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source: palm/trunk/SCRIPTS/mrun @ 847

Last change on this file since 847 was 847, checked in by raasch, 12 years ago
mrun -T option not obligatory for lcflow
Property svn:keywords set to `Id Rev`
File size: 187.7 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 847 2012-03-09 08:51:55Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250	# 22/02/12 - Siggi - -s info updated
251	# 22/02/12 - Siggi - case "-s WP" removed
252	# 28/02/12 - BjornM - further adjustments for namelist file check
253	# 09/03/12 - Siggi - -T option not obligatory for lcflow
254
255
256
257	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
258
259	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
260	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
261	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
262
263	AddFilenames=""
264	additional_conditions=""
265	add_source_path=""
266	afname=""
267	archive_save=true
268	archive_system=none
269	check_namelist_files=true
270	compiler_name=""
271	cond1=""
272	cond2=""
273	config_file=.mrun.config
274	coupled_dist=""
275	coupled_mode="mpi1"
276	cpp_opts=""
277	cpp_options=""
278	cpumax=0
279	cpurest=0
280	delete_temporary_catalog=true
281	do_batch=false
282	do_compile=true
283	do_remote=false
284	do_stagein=true
285	do_stageout=true
286	do_trace=false
287	email_notification="none"
288	exclude=""
289	executable=""
290	execution_error=false
291	fimm=false
292	fname=test
293	fromhost=""
294	global_revision=""
295	group_number=none
296	host=""
297	host_file=""
298	hp=""
299	ignore_archive_error=false
300	input_list=""
301	interpreted_config_file=""
302	job_catalog="~/job_queue"
303	job_on_file=""
304	keep_data_from_previous_run=false
305	link_local_input=false
306	link_local_output=false
307	localhost_realname=$(hostname)
308	local_compile=false
309	local_dvrserver_running=.FALSE.
310	locat=normal
311	mainprog=""
312	makefile=""
313	max_par_io_str=""
314	mc=$0
315	while [[ $(echo $mc \| grep -c "/") != 0 ]]
316	do
317	mc=`echo $mc \| cut -f2- -d"/"`
318	done
319	module_calls=""
320	mrun_script_name=$mc
321	netcdf_inc=""
322	netcdf_lib=""
323	netcdf_support=false
324	node_usage=default
325	numprocs=""
326	numprocs_atmos=0
327	numprocs_ocean=0
328	OOPT=""
329	openmp=false
330	output_list=""
331	package_list=""
332	punkte="..........................................................."
333	p3d_suffix=""
334	queue=none
335	read_from_config=""
336	restart_run=false
337	if [[ `hostname` = rte10 ]]
338	then
339	return_addres=133.5.185.60
340	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
341	elif [[ `hostname` = climate0 ]]
342	then
343	return_addres=165.132.26.68
344	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
345	else
346	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
347	fi
348	return_password=""
349	return_username=$LOGNAME
350	remotecall=false
351	remote_username=""
352	run_coupled_model=false
353	run_mode=""
354	scirocco=false
355	store_on_archive_system=false
356	striche=" ----------------------------------------------------------------------------"
357	silent=false
358	source_list=""
359	source_path=SOURCE
360	tasks_per_node=""
361	threads_per_task=1
362	tmpcreate=false
363	tmp_data_catalog=""
364	transfer_problems=false
365	usern=$LOGNAME
366	use_openmp=false
367	working_directory=`pwd`
368	TOPT=""
369	XOPT=""
370	zeit=$( date \| cut -c 12-19 )
371
372	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
373	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
374
375	typeset -R30 calltime
376	typeset -L20 spalte1
377	typeset -L40 spalte2
378	typeset -L60 spalte3
379	typeset -L35 string1=`date`
380	typeset -L12 string2=$usern
381	typeset -L12 string3=$localhost_realname
382	typeset -L12 string4
383	typeset -L12 string5
384	typeset -L30 version="MRUN 2.0 Rev$Rev: 847 $"
385
386
387
388	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
389	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
390
391	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
392	# EXPORTIERT WERDEN
393	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
394	export group_number input_list memory numprocs output_list queue run_mode
395
396
397
398	# FEHLERBEHANDLUNG
399	# BEI EXIT:
400	trap 'rm -rf $working_directory/tmp_mrun
401	if [[ $locat != localhost ]]
402	then
403	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
404	# then
405	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
406	#MRUN-calls on $localhost
407	#
408	#date and time user localhost remotehost termination mrun-command
409	#--------------------------------------------------------------------------------------------------------------------
410	#%STATEND%
411	# chmod 666 ${mrun_path}/statistik/mrun_statistik
412	# fi
413	#
414	# # EINTRAG IN DIE STATISTIK-DATEI
415	# string4=$host
416	# string5=$locat
417	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
418	# then
419	# if [[ $do_batch = true ]]
420	# then
421	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
422	# else
423	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
424	# fi
425	# fi
426	echo " " > /dev/null
427	fi
428
429	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
430	then
431
432	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
433	(( i = 0 ))
434	while (( i < iec ))
435	do
436	(( i = i + 1 ))
437	printf "\n *** Execution of ERROR-command:\n"
438	printf " >>> ${err_command[$i]}\n"
439	eval ${err_command[$i]}
440	done
441	if [[ -n $interpreted_config_file ]] then
442	rm -rf $interpreted_config_file
443	fi
444	if [[ -n .mrun_environment ]] then
445	rm -rf .mrun_environment
446	fi
447	if [[ $tmpcreate = true ]]
448	then
449	printf "\n *** Contents of \"$TEMPDIR\":\n"
450	ls -al; cd
451	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
452	fi
453	if [[ "$dvrserver_id" != "" ]]
454	then
455	echo "+++ killing dvrserver_id=$dvrserver_id"
456	kill $dvrserver_id
457	fi
458	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
459	then
460	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
461	fi
462	printf "\n\n+++ MRUN killed \n\n"
463	elif [[ $locat != control_c ]]
464	then
465	printf "\n\n --> all actions finished\n\n"
466	printf " Bye, bye $usern !!\n\n"
467	fi' exit
468
469
470	# BEI TERMINAL-BREAK:
471	trap 'rm -rf $working_directory/tmp_mrun
472	rm -rf $working_directory/tmp_check_namelist_files
473	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
474	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
475	then
476	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
477	fi
478	if [[ "$dvrserver_id" != "" ]]
479	then
480	echo "+++ killing dvrserver_id=$dvrserver_id"
481	kill $dvrserver_id
482	fi
483	printf "\n+++ MRUN killed by \"^C\" \n\n"
484	locat=control_c
485	exit
486	' 2
487
488
489	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
490	# BEEN SET
491	if [[ "$PALM_BIN" = "" ]]
492	then
493	printf "\n +++ environment variable PALM_BIN has not been set"
494	printf "\n please set it to the directory where the PALM scripts are located"
495	locat=palm_bin; exit
496	fi
497	export PATH=$PALM_BIN:$PATH
498
499
500
501	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
502	# FUER FOLGEJOBS BENOETIGT WIRD
503	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
504	do
505	case $option in
506	(a) afname=$OPTARG;;
507	(A) store_on_archive_system=true; mc="$mc -A";;
508	(b) do_batch=true; mc="$mc -b";;
509	(B) delete_temporary_catalog=false; mc="$mc -B";;
510	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
511	(C) restart_run=true; mc="$mc -C";;
512	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
513	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
514	(F) job_on_file="-D"; mc="$mc -F";;
515	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
516	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
517	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
518	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
519	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
520	(I) ignore_archive_error=true; mc="$mc -I";;
521	(k) keep_data_from_previous_run=true; mc="$mc -k";;
522	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
523	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
524	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
525	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
526	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
527	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
528	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
529	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
530	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
531	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
532	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
533	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
534	(S) read_from_config=false; mc="$mc -S";;
535	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
536	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
537	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
538	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
539	(v) silent=true; mc="$mc -v";;
540	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
541	(x) do_trace=true;set -x; mc="$mc -x";;
542	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
543	(y) ocean_file_appendix=true; mc="$mc -y";;
544	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
545	(z) check_namelist_files=false; mc="$mc -z";;
546	(\?) printf "\n +++ unknown option $OPTARG \n"
547	printf "\n --> type \"$0 ?\" for available options \n"
548	locat=parameter;exit;;
549	esac
550	done
551
552
553	# EVTL. POSITIONSPARAMETER EINLESEN
554	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
555	shift OPTIND-1
556
557
558	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
559	if [[ "$1" = "?" ]]
560	then
561	(printf "\n *** mrun can be called as follows:\n"
562	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
563	printf "\n Description of available options:\n"
564	printf "\n Option Description Default-Value"
565	printf "\n -a base name of input files equiv. -d"
566	printf "\n -A archiving when using file-attribute fl"
567	printf "\n -b batch-job on local machine ---"
568	printf "\n -B do not delete temporary directory at end ---"
569	printf "\n -c configuration file .mrun.config"
570	printf "\n -d base name of files attached to program test"
571	printf "\n -D preprocessor(cpp)-directives \"\" "
572	printf "\n -F create remote job file only ---"
573	printf "\n -h execution host $localhost_realname"
574	printf "\n -i INPUT control list \"\" "
575	printf "\n -I archiving errors of previous batch-jobs"
576	printf "\n will be ignored"
577	printf "\n -k keep data from previous run"
578	printf "\n -K additional conditions for controling"
579	printf "\n usage of conditional code and"
580	printf "\n env-variables in configuration file \"\" "
581	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
582	printf "\n -M Makefile name Makefile"
583	printf "\n -n node usage (shared/not_shared) depending on -h"
584	printf "\n -o OUTPUT control list \"\" "
585	printf "\n -O use OpenMP ---"
586	printf "\n -p software package list \"\" "
587	printf "\n -q queue \"$queue\" "
588	printf "\n -r run control list (combines -i -o) \"\" "
589	printf "\n -s filenames of routines to be compiled \"\" "
590	printf "\n must end with .f, .f90, .F, or .c !"
591	printf "\n use \"..\" for more than one file and wildcards"
592	printf "\n -s LM compiles all locally modified files"
593	printf "\n -S config file interpreted by shellscript ---"
594	printf "\n -t allowed cpu-time in seconds (batch) 0"
595	printf "\n -T tasks per node depending on -h"
596	printf "\n -u username on remote machine \"\" "
597	printf "\n -v no prompt for confirmation ---"
598	printf "\n -w maximum parallel io streams as given by -X"
599	printf "\n -x tracing of mrun for debug purposes ---"
600	printf "\n -X # of processors (on parallel machines) 1"
601	printf "\n -y add appendix \"_O\" to all local output"
602	printf "\n files (ocean precursor runs followed by"
603	printf "\n coupled atmosphere-ocean runs) ---"
604	printf "\n -Y run coupled model, \"#1 #2\" with"
605	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
606	printf "\n -z no parameter file check ---"
607	printf "\n "
608	printf "\n Possible values of positional parameter <modus>:"
609	printf "\n \"?\" - this outline \n\n") \| more
610	exit
611	elif [[ "$1" != "" ]]
612	then
613	printf "\n +++ positional parameter $1 unknown \n"
614	locat=parameter; exit
615	fi
616
617
618
619	# KURZE STARTMELDUNG
620	printf "\n*** $version "
621	printf "\n will be executed. Please wait ..."
622
623
624
625	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
626	if [[ ! -f $config_file ]]
627	then
628	printf "\n\n +++ configuration file: "
629	printf "\n $config_file"
630	printf "\n does not exist"
631	locat=connect; exit
632	fi
633
634
635	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
636	line=""
637	grep "%host_identifier" $config_file > tmp_mrun
638	while read line
639	do
640	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
641	then
642	HOSTNAME=`echo $line \| cut -d" " -s -f2`
643	host_identifier=`echo $line \| cut -d" " -s -f3`
644	if [[ $localhost_realname = $HOSTNAME ]]
645	then
646	localhost=$host_identifier
647	break
648	fi
649	fi
650	done < tmp_mrun
651
652	if [[ "$localhost" = "" ]]
653	then
654	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
655	printf "\n for local host \"$localhost_realname\"."
656	printf "\n Please add line"
657	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
658	printf "\n to the configuration file."
659	locat=localhost; exit
660	fi
661
662
663	# HOSTSPEZIFISCHE VARIABLEN SETZEN
664	case $localhost_realname in
665	(r1\|r2\|h01\|b01) archive_system=tivoli;;
666	(cs*) archive_system=ut;;
667	(fimm.bccs.uib.no) fimm=true;;
668	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
669	(scirocco) scirocco=true;;
670	esac
671
672
673
674	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
675	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
676	[[ "$afname" = "" ]] && afname=$fname
677
678
679	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
680	if [[ "$run_mode" != "" ]]
681	then
682	input_list="$input_list $run_mode"
683	output_list="$output_list $run_mode"
684	fi
685
686
687	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
688	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
689	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
690	# STARTET)
691	if [[ "$fromhost" = "" ]]
692	then
693	fromhost=$localhost
694	fi
695
696
697	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
698	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
699	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
700	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
701	if [[ -n $host && "$host" != $localhost ]]
702	then
703	do_batch=true
704	do_remote=true
705	case $host in
706	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
707	(*) printf "\n"
708	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
709	printf "\n is not available"
710	locat=nqs; (( iec = 0 )); exit;;
711	esac
712	else
713	host=$localhost
714	fi
715
716
717	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
718	if [[ -n $additional_conditions ]]
719	then
720	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
721	cond1=`echo $additional_conditions \| cut -d" " -f1`
722	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
723	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
724	if [[ -n $dummy ]]
725	then
726	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
727	locat=options; exit
728	fi
729	block=_$cond1
730	[[ -n $cond2 ]] && block=${block}_$cond2
731	fi
732
733
734	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
735	if [[ $run_coupled_model = true ]]
736	then
737
738	if [[ -n $coupled_dist ]]
739	then
740
741	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
742	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
743
744	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
745	then
746
747	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
748	printf "\n PEs (total) : $numprocs"
749	printf "\n PEs (atmosphere): $numprocs_atmos"
750	printf "\n PEs (ocean) : $numprocs_ocean"
751	locat=coupling; exit
752
753	fi
754
755	else
756
757	(( numprocs_ocean = $numprocs / 2 ))
758	(( numprocs_atmos = $numprocs / 2 ))
759
760	fi
761	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
762
763	# GET coupled_mode FROM THE CONFIG FILE
764	line=""
765	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
766	while read line
767	do
768	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
769	then
770	coupled_mode="mpi2"
771	fi
772	done < tmp_mrun
773
774	fi
775
776
777	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
778	# ARCHIVIERUNG FEHLGESCHLAGEN IST
779	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
780	then
781	if [[ $ignore_archive_error = false ]]
782	then
783	printf "\n +++ data archiving of previous run failed"
784	printf "\n see directory \~/job_queue on remote machine"
785	locat=archive; exit
786	else
787	printf "\n +++ warning: data archiving in a previous run failed"
788	printf "\n MRUN continues, trying to get backup copy"
789	fi
790	fi
791
792
793
794	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
795	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
796	if [[ "$read_from_config" = false ]]
797	then
798
799	[[ $silent = false ]] && printf "\n Reading the configuration file... "
800	while read zeile
801	do
802	[[ $silent = false ]] && printf "."
803
804
805	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
806	# ERSETZEN
807	eval zeile=\"$zeile\"
808
809
810	# INTERPRETATION DER ZEILE
811	if [[ "$(echo $zeile)" = "" ]]
812	then
813	# LEERZEILE, KEINE AKTION
814	continue
815
816	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
817	then
818
819	# ZEILE IST KOMMENTARZEILE
820	true
821
822	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
823	then
824
825	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
826	zeile=$(echo $zeile \| cut -c2-)
827	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
828	var=`echo $zeile \| cut -d" " -f1`
829	value=`echo $zeile \| cut -d" " -s -f2`
830	for_host=`echo $zeile \| cut -d" " -s -f3`
831	for_cond1=`echo $zeile \| cut -d" " -s -f4`
832	for_cond2=`echo $zeile \| cut -d" " -s -f5`
833
834	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
835	then
836
837	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
838	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
839	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
840
841
842	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
843	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
844	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
845	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
846	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
847	# KONFIGURATIONSDATEI
848	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
849	then
850	eval $var=\$value
851
852	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
853	if [[ $do_trace = true ]]
854	then
855	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
856	fi
857	fi
858
859	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
860	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
861	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
862	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
863	if [[ $var = host ]]
864	then
865	if [[ -n $host && "$host" != $localhost ]]
866	then
867	do_batch=true
868	do_remote=true
869	case $host in
870	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
871	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
872	printf "\n is not available"
873	locat=nqs; exit;;
874	esac
875	else
876	host=$localhost
877	fi
878	fi
879
880	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
881	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
882	# DEN PROGRAMMEN BENOETIGT WERDEN
883	export $var
884	fi
885
886
887
888
889	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
890	then
891
892	# ZEILE DEFINIERT ERROR-KOMMANDO
893	(( iec = iec + 1 ))
894	zeile=$(echo $zeile \| cut -c4-)
895	err_command[$iec]="$zeile"
896
897	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
898	then
899
900	# ZEILE DEFINIERT INPUT-KOMMANDO
901	(( iic = iic + 1 ))
902	zeile=$(echo $zeile \| cut -c4-)
903	in_command[$iic]="$zeile"
904
905	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
906	then
907
908	# ZEILE DEFINIERT OUTPUT-KOMMANDO
909	(( ioc = ioc + 1 ))
910	zeile=$(echo $zeile \| cut -c4-)
911	out_command[$ioc]="$zeile"
912
913	else
914
915	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
916	# s2a: in/out - Feld
917	# s2b: loc - Feld (optional)
918	# s2c: tr/ar - Feld (optional)
919	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
920	s1=`echo $zeile \| cut -d" " -f1`
921	s2=`echo $zeile \| cut -d" " -s -f2`
922	s2a=$(echo $s2 \| cut -d":" -f1)
923	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
924	then
925	s2b=""
926	s2c=""
927	else
928	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
929	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
930	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
931	fi
932	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
933	s3=`echo $zeile \| cut -d" " -f3`
934	s4=`echo $zeile \| cut -d" " -s -f4`
935	s5=`echo $zeile \| cut -d" " -s -f5`
936	s6=`echo $zeile \| cut -d" " -s -f6`
937
938
939	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
940	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
941	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
942	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
943	# HANDEN SEIN MUSS (D.H. s2b = loc)
944	IFSALT="$IFS"; IFS="$IFS:"
945	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
946	then
947	found=false
948	for actual in $input_list
949	do
950	for formal in $s3
951	do
952	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
953	done
954	done
955	if [[ $found = true ]]
956	then
957	(( iin = iin + 1 ))
958	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
959	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
960	extin[$iin]=$s6
961	fi
962	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
963	then
964	found=false
965	for actual in $output_list
966	do
967	for formal in $s3
968	do
969	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
970	done
971	done
972	if [[ $found = true ]]
973	then
974	(( iout = iout + 1 ))
975	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
976	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
977	fi
978	elif [[ "$s2a" != in && "$s2a" != out ]]
979	then
980	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
981	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
982	locat=connect; exit
983	fi
984	IFS="$IFSALT"
985	fi
986	done < $config_file
987
988	else
989
990
991	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
992	[[ $silent = false ]] && printf "..."
993	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
994	export interpreted_config_file=.icf.$RANDOM
995
996
997
998	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
999	# VERFUEGUNG STELLEN
1000	cat > .mrun_environment << %%END%%
1001	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1002	config_file = '$config_file', do_remote = '$do_remote',
1003	do_trace = '$do_trace', host = '$host',
1004	input_list = '$input_list', icf = '$interpreted_config_file',
1005	localhost = '$localhost', output_list = '$output_list' /
1006
1007	%%END%%
1008
1009	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1010	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1011	mrun_memory=$memory
1012	mrun_group_number=$group_number
1013	mrun_cpumax=$cpumax
1014	mrun_numprocs=$numprocs
1015
1016	if [[ $localhost_realname = "sx-fep" ]]
1017	then
1018	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1019	else
1020
1021	if [[ "$host" != $localhost ]]
1022	then
1023
1024	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1025	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1026	if [[ $? != 0 ]]
1027	then
1028	printf "\n\n +++ no interpret_config found"
1029	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1030	locat=interpret_config; exit
1031	fi
1032	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1033	$interpret_config_executable
1034
1035	else
1036
1037	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1038	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1039	then
1040	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1041	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1042	locat=interpret_config; exit
1043	else
1044	interpret_config${block}.x
1045	fi
1046
1047	fi
1048	fi
1049	rm .mrun_environment
1050
1051
1052	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1053	chmod u+x $interpreted_config_file
1054	export PATH=$PATH:.
1055	. $interpreted_config_file
1056	rm $interpreted_config_file
1057
1058
1059	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1060	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1061	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1062	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1063	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1064	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1065	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1066
1067	fi
1068
1069
1070	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1071	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1072	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1073	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1074	if [[ "$SOURCES_COMPLETE" = "" ]]
1075	then
1076
1077	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1078	# VEREINBART WURDE
1079	source_path=""
1080	line=""
1081	grep "%source_path" $config_file > tmp_mrun
1082	while read line
1083	do
1084	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1085	then
1086	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1087	then
1088	global_source_path=`echo $line \| cut -d" " -f2`
1089	fi
1090	fi
1091	done < tmp_mrun
1092
1093	line=""
1094	found=false
1095	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1096	while read line
1097	do
1098	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1099	then
1100	if [[ $found = true ]]
1101	then
1102	printf "\n\n +++ more than one source path found in configuration file"
1103	printf "\n for local host \"$localhost\" "
1104	locat=source_path; exit
1105	fi
1106	source_path=`echo $line \| cut -d" " -f2`
1107	found=true
1108	fi
1109	done < tmp_mrun
1110	rm tmp_mrun
1111
1112	if [[ "$source_path" = "" ]]
1113	then
1114	if [[ "$global_source_path" != "" ]]
1115	then
1116	source_path=$global_source_path
1117	else
1118	printf "\n\n +++ no source path found in configuration file"
1119	printf "\n for local host \"$localhost\" "
1120	locat=source_path; exit
1121	fi
1122	fi
1123	eval source_path=$source_path
1124
1125	if [[ ! -d $source_path ]]
1126	then
1127	printf "\n\n +++ source path \"$source_path\" on local host"
1128	printf "\n \"$localhost\" does not exist"
1129	locat=source_path; exit
1130	fi
1131
1132	fi
1133
1134
1135	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1136	# DURCH OPTION -G MITGETEILT)
1137	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1138	then
1139	global_revision=`svnversion $source_path 2>/dev/null`
1140	global_revision="Rev: $global_revision"
1141	fi
1142
1143
1144	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1145	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1146	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1147	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1148	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1149	if [[ -n $host && "$host" != $localhost ]]
1150	then
1151	do_batch=true
1152	do_remote=true
1153	case $host in
1154	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1155	(*) printf "\n"
1156	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1157	printf "\n is not available"
1158	locat=nqs; (( iec = 0 )); exit;;
1159	esac
1160	else
1161	host=$localhost
1162	fi
1163
1164
1165	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1166	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1167	then
1168
1169	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1170	if [[ ! -n $numprocs ]]
1171	then
1172	printf "\n"
1173	printf "\n +++ option \"-K parallel\" requires additional specification"
1174	printf "\n of the number of processors to be used by"
1175	printf "\n mrun-option \"-X\" or by environment-variable"
1176	printf "\n \"numprocs\" in the configuration file"
1177	locat=numprocs; (( iec = 0 )); exit
1178	fi
1179
1180	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1181	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1182	# GESAMTPROZESSORANZAHL IST
1183	if [[ "$tasks_per_node" = "" && $host != lcflow ]]
1184	then
1185	printf "\n"
1186	printf "\n +++ option \"-T\" (tasks per node) is missing"
1187	printf "\n set -T option or define tasks_per_node in the config file"
1188	locat=tasks_per_node; (( iec = 0 )); exit
1189	fi
1190	(( ival = $tasks_per_node ))
1191	(( pes = numprocs ))
1192	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1193	# then
1194	# (( pes = pes - 1 ))
1195	# fi
1196	(( ii = pes / ival ))
1197	if (( pes - ii * ival > 0 ))
1198	then
1199	printf "\n"
1200	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1201	printf "\n divisor of the total number of processors (option \"-X\")"
1202	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1203	locat=tasks_per_node; (( iec = 0 )); exit
1204	fi
1205
1206
1207	# IBMY HAT NUR EINEN KNOTEN
1208	if [[ $host = ibmy ]]
1209	then
1210	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1211	then
1212	printf "\n"
1213	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1214	printf "\n total number of processors (option \"-X\")"
1215	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1216	locat=tasks_per_node; (( iec = 0 )); exit
1217	fi
1218	fi
1219
1220
1221	# SETTINGS FOR SUBJOB-COMMAND
1222	TOPT="-T $tasks_per_node"
1223	OOPT="-O $threads_per_task"
1224
1225	# GESAMTZAHL DER KNOTEN BESTIMMEN
1226	if [[ "$tasks_per_node" != "" ]]
1227	then
1228	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1229	fi
1230
1231	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1232	# SETZEN
1233	if [[ $node_usage = default ]]
1234	then
1235	if [[ $host = ibms ]]
1236	then
1237	node_usage=shared
1238	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1239	then
1240	node_usage=singlejob
1241	else
1242	node_usage=not_shared
1243	fi
1244	fi
1245
1246	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1247	then
1248	printf "\n"
1249	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1250	printf "\n \"shared\" or \"not_shared\""
1251	locat=tasks_per_node; (( iec = 0 )); exit
1252	fi
1253
1254	fi
1255
1256	# PRUEFEN, OB HOSTFILE EXISTIERT
1257	if [[ -n $hostfile ]]
1258	then
1259	if [[ ! -f $hostfile ]]
1260	then
1261	printf "\n"
1262	printf "\n +++ hostfile \"$hostfile\" does not exist"
1263	locat=hostfile; exit
1264	fi
1265	fi
1266
1267	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1268	if [[ $host = ibmy && $do_remote = false ]]
1269	then
1270	if [[ ! -f $HOME/.rhosts ]]
1271	then
1272	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1273	printf "\n\n *** file:"
1274	printf "\n $HOME/.rhosts"
1275	printf "\n was created\n"
1276	fi
1277	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1278	then
1279	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1280	printf "\n\n *** file:"
1281	printf "\n $HOME/.rhosts"
1282	printf "\n was extended by the name of the current host\n"
1283	fi
1284	fi
1285
1286
1287	# Set default value for the maximum number of parallel io streams
1288	if [[ "$maximum_parallel_io_streams" = "" ]]
1289	then
1290	maximum_parallel_io_streams=$numprocs
1291	fi
1292
1293
1294	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1295	if [[ $queue = none ]]
1296	then
1297	case $host in
1298	(ibmh) queue=no_class;;
1299	(ibmkisti) queue=class.32plus;;
1300	(ibmy) queue=parallel;;
1301	(lckyoto) queue=ph;;
1302	(lcsgib) queue=testq;;
1303	(lcsgih) queue=testq;;
1304	(lctit) queue=S;;
1305	(nech) queue=none;;
1306	(necriam) queue=SP;;
1307	(unics) queue=unics;;
1308	esac
1309	fi
1310
1311
1312	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1313	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1314	# ERMITTELN
1315	(( i = 0 ))
1316	while (( i < iin ))
1317	do
1318	(( i = i + 1 ))
1319	(( maxcycle = 0 ))
1320
1321	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1322	if [[ "${actionin[$i]}" = di ]]
1323	then
1324	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1325	# REM-MASCHINE AUSWERTEN
1326	eval filename=${pathin[$i]}/${endin[$i]}
1327	else
1328	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1329	# REM-MASCHINE AUSWERTEN
1330	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1331	fi
1332
1333	# PRUEFEN AUF VORHANDENSEIN
1334	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1335	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1336	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1337	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1338	then
1339	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1340	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1341	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1342	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1343	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1344	if [[ "${transin[$i]}" != "locopt" ]]
1345	then
1346	printf "\n\n +++ INPUT-file: "
1347	if [[ "${extin[$i]}" = "" ]]
1348	then
1349	printf "\n $filename"
1350	else
1351	printf "\n $filename.${extin[$i]}"
1352	fi
1353	printf "\n does not exist\n"
1354	locat=input; exit
1355	else
1356	transin[$i]="unavailable"
1357	fi
1358	else
1359
1360	# ZYKLUSNUMMER FESTSTELLEN
1361	ls -1 -d $filename > filelist 2>/dev/null
1362	ls -1 -d $filename.* >> filelist 2>/dev/null
1363	while read zeile
1364	do
1365	cycle=$(print $zeile \| cut -f2 -d".")
1366	if [[ "$cycle" = "$zeile" ]]
1367	then
1368	(( icycle = 0 ))
1369	elif [[ "$cycle" = "${extin[$i]}" ]]
1370	then
1371	(( icycle = 0 ))
1372	else
1373	(( icycle = $cycle ))
1374	fi
1375	if (( icycle > maxcycle ))
1376	then
1377	(( maxcycle = icycle ))
1378	file_to_be_used=$zeile
1379	fi
1380	done <filelist
1381	rm filelist
1382
1383	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1384	if (( maxcycle > 0 ))
1385	then
1386	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1387	then
1388	filename=${filename}.$maxcycle.${extin[$i]}
1389	else
1390	filename=${filename}.$maxcycle
1391	fi
1392	else
1393	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1394	then
1395	filename=${filename}.${extin[$i]}
1396	fi
1397	fi
1398
1399	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1400	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1401	absnamein[$i]=$filename
1402	if (( maxcycle > 0 ))
1403	then
1404	if [[ "${actionin[$i]}" = di ]]
1405	then
1406	frelin[$i]=${endin[$i]}.$maxcycle
1407	else
1408	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1409	fi
1410	else
1411	if [[ "${actionin[$i]}" = di ]]
1412	then
1413	frelin[$i]=${endin[$i]}
1414	else
1415	frelin[$i]=${afname}${endin[$i]}
1416	fi
1417	fi
1418
1419	fi
1420	done
1421
1422
1423	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1424	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1425	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1426	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1427	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1428	(( i = 0 ))
1429	while (( i < iout ))
1430	do
1431	(( i = i + 1 ))
1432	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1433	then
1434	if [[ "${actionout[$i]}" = tr ]]
1435	then
1436	actionout[$i]=""
1437	elif [[ "${actionout[$i]}" = trpe ]]
1438	then
1439	actionout[$i]=pe
1440	elif [[ "${actionout[$i]}" = tra ]]
1441	then
1442	actionout[$i]=a
1443	fi
1444	(( maxcycle = 0 ))
1445	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1446	eval catalogname=${pathout[$i]}
1447	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1448	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1449	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1450	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1451	then
1452
1453	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1454	if cat /dev/null > $filename
1455	then
1456	rm $filename
1457	else
1458
1459	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1460	if [[ ! -d $catalogname ]]
1461	then
1462	if mkdir -p $catalogname
1463	then
1464	printf "\n\n *** directory:"
1465	printf "\n $catalogname"
1466	printf "\n was created\n"
1467	else
1468	printf "\n\n +++ OUTPUT-file:"
1469	printf "\n $filename"
1470	printf "\n cannot be created, because directory does not exist"
1471	printf "\n and cannot be created either"
1472	printf "\n"
1473	locat=output ; exit
1474	fi 2>/dev/null
1475	else
1476	printf "\n\n +++ OUTPUT-file:"
1477	printf "\n $filename"
1478	printf "\n cannot be created, although directory exists"
1479	printf "\n"
1480	locat=output ; exit
1481	fi
1482	fi 2>/dev/null
1483	else
1484
1485	# ZYKLUSNUMMER FESTSTELLEN
1486	ls -1 -d $filename > filelist 2>/dev/null
1487	ls -1 -d $filename.* >> filelist 2>/dev/null
1488	while read zeile
1489	do
1490	cycle=$(print $zeile \| cut -f2 -d".")
1491	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1492	then
1493	(( icycle = 1 ))
1494	else
1495	(( icycle = $cycle + 1 ))
1496	fi
1497	if (( icycle > maxcycle ))
1498	then
1499	(( maxcycle = icycle ))
1500	fi
1501	done <filelist
1502	rm filelist
1503	fi
1504
1505	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1506	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1507	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1508	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1509	if [[ "${actionout[$i]}" != a ]]
1510	then
1511	if (( maxcycle > 0 ))
1512	then
1513	filename=${filename}.$maxcycle
1514	if cat /dev/null > $filename
1515	then
1516	rm $filename
1517	else
1518	printf "\n +++ OUTPUT-file:"
1519	printf "\n $filename"
1520	printf "\n cannot be created"
1521	locat=output ; exit
1522	fi
1523	fi
1524	else
1525	(( maxcycle = maxcycle - 1 ))
1526	if (( maxcycle > 0 ))
1527	then
1528	filename=${filename}.$maxcycle
1529	fi
1530	fi
1531
1532	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1533	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1534	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1535	pathout[$i]=$filename
1536	if (( maxcycle > 0 ))
1537	then
1538	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1539	else
1540	frelout[$i]=${fname}${endout[$i]}
1541	fi
1542
1543	fi
1544	done
1545
1546
1547	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1548	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1549	then
1550	if [[ "$dvr_inc" = "" ]]
1551	then
1552	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1553	printf "\n This is required for the dvrp_graphics package.\n"
1554	locat=dvr; exit
1555	fi
1556	if [[ "$dvr_lib" = "" ]]
1557	then
1558	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1559	printf "\n This is required for the dvrp_graphics package.\n"
1560	locat=dvr; exit
1561	fi
1562	fi
1563
1564
1565	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1566	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1567	# UEBERSETZT ZU WERDEN)
1568	if [[ "$mainprog" = "" && "$executable" = "" ]]
1569	then
1570	printf "\n +++ neither main program nor executable defined"
1571	locat=source; exit
1572	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1573	then
1574	printf "\n +++ main program as well as executable defined"
1575	locat=source; exit
1576	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1577	then
1578	do_compile=false
1579	fi
1580
1581
1582	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1583	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1584	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1585	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1586	then
1587	rm -rf SOURCES_FOR_RUN_$fname
1588	mkdir SOURCES_FOR_RUN_$fname
1589	fi
1590
1591
1592	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1593	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1594	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1595	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1596	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1597	then
1598
1599	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1600
1601	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1602	then
1603
1604	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1605	source_list=""
1606	cd $source_path
1607
1608
1609	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1610	if [[ ! -d .svn ]]
1611	then
1612	printf "\n\n +++ source directory"
1613	printf "\n \"$source_path\" "
1614	printf "\n is not under control of \"subversion\"."
1615	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1616	fi
1617
1618
1619	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1620	Filenames=""
1621	svn status > tmp_mrun
1622	while read line
1623	do
1624	firstc=`echo $line \| cut -c1`
1625	if [[ $firstc = M \|\| $firstc = "?" ]]
1626	then
1627	Name=`echo "$line" \| cut -c8-`
1628	extension=`echo $Name \| cut -d. -f2`
1629	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1630	then
1631	Filenames="$Filenames "$Name
1632	fi
1633	fi
1634	done < tmp_mrun
1635
1636
1637	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1638	for dateiname in $Filenames
1639	do
1640	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1641	source_list=$source_list"$dateiname "
1642	done
1643
1644	cd - > /dev/null
1645
1646
1647	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1648	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1649	# VORHANDEN
1650	elif [[ "$source_list" != "" && $restart_run != true ]]
1651	then
1652
1653	cd $source_path
1654
1655	for filename in $source_list
1656	do
1657
1658	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1659	if [[ $(print $filename \| grep -c "/") != 0 ]]
1660	then
1661	printf "\n +++ source code file: $filename"
1662	printf "\n must not contain (\"/\") "
1663	locat=source; exit
1664	fi
1665
1666	if [[ ! -f $filename ]]
1667	then
1668	printf "\n +++ source code file: $filename"
1669	printf "\n does not exist"
1670	locat=source; exit
1671	else
1672	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1673	fi
1674
1675	done
1676
1677	cd - > /dev/null
1678
1679	fi
1680
1681
1682	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1683	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1684	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1685	if [[ $restart_run != true ]]
1686	then
1687
1688	if [[ ! -f "$source_path/$mainprog" ]]
1689	then
1690	printf "\n\n +++ main program: $mainprog"
1691	printf "\n does not exist in source directory"
1692	printf "\n \"$source_path\"\n"
1693	locat=source; exit
1694	else
1695	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1696	then
1697	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1698	source_list=${mainprog}" $source_list"
1699	fi
1700	fi
1701	fi
1702
1703
1704	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1705	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1706	if [[ "$restart_run" != true ]]
1707	then
1708	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1709	if [[ ! -f $makefile ]]
1710	then
1711	printf "\n +++ file \"$makefile\" does not exist"
1712	locat=make; exit
1713	else
1714	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1715	fi
1716	fi
1717
1718
1719	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1720	if [[ $restart_run != true && "$add_source_path" != "" ]]
1721	then
1722
1723	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1724	if [[ ! -d $add_source_path ]]
1725	then
1726	printf "\n\n +++ WARNING: additional source code directory"
1727	printf "\n \"$add_source_path\" "
1728	printf "\n does not exist or is not a directory."
1729	printf "\n No source code will be used from this directory!\n"
1730	add_source_path=""
1731	sleep 3
1732	else
1733
1734	cd $add_source_path
1735	found=false
1736
1737	Names=$(ls -1 *.f90 2>&1)
1738	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1739	Names=$(ls -1 *.F90 2>&1)
1740	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1741	Names=$(ls -1 *.F 2>&1)
1742	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1743	Names=$(ls -1 *.f 2>&1)
1744	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1745	Names=$(ls -1 *.c 2>&1)
1746	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1747
1748	cd - > /dev/null
1749	cd SOURCES_FOR_RUN_$fname
1750
1751	# COPY MAKEFILE IF EXISTING
1752	if [[ -f $add_source_path/Makefile ]]
1753	then
1754	printf "\n\n *** user Makefile from directory"
1755	printf "\n \"$add_source_path\" is used \n"
1756	sleep 1
1757	cp $add_source_path/Makefile .
1758	fi
1759
1760	for dateiname in $AddFilenames
1761	do
1762	if [[ -f $dateiname ]]
1763	then
1764	printf "\n +++ source code file \"$dateiname\" found in additional"
1765	printf "\n source code directory \"$add_source_path\" "
1766	printf "\n but was also given with option \"-s\" which means that it should be taken"
1767	printf "\n from directory \"$source_path\"."
1768	locat=source; exit
1769	fi
1770
1771	cp $add_source_path/$dateiname .
1772	source_list="$source_list $dateiname"
1773
1774	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1775	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1776	then
1777	printf "\n\n +++ user file \"$dateiname\" "
1778	printf "\n is not listed in Makefile \n"
1779	locat=source; exit
1780	else
1781
1782	# Default User-Interface von der Liste entfernen, falls Datei
1783	# ein User-Interface enthaelt
1784	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1785	# then
1786	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1787	# then
1788	# rm -rf user_interface.f90
1789	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1790	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1791	# printf "\n since a user-interface is found in file"
1792	# printf "\n \"$add_source_path/$dateiname\" \n"
1793	# sleep 3
1794	# else
1795	if [[ $found = false ]]
1796	then
1797	found=true
1798	printf "\n\n *** following user file(s) added to the"
1799	printf " files to be translated:\n "
1800	fi
1801	printf "$dateiname "
1802	sleep 0.5
1803	fi
1804	done
1805	[[ $found = true ]] && printf "\n"
1806	cd - > /dev/null
1807	fi
1808	fi
1809
1810
1811	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1812	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1813	if [[ $restart_run != true && -n $package_list ]]
1814	then
1815
1816	cd $source_path
1817
1818	for package in $package_list
1819	do
1820
1821	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1822
1823	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1824	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1825	# LIEFERT
1826	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1827
1828
1829	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1830	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1831	for source_list_name in $package_source_list
1832	do
1833	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1834	then
1835
1836	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1837	ending=`echo $source_list_name \| cut -f2 -d.`
1838	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1839	then
1840	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1841	source_list="$source_list $source_list_name"
1842	fi
1843	fi
1844	done
1845	done
1846
1847	cd - > /dev/null
1848	fi
1849
1850
1851	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1852	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1853	# if [[ "$restart_run" != true ]]
1854	# then
1855	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1856	# if [[ ! -f $makefile ]]
1857	# then
1858	# printf "\n +++ file \"$makefile\" does not exist"
1859	# locat=make; exit
1860	# else
1861	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1862	# fi
1863	# fi
1864
1865	fi # do_compile=true
1866
1867
1868	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1869	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1870	if [[ $do_compile = true ]]
1871	then
1872
1873	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1874	# ZUSAMMENSETZEN
1875	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1876	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1877	then
1878	cpp_options="${cpp_options},-D__ibm=__ibm"
1879	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1880	then
1881	cpp_options="$cpp_options -D__nec"
1882	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1883	then
1884	cpp_options="$cpp_options -D__lc"
1885	else
1886	cpp_options="$cpp_options -D__$localhost"
1887	fi
1888
1889	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1890	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1891	then
1892	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1893	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1894	else
1895	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1896	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1897	fi
1898
1899	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1900	if [[ -n $package_list ]]
1901	then
1902	for package in $package_list
1903	do
1904	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1905	then
1906	if [[ $package != "dvrp_graphics+1PE" ]]
1907	then
1908	cpp_options="${cpp_options},-D__$package=__$package"
1909	else
1910	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1911	export use_seperate_pe_for_dvrp_output=true
1912	fi
1913	else
1914	if [[ $package != "dvrp_graphics+1PE" ]]
1915	then
1916	cpp_options="$cpp_options -D__$package"
1917	else
1918	cpp_options="$cpp_options -D__dvrp_graphics"
1919	export use_seperate_pe_for_dvrp_output=true
1920	fi
1921	fi
1922	done
1923	fi
1924
1925	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1926	if [[ -n $cpp_opts ]]
1927	then
1928	for popts in $cpp_opts
1929	do
1930	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1931	then
1932	cpp_options="${cpp_options},-D__$popts=__$popts"
1933	else
1934	cpp_options="$cpp_options -D__$popts"
1935	fi
1936	done
1937	fi
1938
1939	else
1940
1941
1942	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1943	if [[ $do_remote = false ]]
1944	then
1945	if [[ ! -f $executable ]]
1946	then
1947	printf "\n +++ executable file: $executable"
1948	printf "\n does not exist"
1949	locat=executable; exit
1950	fi
1951	fi
1952	fi
1953
1954
1955	# JOBMODUS FESTSTELLEN
1956	if [[ "$ENVIRONMENT" = BATCH ]]
1957	then
1958	jobmo=BATCH
1959	else
1960	jobmo=INTERACTIVE
1961	fi
1962
1963
1964	# no interactive runs on lctit
1965	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1966	then
1967	printf "\n +++ no interactive runs allowed on host \"$host\" "
1968	printf "\n please submit batch job using mrun option \"-b\" \n"
1969	locat=normal; exit
1970	fi
1971
1972
1973	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1974	# DURCH BENUTZER ANDERWEITIG VEREINBART
1975	if [[ "$compiler_name" = "" ]]
1976	then
1977
1978	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1979	locat=compiler_name; exit
1980
1981	fi
1982
1983
1984	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1985	[[ $localhost = necriam ]] && compiler_name=mpif90
1986
1987
1988
1989	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1990	kennung=$RANDOM
1991	if [[ "$tmp_user_catalog" = "" ]]
1992	then
1993	if [[ $localhost = ibmh ]]
1994	then
1995	tmp_user_catalog=$SCRATCH
1996	elif [[ $localhost = nech ]]
1997	then
1998	tmp_user_catalog=$WRKSHR
1999	else
2000	tmp_user_catalog=/tmp
2001	fi
2002	fi
2003	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2004
2005
2006	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2007	# BESTIMMEN
2008	if [[ "$tmp_data_catalog" = "" ]]
2009	then
2010	if [[ $localhost = nech ]]
2011	then
2012	tmp_data_catalog=$WRKSHR/mrun_restart_data
2013	else
2014	tmp_data_catalog=/tmp/mrun_restart_data
2015	fi
2016	fi
2017
2018
2019	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2020	# ERSETZEN
2021	if [[ $do_remote = false && $do_compile = true ]]
2022	then
2023	eval fopts=\"$fopts\"
2024	eval lopts=\"$lopts\"
2025	fi
2026
2027
2028
2029	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2030	fopts="$fopts $netcdf_inc $dvr_inc"
2031	lopts="$lopts $netcdf_lib $dvr_lib"
2032	ROPTS="$ropts"
2033	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2034	then
2035	XOPT="-X $numprocs"
2036	fi
2037
2038
2039
2040	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2041	# GRAMM BENOETIGT
2042	done=false
2043	while [[ $done = false ]]
2044	do
2045	cputime=$cpumax
2046	if (( $cputime == 0 ))
2047	then
2048	if [[ $do_batch = true ]]
2049	then
2050	printf "\n +++ cpu-time is undefined"
2051	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2052	printf "\n >>> "
2053	read cputime 1>/dev/null 2>&1
2054	else
2055	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2056	fi
2057	else
2058	done=true
2059	fi
2060	cpumax=$cputime
2061	done
2062
2063	(( minuten = cputime / 60 ))
2064	(( sekunden = cputime - minuten * 60 ))
2065
2066
2067	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2068	if [[ $do_batch = true ]]
2069	then
2070	done=false
2071	while [[ $done = false ]]
2072	do
2073	if (( memory == 0 ))
2074	then
2075	printf "\n +++ memory demand is undefined"
2076	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2077	printf "\n >>> "
2078	read memory 1>/dev/null 2>&1
2079	else
2080	done=true
2081	fi
2082	done
2083	fi
2084
2085
2086	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2087	if [[ $do_remote = true && -z $remote_username ]]
2088	then
2089	while [[ -z $remote_username ]]
2090	do
2091	printf "\n +++ username on remote host \"$host\" is undefined"
2092	printf "\n >>> Please type username:"
2093	printf "\n >>> "
2094	read remote_username
2095	done
2096	mc="$mc -u$remote_username"
2097	fi
2098
2099
2100	# set module load command and export for subjob
2101	if [[ "$modules" != "" ]]
2102	then
2103	if [[ $host = lctit ]]
2104	then
2105	export module_calls=". $modules"
2106	else
2107	export module_calls="module load ${modules};"
2108	fi
2109	fi
2110
2111	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2112	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2113	then
2114	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2115	then
2116	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2117	fi
2118	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2119	# then
2120	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2121	# echo "*** module_calls = $module_calls"
2122	# fi
2123	fi
2124
2125
2126	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2127	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2128	then
2129	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2130	then
2131	mpilib=mpt
2132	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2133	then
2134	mpilib=mvapich
2135	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2136	then
2137	mpilib=impi
2138	fi
2139	fi
2140
2141
2142
2143	###########################################################################
2144	# HEADER-AUSGABE
2145	###########################################################################
2146
2147
2148	calltime=$(date)
2149	printf "\n"
2150	# [[ $silent = false ]] && clear
2151	printf "#--------------------------------------------------------------# \n"
2152	printf "\| $version$calltime \| \n"
2153	printf "\| \| \n"
2154	spalte1="called on:"; spalte2=$localhost_realname
2155	printf "\| $spalte1$spalte2 \| \n"
2156	if [[ $local_compile = false ]]
2157	then
2158	if [[ $do_remote = true ]]
2159	then
2160	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2161	else
2162	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2163	fi
2164	else
2165	spalte1="compiling test only!"; spalte2=""
2166	fi
2167	printf "\| $spalte1$spalte2 \| \n"
2168	if [[ -n $numprocs ]]
2169	then
2170	spalte1="number of PEs:"; spalte2=$numprocs
2171	printf "\| $spalte1$spalte2 \| \n"
2172	fi
2173	if [[ -n $tasks_per_node ]]
2174	then
2175	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2176	printf "\| $spalte1$spalte2 \| \n"
2177	fi
2178	if [[ $maximum_parallel_io_streams != $numprocs ]]
2179	then
2180	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2181	printf "\| $spalte1$spalte2 \| \n"
2182	fi
2183	if [[ $use_openmp = true ]]
2184	then
2185	spalte1="threads per task:"; spalte2="$threads_per_task"
2186	printf "\| $spalte1$spalte2 \| \n"
2187	fi
2188	printf "\| \| \n"
2189	if [[ $do_compile = true ]]
2190	then
2191	if [[ "$mopts" != "" ]]
2192	then
2193	spalte1="make options:"; spalte2=$mopts
2194	printf "\| $spalte1$spalte2 \| \n"
2195	zeile=$(echo "$mopts" \| cut -c41-)
2196	while [[ "$zeile" != "" ]]
2197	do
2198	spalte1=""
2199	spalte2=$zeile
2200	printf "\| $spalte1$spalte2 \| \n"
2201	zeile=$(echo "$zeile" \| cut -c41-)
2202	done
2203	fi
2204
2205	spalte1="cpp directives:"; spalte2=$cpp_options
2206	printf "\| $spalte1$spalte2 \| \n"
2207	zeile=$(echo "$cpp_options" \| cut -c41-)
2208	while [[ "$zeile" != "" ]]
2209	do
2210	spalte1=""
2211	spalte2=$zeile
2212	printf "\| $spalte1$spalte2 \| \n"
2213	zeile=$(echo "$zeile" \| cut -c41-)
2214	done
2215
2216	spalte1="compiler options:"; spalte2="$fopts"
2217	printf "\| $spalte1$spalte2 \| \n"
2218	zeile=$(echo "$fopts" \| cut -c41-)
2219	while [[ "$zeile" != "" ]]
2220	do
2221	spalte1=""
2222	spalte2=$zeile
2223	printf "\| $spalte1$spalte2 \| \n"
2224	zeile=$(echo "$zeile" \| cut -c41-)
2225	done
2226
2227	spalte1="linker options:"; spalte2=$lopts
2228	printf "\| $spalte1$spalte2 \| \n"
2229	zeile=$(echo "$lopts" \| cut -c41-)
2230	while [[ "$zeile" != "" ]]
2231	do
2232	spalte1=""
2233	spalte2=$zeile
2234	printf "\| $spalte1$spalte2 \| \n"
2235	zeile=$(echo "$zeile" \| cut -c41-)
2236	done
2237
2238	spalte1="modules to be load:"; spalte2=$modules
2239	printf "\| $spalte1$spalte2 \| \n"
2240	zeile=$(echo "$modules" \| cut -c41-)
2241	while [[ "$zeile" != "" ]]
2242	do
2243	spalte1=""
2244	spalte2=$zeile
2245	printf "\| $spalte1$spalte2 \| \n"
2246	zeile=$(echo "$zeile" \| cut -c41-)
2247	done
2248
2249	spalte1="main program":; spalte2=$mainprog
2250	printf "\| $spalte1$spalte2 \| \n"
2251	else
2252	spalte1=executable:; spalte2=$executable
2253	printf "\| $spalte1$spalte2 \| \n"
2254	fi
2255	printf "\| \| \n"
2256	spalte1="base name of files":; spalte2=$fname
2257	printf "\| $spalte1$spalte2 \| \n"
2258	if [[ $fname != $afname ]]
2259	then
2260	spalte1="base name of input files":; spalte2=$afname
2261	printf "\| $spalte1$spalte2 \| \n"
2262	fi
2263	spalte1="INPUT control list":; spalte2=$input_list
2264	printf "\| $spalte1$spalte2 \| \n"
2265	spalte1="OUTPUT control list":; spalte2=$output_list
2266	printf "\| $spalte1$spalte2 \| \n"
2267
2268	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2269	then
2270	spalte1="memory demand / PE":; spalte2="$memory MB"
2271	printf "\| $spalte1$spalte2 \| \n"
2272	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2273	printf "\| $spalte1$spalte2 \| \n"
2274	fi
2275
2276	if [[ $do_compile = true ]]
2277	then
2278	printf "\| \| \n"
2279	printf "\| Files to be compiled: \| \n"
2280	zeile=$source_list
2281	while [[ "$zeile" != "" ]]
2282	do
2283	spalte3=$zeile
2284	printf "\| $spalte3 \| \n"
2285	zeile=$(echo "$zeile" \| cut -c61-)
2286	done
2287	fi
2288	printf "#--------------------------------------------------------------#"
2289
2290
2291
2292	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2293	if [[ $do_trace = true ]]
2294	then
2295	(( i = 0 ))
2296	while (( i < iin ))
2297	do
2298	(( i = i + 1 ))
2299	if (( i == 1 ))
2300	then
2301	printf "\n\n >>> INPUT-file assignments:\n"
2302	fi
2303	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2304	done
2305	(( i = 0 ))
2306	while (( i < iout ))
2307	do
2308	(( i = i + 1 ))
2309	if (( i == 1 ))
2310	then
2311	printf "\n\n >>> OUTPUT-file assignments:\n"
2312	fi
2313	printf "\n ${localout[$i]} : ${pathout[$i]}"
2314	done
2315	(( i = 0 ))
2316	while (( i < iic ))
2317	do
2318	(( i = i + 1 ))
2319	if (( i == 1 ))
2320	then
2321	printf "\n\n >>> INPUT-commands:\n"
2322	fi
2323	printf "\n ${in_command[$i]}"
2324	done
2325	(( i = 0 ))
2326	while (( i < ioc ))
2327	do
2328	(( i = i + 1 ))
2329	if (( i == 1 ))
2330	then
2331	printf "\n\n >>> OUTPUT-commands:\n"
2332	fi
2333	printf "\n ${out_command[$i]}"
2334	done
2335	fi
2336
2337
2338	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2339	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2340	then
2341	antwort=dummy
2342	printf "\n\n"
2343	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2344	do
2345	printf " >>> everything o.k. (y/n) ? "
2346	read antwort
2347	done
2348	if [[ $antwort = n \|\| $antwort = N ]]
2349	then
2350	locat=user_abort; (( iec = 0 )); exit
2351	fi
2352	if [[ $do_batch = true ]]
2353	then
2354	printf " >>> batch-job will be created and submitted"
2355	else
2356	if [[ $local_compile = false ]]
2357	then
2358	printf " >>> MRUN will now continue to execute on this machine"
2359	else
2360	printf " >>> a test compilation will now be carried out on this machine"
2361	fi
2362	fi
2363	fi
2364
2365	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2366
2367	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2368	check_depository="${working_directory}/trunk/UTIL"
2369	check_sources="${working_directory}/tmp_check_namelist_files"
2370	skip_check=false
2371
2372	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2373	if [[ ! -f $check_depository/check_namelist_files.tar \|\| ! -f $PALM_BIN/check_namelist_files.x ]]
2374	then
2375	skip_check=true
2376
2377	fi
2378
2379	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2380	if [[ $check_namelist_files == false \|\| $fromhost != $localhost \|\| $run_coupled_model == true \|\| $restart_run == true ]]
2381	then
2382	skip_check=true
2383	fi
2384	if [[ $skip_check == false ]]
2385	then
2386	if [[ $ocean_file_appendix == true ]]
2387	then
2388	d3par_string="d3o#"
2389	d3fpar_string="d3of"
2390	else
2391	d3par_string="d3#"
2392	d3fpar_string="d3f"
2393	fi
2394
2395	tmp_check=${working_directory}/tmp_check
2396
2397	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2398	line=""
2399	found=false
2400	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2401	while read line1
2402	do
2403	line="$line1"
2404	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2405	then
2406	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2407	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2408	found=true
2409	fi
2410	done < $tmp_check
2411
2412	if [[ $found = false ]]
2413	then
2414	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2415
2416	locat=check_namelist; exit
2417	fi
2418
2419	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2420	# NOT NECESSARILY REQUIRED
2421	line=""
2422	found=false
2423	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2424	while read line1
2425	do
2426	line="$line1"
2427	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2428	then
2429	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2430	found=true
2431	fi
2432	done < $tmp_check
2433
2434	if [[ $found = false ]]
2435	then
2436	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2437	fi
2438
2439	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2440	# NOT NECESSARILY REQUIRED
2441	line=""
2442	found=false
2443	grep "d3f" $config_file \| grep "TOPOGRAPHY_DATA" > $tmp_check
2444	while read line1
2445	do
2446	line="$line1"
2447	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2448	then
2449	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2450	found=true
2451	fi
2452	done < $tmp_check
2453
2454	if [[ $found = false ]]
2455	then
2456	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2457	fi
2458
2459	rm -rf ${working_directory}/tmp_check
2460
2461	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2462	for item in $input_list
2463	do
2464	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2465	then
2466	check_restart=1
2467	else
2468	check_restart=0
2469	fi
2470	done
2471
2472	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2473	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2474	then
2475	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2476	locat=check_namelist; exit
2477	fi
2478
2479	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2480	if [[ $check_restart == 1 ]]
2481	then
2482	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2483	then
2484	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2485	check_restart=0
2486	answer=dummy
2487	printf "\n\n"
2488
2489	if [[ $silent == false ]]
2490	then
2491	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2492	do
2493	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2494	read answer
2495	done
2496	if [[ $answer = a \|\| $answer = A ]]
2497	then
2498	printf "\n +++ Aborting...."
2499	locat=normal; exit
2500	fi
2501	fi
2502	else
2503	check_restart=1
2504	fi
2505	fi
2506
2507	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2508	mkdir $check_sources
2509	cd $check_sources
2510
2511	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2512	if [[ -d $working_directory/USER_CODE/$fname ]]
2513	then
2514	printf "\n\n *** copying files from $check_depository"
2515	cp $check_depository/check_namelist_files.tar ./
2516
2517	printf "\n\n *** untar of makefile and source files in $check_sources"
2518	tar -xf check_namelist_files.tar > /dev/null 2>&1
2519
2520	printf "\n\n *** adding user code."
2521	cp $working_directory/USER_CODE/$fname/* ./
2522	touch check_namelist_files.f90
2523
2524	# GET COMPILER OPTIONS AND PERFORM MAKE
2525	printf "\n\n *** compiling code if necessary...\n"
2526	copts_check="-cpp -D_parallel -D__check"
2527	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2528
2529	# GET MAKE OUTPUT
2530	if [[ $? != 0 ]]
2531	then
2532	printf "\n +++ error during make."
2533	answer=dummy
2534	printf "\n\n"
2535	if [[ $silent == false ]]
2536	then
2537	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2538	do
2539	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2540	read answer
2541	done
2542	if [[ $answer = a \|\| $answer = A ]]
2543	then
2544	printf "\n +++ Aborting..."
2545	rm -rf $check_sources
2546	locat=normal; exit
2547	else
2548	skip_check=true
2549	fi
2550	else
2551	skip_check=true
2552	fi
2553	fi
2554	else
2555	cp $PALM_BIN/check_namelist_files.x ./
2556	fi
2557
2558	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2559	if [[ $check_restart == 1 ]]
2560	then
2561	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2562	fi
2563
2564
2565	if [[ -f $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} && $skip_check == false ]]
2566	then
2567	printf "\n *** adding topography data"
2568	cp $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2569
2570	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2571	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2572	# WHICH REQUIRE SUFFICIENT MEMORY
2573	ulimit -s unlimited
2574	fi
2575
2576	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2577	cat > ENVPAR << %%END%%
2578	&envpar run_identifier = '$fname', host = '$host',
2579	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2580	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2581	maximum_cpu_time_allowed = ${cpumax}.,
2582	revision = '$global_revision',
2583	local_dvrserver_running = $local_dvrserver_running /
2584
2585	%%END%%
2586
2587	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2588	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2589	printf "\n +++ WARNING: check_namelist_files.x not found."
2590	answer=dummy
2591	printf "\n\n"
2592
2593	if [[ $silent == false ]]
2594	then
2595	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2596	do
2597	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2598	read answer
2599	done
2600	if [[ $answer = a \|\| $answer = A ]]
2601	then
2602	printf "\n +++ Aborting..."
2603	rm -rf $check_sources
2604	locat=normal; exit
2605	else
2606	printf "\n *** Skipping parameter file check."
2607
2608	fi
2609	fi
2610
2611	elif [[ $skip_check == false ]]
2612	then
2613	# STARTING THE PARAMETER FILE CHECK
2614	printf "\n\n *** starting parameter file check..."
2615
2616	# CHECKING THE P3D FILE
2617	printf "\n\n (1) checking $fname$p3d_suffix"
2618	echo "$numprocs 0" > VARIN
2619	errors=`./check_namelist_files.x < VARIN 2>&1`
2620
2621	check_error=false
2622	if [[ "$errors" == "" ]]
2623	then
2624	printf " --> o.k."
2625	else
2626	printf " --> failed."
2627	check_error=true
2628	printf "\n\n $errors"
2629	fi
2630
2631	# CHECKING THE PD3F FILE IF NECESSARY
2632	if [[ $check_restart == 1 && $check_error == false ]]
2633	then
2634	printf "\n\n (2) checking $fname$p3df_suffix"
2635
2636	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2637	found=false
2638	cat PARINF\|while read line
2639	do
2640	line=$(echo $line\|sed 's/ //g')
2641	if [[ $line == "&inipar" ]]
2642	then
2643	start_search=true
2644	fi
2645
2646	if [[ $start_search == true ]]
2647	then
2648	if [[ $line == "initializing_actions='read_restart_data'" ]]
2649	then
2650	found=true
2651	break
2652	fi
2653	fi
2654
2655	if [[ $line == "/" ]]
2656	then
2657	start_search=false
2658	fi
2659
2660	done
2661
2662	if [[ $found = false ]]
2663	then
2664	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2665	printf "\n in &inipar list in $fname$p3df_suffix."
2666	rm -rf $check_sources
2667	locat=check_namelist; exit
2668	fi
2669
2670	echo "$numprocs 1" > VARIN
2671	errors=`./check_namelist_files.x < VARIN 2>&1`
2672
2673	if [[ "$errors" == "" ]]
2674	then
2675	printf " --> o.k."
2676	else
2677	printf " --> failed."
2678	check_error=true
2679	printf "\n\n $errors"
2680	fi
2681	fi
2682
2683	# REPORT ERRORS AND CONTINUE/EXIT
2684	if [[ $check_error == true ]]
2685	then
2686	printf "\n +++ errors found in the parameter file!\n"
2687	answer=dummy
2688	printf "\n\n"
2689
2690	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2691	do
2692	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2693	read answer
2694	done
2695
2696	if [[ $answer = a \|\| $answer = A ]]
2697	then
2698	printf "\n +++ Aborting..."
2699	rm -rf $check_sources
2700	locat=normal; exit
2701	fi
2702	else
2703	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2704	fi
2705	rm -rf $check_sources
2706	fi
2707	else
2708	printf "\n\n +++ skipping parameter file check\n"
2709	fi
2710
2711	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2712	rm -rf $check_sources
2713	cd $working_directory
2714
2715	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2716	# CHENDE AKTIONEN DURCHGEFUEHRT
2717	if [[ $do_batch = false ]]
2718	then
2719
2720
2721	# TEMPORAEREN KATALOG ERZEUGEN
2722	mkdir -p $TEMPDIR
2723	chmod go+rx $TEMPDIR
2724	tmpcreate=true
2725
2726	# set striping on lustre file system
2727	# if [[ $localhost = lcsgih ]]
2728	# then
2729	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2730	# lfs getstripe $TEMPDIR
2731	# fi
2732
2733
2734	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2735	# TEMPORAERES VERZEICHNIS KOPIEREN
2736	if [[ $do_compile = true ]]
2737	then
2738
2739	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2740	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2741	if [[ $localhost = nech ]]
2742	then
2743	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2744	if mkdir -p $TEMPDIR_COMPILE
2745	then
2746	printf "\n *** \"$TEMPDIR_COMPILE\" "
2747	printf "\n is generated as temporary directory for cross compiling\n"
2748	else
2749	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2750	printf "\n needed for cross compilation failed"
2751	locat=compile
2752	exit
2753	fi
2754	else
2755	TEMPDIR_COMPILE=$TEMPDIR
2756	fi
2757
2758
2759	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2760	line=""
2761	grep "%depository_path" $config_file > tmp_mrun
2762	while read line
2763	do
2764	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2765	then
2766	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2767	then
2768	global_depository_path=`echo $line \| cut -d" " -s -f2`
2769	fi
2770	fi
2771	done < tmp_mrun
2772
2773	line=""
2774	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2775	while read line
2776	do
2777	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2778	then
2779	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2780	then
2781	local_depository_path=`echo $line \| cut -d" " -s -f2`
2782	fi
2783	fi
2784	done < tmp_mrun
2785
2786	if [[ "$local_depository_path" = "" ]]
2787	then
2788	if [[ "$global_depository_path" != "" ]]
2789	then
2790	local_depository_path=$global_depository_path
2791	else
2792	printf "\n\n +++ no depository path found in configuration file"
2793	printf "\n for local host \"$localhost\" "
2794	printf "\n please set \"\%depository_path\" in configuration file\n"
2795	locat=config_file; exit
2796	fi
2797	fi
2798	eval local_depository_path=$local_depository_path
2799	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2800	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2801
2802
2803	basename=`print $mainprog \| cut -f1 -d"."`
2804	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2805	if [[ ! -f $make_depository ]]
2806	then
2807	printf "\n"
2808	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2809	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2810	else
2811	cp $make_depository $TEMPDIR_COMPILE
2812	cd $TEMPDIR_COMPILE
2813	tar -xf $make_depository > /dev/null 2>&1
2814	cd - > /dev/null
2815	fi
2816
2817	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2818
2819	else
2820
2821	cp $executable ${TEMPDIR}/a.out
2822
2823	fi
2824
2825
2826	# WECHSEL IN TEMPORAEREN KATALOG
2827	cd $TEMPDIR
2828	printf "\n *** changed to temporary directory: $TEMPDIR"
2829
2830
2831	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2832	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2833	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2834	# ERMITTELN
2835	(( i = 0 ))
2836	while (( i < iout ))
2837	do
2838	(( i = i + 1 ))
2839	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2840	then
2841	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2842	else
2843	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2844	fi
2845	done
2846
2847
2848	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2849	if [[ $do_compile = true ]]
2850	then
2851
2852
2853	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2854	printf "\n\n\n *** compilation starts \n$striche\n"
2855	printf " *** compilation with make using following options:\n"
2856	printf " make depository: $make_depository"
2857	if [[ "$mopts" != "" ]]
2858	then
2859	printf " make options: $mopts\n"
2860	fi
2861	printf " compilername: $compiler_name\n"
2862	printf " compiler options: $fopts\n"
2863	printf " preprocessor directives: $cpp_options \n"
2864	printf " linker options: $lopts \n"
2865	if [[ "$modules" != "" ]]
2866	then
2867	printf " modules to be load: $modules \n"
2868	fi
2869	printf " source code files: $source_list \n"
2870
2871	if [[ $localhost = nech ]]
2872	then
2873	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2874	cp $TEMPDIR_COMPILE/a.out .
2875	[[ $? != 0 ]] && compile_error=true
2876	rm -rf $TEMPDIR_COMPILE
2877	elif [[ $localhost = ibmh ]]
2878	then
2879	printf " compiler is called via ssh on \"plogin1\" \n"
2880	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2881	[[ ! -f a.out ]] && compile_error=true
2882	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2883	elif [[ $localhost = lcsgib ]]
2884	then
2885	printf " compiler is called via ssh on \"bicegate0\" \n"
2886	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2887	[[ ! -f a.out ]] && compile_error=true
2888	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2889	elif [[ $localhost = lcsgih ]]
2890	then
2891	printf " compiler is called via ssh on \"hicegate0\" \n"
2892	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2893	[[ ! -f a.out ]] && compile_error=true
2894	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2895	elif [[ $localhost = lcflow ]]
2896	then
2897	printf " compiler is called via ssh on \"flow\" \n"
2898	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2899	[[ ! -f a.out ]] && compile_error=true
2900	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2901	else
2902	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2903	[[ "$module_calls" != "" ]] && eval $module_calls
2904	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2905
2906	fi
2907
2908	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2909	then
2910	printf "\n +++ error occured while compiling or linking"
2911	locat=compile
2912
2913	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2914	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2915	# then
2916	exit
2917	# else
2918	# locat=normal
2919	# fi
2920	else
2921	printf "$striche\n *** compilation finished \n"
2922	fi
2923	fi
2924
2925
2926	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2927	if [[ $local_compile = true ]]
2928	then
2929	cd $HOME
2930	rm -rf $TEMPDIR
2931	locat=local_compile; exit
2932	fi
2933
2934
2935	# BEREITSTELLEN DER INPUT-DATEIEN
2936	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2937	(( i = 0 ))
2938	while (( i < iin ))
2939	do
2940	(( i = i + 1 ))
2941	if (( i == 1 ))
2942	then
2943	printf "\n\n *** providing INPUT-files:\n$striche"
2944	fi
2945
2946
2947	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2948	if [[ "${transin[$i]}" = unavailable ]]
2949	then
2950	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2951	then
2952	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2953	printf "\n is not available!"
2954	else
2955	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2956	printf "\n is not available!"
2957	fi
2958	continue
2959	fi
2960
2961	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2962	files_for_pes=false; datentyp=file
2963	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2964	then
2965	files_for_pes=true; datentyp=directory
2966	actionin[$i]=""
2967	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2968	then
2969	actionin[$i]=""
2970	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2971	then
2972	files_for_pes=true; datentyp=directory
2973	actionin[$i]="ar"
2974	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2975	then
2976	actionin[$i]="ar"
2977	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2978	then
2979	files_for_pes=true; datentyp=directory
2980	actionin[$i]="fl"
2981	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2982	then
2983	actionin[$i]="fl"
2984	fi
2985
2986	if [[ $files_for_pes = true ]]
2987	then
2988	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2989	else
2990	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2991	fi
2992
2993	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2994	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2995	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2996	# SERVER ZU HOLEN
2997	if [[ "${actionin[$i]}" = fl ]]
2998	then
2999	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3000	if [[ $files_for_pes = false ]]
3001	then
3002	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3003	then
3004	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3005	got_tmp[$i]=true
3006	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3007	then
3008	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3009	printf "\n *** trying to use backup copy in \"$WORK\" "
3010	cp $WORK/${frelin[$i]} ${localin[$i]}
3011	else
3012	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3013	printf "\n or \"$tmp_data_catalog\" does not exist!"
3014	printf "\n *** trying to get copy from archive"
3015	actionin[$i]=ar
3016	fi
3017	else
3018	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3019	then
3020	mkdir ${localin[$i]}
3021	cd $tmp_data_catalog/${frelin[$i]}
3022	for file in $(ls *)
3023	do
3024	ln $file $TEMPDIR/${localin[$i]}
3025	done
3026	cd $TEMPDIR
3027	got_tmp[$i]=true
3028	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3029	then
3030	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3031	printf "\n *** trying to use backup copy in \"$WORK\" "
3032	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3033	else
3034	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3035	printf "\n or \"$tmp_data_catalog\" does not exist!"
3036	printf "\n *** trying to get copy from archive"
3037	actionin[$i]=ar
3038	fi
3039	fi
3040	fi
3041
3042
3043	# DATEI LIEGT AUF ARCHIV-SERVER
3044	if [[ "${actionin[$i]}" = ar ]]
3045	then
3046
3047	if [[ $files_for_pes = false ]]
3048	then
3049	printf "\n file will be restored from archive-system ($archive_system)!"
3050	else
3051	printf "\n directory will be restored from archive-system ($archive_system)!"
3052	fi
3053
3054	file_restored=false
3055
3056	if [[ $archive_system = asterix ]]
3057	then
3058	do_stagein=true
3059	(( stagein_anz = 0 ))
3060	while [[ $do_stagein = true ]]
3061	do
3062	if [[ $files_for_pes = false ]]
3063	then
3064	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3065	else
3066	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3067	fi
3068	cat STAGEIN_OUTPUT
3069	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3070	then
3071	file_restored=true
3072	do_stagein=false
3073	else
3074	(( stagein_anz = stagein_anz + 1 ))
3075	if (( stagein_anz == 10 ))
3076	then
3077	printf "\n +++ stagein stoped after 10 tries"
3078	locat=stage
3079	exit
3080	fi
3081	printf "\n +++ restoring from archive failed, trying again:"
3082	sleep 900
3083	fi
3084	done
3085	elif [[ $archive_system = DMF ]]
3086	then
3087	if [[ $files_for_pes = false ]]
3088	then
3089	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3090	locat=DMF
3091	exit
3092	else
3093	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3094	cp -r $ARCHIVE/${frelin[$i]} $PWD
3095	file_restored=true
3096	fi
3097	elif [[ $archive_system = tivoli ]]
3098	then
3099	if [[ $files_for_pes = false ]]
3100	then
3101	if [[ $localhost = lcsgih ]]
3102	then
3103	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3104	else
3105	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3106	fi
3107	else
3108	(( inode = 0 ))
3109	while (( inode < nodes ))
3110	do
3111	if [[ $localhost = lcsgih ]]
3112	then
3113	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3114	else
3115	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3116	fi
3117	(( inode = inode + 1 ))
3118	done
3119	fi
3120	file_restored=true
3121	elif [[ $archive_system = ut ]]
3122	then
3123	if [[ $files_for_pes = false ]]
3124	then
3125	cp $UT/${frelin[$i]} .
3126	else
3127	(( inode = 0 ))
3128	while (( inode < nodes ))
3129	do
3130	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3131	(( inode = inode + 1 ))
3132	done
3133	fi
3134	file_restored=true
3135	else
3136	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3137	locat=rearchive
3138	exit
3139	fi
3140
3141	if [[ $file_restored = true ]]
3142	then
3143
3144	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3145	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3146	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3147	if [[ $files_for_pes = false ]]
3148	then
3149	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3150	else
3151	mkdir $tmp_data_catalog/${frelin[$i]}
3152	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3153	fi
3154	got_tmp[$i]=true
3155
3156	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3157	mv ${frelin[$i]} ${localin[$i]}
3158
3159	fi
3160	fi
3161
3162
3163	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3164	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3165	then
3166
3167	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3168	then
3169
3170	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3171	printf "\n file will be provided for $numprocs processors"
3172	mkdir ${localin[$i]}
3173	ival=$numprocs
3174	(( ii = 0 ))
3175	while (( ii <= ival-1 ))
3176	do
3177	if (( ii < 10 ))
3178	then
3179	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3180	elif (( ii < 100 ))
3181	then
3182	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3183	elif (( ii < 1000 ))
3184	then
3185	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3186	else
3187	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3188	fi
3189	(( ii = ii + 1 ))
3190	done
3191
3192	else
3193
3194	if [[ $files_for_pes = true ]]
3195	then
3196
3197	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3198	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3199	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3200	# PER MOVE UMBENANNT WERDEN
3201	printf "\n providing $numprocs files for the respective processors"
3202	mkdir ${localin[$i]}
3203	if [[ $link_local_input = true ]]
3204	then
3205	printf " using ln -f\n"
3206	cd ${absnamein[$i]}
3207	for file in $(ls *)
3208	do
3209	ln -f $file ${localin[$i]}
3210	done
3211	cd $TEMPDIR
3212	fi
3213	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3214	if [[ ! -f "${localin[$i]}/_0000" ]]
3215	then
3216	if [[ $link_local_input = true ]]
3217	then
3218	printf " ln failed for .../_0000, using cp...\n"
3219	fi
3220	cp -r ${absnamein[$i]}/* ${localin[$i]}
3221	fi
3222
3223	else
3224	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3225	if [[ $link_local_input = true ]]
3226	then
3227	printf " using ln -f\n"
3228	ln -f ${absnamein[$i]} ${localin[$i]}
3229	fi
3230	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3231	if [[ ! -f "${localin[$i]}" ]]
3232	then
3233	if [[ $link_local_input = true ]]
3234	then
3235	printf " ln failed, using cp...\n"
3236	fi
3237	cp ${absnamein[$i]} ${localin[$i]}
3238	fi
3239	fi
3240	fi
3241	fi
3242
3243	done
3244	if (( i != 0 ))
3245	then
3246	printf "\n$striche\n *** all INPUT-files provided \n"
3247	fi
3248
3249
3250	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3251	(( i = 0 ))
3252	while (( i < iic ))
3253	do
3254	(( i = i + 1 ))
3255	if (( i == 1 ))
3256	then
3257	printf "\n\n *** execution of INPUT-commands:\n$striche"
3258	fi
3259	printf "\n >>> ${in_command[$i]}"
3260	eval ${in_command[$i]}
3261	if (( i == iic ))
3262	then
3263	printf "\n$striche\n"
3264	fi
3265	done
3266
3267
3268	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3269	cpurest=${cpumax}.
3270
3271
3272	# START DVR STREAMING SERVER
3273	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3274	then
3275	if [[ "$dvr_server" != "" ]]
3276	then
3277
3278	printf "\n\n *** preparing the dvr streaming server configuration file"
3279
3280	# Check, if a dvr server is already running
3281	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3282	if [[ "$running_dvrserver_id" != "" ]]
3283	then
3284
3285	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3286	printf "\n This server is used instead starting a new one!"
3287	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3288
3289	else
3290
3291	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3292	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3293	then
3294	cp ${PALM_BIN}/.dvrserver.config .
3295
3296	# Entering the BASEDIR, UID and GID into this file
3297	user_id=`id -u`
3298	group_id=`id -g`
3299	# & is needed as seperator, because TEMPDIR contains /
3300	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3301	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3302	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3303	mv .dvrserver.3 .dvrserver.config
3304	rm .dvrserver.1 .dvrserver.2
3305
3306	# Start dvr server in background, get his id and print on terminal
3307	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3308	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3309	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3310	local_dvrserver_running=.TRUE.
3311	else
3312	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3313	printf "\n \"$PALM_BIN\" "
3314	locat=dvr
3315	exit
3316	fi
3317
3318	fi
3319
3320	else
3321	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3322	fi
3323	fi
3324
3325
3326	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3327	# LESEN VON PALM)
3328	cat > ENVPAR << %%END%%
3329	&envpar run_identifier = '$fname', host = '$localhost',
3330	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3331	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3332	maximum_cpu_time_allowed = ${cpumax}.,
3333	revision = '$global_revision',
3334	local_dvrserver_running = $local_dvrserver_running /
3335
3336	%%END%%
3337
3338
3339	# PROGRAMMSTART
3340	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3341	PATH=$PATH:$TEMPDIR
3342
3343	# MPI debug option (argument checking, slows down execution due to increased latency)
3344	if [[ "$mpi_debug" = true ]]
3345	then
3346	export MPI_CHECK_ARGS=1
3347	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3348	fi
3349
3350	if [[ "$totalview" = true ]]
3351	then
3352	printf "\n *** totalview debugger will be used"
3353	tv_opt="-tv"
3354	else
3355	tv_opt=""
3356	fi
3357
3358	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3359	then
3360	if [[ "$ENVIRONMENT" = BATCH ]]
3361	then
3362	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3363	then
3364	printf "\n +++ debug is allowed in interactive mode only"
3365	locat=debug
3366	exit
3367	fi
3368	fi
3369	if [[ $localhost = decalpha ]]
3370	then
3371	dxladebug a.out
3372	elif [[ $localhost = ibmh ]]
3373	then
3374
3375	# SETUP THE IBM MPI ENVIRONMENT
3376	export MP_SHARED_MEMORY=yes
3377	export AIXTHREADS_SCOPE=S
3378	export OMP_NUM_THREADS=$threads_per_task
3379	export AUTHSTATE=files
3380	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3381
3382	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3383	export MP_ADAPTER_USE=shared
3384	export MP_CPU_USE=multiple
3385	export MP_TIMEOUT=1200
3386
3387	unset MP_TASK_AFFINITY
3388
3389	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3390	#(( ii = 1 ))
3391	#while (( ii <= $numprocs ))
3392	#do
3393	# echo $localhost_realname >> hostfile
3394	# (( ii = ii + 1 ))
3395	#done
3396	#export MP_HOSTFILE=hostfile
3397
3398	if [[ "$LOADLBATCH" = yes ]]
3399	then
3400	totalview poe a.out $ROPTS
3401	else
3402	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3403	export TVDSVRLAUNCHCMD=ssh
3404	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3405	fi
3406	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3407	then
3408	# CURRENTLY NO DEBUGGER ON LCSGI
3409	if [[ $run_coupled_model = true ]]
3410	then
3411	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3412	locat=debug
3413	exit
3414	else
3415	echo "no_coupling" > runfile_atmos
3416	fi
3417	(( ii = $numprocs / $threads_per_task ))
3418	export OMP_NUM_THREADS=$threads_per_task
3419	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3420	if [[ $threads_per_task != 1 ]]
3421	then
3422	printf "\n threads per task: $threads_per_task"
3423	fi
3424	printf "\n\n"
3425	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3426	then
3427	# export MPI_LAUNCH_TIMEOUT=360
3428	if [[ "$totalview" = true ]]
3429	then
3430	printf "\n running totalview debugger"
3431	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3432	else
3433	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3434	fi
3435	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3436	then
3437	# ulimit -s 300000 # A too large stack size causes problems
3438	# export MV2_NUM_PORTS=2
3439	# export MV2_CPU_MAPPING=0:1:2:3
3440	if [[ "$totalview" = true ]]
3441	then
3442	printf "\n running totalview debugger"
3443	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3444	else
3445	mpiexec ./a.out $ROPTS < runfile_atmos
3446	fi
3447	fi
3448	else
3449	printf "\n +++ no debug available on \"$localhost\" "
3450	printf "\n or not implemented in mrun so far"
3451	locat=debug
3452	exit
3453	fi
3454
3455	# end debug mode
3456	else
3457
3458	# normal execution
3459	if [[ -n $numprocs ]]
3460	then
3461	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3462	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3463	then
3464	# SETUP THE IBM MPI ENVIRONMENT
3465	if [[ $host != ibmh && $host != ibmkisti ]]
3466	then
3467	export MP_SHARED_MEMORY=yes
3468	export AIXTHREAD_SCOPE=S
3469	export OMP_NUM_THREADS=$threads_per_task
3470	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3471	export AUTHSTATE=files
3472	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3473	# export MP_PRINTENV=yes
3474
3475	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3476	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3477	export MP_WAIT_MODE=poll
3478	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3479	fi
3480
3481	if [[ $host = ibmkisti ]]
3482	then
3483	export LANG=en_US
3484	export MP_SHARED_MEMORY=yes
3485	if [[ $threads_per_task = 1 ]]
3486	then
3487	export MP_SINGLE_THREAD=yes
3488	export MEMORY_AFFINITY=MCM
3489	else
3490	export OMP_NUM_THREADS=$threads_per_task
3491	fi
3492	fi
3493
3494	if [[ "$LOADLBATCH" = yes ]]
3495	then
3496	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3497	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3498	then
3499	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3500	else
3501	if [[ $run_coupled_model = false ]]
3502	then
3503	if [[ "$ocean_file_appendix" = true ]]
3504	then
3505	echo "precursor_ocean" > runfile_atmos
3506	else
3507	echo "precursor_atmos" > runfile_atmos
3508	fi
3509	else
3510	(( iia = $numprocs_atmos / $threads_per_task ))
3511	(( iio = $numprocs_ocean / $threads_per_task ))
3512	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3513	printf "\n using $coupled_mode coupling"
3514	printf "\n\n"
3515	echo "coupled_run $iia $iio" > runfile_atmos
3516	fi
3517	poe ./a.out $ROPTS < runfile_atmos
3518	fi
3519	else
3520	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3521	then
3522	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3523	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3524	then
3525	if [[ -f $hostfile ]]
3526	then
3527	cp $hostfile hostfile
3528	else
3529	(( ii = 1 ))
3530	while (( ii <= $numprocs ))
3531	do
3532	echo $localhost_realname >> hostfile
3533	(( ii = ii + 1 ))
3534	done
3535	fi
3536	export MP_HOSTFILE=hostfile
3537	if [[ $run_coupled_model = false ]]
3538	then
3539	if [[ "$ocean_file_appendix" = true ]]
3540	then
3541	echo "precursor_ocean" > runfile_atmos
3542	else
3543	echo "precursor_atmos" > runfile_atmos
3544	fi
3545	else
3546	(( iia = $numprocs_atmos / $threads_per_task ))
3547	(( iio = $numprocs_ocean / $threads_per_task ))
3548	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3549	printf "\n using $coupled_mode coupling"
3550	printf "\n\n"
3551	echo "coupled_run $iia $iio" > runfile_atmos
3552	fi
3553	if [[ $localhost = ibmy ]]
3554	then
3555	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3556	else
3557	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3558	fi
3559
3560	else
3561	if [[ "$host_file" = "" ]]
3562	then
3563	printf "\n +++ no hostfile given in configuration file"
3564	locat=config_file
3565	exit
3566	else
3567	eval host_file=$host_file
3568	fi
3569	export MP_HOSTFILE=$host_file
3570	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3571	fi
3572	fi
3573	elif [[ $host = nech \|\| $host = necriam ]]
3574	then
3575	(( ii = nodes ))
3576	if [[ $ii = 1 ]]
3577	then
3578	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3579	export MPIPROGINF=YES
3580	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3581	echo "*** execution on single node with mpirun"
3582	mpirun -np $numprocs ./a.out $ROPTS
3583	else
3584	(( i = 0 ))
3585	while (( i < ii ))
3586	do
3587	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3588	(( i = i + 1 ))
3589	done
3590
3591	echo "#!/bin/sh" > mpi_exec_shell
3592	echo " " >> mpi_exec_shell
3593	echo "set -u" >> mpi_exec_shell
3594	echo "F_ERRCNT=0" >> mpi_exec_shell
3595	echo "MPIPROGINV=YES" >> mpi_exec_shell
3596	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3597	echo "cpurest=$cpurest" >> mpi_exec_shell
3598	echo "fname=$fname" >> mpi_exec_shell
3599	echo "localhost=$localhost" >> mpi_exec_shell
3600	echo "return_addres=$return_addres" >> mpi_exec_shell
3601	echo "return_username=$return_username" >> mpi_exec_shell
3602	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3603	echo "write_binary=$write_binary" >> mpi_exec_shell
3604	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3605	echo " " >> mpi_exec_shell
3606	echo "export F_ERRCNT" >> mpi_exec_shell
3607	echo "export MPIPROGINV" >> mpi_exec_shell
3608	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3609	echo "export cpurest" >> mpi_exec_shell
3610	echo "export fname" >> mpi_exec_shell
3611	echo "export localhost" >> mpi_exec_shell
3612	echo "export return_addres" >> mpi_exec_shell
3613	echo "export return_username" >> mpi_exec_shell
3614	echo "export tasks_per_node" >> mpi_exec_shell
3615	echo "export write_binary" >> mpi_exec_shell
3616	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3617	echo " " >> mpi_exec_shell
3618	echo "exec ./a.out" >> mpi_exec_shell
3619
3620	chmod u+x mpi_exec_shell
3621	export MPIPROGINF=YES
3622	mpirun -f multinode_config &
3623	wait
3624
3625	fi
3626	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3627	then
3628
3629	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3630	# DOES NOT EXIST
3631	if [[ $host != lcsgih && $host != lcsgib ]]
3632	then
3633	if [[ -f $hostfile ]]
3634	then
3635	cp $hostfile hostfile
3636	(( ii = $numprocs / $threads_per_task ))
3637	else
3638	(( ii = 1 ))
3639	while (( ii <= $numprocs / $threads_per_task ))
3640	do
3641	echo $localhost_realname >> hostfile
3642	(( ii = ii + 1 ))
3643	done
3644	fi
3645	eval zeile=\"`head -n $ii hostfile`\"
3646	printf "\n *** running on: $zeile"
3647	fi
3648
3649	(( ii = $numprocs / $threads_per_task ))
3650	export OMP_NUM_THREADS=$threads_per_task
3651	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3652	if [[ $threads_per_task != 1 ]]
3653	then
3654	# increase stack size to unlimited, because large runs
3655	# may abort otherwise
3656	ulimit -Ss unlimited
3657	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3658	fi
3659	if [[ $run_coupled_model = false ]]
3660	then
3661	if [[ "$ocean_file_appendix" = true ]]
3662	then
3663	echo "precursor_ocean" > runfile_atmos
3664	else
3665	echo "precursor_atmos" > runfile_atmos
3666	fi
3667	printf "\n\n"
3668	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3669	then
3670	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3671	then
3672	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3673	# export MPI_DSM_DISTRIBUTE=1
3674	# MPI_DSM_CPULIST: pin MPI processes to cores
3675	if [[ $use_openmp = false ]]
3676	then
3677	if [[ "$sgi_feature" = ice2 ]]
3678	then
3679	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3680	else
3681	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3682	fi
3683	else
3684	unset MPI_DSM_CPULIST
3685	fi
3686	# MPI_IB_RAILS: use both IB rails on ICE2
3687	export MPI_BUFS_PER_HOST=512
3688	export MPI_IB_RAILS=2
3689	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3690	export MPI_CONNECTIONS_THRESHOLD=8192
3691	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3692	export MPI_TYPE_DEPTH=20
3693	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3694	export MPI_GROUP_MAX=64
3695	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3696	if [[ $use_openmp = true ]]
3697	then
3698	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3699	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3700	else
3701	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3702	fi
3703
3704	# next is test for openmp usage
3705	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3706	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3707	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3708	then
3709	export MV2_NUM_PORTS=2
3710	# The default setting of MV2_CPU_MAPPING gives best results
3711	# export MV2_ENABLE_AFFINITY=1
3712	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3713	# if [[ "$sgi_feature" = ice2 ]]
3714	# then
3715	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3716	# else
3717	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3718	# fi
3719	if [[ $use_openmp = true ]]
3720	then
3721	unset MV2_CPU_MAPPING
3722	export MV2_ENABLE_AFFINITY=0
3723	fi
3724	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3725	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3726	if [[ $use_openmp = true ]]
3727	then
3728	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3729	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3730	else
3731	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3732	fi
3733	elif [[ "$mpilib" = impi ]]
3734	then
3735	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3736	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3737	fi
3738	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3739	then
3740	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3741	elif [[ $host = lcflow ]]
3742	then
3743	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3744	else
3745	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3746	fi
3747	else
3748
3749	# currently there is no full MPI-2 support on ICE and XT4
3750	(( iia = $numprocs_atmos / $threads_per_task ))
3751	(( iio = $numprocs_ocean / $threads_per_task ))
3752	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3753	printf "\n using $coupled_mode coupling"
3754	printf "\n\n"
3755
3756	if [[ $coupled_mode = "mpi2" ]]
3757	then
3758	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3759	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3760	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3761	then
3762
3763	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3764	then
3765	# export MPI_LAUNCH_TIMEOUT=360
3766	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3767	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3768	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3769	then
3770	# ulimit -s 300000 # A too large stack size causes problems
3771	# export MV2_NUM_PORTS=2
3772	# export MV2_CPU_MAPPING=0:1:2:3
3773	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3774	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3775	fi
3776
3777	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3778	then
3779
3780	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3781	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3782
3783	else
3784	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3785	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3786	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3787	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3788	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3789	fi
3790	wait
3791
3792	else
3793
3794	echo "coupled_run $iia $iio" > runfile_atmos
3795	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3796	then
3797
3798	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3799	then
3800	# export MPI_LAUNCH_TIMEOUT=360
3801	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3802	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3803	then
3804	# ulimit -s 300000 # A too large stack size causes problems
3805	# export MV2_NUM_PORTS=2
3806	# export MV2_CPU_MAPPING=0:1:2:3
3807	mpiexec ./a.out $ROPTS < runfile_atmos
3808	fi
3809
3810	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3811	then
3812
3813	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3814
3815	elif [[ $host = lck \|\| $host = lckordi ]]
3816	then
3817	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3818	fi
3819	wait
3820	fi
3821
3822	fi
3823	elif [[ $host = decalpha ]]
3824	then
3825	dmpirun -np $numprocs a.out $ROPTS
3826	elif [[ $host = lckyoto ]]
3827	then
3828	set -xv
3829	export P4_RSHCOMMAND=plesh
3830	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3831	if [[ "$ENVIRONMENT" = BATCH ]]
3832	then
3833	if [[ "$cond2" = fujitsu ]]
3834	then
3835	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3836	elif [[ "cond2" = pgi ]]
3837	then
3838	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3839	else
3840	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3841	fi
3842	else
3843	if [[ "$cond2" = "" ]]
3844	then
3845	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3846	else
3847	mpirun -np $numprocs ./a.out $ROPTS
3848	fi
3849	fi
3850	set +xv
3851	elif [[ $host = lctit ]]
3852	then
3853	export OMP_NUM_THREADS=$threads_per_task
3854	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3855	if [[ "$threads_per_task" != 1 ]]
3856	then
3857	export MV2_ENABLE_AFFINITY=0
3858	fi
3859	echo "----- PBS_NODEFILE content:"
3860	cat $PBS_NODEFILE
3861	echo "-----"
3862	(( ii = $numprocs / $threads_per_task ))
3863	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3864	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3865	else
3866	mpprun -n $numprocs a.out $ROPTS
3867	fi
3868	[[ $? != 0 ]] && execution_error=true
3869
3870
3871	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3872	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3873	then
3874	apprentice
3875	fi
3876	else
3877	a.out $ROPTS
3878	fi
3879	fi
3880	if [[ $? != 0 \|\| $execution_error = true ]]
3881	then
3882
3883	# ABBRUCH BEI LAUFZEITFEHLER
3884	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3885	printf "\n +++ runtime error occured"
3886	locat=execution
3887	exit
3888	else
3889	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3890	printf "\n$striche\n *** execution finished \n"
3891
3892	# Stop the dvr streaming server and process the dvr output in order
3893	# to create dvrs- and html-files containing all streams
3894	if [[ "$dvrserver_id" != "" ]]
3895	then
3896	kill $dvrserver_id
3897	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3898
3899	# If there is a directory, data have been output by the
3900	# streaming server. Otherwise, user has chosen dvrp_output=local
3901	if [[ -d DATA_DVR ]]
3902	then
3903
3904	# Add the current dvr configuration file to the dvr output
3905	# directory
3906	cp .dvrserver.config DATA_DVR
3907
3908	# Process the dvr output (option -s for also generating
3909	# sequence mode data)
3910	process_dvr_output -d DATA_DVR -f $fname -s
3911
3912	else
3913
3914	# Process the local output
3915	process_dvr_output -l -d DATA_DVR -f $fname
3916
3917	fi
3918
3919	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3920	then
3921
3922	# Process dvr output generated in local mode (dvrp_output=local)
3923	process_dvr_output -l -d DATA_DVR -f $fname
3924
3925	fi
3926	fi
3927
3928
3929
3930	# Call of combine_plot_fields in order to merge single files written
3931	# by each PE into one file.
3932	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3933	then
3934	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3935	printf "\n 2d- and/or 3d-data may be incomplete!"
3936	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3937	else
3938	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3939	combine_plot_fields${block}.x
3940	fi
3941
3942
3943
3944	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3945	(( i = 0 ))
3946	while (( i < ioc ))
3947	do
3948	(( i = i + 1 ))
3949	if (( i == 1 ))
3950	then
3951	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3952	fi
3953	printf "\n >>> ${out_command[$i]}"
3954	eval ${out_command[$i]}
3955	if (( i == ioc ))
3956	then
3957	printf "\n$striche\n"
3958	fi
3959	done
3960
3961
3962	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3963	if [[ $do_trace = true ]]
3964	then
3965	printf "\n\n"
3966	ls -al
3967	fi
3968
3969
3970
3971	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3972	(( i = 0 ))
3973	while (( i < iout ))
3974	do
3975	(( i = i + 1 ))
3976	if (( i == 1 ))
3977	then
3978	printf "\n\n *** saving OUTPUT-files:\n$striche"
3979	fi
3980
3981	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3982	files_for_pes=false; filetyp=file
3983	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3984	then
3985	files_for_pes=true; filetyp=directory
3986	actionout[$i]=""
3987	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3988	then
3989	actionout[$i]=""
3990	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3991	then
3992	files_for_pes=true; filetyp=directory
3993	actionout[$i]="ar"
3994	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3995	then
3996	actionout[$i]="ar"
3997	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3998	then
3999	files_for_pes=true; filetyp=directory
4000	actionout[$i]="fl"
4001	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4002	then
4003	actionout[$i]="fl"
4004	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4005	then
4006	files_for_pes=true; filetyp=directory
4007	actionout[$i]="tr"
4008	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4009	then
4010	actionout[$i]="tr"
4011	fi
4012
4013	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4014	then
4015	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4016	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4017	then
4018	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4019	else
4020
4021
4022	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4023	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4024	# REMOTE-RECHNUNGEN
4025	if [[ "${actionout[$i]}" = tr ]]
4026	then
4027	if [[ $localhost != $fromhost ]]
4028	then
4029	if [[ $files_for_pes = false ]]
4030	then
4031	cps=""
4032	cst=""
4033	else
4034	cps=-c
4035	cst="/"
4036	fi
4037	if [[ $localhost = nech ]]
4038	then
4039
4040	# TRANSFER IN EIGENSTAENDIGEM JOB
4041	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4042	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4043	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4044	if [[ $files_for_pes = false ]]
4045	then
4046	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4047	else
4048	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4049	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4050	fi
4051
4052	echo "set -x" > transfer_${localout[$i]}
4053	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4054
4055	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4056	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4057	printf "\n or higher cycle\n"
4058	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4059
4060	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4061
4062	if [[ $localhost = nech ]]
4063	then
4064	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4065	else
4066	if [[ "$LOGNAME" = b323013 ]]
4067	then
4068	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4069	else
4070	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4071	fi
4072	fi
4073
4074	else
4075
4076	# TRANSFER INNERHALB DIESES JOBS
4077	transfer_failed=false
4078	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4079	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4080	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4081	[[ $? != 0 ]] && transfer_failed=true
4082
4083	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4084	# LOKALER MASCHINE ANLEGEN
4085	if [[ $transfer_failed = true ]]
4086	then
4087	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4088	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4089
4090	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4091	# ANLEGEN.
4092	eval local_catalog=${pathout[$i]}
4093	if [[ ! -d $local_catalog ]]
4094	then
4095	printf " *** local directory does not exist. Trying to create:\n"
4096	printf " $local_catalog \n"
4097	mkdir -p $local_catalog
4098	fi
4099	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4100	transfer_problems=true
4101	fi
4102	fi
4103	else
4104
4105	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4106	actionout[$i]=""
4107	fi
4108	fi
4109
4110
4111	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4112	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4113	# REMOTE-RECHNUNGEN
4114	if [[ "${actionout[$i]}" = tra ]]
4115	then
4116	if [[ $localhost != $fromhost ]]
4117	then
4118	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4119	then
4120
4121	# TRANSFER IN EIGENSTAENDIGEM JOB
4122	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4123	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4124	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4125	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4126
4127	echo "set -x" > transfer_${localout[$i]}
4128	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4129
4130	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4131	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4132	printf "\n or higher cycle\n"
4133	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4134
4135	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4136
4137	if [[ $localhost = nech ]]
4138	then
4139	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4140	else
4141	if [[ $LOGNAME = b323013 ]]
4142	then
4143	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4144	else
4145	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4146	fi
4147	fi
4148
4149	else
4150
4151	# TRANSFER INNERHALB DIESES JOBS
4152	transfer_failed=false
4153	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4154	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4155	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4156	[[ $? != 0 ]] && transfer_failed=true
4157
4158	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4159	# LOKALER MASCHINE ANLEGEN
4160	if [[ $transfer_failed = true ]]
4161	then
4162	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4163	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4164
4165	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4166	# ANLEGEN
4167	eval local_catalog=${pathout[$i]}
4168	if [[ ! -d $local_catalog ]]
4169	then
4170	printf " *** local directory does not exist. Trying to create:\n"
4171	printf " $local_catalog \n"
4172	mkdir -p $local_catalog
4173	fi
4174
4175	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4176	transfer_problems=true
4177	fi
4178	fi
4179	else
4180
4181	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4182	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4183	actionout[$i]=a
4184	fi
4185	fi
4186
4187
4188	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4189	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4190	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4191	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4192	if [[ "${actionout[$i]}" = fl ]]
4193	then
4194	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4195	chmod g+rx $tmp_data_catalog
4196	if [[ $files_for_pes = false ]]
4197	then
4198	printf "\n >>> OUTPUT: ${localout[$i]} to"
4199	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4200	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4201	else
4202	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4203	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4204	mkdir $tmp_data_catalog/${frelout[$i]}
4205	cd ${localout[$i]}
4206	for file in $(ls *)
4207	do
4208	ln -f $file $tmp_data_catalog/${frelout[$i]}
4209	done
4210	cd $TEMPDIR
4211	fi
4212
4213
4214	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4215	if [[ $store_on_archive_system = true ]]
4216	then
4217
4218	if [[ $archive_system = asterix ]]
4219	then
4220	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4221	if [[ $files_for_pes = false ]]
4222	then
4223	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4224	else
4225	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4226	fi
4227	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4228	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4229	echo "then" >> archive_${frelout[$i]}
4230	echo " do_stageout=false" >> archive_${frelout[$i]}
4231	echo "else" >> archive_${frelout[$i]}
4232	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4233	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4234	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4235	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4236	if [[ $files_for_pes = false ]]
4237	then
4238	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4239	else
4240	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4241	fi
4242	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4243	echo "fi" >> archive_${frelout[$i]}
4244	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4245	elif [[ $archive_system = DMF ]]
4246	then
4247	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4248	if [[ $files_for_pes = false ]]
4249	then
4250	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4251	locat=DMF
4252	exit
4253	else
4254	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4255	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4256	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4257	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4258	fi
4259	elif [[ $archive_system = tivoli ]]
4260	then
4261	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4262	if [[ $files_for_pes = false ]]
4263	then
4264	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4265	echo "set -x" >> archive_${frelout[$i]}
4266	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4267	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4268	else
4269
4270	echo "set -x" >> archive_${frelout[$i]}
4271	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4272	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4273	cd $tmp_data_catalog
4274	all_files=`ls -1 ${frelout[$i]}/*`
4275	cd - > /dev/null
4276	(( inode = 0 ))
4277	(( tp1 = tasks_per_node + 1 ))
4278	while (( inode < nodes ))
4279	do
4280	# echo "*** all_files = \"$all_files\" "
4281	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4282	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4283	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4284	# echo "*** files = \"$files\" "
4285	# echo "*** all_files = \"$all_files\" "
4286	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4287	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4288	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4289	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4290	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4291	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4292	(( inode = inode + 1 ))
4293	done
4294	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4295	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4296	fi
4297	elif [[ $archive_system = ut ]]
4298	then
4299	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4300	if [[ $files_for_pes = false ]]
4301	then
4302	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4303	echo "set -x" >> archive_${frelout[$i]}
4304	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4305	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4306	else
4307
4308	echo "set -x" >> archive_${frelout[$i]}
4309	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4310	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4311	cd $tmp_data_catalog
4312	all_files=`ls -1 ${frelout[$i]}/*`
4313	cd - > /dev/null
4314	(( inode = 0 ))
4315	(( tp1 = tasks_per_node + 1 ))
4316	while (( inode < nodes ))
4317	do
4318	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4319	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4320	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4321	(( inode = inode + 1 ))
4322	done
4323	fi
4324	elif [[ $archive_system = none ]]
4325	then
4326	printf " +++ archiving on $localhost not available!\n"
4327	fi
4328
4329	if [[ $archive_system != none ]]
4330	then
4331	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4332	then
4333	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4334	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4335	elif [[ $localhost = nech ]]
4336	then
4337	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4338	fi
4339	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4340	fi
4341	else
4342	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4343	fi
4344
4345
4346	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4347	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4348	if [[ $files_for_pes = false ]]
4349	then
4350	cat /dev/null > ${pathout[$i]}
4351	else
4352	mkdir -p ${pathout[$i]}
4353	fi
4354
4355	fi
4356
4357
4358	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4359	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4360	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4361	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4362	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4363	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4364	if [[ "${actionout[$i]}" = ar ]]
4365	then
4366	if [[ $files_for_pes = false ]]
4367	then
4368	printf "\n >>> OUTPUT: ${localout[$i]} to"
4369	printf "\n ${pathout[$i]}"
4370	printf "\n File will be copied to archive-system ($archive_system) !\n"
4371	else
4372	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4373	printf "\n ${pathout[$i]}"
4374	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4375	fi
4376	mv ${localout[$i]} ${frelout[$i]}
4377
4378	file_saved=false
4379
4380	if [[ $archive_system = asterix ]]
4381	then
4382	do_stageout=true
4383	(( stageout_anz = 0 ))
4384	while [[ $do_stageout = true ]]
4385	do
4386	if [[ $files_for_pes = false ]]
4387	then
4388	stageout ${frelout[$i]} > STAGE_OUTPUT
4389	else
4390	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4391	fi
4392	cat STAGE_OUTPUT
4393	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4394	then
4395	file_saved=true
4396	do_stageout=false
4397	else
4398	if [[ $files_for_pes = false ]]
4399	then
4400	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4401	else
4402	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4403	fi
4404	(( stageout_anz = stageout_anz + 1 ))
4405	if (( stageout_anz == 10 ))
4406	then
4407	printf "\n +++ stoped after 10 unsuccessful tries!"
4408	archive_save=false
4409	do_stageout=false
4410	else
4411	printf "\n *** new try to store on archive after 15 min:"
4412	sleep 900
4413	fi
4414	fi
4415	done
4416	elif [[ $archive_system = DMF ]]
4417	then
4418	if [[ $files_for_pes = false ]]
4419	then
4420	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4421	locat=DMF
4422	exit
4423	else
4424	rm -rf $ARCHIVE/${frelout[$i]}
4425	cp -r ${frelout[$i]} $ARCHIVE
4426	fi
4427	file_saved=true
4428	elif [[ $archive_system = tivoli ]]
4429	then
4430	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4431	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4432	# GELEGT WERDEN
4433	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4434	chmod g+rx $tmp_data_catalog
4435	if [[ $files_for_pes = false ]]
4436	then
4437	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4438	else
4439	mkdir $tmp_data_catalog/${frelout[$i]}
4440	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4441	fi
4442
4443	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4444	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4445	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4446	if [[ $files_for_pes = false ]]
4447	then
4448	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4449	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4450	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4451	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4452	else
4453	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4454	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4455	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4456	fi
4457
4458	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4459	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4460	file_saved=true
4461
4462	elif [[ $archive_system = ut ]]
4463	then
4464	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4465	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4466	# GELEGT WERDEN
4467	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4468	chmod g+rx $tmp_data_catalog
4469	if [[ $files_for_pes = false ]]
4470	then
4471	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4472	else
4473	mkdir $tmp_data_catalog/${frelout[$i]}
4474	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4475	fi
4476
4477	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4478	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4479	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4480	if [[ $files_for_pes = false ]]
4481	then
4482	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4483	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4484	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4485	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4486	else
4487	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4488	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4489	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4490	fi
4491
4492	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4493	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4494	file_saved=true
4495
4496	else
4497	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4498	archive_save=false
4499	fi
4500	if [[ $file_saved = true ]]
4501	then
4502	if [[ $files_for_pes = false ]]
4503	then
4504	cat /dev/null > ${pathout[$i]}
4505	else
4506	mkdir -p ${pathout[$i]}
4507	fi
4508	fi
4509	fi
4510
4511	# APPEND AUF LOKALER MASCHINE
4512	if [[ "${actionout[$i]}" = "a" ]]
4513	then
4514	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4515	then
4516	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4517	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4518	else
4519	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4520	cat ${localout[$i]} >> ${pathout[$i]}
4521	fi
4522	fi
4523
4524	# KOPIEREN AUF LOKALER MASCHINE
4525	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4526	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4527	then
4528
4529	# KOPIEREN AUF EINPROZESSORMASCHINE
4530	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4531	then
4532	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4533	if [[ $link_local_output = true ]]
4534	then
4535	printf " using ln -f\n"
4536	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4537	fi
4538	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4539	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4540	then
4541	if [[ $link_local_output = true ]]
4542	then
4543	printf " ln failed, using cp...\n"
4544	fi
4545	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4546	fi
4547	else
4548	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4549	if [[ $link_local_output = true ]]
4550	then
4551	printf " using ln -f\n"
4552	ln -f ${localout[$i]} ${pathout[$i]}
4553	fi
4554	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4555	if [[ ! -f "${pathout[$i]}" ]]
4556	then
4557	if [[ $link_local_output = true ]]
4558	then
4559	printf " ln failed, using cp...\n"
4560	fi
4561	cp ${localout[$i]} ${pathout[$i]}
4562	fi
4563	fi
4564
4565	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4566	then
4567
4568	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4569	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4570	# WIRD DANN KOPIERT
4571	# PER MOVE UMBENANNT WERDEN
4572	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4573	if [[ $link_local_output = true ]]
4574	then
4575	printf " using ln -f\n"
4576	mkdir ${pathout[$i]}
4577	cd ${localout[$i]}
4578	for file in $(ls *)
4579	do
4580	ln -f $file ${pathout[$i]}
4581	done
4582	cd $TEMPDIR
4583	fi
4584	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4585	if [[ ! -f "${pathout[$i]}/_0000" ]]
4586	then
4587	if [[ $link_local_output = true ]]
4588	then
4589	printf " ln failed for .../_0000, using cp...\n"
4590	fi
4591	cp -r ${localout[$i]} ${pathout[$i]}
4592	fi
4593
4594	fi
4595	fi
4596	done
4597	if (( i != 0 ))
4598	then
4599	if [[ $transfer_problems = true ]]
4600	then
4601	printf "\n$striche\n *** OUTPUT-files saved"
4602	printf "\n +++ WARNING: some data transfers failed! \n"
4603	else
4604	printf "\n$striche\n *** all OUTPUT-files saved \n"
4605	fi
4606	fi
4607
4608
4609	# EVENTUELL FOLGEJOB STARTEN
4610	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4611	if [[ -f CONTINUE_RUN ]]
4612	then
4613
4614	if [[ $archive_save = true ]]
4615	then
4616
4617	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4618	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4619	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4620	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4621	# HANDEN
4622	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4623	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4624	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4625	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4626	then
4627	mc=`echo $mc \| sed 's/#/f/g'`
4628	fi
4629
4630
4631	# JOB STARTEN
4632	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4633	echo " $mc"
4634	printf "\n$striche\n"
4635	if [[ $localhost != $fromhost ]]
4636	then
4637
4638	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4639	then
4640	echo "*** ssh will be used to initiate restart-runs!"
4641	echo " return_addres=\"$return_addres\" "
4642	echo " return_username=\"$return_username\" "
4643	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4644	then
4645	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4646	else
4647	if [[ $localhost = ibmkisti ]]
4648	then
4649	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4650	else
4651	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4652	fi
4653	fi
4654	else
4655	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4656	locat=restart; exit
4657	fi
4658
4659	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4660	# DER AKTUELLE JOB ENDET
4661	if [[ $queue = special1q ]]
4662	then
4663	sleep 120
4664	else
4665	sleep 30
4666	fi
4667
4668	else
4669
4670	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4671	# RUFEN WERDEN, AUSSER AUF lcfimm
4672	cd $LOCAL_PWD
4673	if [[ $localhost = lcfimm ]]
4674	then
4675	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4676	else
4677	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4678	fi
4679	cd - > /dev/null
4680	fi
4681	printf "\n$striche\n *** restart-run initiated \n"
4682
4683
4684	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4685	# GEHOLT WORDEN SIND, LOESCHEN
4686	(( i = 0 ))
4687	while (( i < iin ))
4688	do
4689	(( i = i + 1 ))
4690	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4691	then
4692	rm -r $tmp_data_catalog/${frelin[$i]}
4693	fi
4694	done
4695
4696	else
4697
4698	printf "\n +++ no restart-run possible, since errors occured"
4699	printf "\n during the archive process"
4700	fi
4701
4702	fi
4703
4704
4705
4706	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4707	if [[ "$email_notification" != "none" ]]
4708	then
4709
4710	if [[ $localhost != $fromhost ]]
4711	then
4712	if [[ -f CONTINUE_RUN ]]
4713	then
4714	echo "PALM restart run necessary" > email_text
4715	echo "description header of actual run:" >> email_text
4716	cat CONTINUE_RUN >> email_text
4717	echo "mrun-command to restart:" >> email_text
4718	echo "$mc" >> email_text
4719	else
4720	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4721	fi
4722	mail $email_notification < email_text
4723	printf "\n *** email notification sent to \"$email_notification\" "
4724	fi
4725	fi
4726
4727
4728
4729	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4730	cd $HOME
4731	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4732
4733	else
4734
4735
4736	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4737	# CHENDE AKTIONEN DURCHGEFUEHRT
4738
4739	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4740	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4741	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4742	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4743	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4744	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4745	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4746	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4747	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4748	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4749	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4750	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4751	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4752	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4753	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4754	if [[ $use_openmp = true ]]
4755	then
4756	mrun_com=${mrun_com}" -O $threads_per_task"
4757	fi
4758	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4759	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4760	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4761	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4762	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4763	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4764	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4765	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4766	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4767	if [[ $do_remote = true ]]
4768	then
4769	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4770	fi
4771
4772
4773	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4774	jobfile=jobfile.$RANDOM
4775
4776
4777	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4778	echo "mkdir $TEMPDIR" >> $jobfile
4779	echo "cd $TEMPDIR" >> $jobfile
4780
4781
4782	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4783	if [[ $do_trace = true ]]
4784	then
4785	echo "set -x" >> $jobfile
4786	else
4787	echo "set +vx" >> $jobfile
4788	fi
4789
4790
4791	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4792	# DATEI FUER DEN JOB
4793	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4794	then
4795
4796	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4797	# KOPIEREN
4798	if [[ $restart_run != true ]]
4799	then
4800	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4801	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4802	fi
4803
4804	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4805	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4806	echo "set -x" >> $jobfile
4807	if [[ $host = $localhost ]]
4808	then
4809	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4810	else
4811	if [[ $host != ibmkisti ]]
4812	then
4813	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4814	else
4815	# on KISTI's IBM firewall is only opened on interactive node
4816	echo "localdir=\`pwd\`" >> $jobfile
4817	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4818	fi
4819	fi
4820	echo "export SOURCES_COMPLETE=true" >> $jobfile
4821
4822	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4823	# ARBEITSVERZEICHNIS VERSCHIEBEN
4824	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4825	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4826	echo "execute_mrun=true" >> $jobfile
4827	echo " " >> $jobfile
4828
4829	else
4830
4831	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4832	# SOWIE GEGEBENENFALLS DES MAKEFILES
4833	if [[ $do_compile = true ]]
4834	then
4835
4836	source_catalog=SOURCES_FOR_RUN_$fname
4837
4838	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4839	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4840	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4841	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4842	echo "export SOURCES_COMPLETE=true" >> $jobfile
4843	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4844
4845	for filename in $source_list
4846	do
4847	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4848	echo "cat > $filename << \"%END%\"" >> $jobfile
4849	cat $source_catalog/$filename >> $jobfile
4850	echo " " >> $jobfile
4851	echo "%END%" >> $jobfile
4852	echo " " >> $jobfile
4853	done
4854
4855	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4856	echo "cat > Makefile << \"%END%\"" >> $jobfile
4857	cat $source_catalog/Makefile >> $jobfile
4858	echo " " >> $jobfile
4859	echo "%END%" >> $jobfile
4860	echo " " >> $jobfile
4861
4862	echo "cd - > /dev/null" >> $jobfile
4863
4864	fi
4865
4866
4867	# ABSPEICHERN DER KONFIGURATIONSDATEI
4868	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4869	echo "cat > $config_file << \"%END%\"" >> $jobfile
4870	cat $config_file >> $jobfile
4871	echo "%END%" >> $jobfile
4872	echo " " >> $jobfile
4873
4874
4875	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4876	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4877	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4878	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4879	echo "%END%" >> $jobfile
4880	echo "chmod u+x $mrun_script_name" >> $jobfile
4881	echo "execute_mrun=true" >> $jobfile
4882	echo " " >> $jobfile
4883
4884	fi
4885
4886
4887	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4888	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4889	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4890	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4891	if [[ $do_remote = true ]]
4892	then
4893	(( i = 0 ))
4894	while (( i < iin ))
4895	do
4896	(( i = i + 1 ))
4897	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4898	if [[ "${transin[$i]}" = job ]]
4899	then
4900	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4901	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4902	echo " " >> $jobfile
4903	echo "%END%" >> $jobfile
4904	else
4905	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4906	fi
4907
4908	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4909	echo "if [[ \$? = 1 ]]" >> $jobfile
4910	echo "then" >> $jobfile
4911	echo " echo \" \" " >> $jobfile
4912	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4913	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4914	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4915	echo " execute_mrun=false" >> $jobfile
4916	echo "fi" >> $jobfile
4917	done
4918	fi
4919
4920	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4921	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4922	echo "LOCAL_PWD=$working_directory" >> $jobfile
4923	echo "export LOCAL_PWD" >> $jobfile
4924
4925	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4926	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4927	echo "export LOCAL_MRUN_PATH" >> $jobfile
4928
4929	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4930	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4931	then
4932	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4933	fi
4934
4935	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4936	echo "set -x" >> $jobfile
4937	echo "queue=$queue" >> $jobfile
4938	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4939
4940	echo 'ls -al; echo `pwd`' >> $jobfile
4941	echo "cd \$HOME" >> $jobfile
4942	echo "rm -rf $TEMPDIR" >> $jobfile
4943
4944
4945
4946
4947	# JOB PER SUBJOB STARTEN
4948	if [[ $silent = false ]]
4949	then
4950	printf "\n "
4951	else
4952	printf "\n\n"
4953	fi
4954
4955	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4956	rm -rf $jobfile
4957
4958
4959	fi # ENDE REMOTE-TEIL
4960
4961
4962
4963	# ENDE DER PROZEDUR

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