_sources"
2517	tar -xf check_namelist_files.tar > /dev/null 2>&1
2518
2519	printf "\n\n *** adding user code."
2520	cp $working_directory/USER_CODE/$fname/* ./
2521	touch check_namelist_files.f90
2522
2523	# GET COMPILER OPTIONS AND PERFORM MAKE
2524	printf "\n\n *** compiling code if necessary...\n"
2525	copts_check="-cpp -D_parallel -D__check"
2526	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2527
2528	# GET MAKE OUTPUT
2529	if [[ $? != 0 ]]
2530	then
2531	printf "\n +++ error during make."
2532	answer=dummy
2533	printf "\n\n"
2534	if [[ $silent == false ]]
2535	then
2536	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2537	do
2538	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2539	read answer
2540	done
2541	if [[ $answer = a \|\| $answer = A ]]
2542	then
2543	printf "\n +++ Aborting..."
2544	rm -rf $check_sources
2545	locat=normal; exit
2546	else
2547	skip_check=true
2548	fi
2549	else
2550	skip_check=true
2551	fi
2552	fi
2553	else
2554	cp $PALM_BIN/check_namelist_files.x ./
2555	fi
2556
2557	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2558	if [[ $check_restart == 1 ]]
2559	then
2560	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2561	fi
2562
2563
2564	if [[ -f $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} && $skip_check == false ]]
2565	then
2566	printf "\n *** adding topography data"
2567	cp $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2568
2569	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2570	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2571	# WHICH REQUIRE SUFFICIENT MEMORY
2572	ulimit -s unlimited
2573	fi
2574
2575	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2576	cat > ENVPAR << %%END%%
2577	&envpar run_identifier = '$fname', host = '$host',
2578	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2579	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2580	maximum_cpu_time_allowed = ${cpumax}.,
2581	revision = '$global_revision',
2582	local_dvrserver_running = $local_dvrserver_running /
2583
2584	%%END%%
2585
2586	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2587	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2588	printf "\n +++ WARNING: check_namelist_files.x not found."
2589	answer=dummy
2590	printf "\n\n"
2591
2592	if [[ $silent == false ]]
2593	then
2594	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2595	do
2596	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2597	read answer
2598	done
2599	if [[ $answer = a \|\| $answer = A ]]
2600	then
2601	printf "\n +++ Aborting..."
2602	rm -rf $check_sources
2603	locat=normal; exit
2604	else
2605	printf "\n *** Skipping parameter file check."
2606
2607	fi
2608	fi
2609
2610	elif [[ $skip_check == false ]]
2611	then
2612	# STARTING THE PARAMETER FILE CHECK
2613	printf "\n\n *** starting parameter file check..."
2614
2615	# CHECKING THE P3D FILE
2616	printf "\n\n (1) checking $fname$p3d_suffix"
2617	echo "$numprocs 0" > VARIN
2618	errors=`./check_namelist_files.x < VARIN 2>&1`
2619
2620	check_error=false
2621	if [[ "$errors" == "" ]]
2622	then
2623	printf " --> o.k."
2624	else
2625	printf " --> failed."
2626	check_error=true
2627	printf "\n\n $errors"
2628	fi
2629
2630	# CHECKING THE PD3F FILE IF NECESSARY
2631	if [[ $check_restart == 1 && $check_error == false ]]
2632	then
2633	printf "\n\n (2) checking $fname$p3df_suffix"
2634
2635	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2636	found=false
2637	cat PARINF\|while read line
2638	do
2639	line=$(echo $line\|sed 's/ //g')
2640	if [[ $line == "&inipar" ]]
2641	then
2642	start_search=true
2643	fi
2644
2645	if [[ $start_search == true ]]
2646	then
2647	if [[ $line == "initializing_actions='read_restart_data'" ]]
2648	then
2649	found=true
2650	break
2651	fi
2652	fi
2653
2654	if [[ $line == "/" ]]
2655	then
2656	start_search=false
2657	fi
2658
2659	done
2660
2661	if [[ $found = false ]]
2662	then
2663	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2664	printf "\n in &inipar list in $fname$p3df_suffix."
2665	rm -rf $check_sources
2666	locat=check_namelist; exit
2667	fi
2668
2669	echo "$numprocs 1" > VARIN
2670	errors=`./check_namelist_files.x < VARIN 2>&1`
2671
2672	if [[ "$errors" == "" ]]
2673	then
2674	printf " --> o.k."
2675	else
2676	printf " --> failed."
2677	check_error=true
2678	printf "\n\n $errors"
2679	fi
2680	fi
2681
2682	# REPORT ERRORS AND CONTINUE/EXIT
2683	if [[ $check_error == true ]]
2684	then
2685	printf "\n +++ errors found in the parameter file!\n"
2686	answer=dummy
2687	printf "\n\n"
2688
2689	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2690	do
2691	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2692	read answer
2693	done
2694
2695	if [[ $answer = a \|\| $answer = A ]]
2696	then
2697	printf "\n +++ Aborting..."
2698	rm -rf $check_sources
2699	locat=normal; exit
2700	fi
2701	else
2702	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2703	fi
2704	rm -rf $check_sources
2705	fi
2706	else
2707	printf "\n\n +++ skipping parameter file check\n"
2708	fi
2709
2710	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2711	rm -rf $check_sources
2712	cd $working_directory
2713
2714	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2715	# CHENDE AKTIONEN DURCHGEFUEHRT
2716	if [[ $do_batch = false ]]
2717	then
2718
2719
2720	# TEMPORAEREN KATALOG ERZEUGEN
2721	mkdir -p $TEMPDIR
2722	chmod go+rx $TEMPDIR
2723	tmpcreate=true
2724
2725	# set striping on lustre file system
2726	# if [[ $localhost = lcsgih ]]
2727	# then
2728	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2729	# lfs getstripe $TEMPDIR
2730	# fi
2731
2732
2733	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2734	# TEMPORAERES VERZEICHNIS KOPIEREN
2735	if [[ $do_compile = true ]]
2736	then
2737
2738	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2739	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2740	if [[ $localhost = nech ]]
2741	then
2742	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2743	if mkdir -p $TEMPDIR_COMPILE
2744	then
2745	printf "\n *** \"$TEMPDIR_COMPILE\" "
2746	printf "\n is generated as temporary directory for cross compiling\n"
2747	else
2748	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2749	printf "\n needed for cross compilation failed"
2750	locat=compile
2751	exit
2752	fi
2753	else
2754	TEMPDIR_COMPILE=$TEMPDIR
2755	fi
2756
2757
2758	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2759	line=""
2760	grep "%depository_path" $config_file > tmp_mrun
2761	while read line
2762	do
2763	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2764	then
2765	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2766	then
2767	global_depository_path=`echo $line \| cut -d" " -s -f2`
2768	fi
2769	fi
2770	done < tmp_mrun
2771
2772	line=""
2773	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2774	while read line
2775	do
2776	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2777	then
2778	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2779	then
2780	local_depository_path=`echo $line \| cut -d" " -s -f2`
2781	fi
2782	fi
2783	done < tmp_mrun
2784
2785	if [[ "$local_depository_path" = "" ]]
2786	then
2787	if [[ "$global_depository_path" != "" ]]
2788	then
2789	local_depository_path=$global_depository_path
2790	else
2791	printf "\n\n +++ no depository path found in configuration file"
2792	printf "\n for local host \"$localhost\" "
2793	printf "\n please set \"\%depository_path\" in configuration file\n"
2794	locat=config_file; exit
2795	fi
2796	fi
2797	eval local_depository_path=$local_depository_path
2798	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2799	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2800
2801
2802	basename=`print $mainprog \| cut -f1 -d"."`
2803	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2804	if [[ ! -f $make_depository ]]
2805	then
2806	printf "\n"
2807	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2808	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2809	else
2810	cp $make_depository $TEMPDIR_COMPILE
2811	cd $TEMPDIR_COMPILE
2812	tar -xf $make_depository > /dev/null 2>&1
2813	cd - > /dev/null
2814	fi
2815
2816	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2817
2818	else
2819
2820	cp $executable ${TEMPDIR}/a.out
2821
2822	fi
2823
2824
2825	# WECHSEL IN TEMPORAEREN KATALOG
2826	cd $TEMPDIR
2827	printf "\n *** changed to temporary directory: $TEMPDIR"
2828
2829
2830	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2831	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2832	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2833	# ERMITTELN
2834	(( i = 0 ))
2835	while (( i < iout ))
2836	do
2837	(( i = i + 1 ))
2838	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2839	then
2840	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2841	else
2842	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2843	fi
2844	done
2845
2846
2847	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2848	if [[ $do_compile = true ]]
2849	then
2850
2851
2852	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2853	printf "\n\n\n *** compilation starts \n$striche\n"
2854	printf " *** compilation with make using following options:\n"
2855	printf " make depository: $make_depository"
2856	if [[ "$mopts" != "" ]]
2857	then
2858	printf " make options: $mopts\n"
2859	fi
2860	printf " compilername: $compiler_name\n"
2861	printf " compiler options: $fopts\n"
2862	printf " preprocessor directives: $cpp_options \n"
2863	printf " linker options: $lopts \n"
2864	if [[ "$modules" != "" ]]
2865	then
2866	printf " modules to be load: $modules \n"
2867	fi
2868	printf " source code files: $source_list \n"
2869
2870	if [[ $localhost = nech ]]
2871	then
2872	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2873	cp $TEMPDIR_COMPILE/a.out .
2874	[[ $? != 0 ]] && compile_error=true
2875	rm -rf $TEMPDIR_COMPILE
2876	elif [[ $localhost = ibmh ]]
2877	then
2878	printf " compiler is called via ssh on \"plogin1\" \n"
2879	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2880	[[ ! -f a.out ]] && compile_error=true
2881	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2882	elif [[ $localhost = lcsgib ]]
2883	then
2884	printf " compiler is called via ssh on \"bicegate0\" \n"
2885	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2886	[[ ! -f a.out ]] && compile_error=true
2887	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2888	elif [[ $localhost = lcsgih ]]
2889	then
2890	printf " compiler is called via ssh on \"hicegate0\" \n"
2891	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2892	[[ ! -f a.out ]] && compile_error=true
2893	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2894	elif [[ $localhost = lcflow ]]
2895	then
2896	printf " compiler is called via ssh on \"flow\" \n"
2897	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2898	[[ ! -f a.out ]] && compile_error=true
2899	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2900	else
2901	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2902	[[ "$module_calls" != "" ]] && eval $module_calls
2903	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2904
2905	fi
2906
2907	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2908	then
2909	printf "\n +++ error occured while compiling or linking"
2910	locat=compile
2911
2912	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2913	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2914	# then
2915	exit
2916	# else
2917	# locat=normal
2918	# fi
2919	else
2920	printf "$striche\n *** compilation finished \n"
2921	fi
2922	fi
2923
2924
2925	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2926	if [[ $local_compile = true ]]
2927	then
2928	cd $HOME
2929	rm -rf $TEMPDIR
2930	locat=local_compile; exit
2931	fi
2932
2933
2934	# BEREITSTELLEN DER INPUT-DATEIEN
2935	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2936	(( i = 0 ))
2937	while (( i < iin ))
2938	do
2939	(( i = i + 1 ))
2940	if (( i == 1 ))
2941	then
2942	printf "\n\n *** providing INPUT-files:\n$striche"
2943	fi
2944
2945
2946	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2947	if [[ "${transin[$i]}" = unavailable ]]
2948	then
2949	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2950	then
2951	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2952	printf "\n is not available!"
2953	else
2954	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2955	printf "\n is not available!"
2956	fi
2957	continue
2958	fi
2959
2960	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2961	files_for_pes=false; datentyp=file
2962	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2963	then
2964	files_for_pes=true; datentyp=directory
2965	actionin[$i]=""
2966	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2967	then
2968	actionin[$i]=""
2969	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2970	then
2971	files_for_pes=true; datentyp=directory
2972	actionin[$i]="ar"
2973	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2974	then
2975	actionin[$i]="ar"
2976	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2977	then
2978	files_for_pes=true; datentyp=directory
2979	actionin[$i]="fl"
2980	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2981	then
2982	actionin[$i]="fl"
2983	fi
2984
2985	if [[ $files_for_pes = true ]]
2986	then
2987	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2988	else
2989	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2990	fi
2991
2992	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2993	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2994	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2995	# SERVER ZU HOLEN
2996	if [[ "${actionin[$i]}" = fl ]]
2997	then
2998	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2999	if [[ $files_for_pes = false ]]
3000	then
3001	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3002	then
3003	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3004	got_tmp[$i]=true
3005	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3006	then
3007	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3008	printf "\n *** trying to use backup copy in \"$WORK\" "
3009	cp $WORK/${frelin[$i]} ${localin[$i]}
3010	else
3011	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3012	printf "\n or \"$tmp_data_catalog\" does not exist!"
3013	printf "\n *** trying to get copy from archive"
3014	actionin[$i]=ar
3015	fi
3016	else
3017	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3018	then
3019	mkdir ${localin[$i]}
3020	cd $tmp_data_catalog/${frelin[$i]}
3021	for file in $(ls *)
3022	do
3023	ln $file $TEMPDIR/${localin[$i]}
3024	done
3025	cd $TEMPDIR
3026	got_tmp[$i]=true
3027	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3028	then
3029	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3030	printf "\n *** trying to use backup copy in \"$WORK\" "
3031	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3032	else
3033	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3034	printf "\n or \"$tmp_data_catalog\" does not exist!"
3035	printf "\n *** trying to get copy from archive"
3036	actionin[$i]=ar
3037	fi
3038	fi
3039	fi
3040
3041
3042	# DATEI LIEGT AUF ARCHIV-SERVER
3043	if [[ "${actionin[$i]}" = ar ]]
3044	then
3045
3046	if [[ $files_for_pes = false ]]
3047	then
3048	printf "\n file will be restored from archive-system ($archive_system)!"
3049	else
3050	printf "\n directory will be restored from archive-system ($archive_system)!"
3051	fi
3052
3053	file_restored=false
3054
3055	if [[ $archive_system = asterix ]]
3056	then
3057	do_stagein=true
3058	(( stagein_anz = 0 ))
3059	while [[ $do_stagein = true ]]
3060	do
3061	if [[ $files_for_pes = false ]]
3062	then
3063	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3064	else
3065	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3066	fi
3067	cat STAGEIN_OUTPUT
3068	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3069	then
3070	file_restored=true
3071	do_stagein=false
3072	else
3073	(( stagein_anz = stagein_anz + 1 ))
3074	if (( stagein_anz == 10 ))
3075	then
3076	printf "\n +++ stagein stoped after 10 tries"
3077	locat=stage
3078	exit
3079	fi
3080	printf "\n +++ restoring from archive failed, trying again:"
3081	sleep 900
3082	fi
3083	done
3084	elif [[ $archive_system = DMF ]]
3085	then
3086	if [[ $files_for_pes = false ]]
3087	then
3088	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3089	locat=DMF
3090	exit
3091	else
3092	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3093	cp -r $ARCHIVE/${frelin[$i]} $PWD
3094	file_restored=true
3095	fi
3096	elif [[ $archive_system = tivoli ]]
3097	then
3098	if [[ $files_for_pes = false ]]
3099	then
3100	if [[ $localhost = lcsgih ]]
3101	then
3102	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3103	else
3104	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3105	fi
3106	else
3107	(( inode = 0 ))
3108	while (( inode < nodes ))
3109	do
3110	if [[ $localhost = lcsgih ]]
3111	then
3112	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3113	else
3114	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3115	fi
3116	(( inode = inode + 1 ))
3117	done
3118	fi
3119	file_restored=true
3120	elif [[ $archive_system = ut ]]
3121	then
3122	if [[ $files_for_pes = false ]]
3123	then
3124	cp $UT/${frelin[$i]} .
3125	else
3126	(( inode = 0 ))
3127	while (( inode < nodes ))
3128	do
3129	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3130	(( inode = inode + 1 ))
3131	done
3132	fi
3133	file_restored=true
3134	else
3135	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3136	locat=rearchive
3137	exit
3138	fi
3139
3140	if [[ $file_restored = true ]]
3141	then
3142
3143	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3144	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3145	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3146	if [[ $files_for_pes = false ]]
3147	then
3148	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3149	else
3150	mkdir $tmp_data_catalog/${frelin[$i]}
3151	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3152	fi
3153	got_tmp[$i]=true
3154
3155	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3156	mv ${frelin[$i]} ${localin[$i]}
3157
3158	fi
3159	fi
3160
3161
3162	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3163	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3164	then
3165
3166	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3167	then
3168
3169	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3170	printf "\n file will be provided for $numprocs processors"
3171	mkdir ${localin[$i]}
3172	ival=$numprocs
3173	(( ii = 0 ))
3174	while (( ii <= ival-1 ))
3175	do
3176	if (( ii < 10 ))
3177	then
3178	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3179	elif (( ii < 100 ))
3180	then
3181	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3182	elif (( ii < 1000 ))
3183	then
3184	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3185	else
3186	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3187	fi
3188	(( ii = ii + 1 ))
3189	done
3190
3191	else
3192
3193	if [[ $files_for_pes = true ]]
3194	then
3195
3196	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3197	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3198	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3199	# PER MOVE UMBENANNT WERDEN
3200	printf "\n providing $numprocs files for the respective processors"
3201	mkdir ${localin[$i]}
3202	if [[ $link_local_input = true ]]
3203	then
3204	printf " using ln -f\n"
3205	cd ${absnamein[$i]}
3206	for file in $(ls *)
3207	do
3208	ln -f $file ${localin[$i]}
3209	done
3210	cd $TEMPDIR
3211	fi
3212	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3213	if [[ ! -f "${localin[$i]}/_0000" ]]
3214	then
3215	if [[ $link_local_input = true ]]
3216	then
3217	printf " ln failed for .../_0000, using cp...\n"
3218	fi
3219	cp -r ${absnamein[$i]}/* ${localin[$i]}
3220	fi
3221
3222	else
3223	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3224	if [[ $link_local_input = true ]]
3225	then
3226	printf " using ln -f\n"
3227	ln -f ${absnamein[$i]} ${localin[$i]}
3228	fi
3229	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3230	if [[ ! -f "${localin[$i]}" ]]
3231	then
3232	if [[ $link_local_input = true ]]
3233	then
3234	printf " ln failed, using cp...\n"
3235	fi
3236	cp ${absnamein[$i]} ${localin[$i]}
3237	fi
3238	fi
3239	fi
3240	fi
3241
3242	done
3243	if (( i != 0 ))
3244	then
3245	printf "\n$striche\n *** all INPUT-files provided \n"
3246	fi
3247
3248
3249	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3250	(( i = 0 ))
3251	while (( i < iic ))
3252	do
3253	(( i = i + 1 ))
3254	if (( i == 1 ))
3255	then
3256	printf "\n\n *** execution of INPUT-commands:\n$striche"
3257	fi
3258	printf "\n >>> ${in_command[$i]}"
3259	eval ${in_command[$i]}
3260	if (( i == iic ))
3261	then
3262	printf "\n$striche\n"
3263	fi
3264	done
3265
3266
3267	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3268	cpurest=${cpumax}.
3269
3270
3271	# START DVR STREAMING SERVER
3272	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3273	then
3274	if [[ "$dvr_server" != "" ]]
3275	then
3276
3277	printf "\n\n *** preparing the dvr streaming server configuration file"
3278
3279	# Check, if a dvr server is already running
3280	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3281	if [[ "$running_dvrserver_id" != "" ]]
3282	then
3283
3284	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3285	printf "\n This server is used instead starting a new one!"
3286	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3287
3288	else
3289
3290	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3291	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3292	then
3293	cp ${PALM_BIN}/.dvrserver.config .
3294
3295	# Entering the BASEDIR, UID and GID into this file
3296	user_id=`id -u`
3297	group_id=`id -g`
3298	# & is needed as seperator, because TEMPDIR contains /
3299	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3300	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3301	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3302	mv .dvrserver.3 .dvrserver.config
3303	rm .dvrserver.1 .dvrserver.2
3304
3305	# Start dvr server in background, get his id and print on terminal
3306	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3307	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3308	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3309	local_dvrserver_running=.TRUE.
3310	else
3311	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3312	printf "\n \"$PALM_BIN\" "
3313	locat=dvr
3314	exit
3315	fi
3316
3317	fi
3318
3319	else
3320	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3321	fi
3322	fi
3323
3324
3325	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3326	# LESEN VON PALM)
3327	cat > ENVPAR << %%END%%
3328	&envpar run_identifier = '$fname', host = '$localhost',
3329	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3330	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3331	maximum_cpu_time_allowed = ${cpumax}.,
3332	revision = '$global_revision',
3333	local_dvrserver_running = $local_dvrserver_running /
3334
3335	%%END%%
3336
3337
3338	# PROGRAMMSTART
3339	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3340	PATH=$PATH:$TEMPDIR
3341
3342	# MPI debug option (argument checking, slows down execution due to increased latency)
3343	if [[ "$mpi_debug" = true ]]
3344	then
3345	export MPI_CHECK_ARGS=1
3346	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3347	fi
3348
3349	if [[ "$totalview" = true ]]
3350	then
3351	printf "\n *** totalview debugger will be used"
3352	tv_opt="-tv"
3353	else
3354	tv_opt=""
3355	fi
3356
3357	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3358	then
3359	if [[ "$ENVIRONMENT" = BATCH ]]
3360	then
3361	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3362	then
3363	printf "\n +++ debug is allowed in interactive mode only"
3364	locat=debug
3365	exit
3366	fi
3367	fi
3368	if [[ $localhost = decalpha ]]
3369	then
3370	dxladebug a.out
3371	elif [[ $localhost = ibmh ]]
3372	then
3373
3374	# SETUP THE IBM MPI ENVIRONMENT
3375	export MP_SHARED_MEMORY=yes
3376	export AIXTHREADS_SCOPE=S
3377	export OMP_NUM_THREADS=$threads_per_task
3378	export AUTHSTATE=files
3379	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3380
3381	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3382	export MP_ADAPTER_USE=shared
3383	export MP_CPU_USE=multiple
3384	export MP_TIMEOUT=1200
3385
3386	unset MP_TASK_AFFINITY
3387
3388	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3389	#(( ii = 1 ))
3390	#while (( ii <= $numprocs ))
3391	#do
3392	# echo $localhost_realname >> hostfile
3393	# (( ii = ii + 1 ))
3394	#done
3395	#export MP_HOSTFILE=hostfile
3396
3397	if [[ "$LOADLBATCH" = yes ]]
3398	then
3399	totalview poe a.out $ROPTS
3400	else
3401	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3402	export TVDSVRLAUNCHCMD=ssh
3403	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3404	fi
3405	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3406	then
3407	# CURRENTLY NO DEBUGGER ON LCSGI
3408	if [[ $run_coupled_model = true ]]
3409	then
3410	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3411	locat=debug
3412	exit
3413	else
3414	echo "no_coupling" > runfile_atmos
3415	fi
3416	(( ii = $numprocs / $threads_per_task ))
3417	export OMP_NUM_THREADS=$threads_per_task
3418	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3419	if [[ $threads_per_task != 1 ]]
3420	then
3421	printf "\n threads per task: $threads_per_task"
3422	fi
3423	printf "\n\n"
3424	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3425	then
3426	# export MPI_LAUNCH_TIMEOUT=360
3427	if [[ "$totalview" = true ]]
3428	then
3429	printf "\n running totalview debugger"
3430	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3431	else
3432	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3433	fi
3434	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3435	then
3436	# ulimit -s 300000 # A too large stack size causes problems
3437	# export MV2_NUM_PORTS=2
3438	# export MV2_CPU_MAPPING=0:1:2:3
3439	if [[ "$totalview" = true ]]
3440	then
3441	printf "\n running totalview debugger"
3442	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3443	else
3444	mpiexec ./a.out $ROPTS < runfile_atmos
3445	fi
3446	fi
3447	else
3448	printf "\n +++ no debug available on \"$localhost\" "
3449	printf "\n or not implemented in mrun so far"
3450	locat=debug
3451	exit
3452	fi
3453
3454	# end debug mode
3455	else
3456
3457	# normal execution
3458	if [[ -n $numprocs ]]
3459	then
3460	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3461	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3462	then
3463	# SETUP THE IBM MPI ENVIRONMENT
3464	if [[ $host != ibmh && $host != ibmkisti ]]
3465	then
3466	export MP_SHARED_MEMORY=yes
3467	export AIXTHREAD_SCOPE=S
3468	export OMP_NUM_THREADS=$threads_per_task
3469	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3470	export AUTHSTATE=files
3471	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3472	# export MP_PRINTENV=yes
3473
3474	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3475	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3476	export MP_WAIT_MODE=poll
3477	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3478	fi
3479
3480	if [[ $host = ibmkisti ]]
3481	then
3482	export LANG=en_US
3483	export MP_SHARED_MEMORY=yes
3484	if [[ $threads_per_task = 1 ]]
3485	then
3486	export MP_SINGLE_THREAD=yes
3487	export MEMORY_AFFINITY=MCM
3488	else
3489	export OMP_NUM_THREADS=$threads_per_task
3490	fi
3491	fi
3492
3493	if [[ "$LOADLBATCH" = yes ]]
3494	then
3495	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3496	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3497	then
3498	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3499	else
3500	if [[ $run_coupled_model = false ]]
3501	then
3502	if [[ "$ocean_file_appendix" = true ]]
3503	then
3504	echo "precursor_ocean" > runfile_atmos
3505	else
3506	echo "precursor_atmos" > runfile_atmos
3507	fi
3508	else
3509	(( iia = $numprocs_atmos / $threads_per_task ))
3510	(( iio = $numprocs_ocean / $threads_per_task ))
3511	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3512	printf "\n using $coupled_mode coupling"
3513	printf "\n\n"
3514	echo "coupled_run $iia $iio" > runfile_atmos
3515	fi
3516	poe ./a.out $ROPTS < runfile_atmos
3517	fi
3518	else
3519	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3520	then
3521	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3522	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3523	then
3524	if [[ -f $hostfile ]]
3525	then
3526	cp $hostfile hostfile
3527	else
3528	(( ii = 1 ))
3529	while (( ii <= $numprocs ))
3530	do
3531	echo $localhost_realname >> hostfile
3532	(( ii = ii + 1 ))
3533	done
3534	fi
3535	export MP_HOSTFILE=hostfile
3536	if [[ $run_coupled_model = false ]]
3537	then
3538	if [[ "$ocean_file_appendix" = true ]]
3539	then
3540	echo "precursor_ocean" > runfile_atmos
3541	else
3542	echo "precursor_atmos" > runfile_atmos
3543	fi
3544	else
3545	(( iia = $numprocs_atmos / $threads_per_task ))
3546	(( iio = $numprocs_ocean / $threads_per_task ))
3547	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3548	printf "\n using $coupled_mode coupling"
3549	printf "\n\n"
3550	echo "coupled_run $iia $iio" > runfile_atmos
3551	fi
3552	if [[ $localhost = ibmy ]]
3553	then
3554	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3555	else
3556	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3557	fi
3558
3559	else
3560	if [[ "$host_file" = "" ]]
3561	then
3562	printf "\n +++ no hostfile given in configuration file"
3563	locat=config_file
3564	exit
3565	else
3566	eval host_file=$host_file
3567	fi
3568	export MP_HOSTFILE=$host_file
3569	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3570	fi
3571	fi
3572	elif [[ $host = nech \|\| $host = necriam ]]
3573	then
3574	(( ii = nodes ))
3575	if [[ $ii = 1 ]]
3576	then
3577	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3578	export MPIPROGINF=YES
3579	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3580	echo "*** execution on single node with mpirun"
3581	mpirun -np $numprocs ./a.out $ROPTS
3582	else
3583	(( i = 0 ))
3584	while (( i < ii ))
3585	do
3586	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3587	(( i = i + 1 ))
3588	done
3589
3590	echo "#!/bin/sh" > mpi_exec_shell
3591	echo " " >> mpi_exec_shell
3592	echo "set -u" >> mpi_exec_shell
3593	echo "F_ERRCNT=0" >> mpi_exec_shell
3594	echo "MPIPROGINV=YES" >> mpi_exec_shell
3595	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3596	echo "cpurest=$cpurest" >> mpi_exec_shell
3597	echo "fname=$fname" >> mpi_exec_shell
3598	echo "localhost=$localhost" >> mpi_exec_shell
3599	echo "return_addres=$return_addres" >> mpi_exec_shell
3600	echo "return_username=$return_username" >> mpi_exec_shell
3601	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3602	echo "write_binary=$write_binary" >> mpi_exec_shell
3603	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3604	echo " " >> mpi_exec_shell
3605	echo "export F_ERRCNT" >> mpi_exec_shell
3606	echo "export MPIPROGINV" >> mpi_exec_shell
3607	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3608	echo "export cpurest" >> mpi_exec_shell
3609	echo "export fname" >> mpi_exec_shell
3610	echo "export localhost" >> mpi_exec_shell
3611	echo "export return_addres" >> mpi_exec_shell
3612	echo "export return_username" >> mpi_exec_shell
3613	echo "export tasks_per_node" >> mpi_exec_shell
3614	echo "export write_binary" >> mpi_exec_shell
3615	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3616	echo " " >> mpi_exec_shell
3617	echo "exec ./a.out" >> mpi_exec_shell
3618
3619	chmod u+x mpi_exec_shell
3620	export MPIPROGINF=YES
3621	mpirun -f multinode_config &
3622	wait
3623
3624	fi
3625	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3626	then
3627
3628	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3629	# DOES NOT EXIST
3630	if [[ $host != lcsgih && $host != lcsgib ]]
3631	then
3632	if [[ -f $hostfile ]]
3633	then
3634	cp $hostfile hostfile
3635	(( ii = $numprocs / $threads_per_task ))
3636	else
3637	(( ii = 1 ))
3638	while (( ii <= $numprocs / $threads_per_task ))
3639	do
3640	echo $localhost_realname >> hostfile
3641	(( ii = ii + 1 ))
3642	done
3643	fi
3644	eval zeile=\"`head -n $ii hostfile`\"
3645	printf "\n *** running on: $zeile"
3646	fi
3647
3648	(( ii = $numprocs / $threads_per_task ))
3649	export OMP_NUM_THREADS=$threads_per_task
3650	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3651	if [[ $threads_per_task != 1 ]]
3652	then
3653	# increase stack size to unlimited, because large runs
3654	# may abort otherwise
3655	ulimit -Ss unlimited
3656	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3657	fi
3658	if [[ $run_coupled_model = false ]]
3659	then
3660	if [[ "$ocean_file_appendix" = true ]]
3661	then
3662	echo "precursor_ocean" > runfile_atmos
3663	else
3664	echo "precursor_atmos" > runfile_atmos
3665	fi
3666	printf "\n\n"
3667	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3668	then
3669	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3670	then
3671	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3672	# export MPI_DSM_DISTRIBUTE=1
3673	# MPI_DSM_CPULIST: pin MPI processes to cores
3674	if [[ $use_openmp = false ]]
3675	then
3676	if [[ "$sgi_feature" = ice2 ]]
3677	then
3678	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3679	else
3680	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3681	fi
3682	else
3683	unset MPI_DSM_CPULIST
3684	fi
3685	# MPI_IB_RAILS: use both IB rails on ICE2
3686	export MPI_BUFS_PER_HOST=512
3687	export MPI_IB_RAILS=2
3688	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3689	export MPI_CONNECTIONS_THRESHOLD=8192
3690	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3691	export MPI_TYPE_DEPTH=20
3692	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3693	export MPI_GROUP_MAX=64
3694	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3695	if [[ $use_openmp = true ]]
3696	then
3697	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3698	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3699	else
3700	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3701	fi
3702
3703	# next is test for openmp usage
3704	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3705	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3706	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3707	then
3708	export MV2_NUM_PORTS=2
3709	# The default setting of MV2_CPU_MAPPING gives best results
3710	# export MV2_ENABLE_AFFINITY=1
3711	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3712	# if [[ "$sgi_feature" = ice2 ]]
3713	# then
3714	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3715	# else
3716	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3717	# fi
3718	if [[ $use_openmp = true ]]
3719	then
3720	unset MV2_CPU_MAPPING
3721	export MV2_ENABLE_AFFINITY=0
3722	fi
3723	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3724	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3725	if [[ $use_openmp = true ]]
3726	then
3727	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3728	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3729	else
3730	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3731	fi
3732	elif [[ "$mpilib" = impi ]]
3733	then
3734	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3735	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3736	fi
3737	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3738	then
3739	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3740	elif [[ $host = lcflow ]]
3741	then
3742	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3743	else
3744	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3745	fi
3746	else
3747
3748	# currently there is no full MPI-2 support on ICE and XT4
3749	(( iia = $numprocs_atmos / $threads_per_task ))
3750	(( iio = $numprocs_ocean / $threads_per_task ))
3751	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3752	printf "\n using $coupled_mode coupling"
3753	printf "\n\n"
3754
3755	if [[ $coupled_mode = "mpi2" ]]
3756	then
3757	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3758	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3759	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3760	then
3761
3762	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3763	then
3764	# export MPI_LAUNCH_TIMEOUT=360
3765	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3766	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3767	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3768	then
3769	# ulimit -s 300000 # A too large stack size causes problems
3770	# export MV2_NUM_PORTS=2
3771	# export MV2_CPU_MAPPING=0:1:2:3
3772	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3773	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3774	fi
3775
3776	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3777	then
3778
3779	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3780	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3781
3782	else
3783	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3784	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3785	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3786	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3787	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3788	fi
3789	wait
3790
3791	else
3792
3793	echo "coupled_run $iia $iio" > runfile_atmos
3794	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3795	then
3796
3797	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3798	then
3799	# export MPI_LAUNCH_TIMEOUT=360
3800	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3801	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3802	then
3803	# ulimit -s 300000 # A too large stack size causes problems
3804	# export MV2_NUM_PORTS=2
3805	# export MV2_CPU_MAPPING=0:1:2:3
3806	mpiexec ./a.out $ROPTS < runfile_atmos
3807	fi
3808
3809	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3810	then
3811
3812	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3813
3814	elif [[ $host = lck \|\| $host = lckordi ]]
3815	then
3816	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3817	fi
3818	wait
3819	fi
3820
3821	fi
3822	elif [[ $host = decalpha ]]
3823	then
3824	dmpirun -np $numprocs a.out $ROPTS
3825	elif [[ $host = lckyoto ]]
3826	then
3827	set -xv
3828	export P4_RSHCOMMAND=plesh
3829	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3830	if [[ "$ENVIRONMENT" = BATCH ]]
3831	then
3832	if [[ "$cond2" = fujitsu ]]
3833	then
3834	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3835	elif [[ "cond2" = pgi ]]
3836	then
3837	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3838	else
3839	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3840	fi
3841	else
3842	if [[ "$cond2" = "" ]]
3843	then
3844	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3845	else
3846	mpirun -np $numprocs ./a.out $ROPTS
3847	fi
3848	fi
3849	set +xv
3850	elif [[ $host = lctit ]]
3851	then
3852	export OMP_NUM_THREADS=$threads_per_task
3853	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3854	if [[ "$threads_per_task" != 1 ]]
3855	then
3856	export MV2_ENABLE_AFFINITY=0
3857	fi
3858	echo "----- PBS_NODEFILE content:"
3859	cat $PBS_NODEFILE
3860	echo "-----"
3861	(( ii = $numprocs / $threads_per_task ))
3862	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3863	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3864	else
3865	mpprun -n $numprocs a.out $ROPTS
3866	fi
3867	[[ $? != 0 ]] && execution_error=true
3868
3869
3870	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3871	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3872	then
3873	apprentice
3874	fi
3875	else
3876	a.out $ROPTS
3877	fi
3878	fi
3879	if [[ $? != 0 \|\| $execution_error = true ]]
3880	then
3881
3882	# ABBRUCH BEI LAUFZEITFEHLER
3883	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3884	printf "\n +++ runtime error occured"
3885	locat=execution
3886	exit
3887	else
3888	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3889	printf "\n$striche\n *** execution finished \n"
3890
3891	# Stop the dvr streaming server and process the dvr output in order
3892	# to create dvrs- and html-files containing all streams
3893	if [[ "$dvrserver_id" != "" ]]
3894	then
3895	kill $dvrserver_id
3896	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3897
3898	# If there is a directory, data have been output by the
3899	# streaming server. Otherwise, user has chosen dvrp_output=local
3900	if [[ -d DATA_DVR ]]
3901	then
3902
3903	# Add the current dvr configuration file to the dvr output
3904	# directory
3905	cp .dvrserver.config DATA_DVR
3906
3907	# Process the dvr output (option -s for also generating
3908	# sequence mode data)
3909	process_dvr_output -d DATA_DVR -f $fname -s
3910
3911	else
3912
3913	# Process the local output
3914	process_dvr_output -l -d DATA_DVR -f $fname
3915
3916	fi
3917
3918	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3919	then
3920
3921	# Process dvr output generated in local mode (dvrp_output=local)
3922	process_dvr_output -l -d DATA_DVR -f $fname
3923
3924	fi
3925	fi
3926
3927
3928
3929	# Call of combine_plot_fields in order to merge single files written
3930	# by each PE into one file.
3931	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3932	then
3933	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3934	printf "\n 2d- and/or 3d-data may be incomplete!"
3935	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3936	else
3937	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3938	combine_plot_fields${block}.x
3939	fi
3940
3941
3942
3943	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3944	(( i = 0 ))
3945	while (( i < ioc ))
3946	do
3947	(( i = i + 1 ))
3948	if (( i == 1 ))
3949	then
3950	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3951	fi
3952	printf "\n >>> ${out_command[$i]}"
3953	eval ${out_command[$i]}
3954	if (( i == ioc ))
3955	then
3956	printf "\n$striche\n"
3957	fi
3958	done
3959
3960
3961	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3962	if [[ $do_trace = true ]]
3963	then
3964	printf "\n\n"
3965	ls -al
3966	fi
3967
3968
3969
3970	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3971	(( i = 0 ))
3972	while (( i < iout ))
3973	do
3974	(( i = i + 1 ))
3975	if (( i == 1 ))
3976	then
3977	printf "\n\n *** saving OUTPUT-files:\n$striche"
3978	fi
3979
3980	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3981	files_for_pes=false; filetyp=file
3982	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3983	then
3984	files_for_pes=true; filetyp=directory
3985	actionout[$i]=""
3986	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3987	then
3988	actionout[$i]=""
3989	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3990	then
3991	files_for_pes=true; filetyp=directory
3992	actionout[$i]="ar"
3993	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3994	then
3995	actionout[$i]="ar"
3996	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3997	then
3998	files_for_pes=true; filetyp=directory
3999	actionout[$i]="fl"
4000	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4001	then
4002	actionout[$i]="fl"
4003	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4004	then
4005	files_for_pes=true; filetyp=directory
4006	actionout[$i]="tr"
4007	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4008	then
4009	actionout[$i]="tr"
4010	fi
4011
4012	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4013	then
4014	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4015	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4016	then
4017	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4018	else
4019
4020
4021	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4022	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4023	# REMOTE-RECHNUNGEN
4024	if [[ "${actionout[$i]}" = tr ]]
4025	then
4026	if [[ $localhost != $fromhost ]]
4027	then
4028	if [[ $files_for_pes = false ]]
4029	then
4030	cps=""
4031	cst=""
4032	else
4033	cps=-c
4034	cst="/"
4035	fi
4036	if [[ $localhost = nech ]]
4037	then
4038
4039	# TRANSFER IN EIGENSTAENDIGEM JOB
4040	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4041	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4042	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4043	if [[ $files_for_pes = false ]]
4044	then
4045	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4046	else
4047	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4048	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4049	fi
4050
4051	echo "set -x" > transfer_${localout[$i]}
4052	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4053
4054	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4055	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4056	printf "\n or higher cycle\n"
4057	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4058
4059	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4060
4061	if [[ $localhost = nech ]]
4062	then
4063	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4064	else
4065	if [[ "$LOGNAME" = b323013 ]]
4066	then
4067	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4068	else
4069	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4070	fi
4071	fi
4072
4073	else
4074
4075	# TRANSFER INNERHALB DIESES JOBS
4076	transfer_failed=false
4077	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4078	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4079	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4080	[[ $? != 0 ]] && transfer_failed=true
4081
4082	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4083	# LOKALER MASCHINE ANLEGEN
4084	if [[ $transfer_failed = true ]]
4085	then
4086	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4087	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4088
4089	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4090	# ANLEGEN.
4091	eval local_catalog=${pathout[$i]}
4092	if [[ ! -d $local_catalog ]]
4093	then
4094	printf " *** local directory does not exist. Trying to create:\n"
4095	printf " $local_catalog \n"
4096	mkdir -p $local_catalog
4097	fi
4098	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4099	transfer_problems=true
4100	fi
4101	fi
4102	else
4103
4104	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4105	actionout[$i]=""
4106	fi
4107	fi
4108
4109
4110	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4111	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4112	# REMOTE-RECHNUNGEN
4113	if [[ "${actionout[$i]}" = tra ]]
4114	then
4115	if [[ $localhost != $fromhost ]]
4116	then
4117	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4118	then
4119
4120	# TRANSFER IN EIGENSTAENDIGEM JOB
4121	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4122	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4123	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4124	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4125
4126	echo "set -x" > transfer_${localout[$i]}
4127	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4128
4129	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4130	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4131	printf "\n or higher cycle\n"
4132	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4133
4134	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4135
4136	if [[ $localhost = nech ]]
4137	then
4138	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4139	else
4140	if [[ $LOGNAME = b323013 ]]
4141	then
4142	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4143	else
4144	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4145	fi
4146	fi
4147
4148	else
4149
4150	# TRANSFER INNERHALB DIESES JOBS
4151	transfer_failed=false
4152	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4153	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4154	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4155	[[ $? != 0 ]] && transfer_failed=true
4156
4157	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4158	# LOKALER MASCHINE ANLEGEN
4159	if [[ $transfer_failed = true ]]
4160	then
4161	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4162	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4163
4164	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4165	# ANLEGEN
4166	eval local_catalog=${pathout[$i]}
4167	if [[ ! -d $local_catalog ]]
4168	then
4169	printf " *** local directory does not exist. Trying to create:\n"
4170	printf " $local_catalog \n"
4171	mkdir -p $local_catalog
4172	fi
4173
4174	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4175	transfer_problems=true
4176	fi
4177	fi
4178	else
4179
4180	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4181	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4182	actionout[$i]=a
4183	fi
4184	fi
4185
4186
4187	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4188	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4189	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4190	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4191	if [[ "${actionout[$i]}" = fl ]]
4192	then
4193	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4194	chmod g+rx $tmp_data_catalog
4195	if [[ $files_for_pes = false ]]
4196	then
4197	printf "\n >>> OUTPUT: ${localout[$i]} to"
4198	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4199	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4200	else
4201	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4202	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4203	mkdir $tmp_data_catalog/${frelout[$i]}
4204	cd ${localout[$i]}
4205	for file in $(ls *)
4206	do
4207	ln -f $file $tmp_data_catalog/${frelout[$i]}
4208	done
4209	cd $TEMPDIR
4210	fi
4211
4212
4213	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4214	if [[ $store_on_archive_system = true ]]
4215	then
4216
4217	if [[ $archive_system = asterix ]]
4218	then
4219	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4220	if [[ $files_for_pes = false ]]
4221	then
4222	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4223	else
4224	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4225	fi
4226	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4227	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4228	echo "then" >> archive_${frelout[$i]}
4229	echo " do_stageout=false" >> archive_${frelout[$i]}
4230	echo "else" >> archive_${frelout[$i]}
4231	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4232	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4233	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4234	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4235	if [[ $files_for_pes = false ]]
4236	then
4237	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4238	else
4239	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4240	fi
4241	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4242	echo "fi" >> archive_${frelout[$i]}
4243	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4244	elif [[ $archive_system = DMF ]]
4245	then
4246	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4247	if [[ $files_for_pes = false ]]
4248	then
4249	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4250	locat=DMF
4251	exit
4252	else
4253	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4254	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4255	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4256	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4257	fi
4258	elif [[ $archive_system = tivoli ]]
4259	then
4260	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4261	if [[ $files_for_pes = false ]]
4262	then
4263	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4264	echo "set -x" >> archive_${frelout[$i]}
4265	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4266	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4267	else
4268
4269	echo "set -x" >> archive_${frelout[$i]}
4270	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4271	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4272	cd $tmp_data_catalog
4273	all_files=`ls -1 ${frelout[$i]}/*`
4274	cd - > /dev/null
4275	(( inode = 0 ))
4276	(( tp1 = tasks_per_node + 1 ))
4277	while (( inode < nodes ))
4278	do
4279	# echo "*** all_files = \"$all_files\" "
4280	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4281	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4282	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4283	# echo "*** files = \"$files\" "
4284	# echo "*** all_files = \"$all_files\" "
4285	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4286	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4287	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4288	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4289	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4290	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4291	(( inode = inode + 1 ))
4292	done
4293	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4294	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4295	fi
4296	elif [[ $archive_system = ut ]]
4297	then
4298	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4299	if [[ $files_for_pes = false ]]
4300	then
4301	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4302	echo "set -x" >> archive_${frelout[$i]}
4303	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4304	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4305	else
4306
4307	echo "set -x" >> archive_${frelout[$i]}
4308	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4309	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4310	cd $tmp_data_catalog
4311	all_files=`ls -1 ${frelout[$i]}/*`
4312	cd - > /dev/null
4313	(( inode = 0 ))
4314	(( tp1 = tasks_per_node + 1 ))
4315	while (( inode < nodes ))
4316	do
4317	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4318	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4319	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4320	(( inode = inode + 1 ))
4321	done
4322	fi
4323	elif [[ $archive_system = none ]]
4324	then
4325	printf " +++ archiving on $localhost not available!\n"
4326	fi
4327
4328	if [[ $archive_system != none ]]
4329	then
4330	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4331	then
4332	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4333	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4334	elif [[ $localhost = nech ]]
4335	then
4336	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4337	fi
4338	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4339	fi
4340	else
4341	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4342	fi
4343
4344
4345	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4346	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4347	if [[ $files_for_pes = false ]]
4348	then
4349	cat /dev/null > ${pathout[$i]}
4350	else
4351	mkdir -p ${pathout[$i]}
4352	fi
4353
4354	fi
4355
4356
4357	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4358	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4359	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4360	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4361	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4362	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4363	if [[ "${actionout[$i]}" = ar ]]
4364	then
4365	if [[ $files_for_pes = false ]]
4366	then
4367	printf "\n >>> OUTPUT: ${localout[$i]} to"
4368	printf "\n ${pathout[$i]}"
4369	printf "\n File will be copied to archive-system ($archive_system) !\n"
4370	else
4371	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4372	printf "\n ${pathout[$i]}"
4373	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4374	fi
4375	mv ${localout[$i]} ${frelout[$i]}
4376
4377	file_saved=false
4378
4379	if [[ $archive_system = asterix ]]
4380	then
4381	do_stageout=true
4382	(( stageout_anz = 0 ))
4383	while [[ $do_stageout = true ]]
4384	do
4385	if [[ $files_for_pes = false ]]
4386	then
4387	stageout ${frelout[$i]} > STAGE_OUTPUT
4388	else
4389	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4390	fi
4391	cat STAGE_OUTPUT
4392	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4393	then
4394	file_saved=true
4395	do_stageout=false
4396	else
4397	if [[ $files_for_pes = false ]]
4398	then
4399	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4400	else
4401	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4402	fi
4403	(( stageout_anz = stageout_anz + 1 ))
4404	if (( stageout_anz == 10 ))
4405	then
4406	printf "\n +++ stoped after 10 unsuccessful tries!"
4407	archive_save=false
4408	do_stageout=false
4409	else
4410	printf "\n *** new try to store on archive after 15 min:"
4411	sleep 900
4412	fi
4413	fi
4414	done
4415	elif [[ $archive_system = DMF ]]
4416	then
4417	if [[ $files_for_pes = false ]]
4418	then
4419	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4420	locat=DMF
4421	exit
4422	else
4423	rm -rf $ARCHIVE/${frelout[$i]}
4424	cp -r ${frelout[$i]} $ARCHIVE
4425	fi
4426	file_saved=true
4427	elif [[ $archive_system = tivoli ]]
4428	then
4429	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4430	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4431	# GELEGT WERDEN
4432	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4433	chmod g+rx $tmp_data_catalog
4434	if [[ $files_for_pes = false ]]
4435	then
4436	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4437	else
4438	mkdir $tmp_data_catalog/${frelout[$i]}
4439	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4440	fi
4441
4442	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4443	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4444	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4445	if [[ $files_for_pes = false ]]
4446	then
4447	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4448	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4449	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4450	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4451	else
4452	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4453	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4454	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4455	fi
4456
4457	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4458	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4459	file_saved=true
4460
4461	elif [[ $archive_system = ut ]]
4462	then
4463	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4464	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4465	# GELEGT WERDEN
4466	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4467	chmod g+rx $tmp_data_catalog
4468	if [[ $files_for_pes = false ]]
4469	then
4470	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4471	else
4472	mkdir $tmp_data_catalog/${frelout[$i]}
4473	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4474	fi
4475
4476	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4477	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4478	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4479	if [[ $files_for_pes = false ]]
4480	then
4481	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4482	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4483	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4484	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4485	else
4486	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4487	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4488	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4489	fi
4490
4491	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4492	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4493	file_saved=true
4494
4495	else
4496	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4497	archive_save=false
4498	fi
4499	if [[ $file_saved = true ]]
4500	then
4501	if [[ $files_for_pes = false ]]
4502	then
4503	cat /dev/null > ${pathout[$i]}
4504	else
4505	mkdir -p ${pathout[$i]}
4506	fi
4507	fi
4508	fi
4509
4510	# APPEND AUF LOKALER MASCHINE
4511	if [[ "${actionout[$i]}" = "a" ]]
4512	then
4513	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4514	then
4515	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4516	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4517	else
4518	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4519	cat ${localout[$i]} >> ${pathout[$i]}
4520	fi
4521	fi
4522
4523	# KOPIEREN AUF LOKALER MASCHINE
4524	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4525	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4526	then
4527
4528	# KOPIEREN AUF EINPROZESSORMASCHINE
4529	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4530	then
4531	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4532	if [[ $link_local_output = true ]]
4533	then
4534	printf " using ln -f\n"
4535	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4536	fi
4537	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4538	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4539	then
4540	if [[ $link_local_output = true ]]
4541	then
4542	printf " ln failed, using cp...\n"
4543	fi
4544	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4545	fi
4546	else
4547	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4548	if [[ $link_local_output = true ]]
4549	then
4550	printf " using ln -f\n"
4551	ln -f ${localout[$i]} ${pathout[$i]}
4552	fi
4553	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4554	if [[ ! -f "${pathout[$i]}" ]]
4555	then
4556	if [[ $link_local_output = true ]]
4557	then
4558	printf " ln failed, using cp...\n"
4559	fi
4560	cp ${localout[$i]} ${pathout[$i]}
4561	fi
4562	fi
4563
4564	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4565	then
4566
4567	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4568	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4569	# WIRD DANN KOPIERT
4570	# PER MOVE UMBENANNT WERDEN
4571	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4572	if [[ $link_local_output = true ]]
4573	then
4574	printf " using ln -f\n"
4575	mkdir ${pathout[$i]}
4576	cd ${localout[$i]}
4577	for file in $(ls *)
4578	do
4579	ln -f $file ${pathout[$i]}
4580	done
4581	cd $TEMPDIR
4582	fi
4583	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4584	if [[ ! -f "${pathout[$i]}/_0000" ]]
4585	then
4586	if [[ $link_local_output = true ]]
4587	then
4588	printf " ln failed for .../_0000, using cp...\n"
4589	fi
4590	cp -r ${localout[$i]} ${pathout[$i]}
4591	fi
4592
4593	fi
4594	fi
4595	done
4596	if (( i != 0 ))
4597	then
4598	if [[ $transfer_problems = true ]]
4599	then
4600	printf "\n$striche\n *** OUTPUT-files saved"
4601	printf "\n +++ WARNING: some data transfers failed! \n"
4602	else
4603	printf "\n$striche\n *** all OUTPUT-files saved \n"
4604	fi
4605	fi
4606
4607
4608	# EVENTUELL FOLGEJOB STARTEN
4609	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4610	if [[ -f CONTINUE_RUN ]]
4611	then
4612
4613	if [[ $archive_save = true ]]
4614	then
4615
4616	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4617	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4618	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4619	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4620	# HANDEN
4621	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4622	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4623	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4624	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4625	then
4626	mc=`echo $mc \| sed 's/#/f/g'`
4627	fi
4628
4629
4630	# JOB STARTEN
4631	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4632	echo " $mc"
4633	printf "\n$striche\n"
4634	if [[ $localhost != $fromhost ]]
4635	then
4636
4637	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4638	then
4639	echo "*** ssh will be used to initiate restart-runs!"
4640	echo " return_addres=\"$return_addres\" "
4641	echo " return_username=\"$return_username\" "
4642	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4643	then
4644	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4645	else
4646	if [[ $localhost = ibmkisti ]]
4647	then
4648	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4649	else
4650	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4651	fi
4652	fi
4653	else
4654	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4655	locat=restart; exit
4656	fi
4657
4658	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4659	# DER AKTUELLE JOB ENDET
4660	if [[ $queue = special1q ]]
4661	then
4662	sleep 120
4663	else
4664	sleep 30
4665	fi
4666
4667	else
4668
4669	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4670	# RUFEN WERDEN, AUSSER AUF lcfimm
4671	cd $LOCAL_PWD
4672	if [[ $localhost = lcfimm ]]
4673	then
4674	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4675	else
4676	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4677	fi
4678	cd - > /dev/null
4679	fi
4680	printf "\n$striche\n *** restart-run initiated \n"
4681
4682
4683	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4684	# GEHOLT WORDEN SIND, LOESCHEN
4685	(( i = 0 ))
4686	while (( i < iin ))
4687	do
4688	(( i = i + 1 ))
4689	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4690	then
4691	rm -r $tmp_data_catalog/${frelin[$i]}
4692	fi
4693	done
4694
4695	else
4696
4697	printf "\n +++ no restart-run possible, since errors occured"
4698	printf "\n during the archive process"
4699	fi
4700
4701	fi
4702
4703
4704
4705	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4706	if [[ "$email_notification" != "none" ]]
4707	then
4708
4709	if [[ $localhost != $fromhost ]]
4710	then
4711	if [[ -f CONTINUE_RUN ]]
4712	then
4713	echo "PALM restart run necessary" > email_text
4714	echo "description header of actual run:" >> email_text
4715	cat CONTINUE_RUN >> email_text
4716	echo "mrun-command to restart:" >> email_text
4717	echo "$mc" >> email_text
4718	else
4719	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4720	fi
4721	mail $email_notification < email_text
4722	printf "\n *** email notification sent to \"$email_notification\" "
4723	fi
4724	fi
4725
4726
4727
4728	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4729	cd $HOME
4730	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4731
4732	else
4733
4734
4735	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4736	# CHENDE AKTIONEN DURCHGEFUEHRT
4737
4738	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4739	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4740	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4741	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4742	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4743	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4744	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4745	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4746	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4747	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4748	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4749	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4750	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4751	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4752	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4753	if [[ $use_openmp = true ]]
4754	then
4755	mrun_com=${mrun_com}" -O $threads_per_task"
4756	fi
4757	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4758	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4759	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4760	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4761	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4762	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4763	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4764	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4765	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4766	if [[ $do_remote = true ]]
4767	then
4768	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4769	fi
4770
4771
4772	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4773	jobfile=jobfile.$RANDOM
4774
4775
4776	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4777	echo "mkdir $TEMPDIR" >> $jobfile
4778	echo "cd $TEMPDIR" >> $jobfile
4779
4780
4781	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4782	if [[ $do_trace = true ]]
4783	then
4784	echo "set -x" >> $jobfile
4785	else
4786	echo "set +vx" >> $jobfile
4787	fi
4788
4789
4790	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4791	# DATEI FUER DEN JOB
4792	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4793	then
4794
4795	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4796	# KOPIEREN
4797	if [[ $restart_run != true ]]
4798	then
4799	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4800	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4801	fi
4802
4803	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4804	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4805	echo "set -x" >> $jobfile
4806	if [[ $host = $localhost ]]
4807	then
4808	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4809	else
4810	if [[ $host != ibmkisti ]]
4811	then
4812	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4813	else
4814	# on KISTI's IBM firewall is only opened on interactive node
4815	echo "localdir=\`pwd\`" >> $jobfile
4816	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4817	fi
4818	fi
4819	echo "export SOURCES_COMPLETE=true" >> $jobfile
4820
4821	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4822	# ARBEITSVERZEICHNIS VERSCHIEBEN
4823	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4824	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4825	echo "execute_mrun=true" >> $jobfile
4826	echo " " >> $jobfile
4827
4828	else
4829
4830	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4831	# SOWIE GEGEBENENFALLS DES MAKEFILES
4832	if [[ $do_compile = true ]]
4833	then
4834
4835	source_catalog=SOURCES_FOR_RUN_$fname
4836
4837	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4838	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4839	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4840	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4841	echo "export SOURCES_COMPLETE=true" >> $jobfile
4842	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4843
4844	for filename in $source_list
4845	do
4846	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4847	echo "cat > $filename << \"%END%\"" >> $jobfile
4848	cat $source_catalog/$filename >> $jobfile
4849	echo " " >> $jobfile
4850	echo "%END%" >> $jobfile
4851	echo " " >> $jobfile
4852	done
4853
4854	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4855	echo "cat > Makefile << \"%END%\"" >> $jobfile
4856	cat $source_catalog/Makefile >> $jobfile
4857	echo " " >> $jobfile
4858	echo "%END%" >> $jobfile
4859	echo " " >> $jobfile
4860
4861	echo "cd - > /dev/null" >> $jobfile
4862
4863	fi
4864
4865
4866	# ABSPEICHERN DER KONFIGURATIONSDATEI
4867	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4868	echo "cat > $config_file << \"%END%\"" >> $jobfile
4869	cat $config_file >> $jobfile
4870	echo "%END%" >> $jobfile
4871	echo " " >> $jobfile
4872
4873
4874	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4875	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4876	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4877	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4878	echo "%END%" >> $jobfile
4879	echo "chmod u+x $mrun_script_name" >> $jobfile
4880	echo "execute_mrun=true" >> $jobfile
4881	echo " " >> $jobfile
4882
4883	fi
4884
4885
4886	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4887	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4888	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4889	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4890	if [[ $do_remote = true ]]
4891	then
4892	(( i = 0 ))
4893	while (( i < iin ))
4894	do
4895	(( i = i + 1 ))
4896	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4897	if [[ "${transin[$i]}" = job ]]
4898	then
4899	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4900	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4901	echo " " >> $jobfile
4902	echo "%END%" >> $jobfile
4903	else
4904	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4905	fi
4906
4907	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4908	echo "if [[ \$? = 1 ]]" >> $jobfile
4909	echo "then" >> $jobfile
4910	echo " echo \" \" " >> $jobfile
4911	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4912	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4913	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4914	echo " execute_mrun=false" >> $jobfile
4915	echo "fi" >> $jobfile
4916	done
4917	fi
4918
4919	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4920	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4921	echo "LOCAL_PWD=$working_directory" >> $jobfile
4922	echo "export LOCAL_PWD" >> $jobfile
4923
4924	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4925	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4926	echo "export LOCAL_MRUN_PATH" >> $jobfile
4927
4928	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4929	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4930	then
4931	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4932	fi
4933
4934	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4935	echo "set -x" >> $jobfile
4936	echo "queue=$queue" >> $jobfile
4937	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4938
4939	echo 'ls -al; echo `pwd`' >> $jobfile
4940	echo "cd \$HOME" >> $jobfile
4941	echo "rm -rf $TEMPDIR" >> $jobfile
4942
4943
4944
4945
4946	# JOB PER SUBJOB STARTEN
4947	if [[ $silent = false ]]
4948	then
4949	printf "\n "
4950	else
4951	printf "\n\n"
4952	fi
4953
4954	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4955	rm -rf $jobfile
4956
4957
4958	fi # ENDE REMOTE-TEIL
4959
4960
4961
4962	# ENDE DER PROZEDUR

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