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source: palm/trunk/SCRIPTS/mrun @ 811

Last change on this file since 811 was 807, checked in by maronga, 13 years ago
new utility check_namelist_files implemented
Property svn:keywords set to `Id Rev`
File size: 186.3 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 807 2012-01-25 11:53:51Z maronga $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239
240
241	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
242
243	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
244	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
245	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
246
247	AddFilenames=""
248	additional_conditions=""
249	add_source_path=""
250	afname=""
251	archive_save=true
252	archive_system=none
253	check_namelist_files=true
254	compiler_name=""
255	cond1=""
256	cond2=""
257	config_file=.mrun.config
258	coupled_dist=""
259	coupled_mode="mpi1"
260	cpp_opts=""
261	cpp_options=""
262	cpumax=0
263	cpurest=0
264	delete_temporary_catalog=true
265	do_batch=false
266	do_compile=true
267	do_remote=false
268	do_stagein=true
269	do_stageout=true
270	do_trace=false
271	email_notification="none"
272	exclude=""
273	executable=""
274	execution_error=false
275	fimm=false
276	fname=test
277	fromhost=""
278	global_revision=""
279	group_number=none
280	host=""
281	host_file=""
282	hp=""
283	ignore_archive_error=false
284	input_list=""
285	interpreted_config_file=""
286	job_catalog="~/job_queue"
287	job_on_file=""
288	keep_data_from_previous_run=false
289	link_local_input=false
290	link_local_output=false
291	localhost_realname=$(hostname)
292	local_compile=false
293	local_dvrserver_running=.FALSE.
294	locat=normal
295	mainprog=""
296	makefile=""
297	max_par_io_str=""
298	mc=$0
299	while [[ $(echo $mc \| grep -c "/") != 0 ]]
300	do
301	mc=`echo $mc \| cut -f2- -d"/"`
302	done
303	module_calls=""
304	mrun_script_name=$mc
305	netcdf_inc=""
306	netcdf_lib=""
307	netcdf_support=false
308	node_usage=default
309	numprocs=""
310	numprocs_atmos=0
311	numprocs_ocean=0
312	OOPT=""
313	openmp=false
314	output_list=""
315	package_list=""
316	punkte="..........................................................."
317	p3d_suffix=""
318	queue=none
319	read_from_config=""
320	restart_run=false
321	if [[ `hostname` = rte10 ]]
322	then
323	return_addres=133.5.185.60
324	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
325	elif [[ `hostname` = climate0 ]]
326	then
327	return_addres=165.132.26.68
328	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
329	else
330	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
331	fi
332	return_password=""
333	return_username=$LOGNAME
334	remotecall=false
335	remote_username=""
336	run_coupled_model=false
337	run_mode=""
338	scirocco=false
339	store_on_archive_system=false
340	striche=" ----------------------------------------------------------------------------"
341	silent=false
342	source_list=""
343	source_path=SOURCE
344	tasks_per_node=""
345	threads_per_task=1
346	tmpcreate=false
347	tmp_data_catalog=""
348	transfer_problems=false
349	usern=$LOGNAME
350	use_openmp=false
351	working_directory=`pwd`
352	TOPT=""
353	XOPT=""
354	zeit=$( date \| cut -c 12-19 )
355
356	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
357	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
358
359	typeset -R30 calltime
360	typeset -L20 spalte1
361	typeset -L40 spalte2
362	typeset -L60 spalte3
363	typeset -L35 string1=`date`
364	typeset -L12 string2=$usern
365	typeset -L12 string3=$localhost_realname
366	typeset -L12 string4
367	typeset -L12 string5
368	typeset -L30 version="MRUN 2.0 Rev$Rev: 807 $"
369
370
371
372	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
373	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
374
375	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
376	# EXPORTIERT WERDEN
377	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
378	export group_number input_list memory numprocs output_list queue run_mode
379
380
381
382	# FEHLERBEHANDLUNG
383	# BEI EXIT:
384	trap 'rm -rf $working_directory/tmp_mrun
385	if [[ $locat != localhost ]]
386	then
387	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
388	# then
389	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
390	#MRUN-calls on $localhost
391	#
392	#date and time user localhost remotehost termination mrun-command
393	#--------------------------------------------------------------------------------------------------------------------
394	#%STATEND%
395	# chmod 666 ${mrun_path}/statistik/mrun_statistik
396	# fi
397	#
398	# # EINTRAG IN DIE STATISTIK-DATEI
399	# string4=$host
400	# string5=$locat
401	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
402	# then
403	# if [[ $do_batch = true ]]
404	# then
405	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
406	# else
407	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
408	# fi
409	# fi
410	echo " " > /dev/null
411	fi
412
413	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
414	then
415
416	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
417	(( i = 0 ))
418	while (( i < iec ))
419	do
420	(( i = i + 1 ))
421	printf "\n *** Execution of ERROR-command:\n"
422	printf " >>> ${err_command[$i]}\n"
423	eval ${err_command[$i]}
424	done
425	if [[ -n $interpreted_config_file ]] then
426	rm -rf $interpreted_config_file
427	fi
428	if [[ -n .mrun_environment ]] then
429	rm -rf .mrun_environment
430	fi
431	if [[ $tmpcreate = true ]]
432	then
433	printf "\n *** Contents of \"$TEMPDIR\":\n"
434	ls -al; cd
435	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
436	fi
437	if [[ "$dvrserver_id" != "" ]]
438	then
439	echo "+++ killing dvrserver_id=$dvrserver_id"
440	kill $dvrserver_id
441	fi
442	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
443	then
444	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
445	fi
446	printf "\n\n+++ MRUN killed \n\n"
447	elif [[ $locat != control_c ]]
448	then
449	printf "\n\n --> all actions finished\n\n"
450	printf " Bye, bye $usern !!\n\n"
451	fi' exit
452
453
454	# BEI TERMINAL-BREAK:
455	trap 'rm -rf $working_directory/tmp_mrun
456	rm -rf $working_directory/tmp_check_namelist_files
457	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
458	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
459	then
460	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
461	fi
462	if [[ "$dvrserver_id" != "" ]]
463	then
464	echo "+++ killing dvrserver_id=$dvrserver_id"
465	kill $dvrserver_id
466	fi
467	printf "\n+++ MRUN killed by \"^C\" \n\n"
468	locat=control_c
469	exit
470	' 2
471
472
473	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
474	# BEEN SET
475	if [[ "$PALM_BIN" = "" ]]
476	then
477	printf "\n +++ environment variable PALM_BIN has not been set"
478	printf "\n please set it to the directory where the PALM scripts are located"
479	locat=palm_bin; exit
480	fi
481	export PATH=$PALM_BIN:$PATH
482
483
484
485	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
486	# FUER FOLGEJOBS BENOETIGT WIRD
487	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
488	do
489	case $option in
490	(a) afname=$OPTARG;;
491	(A) store_on_archive_system=true; mc="$mc -A";;
492	(b) do_batch=true; mc="$mc -b";;
493	(B) delete_temporary_catalog=false; mc="$mc -B";;
494	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
495	(C) restart_run=true; mc="$mc -C";;
496	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
497	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
498	(F) job_on_file="-D"; mc="$mc -F";;
499	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
500	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
501	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
502	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
503	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
504	(I) ignore_archive_error=true; mc="$mc -I";;
505	(k) keep_data_from_previous_run=true; mc="$mc -k";;
506	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
507	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
508	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
509	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
510	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
511	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
512	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
513	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
514	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
515	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
516	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
517	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
518	(S) read_from_config=false; mc="$mc -S";;
519	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
520	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
521	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
522	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
523	(v) silent=true; mc="$mc -v";;
524	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
525	(x) do_trace=true;set -x; mc="$mc -x";;
526	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
527	(y) ocean_file_appendix=true; mc="$mc -y";;
528	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
529	(z) check_namelist_files=false; mc="$mc -z";;
530	(\?) printf "\n +++ unknown option $OPTARG \n"
531	printf "\n --> type \"$0 ?\" for available options \n"
532	locat=parameter;exit;;
533	esac
534	done
535
536
537	# EVTL. POSITIONSPARAMETER EINLESEN
538	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
539	shift OPTIND-1
540
541
542	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
543	if [[ "$1" = "?" ]]
544	then
545	(printf "\n *** mrun can be called as follows:\n"
546	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
547	printf "\n Description of available options:\n"
548	printf "\n Option Description Default-Value"
549	printf "\n -a base name of input files equiv. -d"
550	printf "\n -A archiving when using file-attribute fl"
551	printf "\n -b batch-job on local machine ---"
552	printf "\n -B do not delete temporary directory at end ---"
553	printf "\n -c configuration file .mrun.config"
554	printf "\n -d base name of files attached to program test"
555	printf "\n -D preprocessor(cpp)-directives \"\" "
556	printf "\n -F create remote job file only ---"
557	printf "\n -h execution host $localhost_realname"
558	printf "\n -i INPUT control list \"\" "
559	printf "\n -I archiving errors of previous batch-jobs"
560	printf "\n will be ignored"
561	printf "\n -k keep data from previous run"
562	printf "\n -K additional conditions for controling"
563	printf "\n usage of conditional code and"
564	printf "\n env-variables in configuration file \"\" "
565	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
566	printf "\n -M Makefile name Makefile"
567	printf "\n -n node usage (shared/not_shared) depending on -h"
568	printf "\n -o OUTPUT control list \"\" "
569	printf "\n -O use OpenMP ---"
570	printf "\n -p software package list \"\" "
571	printf "\n -q queue \"$queue\" "
572	printf "\n -r run control list (combines -i -o) \"\" "
573	printf "\n -s filenames of routines to be compiled \"\" "
574	printf "\n must end with .f, .f90, .F, or .c !"
575	printf "\n use \"..\" for more than one file and wildcards"
576	printf "\n -s TEST compiles all files with w-permit"
577	printf "\n -S config file interpreted by shellscript ---"
578	printf "\n -t allowed cpu-time in seconds (batch) 0"
579	printf "\n -T tasks per node depending on -h"
580	printf "\n -u username on remote machine \"\" "
581	printf "\n -v no prompt for confirmation ---"
582	printf "\n -w maximum parallel io streams as given by -X"
583	printf "\n -x tracing of mrun for debug purposes ---"
584	printf "\n -X # of processors (on parallel machines) 1"
585	printf "\n -y add appendix \"_O\" to all local output"
586	printf "\n files (ocean precursor runs followed by"
587	printf "\n coupled atmosphere-ocean runs) ---"
588	printf "\n -Y run coupled model, \"#1 #2\" with"
589	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
590	printf "\n "
591	printf "\n Possible values of positional parameter <modus>:"
592	printf "\n \"?\" - this outline \n\n") \| more
593	exit
594	elif [[ "$1" != "" ]]
595	then
596	printf "\n +++ positional parameter $1 unknown \n"
597	locat=parameter; exit
598	fi
599
600
601
602	# KURZE STARTMELDUNG
603	printf "\n*** $version "
604	printf "\n will be executed. Please wait ..."
605
606
607
608	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
609	if [[ ! -f $config_file ]]
610	then
611	printf "\n\n +++ configuration file: "
612	printf "\n $config_file"
613	printf "\n does not exist"
614	locat=connect; exit
615	fi
616
617
618	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
619	line=""
620	grep "%host_identifier" $config_file > tmp_mrun
621	while read line
622	do
623	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
624	then
625	HOSTNAME=`echo $line \| cut -d" " -s -f2`
626	host_identifier=`echo $line \| cut -d" " -s -f3`
627	if [[ $localhost_realname = $HOSTNAME ]]
628	then
629	localhost=$host_identifier
630	break
631	fi
632	fi
633	done < tmp_mrun
634
635	if [[ "$localhost" = "" ]]
636	then
637	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
638	printf "\n for local host \"$localhost_realname\"."
639	printf "\n Please add line"
640	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
641	printf "\n to the configuration file."
642	locat=localhost; exit
643	fi
644
645
646	# HOSTSPEZIFISCHE VARIABLEN SETZEN
647	case $localhost_realname in
648	(r1\|r2\|h01\|b01) archive_system=tivoli;;
649	(cs*) archive_system=ut;;
650	(fimm.bccs.uib.no) fimm=true;;
651	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
652	(scirocco) scirocco=true;;
653	esac
654
655
656
657	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
658	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
659	[[ "$afname" = "" ]] && afname=$fname
660
661
662	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
663	if [[ "$run_mode" != "" ]]
664	then
665	input_list="$input_list $run_mode"
666	output_list="$output_list $run_mode"
667	fi
668
669
670	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
671	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
672	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
673	# STARTET)
674	if [[ "$fromhost" = "" ]]
675	then
676	fromhost=$localhost
677	fi
678
679
680	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
681	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
682	then
683	source_list=TEST
684	local_compile=true
685	host=$localhost
686	fi
687
688
689	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
690	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
691	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
692	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
693	if [[ -n $host && "$host" != $localhost ]]
694	then
695	do_batch=true
696	do_remote=true
697	case $host in
698	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
699	(*) printf "\n"
700	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
701	printf "\n is not available"
702	locat=nqs; (( iec = 0 )); exit;;
703	esac
704	else
705	host=$localhost
706	fi
707
708
709	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
710	if [[ -n $additional_conditions ]]
711	then
712	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
713	cond1=`echo $additional_conditions \| cut -d" " -f1`
714	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
715	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
716	if [[ -n $dummy ]]
717	then
718	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
719	locat=options; exit
720	fi
721	block=_$cond1
722	[[ -n $cond2 ]] && block=${block}_$cond2
723	fi
724
725
726	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
727	if [[ $run_coupled_model = true ]]
728	then
729
730	if [[ -n $coupled_dist ]]
731	then
732
733	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
734	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
735
736	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
737	then
738
739	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
740	printf "\n PEs (total) : $numprocs"
741	printf "\n PEs (atmosphere): $numprocs_atmos"
742	printf "\n PEs (ocean) : $numprocs_ocean"
743	locat=coupling; exit
744
745	fi
746
747	else
748
749	(( numprocs_ocean = $numprocs / 2 ))
750	(( numprocs_atmos = $numprocs / 2 ))
751
752	fi
753	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
754
755	# GET coupled_mode FROM THE CONFIG FILE
756	line=""
757	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
758	while read line
759	do
760	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
761	then
762	coupled_mode="mpi2"
763	fi
764	done < tmp_mrun
765
766	fi
767
768
769	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
770	# ARCHIVIERUNG FEHLGESCHLAGEN IST
771	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
772	then
773	if [[ $ignore_archive_error = false ]]
774	then
775	printf "\n +++ data archiving of previous run failed"
776	printf "\n see directory \~/job_queue on remote machine"
777	locat=archive; exit
778	else
779	printf "\n +++ warning: data archiving in a previous run failed"
780	printf "\n MRUN continues, trying to get backup copy"
781	fi
782	fi
783
784
785
786	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
787	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
788	if [[ "$read_from_config" = false ]]
789	then
790
791	[[ $silent = false ]] && printf "\n Reading the configuration file... "
792	while read zeile
793	do
794	[[ $silent = false ]] && printf "."
795
796
797	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
798	# ERSETZEN
799	eval zeile=\"$zeile\"
800
801
802	# INTERPRETATION DER ZEILE
803	if [[ "$(echo $zeile)" = "" ]]
804	then
805	# LEERZEILE, KEINE AKTION
806	continue
807
808	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
809	then
810
811	# ZEILE IST KOMMENTARZEILE
812	true
813
814	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
815	then
816
817	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
818	zeile=$(echo $zeile \| cut -c2-)
819	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
820	var=`echo $zeile \| cut -d" " -f1`
821	value=`echo $zeile \| cut -d" " -s -f2`
822	for_host=`echo $zeile \| cut -d" " -s -f3`
823	for_cond1=`echo $zeile \| cut -d" " -s -f4`
824	for_cond2=`echo $zeile \| cut -d" " -s -f5`
825
826	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
827	then
828
829	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
830	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
831	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
832
833
834	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
835	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
836	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
837	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
838	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
839	# KONFIGURATIONSDATEI
840	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
841	then
842	eval $var=\$value
843
844	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
845	if [[ $do_trace = true ]]
846	then
847	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
848	fi
849	fi
850
851	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
852	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
853	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
854	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
855	if [[ $var = host ]]
856	then
857	if [[ -n $host && "$host" != $localhost ]]
858	then
859	do_batch=true
860	do_remote=true
861	case $host in
862	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
863	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
864	printf "\n is not available"
865	locat=nqs; exit;;
866	esac
867	else
868	host=$localhost
869	fi
870	fi
871
872	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
873	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
874	# DEN PROGRAMMEN BENOETIGT WERDEN
875	export $var
876	fi
877
878
879
880
881	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
882	then
883
884	# ZEILE DEFINIERT ERROR-KOMMANDO
885	(( iec = iec + 1 ))
886	zeile=$(echo $zeile \| cut -c4-)
887	err_command[$iec]="$zeile"
888
889	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
890	then
891
892	# ZEILE DEFINIERT INPUT-KOMMANDO
893	(( iic = iic + 1 ))
894	zeile=$(echo $zeile \| cut -c4-)
895	in_command[$iic]="$zeile"
896
897	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
898	then
899
900	# ZEILE DEFINIERT OUTPUT-KOMMANDO
901	(( ioc = ioc + 1 ))
902	zeile=$(echo $zeile \| cut -c4-)
903	out_command[$ioc]="$zeile"
904
905	else
906
907	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
908	# s2a: in/out - Feld
909	# s2b: loc - Feld (optional)
910	# s2c: tr/ar - Feld (optional)
911	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
912	s1=`echo $zeile \| cut -d" " -f1`
913	s2=`echo $zeile \| cut -d" " -s -f2`
914	s2a=$(echo $s2 \| cut -d":" -f1)
915	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
916	then
917	s2b=""
918	s2c=""
919	else
920	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
921	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
922	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
923	fi
924	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
925	s3=`echo $zeile \| cut -d" " -f3`
926	s4=`echo $zeile \| cut -d" " -s -f4`
927	s5=`echo $zeile \| cut -d" " -s -f5`
928	s6=`echo $zeile \| cut -d" " -s -f6`
929
930
931	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
932	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
933	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
934	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
935	# HANDEN SEIN MUSS (D.H. s2b = loc)
936	IFSALT="$IFS"; IFS="$IFS:"
937	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
938	then
939	found=false
940	for actual in $input_list
941	do
942	for formal in $s3
943	do
944	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
945	done
946	done
947	if [[ $found = true ]]
948	then
949	(( iin = iin + 1 ))
950	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
951	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
952	extin[$iin]=$s6
953	fi
954	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
955	then
956	found=false
957	for actual in $output_list
958	do
959	for formal in $s3
960	do
961	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
962	done
963	done
964	if [[ $found = true ]]
965	then
966	(( iout = iout + 1 ))
967	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
968	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
969	fi
970	elif [[ "$s2a" != in && "$s2a" != out ]]
971	then
972	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
973	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
974	locat=connect; exit
975	fi
976	IFS="$IFSALT"
977	fi
978	done < $config_file
979
980	else
981
982
983	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
984	[[ $silent = false ]] && printf "..."
985	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
986	export interpreted_config_file=.icf.$RANDOM
987
988
989
990	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
991	# VERFUEGUNG STELLEN
992	cat > .mrun_environment << %%END%%
993	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
994	config_file = '$config_file', do_remote = '$do_remote',
995	do_trace = '$do_trace', host = '$host',
996	input_list = '$input_list', icf = '$interpreted_config_file',
997	localhost = '$localhost', output_list = '$output_list' /
998
999	%%END%%
1000
1001	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1002	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1003	mrun_memory=$memory
1004	mrun_group_number=$group_number
1005	mrun_cpumax=$cpumax
1006	mrun_numprocs=$numprocs
1007
1008	if [[ $localhost_realname = "sx-fep" ]]
1009	then
1010	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1011	else
1012
1013	if [[ "$host" != $localhost ]]
1014	then
1015
1016	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1017	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1018	if [[ $? != 0 ]]
1019	then
1020	printf "\n\n +++ no interpret_config found"
1021	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1022	locat=interpret_config; exit
1023	fi
1024	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1025	$interpret_config_executable
1026
1027	else
1028
1029	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1030	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1031	then
1032	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1033	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1034	locat=interpret_config; exit
1035	else
1036	interpret_config${block}.x
1037	fi
1038
1039	fi
1040	fi
1041	rm .mrun_environment
1042
1043
1044	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1045	chmod u+x $interpreted_config_file
1046	export PATH=$PATH:.
1047	. $interpreted_config_file
1048	rm $interpreted_config_file
1049
1050
1051	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1052	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1053	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1054	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1055	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1056	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1057	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1058
1059	fi
1060
1061
1062	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1063	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1064	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1065	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1066	if [[ "$SOURCES_COMPLETE" = "" ]]
1067	then
1068
1069	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1070	# VEREINBART WURDE
1071	source_path=""
1072	line=""
1073	grep "%source_path" $config_file > tmp_mrun
1074	while read line
1075	do
1076	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1077	then
1078	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1079	then
1080	global_source_path=`echo $line \| cut -d" " -f2`
1081	fi
1082	fi
1083	done < tmp_mrun
1084
1085	line=""
1086	found=false
1087	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1088	while read line
1089	do
1090	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1091	then
1092	if [[ $found = true ]]
1093	then
1094	printf "\n\n +++ more than one source path found in configuration file"
1095	printf "\n for local host \"$localhost\" "
1096	locat=source_path; exit
1097	fi
1098	source_path=`echo $line \| cut -d" " -f2`
1099	found=true
1100	fi
1101	done < tmp_mrun
1102	rm tmp_mrun
1103
1104	if [[ "$source_path" = "" ]]
1105	then
1106	if [[ "$global_source_path" != "" ]]
1107	then
1108	source_path=$global_source_path
1109	else
1110	printf "\n\n +++ no source path found in configuration file"
1111	printf "\n for local host \"$localhost\" "
1112	locat=source_path; exit
1113	fi
1114	fi
1115	eval source_path=$source_path
1116
1117	if [[ ! -d $source_path ]]
1118	then
1119	printf "\n\n +++ source path \"$source_path\" on local host"
1120	printf "\n \"$localhost\" does not exist"
1121	locat=source_path; exit
1122	fi
1123
1124	fi
1125
1126
1127	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1128	# DURCH OPTION -G MITGETEILT)
1129	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1130	then
1131	global_revision=`svnversion $source_path 2>/dev/null`
1132	global_revision="Rev: $global_revision"
1133	fi
1134
1135
1136	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1137	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1138	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1139	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1140	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1141	if [[ -n $host && "$host" != $localhost ]]
1142	then
1143	do_batch=true
1144	do_remote=true
1145	case $host in
1146	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1147	(*) printf "\n"
1148	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1149	printf "\n is not available"
1150	locat=nqs; (( iec = 0 )); exit;;
1151	esac
1152	else
1153	host=$localhost
1154	fi
1155
1156
1157	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1158	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1159	then
1160
1161	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1162	if [[ ! -n $numprocs ]]
1163	then
1164	printf "\n"
1165	printf "\n +++ option \"-K parallel\" requires additional specification"
1166	printf "\n of the number of processors to be used by"
1167	printf "\n mrun-option \"-X\" or by environment-variable"
1168	printf "\n \"numprocs\" in the configuration file"
1169	locat=numprocs; (( iec = 0 )); exit
1170	fi
1171
1172	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1173	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1174	# GESAMTPROZESSORANZAHL IST
1175	if [[ "$tasks_per_node" = "" ]]
1176	then
1177	printf "\n"
1178	printf "\n +++ option \"-T\" (tasks per node) is missing"
1179	printf "\n set -T option or define tasks_per_node in the config file"
1180	locat=tasks_per_node; (( iec = 0 )); exit
1181	fi
1182	(( ival = $tasks_per_node ))
1183	(( pes = numprocs ))
1184	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1185	# then
1186	# (( pes = pes - 1 ))
1187	# fi
1188	(( ii = pes / ival ))
1189	if (( pes - ii * ival > 0 ))
1190	then
1191	printf "\n"
1192	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1193	printf "\n divisor of the total number of processors (option \"-X\")"
1194	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1195	locat=tasks_per_node; (( iec = 0 )); exit
1196	fi
1197
1198
1199	# IBMY HAT NUR EINEN KNOTEN
1200	if [[ $host = ibmy ]]
1201	then
1202	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1203	then
1204	printf "\n"
1205	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1206	printf "\n total number of processors (option \"-X\")"
1207	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1208	locat=tasks_per_node; (( iec = 0 )); exit
1209	fi
1210	fi
1211
1212
1213	# SETTINGS FOR SUBJOB-COMMAND
1214	TOPT="-T $tasks_per_node"
1215	OOPT="-O $threads_per_task"
1216
1217	# GESAMTZAHL DER KNOTEN BESTIMMEN
1218	if [[ "$tasks_per_node" != "" ]]
1219	then
1220	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1221	fi
1222
1223	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1224	# SETZEN
1225	if [[ $node_usage = default ]]
1226	then
1227	if [[ $host = ibms ]]
1228	then
1229	node_usage=shared
1230	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1231	then
1232	node_usage=singlejob
1233	else
1234	node_usage=not_shared
1235	fi
1236	fi
1237
1238	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1239	then
1240	printf "\n"
1241	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1242	printf "\n \"shared\" or \"not_shared\""
1243	locat=tasks_per_node; (( iec = 0 )); exit
1244	fi
1245
1246	fi
1247
1248	# PRUEFEN, OB HOSTFILE EXISTIERT
1249	if [[ -n $hostfile ]]
1250	then
1251	if [[ ! -f $hostfile ]]
1252	then
1253	printf "\n"
1254	printf "\n +++ hostfile \"$hostfile\" does not exist"
1255	locat=hostfile; exit
1256	fi
1257	fi
1258
1259	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1260	if [[ $host = ibmy && $do_remote = false ]]
1261	then
1262	if [[ ! -f $HOME/.rhosts ]]
1263	then
1264	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1265	printf "\n\n *** file:"
1266	printf "\n $HOME/.rhosts"
1267	printf "\n was created\n"
1268	fi
1269	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1270	then
1271	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1272	printf "\n\n *** file:"
1273	printf "\n $HOME/.rhosts"
1274	printf "\n was extended by the name of the current host\n"
1275	fi
1276	fi
1277
1278
1279	# Set default value for the maximum number of parallel io streams
1280	if [[ "$maximum_parallel_io_streams" = "" ]]
1281	then
1282	maximum_parallel_io_streams=$numprocs
1283	fi
1284
1285
1286	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1287	if [[ $queue = none ]]
1288	then
1289	case $host in
1290	(ibmh) queue=no_class;;
1291	(ibmkisti) queue=class.32plus;;
1292	(ibmy) queue=parallel;;
1293	(lckyoto) queue=ph;;
1294	(lcsgib) queue=bigq;;
1295	(lcsgih) queue=bigq;;
1296	(lctit) queue=S;;
1297	(nech) queue=none;;
1298	(necriam) queue=SP;;
1299	(unics) queue=unics;;
1300	esac
1301	fi
1302
1303
1304	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1305	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1306	# ERMITTELN
1307	(( i = 0 ))
1308	while (( i < iin ))
1309	do
1310	(( i = i + 1 ))
1311	(( maxcycle = 0 ))
1312
1313	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1314	if [[ "${actionin[$i]}" = di ]]
1315	then
1316	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1317	# REM-MASCHINE AUSWERTEN
1318	eval filename=${pathin[$i]}/${endin[$i]}
1319	else
1320	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1321	# REM-MASCHINE AUSWERTEN
1322	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1323	fi
1324
1325	# PRUEFEN AUF VORHANDENSEIN
1326	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1327	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1328	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1329	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1330	then
1331	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1332	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1333	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1334	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1335	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1336	if [[ "${transin[$i]}" != "locopt" ]]
1337	then
1338	printf "\n\n +++ INPUT-file: "
1339	if [[ "${extin[$i]}" = "" ]]
1340	then
1341	printf "\n $filename"
1342	else
1343	printf "\n $filename.${extin[$i]}"
1344	fi
1345	printf "\n does not exist\n"
1346	locat=input; exit
1347	else
1348	transin[$i]="unavailable"
1349	fi
1350	else
1351
1352	# ZYKLUSNUMMER FESTSTELLEN
1353	ls -1 -d $filename > filelist 2>/dev/null
1354	ls -1 -d $filename.* >> filelist 2>/dev/null
1355	while read zeile
1356	do
1357	cycle=$(print $zeile \| cut -f2 -d".")
1358	if [[ "$cycle" = "$zeile" ]]
1359	then
1360	(( icycle = 0 ))
1361	elif [[ "$cycle" = "${extin[$i]}" ]]
1362	then
1363	(( icycle = 0 ))
1364	else
1365	(( icycle = $cycle ))
1366	fi
1367	if (( icycle > maxcycle ))
1368	then
1369	(( maxcycle = icycle ))
1370	file_to_be_used=$zeile
1371	fi
1372	done <filelist
1373	rm filelist
1374
1375	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1376	if (( maxcycle > 0 ))
1377	then
1378	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1379	then
1380	filename=${filename}.$maxcycle.${extin[$i]}
1381	else
1382	filename=${filename}.$maxcycle
1383	fi
1384	else
1385	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1386	then
1387	filename=${filename}.${extin[$i]}
1388	fi
1389	fi
1390
1391	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1392	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1393	absnamein[$i]=$filename
1394	if (( maxcycle > 0 ))
1395	then
1396	if [[ "${actionin[$i]}" = di ]]
1397	then
1398	frelin[$i]=${endin[$i]}.$maxcycle
1399	else
1400	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1401	fi
1402	else
1403	if [[ "${actionin[$i]}" = di ]]
1404	then
1405	frelin[$i]=${endin[$i]}
1406	else
1407	frelin[$i]=${afname}${endin[$i]}
1408	fi
1409	fi
1410
1411	fi
1412	done
1413
1414
1415	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1416	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1417	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1418	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1419	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1420	(( i = 0 ))
1421	while (( i < iout ))
1422	do
1423	(( i = i + 1 ))
1424	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1425	then
1426	if [[ "${actionout[$i]}" = tr ]]
1427	then
1428	actionout[$i]=""
1429	elif [[ "${actionout[$i]}" = trpe ]]
1430	then
1431	actionout[$i]=pe
1432	elif [[ "${actionout[$i]}" = tra ]]
1433	then
1434	actionout[$i]=a
1435	fi
1436	(( maxcycle = 0 ))
1437	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1438	eval catalogname=${pathout[$i]}
1439	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1440	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1441	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1442	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1443	then
1444
1445	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1446	if cat /dev/null > $filename
1447	then
1448	rm $filename
1449	else
1450
1451	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1452	if [[ ! -d $catalogname ]]
1453	then
1454	if mkdir -p $catalogname
1455	then
1456	printf "\n\n *** directory:"
1457	printf "\n $catalogname"
1458	printf "\n was created\n"
1459	else
1460	printf "\n\n +++ OUTPUT-file:"
1461	printf "\n $filename"
1462	printf "\n cannot be created, because directory does not exist"
1463	printf "\n and cannot be created either"
1464	printf "\n"
1465	locat=output ; exit
1466	fi 2>/dev/null
1467	else
1468	printf "\n\n +++ OUTPUT-file:"
1469	printf "\n $filename"
1470	printf "\n cannot be created, although directory exists"
1471	printf "\n"
1472	locat=output ; exit
1473	fi
1474	fi 2>/dev/null
1475	else
1476
1477	# ZYKLUSNUMMER FESTSTELLEN
1478	ls -1 -d $filename > filelist 2>/dev/null
1479	ls -1 -d $filename.* >> filelist 2>/dev/null
1480	while read zeile
1481	do
1482	cycle=$(print $zeile \| cut -f2 -d".")
1483	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1484	then
1485	(( icycle = 1 ))
1486	else
1487	(( icycle = $cycle + 1 ))
1488	fi
1489	if (( icycle > maxcycle ))
1490	then
1491	(( maxcycle = icycle ))
1492	fi
1493	done <filelist
1494	rm filelist
1495	fi
1496
1497	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1498	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1499	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1500	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1501	if [[ "${actionout[$i]}" != a ]]
1502	then
1503	if (( maxcycle > 0 ))
1504	then
1505	filename=${filename}.$maxcycle
1506	if cat /dev/null > $filename
1507	then
1508	rm $filename
1509	else
1510	printf "\n +++ OUTPUT-file:"
1511	printf "\n $filename"
1512	printf "\n cannot be created"
1513	locat=output ; exit
1514	fi
1515	fi
1516	else
1517	(( maxcycle = maxcycle - 1 ))
1518	if (( maxcycle > 0 ))
1519	then
1520	filename=${filename}.$maxcycle
1521	fi
1522	fi
1523
1524	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1525	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1526	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1527	pathout[$i]=$filename
1528	if (( maxcycle > 0 ))
1529	then
1530	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1531	else
1532	frelout[$i]=${fname}${endout[$i]}
1533	fi
1534
1535	fi
1536	done
1537
1538
1539	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1540	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1541	then
1542	if [[ "$dvr_inc" = "" ]]
1543	then
1544	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1545	printf "\n This is required for the dvrp_graphics package.\n"
1546	locat=dvr; exit
1547	fi
1548	if [[ "$dvr_lib" = "" ]]
1549	then
1550	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1551	printf "\n This is required for the dvrp_graphics package.\n"
1552	locat=dvr; exit
1553	fi
1554	fi
1555
1556
1557	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1558	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1559	# UEBERSETZT ZU WERDEN)
1560	if [[ "$mainprog" = "" && "$executable" = "" ]]
1561	then
1562	printf "\n +++ neither main program nor executable defined"
1563	locat=source; exit
1564	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1565	then
1566	printf "\n +++ main program as well as executable defined"
1567	locat=source; exit
1568	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1569	then
1570	do_compile=false
1571	fi
1572
1573
1574	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1575	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1576	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1577	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1578	then
1579	rm -rf SOURCES_FOR_RUN_$fname
1580	mkdir SOURCES_FOR_RUN_$fname
1581	fi
1582
1583
1584	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1585	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1586	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1587	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1588	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1589	then
1590
1591	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1592	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1593
1594
1595	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1596	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1597	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1598	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1599	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1600	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1601	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1602	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1603	# GESAMMELT
1604	if [[ "$source_list" = WRITE_PERMIT ]]
1605	then
1606
1607	source_list=""
1608	cd $source_path
1609
1610
1611	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1612	Names=$(ls -1 *.f90 2>&1)
1613	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1614	Names=$(ls -1 *.F90 2>&1)
1615	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1616	Names=$(ls -1 *.F 2>&1)
1617	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1618	Names=$(ls -1 *.f 2>&1)
1619	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1620	Names=$(ls -1 *.c 2>&1)
1621	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1622
1623
1624	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1625	for dateiname in $Filenames
1626	do
1627	if [[ -w $dateiname ]]
1628	then
1629	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1630	then
1631	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1632	source_list=$source_list"$dateiname "
1633	fi
1634	fi
1635	done
1636
1637	cd - > /dev/null
1638
1639
1640	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1641	then
1642
1643	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1644	source_list=""
1645	cd $source_path
1646
1647
1648	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1649	if [[ ! -d .svn ]]
1650	then
1651	printf "\n\n +++ source directory"
1652	printf "\n \"$source_path\" "
1653	printf "\n is not under control of \"subversion\"."
1654	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1655	fi
1656
1657
1658	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1659	Filenames=""
1660	svn status > tmp_mrun
1661	while read line
1662	do
1663	firstc=`echo $line \| cut -c1`
1664	if [[ $firstc = M \|\| $firstc = "?" ]]
1665	then
1666	Name=`echo "$line" \| cut -c8-`
1667	extension=`echo $Name \| cut -d. -f2`
1668	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1669	then
1670	Filenames="$Filenames "$Name
1671	fi
1672	fi
1673	done < tmp_mrun
1674
1675
1676	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1677	for dateiname in $Filenames
1678	do
1679	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1680	source_list=$source_list"$dateiname "
1681	done
1682
1683	cd - > /dev/null
1684
1685
1686	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1687	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1688	# VORHANDEN
1689	elif [[ "$source_list" != "" && $restart_run != true ]]
1690	then
1691
1692	cd $source_path
1693
1694	for filename in $source_list
1695	do
1696
1697	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1698	if [[ $(print $filename \| grep -c "/") != 0 ]]
1699	then
1700	printf "\n +++ source code file: $filename"
1701	printf "\n must not contain (\"/\") "
1702	locat=source; exit
1703	fi
1704
1705	if [[ ! -f $filename ]]
1706	then
1707	printf "\n +++ source code file: $filename"
1708	printf "\n does not exist"
1709	locat=source; exit
1710	else
1711	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1712	fi
1713
1714	done
1715
1716	cd - > /dev/null
1717
1718	fi
1719
1720
1721	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1722	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1723	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1724	if [[ $restart_run != true ]]
1725	then
1726
1727	if [[ ! -f "$source_path/$mainprog" ]]
1728	then
1729	printf "\n\n +++ main program: $mainprog"
1730	printf "\n does not exist in source directory"
1731	printf "\n \"$source_path\"\n"
1732	locat=source; exit
1733	else
1734	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1735	then
1736	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1737	source_list=${mainprog}" $source_list"
1738	fi
1739	fi
1740	fi
1741
1742
1743	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1744	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1745	if [[ "$restart_run" != true ]]
1746	then
1747	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1748	if [[ ! -f $makefile ]]
1749	then
1750	printf "\n +++ file \"$makefile\" does not exist"
1751	locat=make; exit
1752	else
1753	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1754	fi
1755	fi
1756
1757
1758	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1759	if [[ $restart_run != true && "$add_source_path" != "" ]]
1760	then
1761
1762	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1763	if [[ ! -d $add_source_path ]]
1764	then
1765	printf "\n\n +++ WARNING: additional source code directory"
1766	printf "\n \"$add_source_path\" "
1767	printf "\n does not exist or is not a directory."
1768	printf "\n No source code will be used from this directory!\n"
1769	add_source_path=""
1770	sleep 3
1771	else
1772
1773	cd $add_source_path
1774	found=false
1775
1776	Names=$(ls -1 *.f90 2>&1)
1777	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1778	Names=$(ls -1 *.F90 2>&1)
1779	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1780	Names=$(ls -1 *.F 2>&1)
1781	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1782	Names=$(ls -1 *.f 2>&1)
1783	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1784	Names=$(ls -1 *.c 2>&1)
1785	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1786
1787	cd - > /dev/null
1788	cd SOURCES_FOR_RUN_$fname
1789
1790	# COPY MAKEFILE IF EXISTING
1791	if [[ -f $add_source_path/Makefile ]]
1792	then
1793	printf "\n\n *** user Makefile from directory"
1794	printf "\n \"$add_source_path\" is used \n"
1795	sleep 1
1796	cp $add_source_path/Makefile .
1797	fi
1798
1799	for dateiname in $AddFilenames
1800	do
1801	if [[ -f $dateiname ]]
1802	then
1803	printf "\n +++ source code file \"$dateiname\" found in additional"
1804	printf "\n source code directory \"$add_source_path\" "
1805	printf "\n but was also given with option \"-s\" which means that it should be taken"
1806	printf "\n from directory \"$source_path\"."
1807	locat=source; exit
1808	fi
1809
1810	cp $add_source_path/$dateiname .
1811	source_list="$source_list $dateiname"
1812
1813	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1814	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1815	then
1816	printf "\n\n +++ user file \"$dateiname\" "
1817	printf "\n is not listed in Makefile \n"
1818	locat=source; exit
1819	else
1820
1821	# Default User-Interface von der Liste entfernen, falls Datei
1822	# ein User-Interface enthaelt
1823	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1824	# then
1825	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1826	# then
1827	# rm -rf user_interface.f90
1828	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1829	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1830	# printf "\n since a user-interface is found in file"
1831	# printf "\n \"$add_source_path/$dateiname\" \n"
1832	# sleep 3
1833	# else
1834	if [[ $found = false ]]
1835	then
1836	found=true
1837	printf "\n\n *** following user file(s) added to the"
1838	printf " files to be translated:\n "
1839	fi
1840	printf "$dateiname "
1841	sleep 0.5
1842	fi
1843	done
1844	[[ $found = true ]] && printf "\n"
1845	cd - > /dev/null
1846	fi
1847	fi
1848
1849
1850	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1851	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1852	if [[ $restart_run != true && -n $package_list ]]
1853	then
1854
1855	cd $source_path
1856
1857	for package in $package_list
1858	do
1859
1860	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1861
1862	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1863	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1864	# LIEFERT
1865	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1866
1867
1868	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1869	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1870	for source_list_name in $package_source_list
1871	do
1872	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1873	then
1874
1875	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1876	ending=`echo $source_list_name \| cut -f2 -d.`
1877	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1878	then
1879	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1880	source_list="$source_list $source_list_name"
1881	fi
1882	fi
1883	done
1884	done
1885
1886	cd - > /dev/null
1887	fi
1888
1889
1890	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1891	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1892	# if [[ "$restart_run" != true ]]
1893	# then
1894	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1895	# if [[ ! -f $makefile ]]
1896	# then
1897	# printf "\n +++ file \"$makefile\" does not exist"
1898	# locat=make; exit
1899	# else
1900	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1901	# fi
1902	# fi
1903
1904	fi # do_compile=true
1905
1906
1907	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1908	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1909	if [[ $do_compile = true ]]
1910	then
1911
1912	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1913	# ZUSAMMENSETZEN
1914	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1915	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1916	then
1917	cpp_options="${cpp_options},-D__ibm=__ibm"
1918	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1919	then
1920	cpp_options="$cpp_options -D__nec"
1921	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1922	then
1923	cpp_options="$cpp_options -D__lc"
1924	else
1925	cpp_options="$cpp_options -D__$localhost"
1926	fi
1927
1928	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1929	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1930	then
1931	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1932	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1933	else
1934	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1935	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1936	fi
1937
1938	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1939	if [[ -n $package_list ]]
1940	then
1941	for package in $package_list
1942	do
1943	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1944	then
1945	if [[ $package != "dvrp_graphics+1PE" ]]
1946	then
1947	cpp_options="${cpp_options},-D__$package=__$package"
1948	else
1949	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1950	export use_seperate_pe_for_dvrp_output=true
1951	fi
1952	else
1953	if [[ $package != "dvrp_graphics+1PE" ]]
1954	then
1955	cpp_options="$cpp_options -D__$package"
1956	else
1957	cpp_options="$cpp_options -D__dvrp_graphics"
1958	export use_seperate_pe_for_dvrp_output=true
1959	fi
1960	fi
1961	done
1962	fi
1963
1964	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1965	if [[ -n $cpp_opts ]]
1966	then
1967	for popts in $cpp_opts
1968	do
1969	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1970	then
1971	cpp_options="${cpp_options},-D__$popts=__$popts"
1972	else
1973	cpp_options="$cpp_options -D__$popts"
1974	fi
1975	done
1976	fi
1977
1978	else
1979
1980
1981	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1982	if [[ $do_remote = false ]]
1983	then
1984	if [[ ! -f $executable ]]
1985	then
1986	printf "\n +++ executable file: $executable"
1987	printf "\n does not exist"
1988	locat=executable; exit
1989	fi
1990	fi
1991	fi
1992
1993
1994	# JOBMODUS FESTSTELLEN
1995	if [[ "$ENVIRONMENT" = BATCH ]]
1996	then
1997	jobmo=BATCH
1998	else
1999	jobmo=INTERACTIVE
2000	fi
2001
2002
2003	# no interactive runs on lctit
2004	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2005	then
2006	printf "\n +++ no interactive runs allowed on host \"$host\" "
2007	printf "\n please submit batch job using mrun option \"-b\" \n"
2008	locat=normal; exit
2009	fi
2010
2011
2012	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2013	# DURCH BENUTZER ANDERWEITIG VEREINBART
2014	if [[ "$compiler_name" = "" ]]
2015	then
2016
2017	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2018	locat=compiler_name; exit
2019
2020	fi
2021
2022
2023	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2024	[[ $localhost = necriam ]] && compiler_name=mpif90
2025
2026
2027
2028	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2029	kennung=$RANDOM
2030	if [[ "$tmp_user_catalog" = "" ]]
2031	then
2032	if [[ $localhost = ibmh ]]
2033	then
2034	tmp_user_catalog=$SCRATCH
2035	elif [[ $localhost = nech ]]
2036	then
2037	tmp_user_catalog=$WRKSHR
2038	else
2039	tmp_user_catalog=/tmp
2040	fi
2041	fi
2042	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2043
2044
2045	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2046	# BESTIMMEN
2047	if [[ "$tmp_data_catalog" = "" ]]
2048	then
2049	if [[ $localhost = nech ]]
2050	then
2051	tmp_data_catalog=$WRKSHR/mrun_restart_data
2052	else
2053	tmp_data_catalog=/tmp/mrun_restart_data
2054	fi
2055	fi
2056
2057
2058	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2059	# ERSETZEN
2060	if [[ $do_remote = false && $do_compile = true ]]
2061	then
2062	eval fopts=\"$fopts\"
2063	eval lopts=\"$lopts\"
2064	fi
2065
2066
2067
2068	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2069	fopts="$fopts $netcdf_inc $dvr_inc"
2070	lopts="$lopts $netcdf_lib $dvr_lib"
2071	ROPTS="$ropts"
2072	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2073	then
2074	XOPT="-X $numprocs"
2075	fi
2076
2077
2078
2079	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2080	# GRAMM BENOETIGT
2081	done=false
2082	while [[ $done = false ]]
2083	do
2084	cputime=$cpumax
2085	if (( $cputime == 0 ))
2086	then
2087	if [[ $do_batch = true ]]
2088	then
2089	printf "\n +++ cpu-time is undefined"
2090	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2091	printf "\n >>> "
2092	read cputime 1>/dev/null 2>&1
2093	else
2094	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2095	fi
2096	else
2097	done=true
2098	fi
2099	cpumax=$cputime
2100	done
2101
2102	(( minuten = cputime / 60 ))
2103	(( sekunden = cputime - minuten * 60 ))
2104
2105
2106	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2107	if [[ $do_batch = true ]]
2108	then
2109	done=false
2110	while [[ $done = false ]]
2111	do
2112	if (( memory == 0 ))
2113	then
2114	printf "\n +++ memory demand is undefined"
2115	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2116	printf "\n >>> "
2117	read memory 1>/dev/null 2>&1
2118	else
2119	done=true
2120	fi
2121	done
2122	fi
2123
2124
2125	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2126	if [[ $do_remote = true && -z $remote_username ]]
2127	then
2128	while [[ -z $remote_username ]]
2129	do
2130	printf "\n +++ username on remote host \"$host\" is undefined"
2131	printf "\n >>> Please type username:"
2132	printf "\n >>> "
2133	read remote_username
2134	done
2135	mc="$mc -u$remote_username"
2136	fi
2137
2138
2139	# set module load command and export for subjob
2140	if [[ "$modules" != "" ]]
2141	then
2142	if [[ $host = lctit ]]
2143	then
2144	export module_calls=". $modules"
2145	else
2146	export module_calls="module load ${modules};"
2147	fi
2148	fi
2149
2150	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2151	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2152	then
2153	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2154	then
2155	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2156	fi
2157	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2158	# then
2159	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2160	# echo "*** module_calls = $module_calls"
2161	# fi
2162	fi
2163
2164
2165	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2166	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2167	then
2168	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2169	then
2170	mpilib=mpt
2171	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2172	then
2173	mpilib=mvapich
2174	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2175	then
2176	mpilib=impi
2177	fi
2178	fi
2179
2180
2181
2182	###########################################################################
2183	# HEADER-AUSGABE
2184	###########################################################################
2185
2186
2187	calltime=$(date)
2188	printf "\n"
2189	# [[ $silent = false ]] && clear
2190	printf "#--------------------------------------------------------------# \n"
2191	printf "\| $version$calltime \| \n"
2192	printf "\| \| \n"
2193	spalte1="called on:"; spalte2=$localhost_realname
2194	printf "\| $spalte1$spalte2 \| \n"
2195	if [[ $local_compile = false ]]
2196	then
2197	if [[ $do_remote = true ]]
2198	then
2199	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2200	else
2201	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2202	fi
2203	else
2204	spalte1="compiling test only!"; spalte2=""
2205	fi
2206	printf "\| $spalte1$spalte2 \| \n"
2207	if [[ -n $numprocs ]]
2208	then
2209	spalte1="number of PEs:"; spalte2=$numprocs
2210	printf "\| $spalte1$spalte2 \| \n"
2211	fi
2212	if [[ -n $tasks_per_node ]]
2213	then
2214	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2215	printf "\| $spalte1$spalte2 \| \n"
2216	fi
2217	if [[ $maximum_parallel_io_streams != $numprocs ]]
2218	then
2219	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2220	printf "\| $spalte1$spalte2 \| \n"
2221	fi
2222	if [[ $use_openmp = true ]]
2223	then
2224	spalte1="threads per task:"; spalte2="$threads_per_task"
2225	printf "\| $spalte1$spalte2 \| \n"
2226	fi
2227	printf "\| \| \n"
2228	if [[ $do_compile = true ]]
2229	then
2230	if [[ "$mopts" != "" ]]
2231	then
2232	spalte1="make options:"; spalte2=$mopts
2233	printf "\| $spalte1$spalte2 \| \n"
2234	zeile=$(echo "$mopts" \| cut -c41-)
2235	while [[ "$zeile" != "" ]]
2236	do
2237	spalte1=""
2238	spalte2=$zeile
2239	printf "\| $spalte1$spalte2 \| \n"
2240	zeile=$(echo "$zeile" \| cut -c41-)
2241	done
2242	fi
2243
2244	spalte1="cpp directives:"; spalte2=$cpp_options
2245	printf "\| $spalte1$spalte2 \| \n"
2246	zeile=$(echo "$cpp_options" \| cut -c41-)
2247	while [[ "$zeile" != "" ]]
2248	do
2249	spalte1=""
2250	spalte2=$zeile
2251	printf "\| $spalte1$spalte2 \| \n"
2252	zeile=$(echo "$zeile" \| cut -c41-)
2253	done
2254
2255	spalte1="compiler options:"; spalte2="$fopts"
2256	printf "\| $spalte1$spalte2 \| \n"
2257	zeile=$(echo "$fopts" \| cut -c41-)
2258	while [[ "$zeile" != "" ]]
2259	do
2260	spalte1=""
2261	spalte2=$zeile
2262	printf "\| $spalte1$spalte2 \| \n"
2263	zeile=$(echo "$zeile" \| cut -c41-)
2264	done
2265
2266	spalte1="linker options:"; spalte2=$lopts
2267	printf "\| $spalte1$spalte2 \| \n"
2268	zeile=$(echo "$lopts" \| cut -c41-)
2269	while [[ "$zeile" != "" ]]
2270	do
2271	spalte1=""
2272	spalte2=$zeile
2273	printf "\| $spalte1$spalte2 \| \n"
2274	zeile=$(echo "$zeile" \| cut -c41-)
2275	done
2276
2277	spalte1="modules to be load:"; spalte2=$modules
2278	printf "\| $spalte1$spalte2 \| \n"
2279	zeile=$(echo "$modules" \| cut -c41-)
2280	while [[ "$zeile" != "" ]]
2281	do
2282	spalte1=""
2283	spalte2=$zeile
2284	printf "\| $spalte1$spalte2 \| \n"
2285	zeile=$(echo "$zeile" \| cut -c41-)
2286	done
2287
2288	spalte1="main program":; spalte2=$mainprog
2289	printf "\| $spalte1$spalte2 \| \n"
2290	else
2291	spalte1=executable:; spalte2=$executable
2292	printf "\| $spalte1$spalte2 \| \n"
2293	fi
2294	printf "\| \| \n"
2295	spalte1="base name of files":; spalte2=$fname
2296	printf "\| $spalte1$spalte2 \| \n"
2297	if [[ $fname != $afname ]]
2298	then
2299	spalte1="base name of input files":; spalte2=$afname
2300	printf "\| $spalte1$spalte2 \| \n"
2301	fi
2302	spalte1="INPUT control list":; spalte2=$input_list
2303	printf "\| $spalte1$spalte2 \| \n"
2304	spalte1="OUTPUT control list":; spalte2=$output_list
2305	printf "\| $spalte1$spalte2 \| \n"
2306
2307	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2308	then
2309	spalte1="memory demand / PE":; spalte2="$memory MB"
2310	printf "\| $spalte1$spalte2 \| \n"
2311	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2312	printf "\| $spalte1$spalte2 \| \n"
2313	fi
2314
2315	if [[ $do_compile = true ]]
2316	then
2317	printf "\| \| \n"
2318	printf "\| Files to be compiled: \| \n"
2319	zeile=$source_list
2320	while [[ "$zeile" != "" ]]
2321	do
2322	spalte3=$zeile
2323	printf "\| $spalte3 \| \n"
2324	zeile=$(echo "$zeile" \| cut -c61-)
2325	done
2326	fi
2327	printf "#--------------------------------------------------------------#"
2328
2329
2330
2331	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2332	if [[ $do_trace = true ]]
2333	then
2334	(( i = 0 ))
2335	while (( i < iin ))
2336	do
2337	(( i = i + 1 ))
2338	if (( i == 1 ))
2339	then
2340	printf "\n\n >>> INPUT-file assignments:\n"
2341	fi
2342	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2343	done
2344	(( i = 0 ))
2345	while (( i < iout ))
2346	do
2347	(( i = i + 1 ))
2348	if (( i == 1 ))
2349	then
2350	printf "\n\n >>> OUTPUT-file assignments:\n"
2351	fi
2352	printf "\n ${localout[$i]} : ${pathout[$i]}"
2353	done
2354	(( i = 0 ))
2355	while (( i < iic ))
2356	do
2357	(( i = i + 1 ))
2358	if (( i == 1 ))
2359	then
2360	printf "\n\n >>> INPUT-commands:\n"
2361	fi
2362	printf "\n ${in_command[$i]}"
2363	done
2364	(( i = 0 ))
2365	while (( i < ioc ))
2366	do
2367	(( i = i + 1 ))
2368	if (( i == 1 ))
2369	then
2370	printf "\n\n >>> OUTPUT-commands:\n"
2371	fi
2372	printf "\n ${out_command[$i]}"
2373	done
2374	fi
2375
2376
2377	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2378	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2379	then
2380	antwort=dummy
2381	printf "\n\n"
2382	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2383	do
2384	printf " >>> everything o.k. (y/n) ? "
2385	read antwort
2386	done
2387	if [[ $antwort = n \|\| $antwort = N ]]
2388	then
2389	locat=user_abort; (( iec = 0 )); exit
2390	fi
2391	if [[ $do_batch = true ]]
2392	then
2393	printf " >>> batch-job will be created and submitted"
2394	else
2395	if [[ $local_compile = false ]]
2396	then
2397	printf " >>> MRUN will now continue to execute on this machine"
2398	else
2399	printf " >>> a test compilation will now be carried out on this machine"
2400	fi
2401	fi
2402	fi
2403
2404	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2405	if [[ $check_namelist_files == true && $fromhost == $localhost && $run_coupled_model == false ]]
2406	then
2407	if [[ $ocean_file_appendix == true ]]
2408	then
2409	d3par_string="d3o#"
2410	d3fpar_string="d3of"
2411	else
2412	d3par_string="d3#"
2413	d3fpar_string="d3f"
2414	fi
2415
2416	tmp_check=${working_directory}/tmp_check
2417
2418	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2419	line=""
2420	found=false
2421	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2422	while read line1
2423	do
2424	line="$line1"
2425	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2426	then
2427	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2428	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2429	found=true
2430	fi
2431	done < $tmp_check
2432
2433	if [[ $found = false ]]
2434	then
2435	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2436
2437	locat=check_namelist; exit
2438	fi
2439
2440	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2441	# NOT NECESSARILY REQUIRED
2442	line=""
2443	found=false
2444	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2445	while read line1
2446	do
2447	line="$line1"
2448	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2449	then
2450	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2451	found=true
2452	fi
2453	done < $tmp_check
2454
2455	if [[ $found = false ]]
2456	then
2457	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2458	fi
2459
2460	rm -rf ${working_directory}/tmp_check
2461
2462	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2463	check_depository="${working_directory}/trunk/UTIL"
2464	check_sources="${working_directory}/tmp_check_namelist_files"
2465
2466	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2467	for item in $input_list
2468	do
2469	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2470	then
2471	check_restart=1
2472	else
2473	check_restart=0
2474	fi
2475	done
2476
2477	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2478	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2479	then
2480	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2481	locat=check_namelist; exit
2482	fi
2483
2484	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2485	if [[ $check_restart == 1 ]]
2486	then
2487	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2488	then
2489	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2490	check_restart=0
2491	answer=dummy
2492	printf "\n\n"
2493
2494	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2495	do
2496	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2497	read answer
2498	done
2499	if [[ $answer = a \|\| $answer = A ]]
2500	then
2501	printf "\n +++ Aborting...."
2502	locat=normal; exit
2503	fi
2504	else
2505	check_restart=1
2506	fi
2507	fi
2508
2509	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2510	mkdir $check_sources
2511	cd $check_sources
2512
2513	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2514	if [[ -d $working_directory/USER_CODE/$fname ]]
2515	then
2516	printf "\n\n *** copying files from $check_depository"
2517	cp $check_depository/check_namelist_files.tar ./
2518
2519	printf "\n\n *** untar of makefile and source files in $check_sources"
2520	tar -xf check_namelist_files.tar > /dev/null 2>&1
2521
2522	printf "\n\n *** adding user code."
2523	cp $working_directory/USER_CODE/$fname/* ./
2524	touch check_namelist_files.f90
2525
2526	# GET COMPILER OPTIONS AND PERFORM MAKE
2527	printf "\n\n *** compiling code if necessary...\n"
2528	copts_check="-cpp -D_parallel -D__check"
2529	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2530
2531	# GET MAKE OUTPUT
2532	if [[ $? != 0 ]]
2533	then
2534	rm -rf $check_sources
2535	locat=check_namelist; exit
2536	fi
2537	else
2538	cp $PALM_BIN/check_namelist_files.x ./
2539	fi
2540
2541	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2542	if [[ $check_restart == 1 ]]
2543	then
2544	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2545	fi
2546
2547	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2548	cat > ENVPAR << %%END%%
2549	&envpar run_identifier = '$fname', host = '$localhost',
2550	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2551	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2552	maximum_cpu_time_allowed = ${cpumax}.,
2553	revision = '$global_revision',
2554	local_dvrserver_running = $local_dvrserver_running /
2555
2556	%%END%%
2557
2558	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2559	if [[ ! -f check_namelist_files.x ]] then
2560	printf "\n +++ WARNING: check_namelist_files.x not found."
2561	answer=dummy
2562	printf "\n\n"
2563	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2564	do
2565	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2566	read answer
2567	done
2568	if [[ $answer = a \|\| $answer = A ]]
2569	then
2570	printf "\n +++ Aborting..."
2571	rm -rf $check_sources
2572	locat=normal; exit
2573	else
2574	printf "\n *** Skipping parameter file check."
2575	fi
2576	else
2577	# STARTING THE PARAMETER FILE CHECK
2578	printf "\n\n *** starting parameter file check..."
2579
2580	# CHECKING THE P3D FILE
2581	printf "\n\n (1) checking $fname$p3d_suffix"
2582	echo "$numprocs 0" > VARIN
2583	errors=`./check_namelist_files.x < VARIN 2>&1`
2584
2585	check_error=false
2586	if [[ "$errors" == "" ]]
2587	then
2588	printf " --> o.k."
2589	else
2590	printf " --> failed."
2591	check_error=true
2592	printf "\n\n $errors"
2593	fi
2594
2595	# CHECKING THE PD3F FILE IF NECESSARY
2596	if [[ $check_restart == 1 && $check_error == false ]]
2597	then
2598	printf "\n\n (2) checking $fname$p3df_suffix"
2599
2600	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2601	found=false
2602	cat PARINF\|while read line
2603	do
2604	line=$(echo $line\|sed 's/ //g')
2605	if [[ $line == "&inipar" ]]
2606	then
2607	start_search=true
2608	fi
2609
2610	if [[ $start_search == true ]]
2611	then
2612	if [[ $line == "initializing_actions='read_restart_data'" ]]
2613	then
2614	found=true
2615	break
2616	fi
2617	fi
2618
2619	if [[ $line == "/" ]]
2620	then
2621	start_search=false
2622	fi
2623
2624	done
2625
2626	if [[ $found = false ]]
2627	then
2628	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2629	printf "\n in &inipar list in $fname$p3df_suffix."
2630	rm -rf $check_sources
2631	locat=check_namelist; exit
2632	fi
2633
2634	echo "$numprocs 1" > VARIN
2635	errors=`./check_namelist_files.x < VARIN 2>&1`
2636
2637	if [[ "$errors" == "" ]]
2638	then
2639	printf " --> o.k."
2640	else
2641	printf " --> failed."
2642	check_error=true
2643	printf "\n\n $errors"
2644	fi
2645	fi
2646
2647	# REPORT ERRORS AND CONTINUE/EXIT
2648	if [[ $check_error == true ]]
2649	then
2650	printf "\n +++ errors found in the parameter file!\n"
2651	answer=dummy
2652	printf "\n\n"
2653
2654	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2655	do
2656	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2657	read answer
2658	done
2659
2660	if [[ $answer = a \|\| $answer = A ]]
2661	then
2662	printf "\n +++ Aborting..."
2663	rm -rf $check_sources
2664	locat=normal; exit
2665	fi
2666	else
2667	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2668	fi
2669	rm -rf $check_sources
2670	fi
2671	else
2672	printf "\n\n +++ skipping parameter file check\n"
2673	fi
2674
2675	cd $working_directory
2676
2677	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2678	# CHENDE AKTIONEN DURCHGEFUEHRT
2679	if [[ $do_batch = false ]]
2680	then
2681
2682
2683	# TEMPORAEREN KATALOG ERZEUGEN
2684	mkdir -p $TEMPDIR
2685	chmod go+rx $TEMPDIR
2686	tmpcreate=true
2687
2688	# set striping on lustre file system
2689	# if [[ $localhost = lcsgih ]]
2690	# then
2691	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2692	# lfs getstripe $TEMPDIR
2693	# fi
2694
2695
2696	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2697	# TEMPORAERES VERZEICHNIS KOPIEREN
2698	if [[ $do_compile = true ]]
2699	then
2700
2701	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2702	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2703	if [[ $localhost = nech ]]
2704	then
2705	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2706	if mkdir -p $TEMPDIR_COMPILE
2707	then
2708	printf "\n *** \"$TEMPDIR_COMPILE\" "
2709	printf "\n is generated as temporary directory for cross compiling\n"
2710	else
2711	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2712	printf "\n needed for cross compilation failed"
2713	locat=compile
2714	exit
2715	fi
2716	else
2717	TEMPDIR_COMPILE=$TEMPDIR
2718	fi
2719
2720
2721	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2722	line=""
2723	grep "%depository_path" $config_file > tmp_mrun
2724	while read line
2725	do
2726	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2727	then
2728	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2729	then
2730	global_depository_path=`echo $line \| cut -d" " -s -f2`
2731	fi
2732	fi
2733	done < tmp_mrun
2734
2735	line=""
2736	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2737	while read line
2738	do
2739	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2740	then
2741	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2742	then
2743	local_depository_path=`echo $line \| cut -d" " -s -f2`
2744	fi
2745	fi
2746	done < tmp_mrun
2747
2748	if [[ "$local_depository_path" = "" ]]
2749	then
2750	if [[ "$global_depository_path" != "" ]]
2751	then
2752	local_depository_path=$global_depository_path
2753	else
2754	printf "\n\n +++ no depository path found in configuration file"
2755	printf "\n for local host \"$localhost\" "
2756	printf "\n please set \"\%depository_path\" in configuration file\n"
2757	locat=config_file; exit
2758	fi
2759	fi
2760	eval local_depository_path=$local_depository_path
2761	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2762	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2763
2764
2765	basename=`print $mainprog \| cut -f1 -d"."`
2766	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2767	if [[ ! -f $make_depository ]]
2768	then
2769	printf "\n"
2770	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2771	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2772	else
2773	cp $make_depository $TEMPDIR_COMPILE
2774	cd $TEMPDIR_COMPILE
2775	tar -xf $make_depository > /dev/null 2>&1
2776	cd - > /dev/null
2777	fi
2778
2779	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2780
2781	else
2782
2783	cp $executable ${TEMPDIR}/a.out
2784
2785	fi
2786
2787
2788	# WECHSEL IN TEMPORAEREN KATALOG
2789	cd $TEMPDIR
2790	printf "\n *** changed to temporary directory: $TEMPDIR"
2791
2792
2793	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2794	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2795	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2796	# ERMITTELN
2797	(( i = 0 ))
2798	while (( i < iout ))
2799	do
2800	(( i = i + 1 ))
2801	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2802	then
2803	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2804	else
2805	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2806	fi
2807	done
2808
2809
2810	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2811	if [[ $do_compile = true ]]
2812	then
2813
2814
2815	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2816	printf "\n\n\n *** compilation starts \n$striche\n"
2817	printf " *** compilation with make using following options:\n"
2818	printf " make depository: $make_depository"
2819	if [[ "$mopts" != "" ]]
2820	then
2821	printf " make options: $mopts\n"
2822	fi
2823	printf " compilername: $compiler_name\n"
2824	printf " compiler options: $fopts\n"
2825	printf " preprocessor directives: $cpp_options \n"
2826	printf " linker options: $lopts \n"
2827	if [[ "$modules" != "" ]]
2828	then
2829	printf " modules to be load: $modules \n"
2830	fi
2831	printf " source code files: $source_list \n"
2832
2833	if [[ $localhost = nech ]]
2834	then
2835	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2836	cp $TEMPDIR_COMPILE/a.out .
2837	[[ $? != 0 ]] && compile_error=true
2838	rm -rf $TEMPDIR_COMPILE
2839	elif [[ $localhost = ibmh ]]
2840	then
2841	printf " compiler is called via ssh on \"plogin1\" \n"
2842	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2843	[[ ! -f a.out ]] && compile_error=true
2844	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2845	elif [[ $localhost = lcsgib ]]
2846	then
2847	printf " compiler is called via ssh on \"bicegate0\" \n"
2848	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2849	[[ ! -f a.out ]] && compile_error=true
2850	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2851	elif [[ $localhost = lcsgih ]]
2852	then
2853	printf " compiler is called via ssh on \"hicegate0\" \n"
2854	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2855	[[ ! -f a.out ]] && compile_error=true
2856	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2857	elif [[ $localhost = lcflow ]]
2858	then
2859	printf " compiler is called via ssh on \"flow\" \n"
2860	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2861	[[ ! -f a.out ]] && compile_error=true
2862	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2863	else
2864	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2865	[[ "$module_calls" != "" ]] && eval $module_calls
2866	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2867
2868	fi
2869
2870	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2871	then
2872	printf "\n +++ error occured while compiling or linking"
2873	locat=compile
2874
2875	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2876	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2877	# then
2878	exit
2879	# else
2880	# locat=normal
2881	# fi
2882	else
2883	printf "$striche\n *** compilation finished \n"
2884	fi
2885	fi
2886
2887
2888	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2889	if [[ $local_compile = true ]]
2890	then
2891	cd $HOME
2892	rm -rf $TEMPDIR
2893	locat=local_compile; exit
2894	fi
2895
2896
2897	# BEREITSTELLEN DER INPUT-DATEIEN
2898	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2899	(( i = 0 ))
2900	while (( i < iin ))
2901	do
2902	(( i = i + 1 ))
2903	if (( i == 1 ))
2904	then
2905	printf "\n\n *** providing INPUT-files:\n$striche"
2906	fi
2907
2908
2909	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2910	if [[ "${transin[$i]}" = unavailable ]]
2911	then
2912	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2913	then
2914	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2915	printf "\n is not available!"
2916	else
2917	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2918	printf "\n is not available!"
2919	fi
2920	continue
2921	fi
2922
2923	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2924	files_for_pes=false; datentyp=file
2925	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2926	then
2927	files_for_pes=true; datentyp=directory
2928	actionin[$i]=""
2929	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2930	then
2931	actionin[$i]=""
2932	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2933	then
2934	files_for_pes=true; datentyp=directory
2935	actionin[$i]="ar"
2936	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2937	then
2938	actionin[$i]="ar"
2939	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2940	then
2941	files_for_pes=true; datentyp=directory
2942	actionin[$i]="fl"
2943	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2944	then
2945	actionin[$i]="fl"
2946	fi
2947
2948	if [[ $files_for_pes = true ]]
2949	then
2950	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2951	else
2952	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2953	fi
2954
2955	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2956	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2957	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2958	# SERVER ZU HOLEN
2959	if [[ "${actionin[$i]}" = fl ]]
2960	then
2961	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2962	if [[ $files_for_pes = false ]]
2963	then
2964	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2965	then
2966	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2967	got_tmp[$i]=true
2968	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2969	then
2970	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2971	printf "\n *** trying to use backup copy in \"$WORK\" "
2972	cp $WORK/${frelin[$i]} ${localin[$i]}
2973	else
2974	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2975	printf "\n or \"$tmp_data_catalog\" does not exist!"
2976	printf "\n *** trying to get copy from archive"
2977	actionin[$i]=ar
2978	fi
2979	else
2980	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2981	then
2982	mkdir ${localin[$i]}
2983	cd $tmp_data_catalog/${frelin[$i]}
2984	for file in $(ls *)
2985	do
2986	ln $file $TEMPDIR/${localin[$i]}
2987	done
2988	cd $TEMPDIR
2989	got_tmp[$i]=true
2990	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2991	then
2992	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2993	printf "\n *** trying to use backup copy in \"$WORK\" "
2994	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2995	else
2996	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2997	printf "\n or \"$tmp_data_catalog\" does not exist!"
2998	printf "\n *** trying to get copy from archive"
2999	actionin[$i]=ar
3000	fi
3001	fi
3002	fi
3003
3004
3005	# DATEI LIEGT AUF ARCHIV-SERVER
3006	if [[ "${actionin[$i]}" = ar ]]
3007	then
3008
3009	if [[ $files_for_pes = false ]]
3010	then
3011	printf "\n file will be restored from archive-system ($archive_system)!"
3012	else
3013	printf "\n directory will be restored from archive-system ($archive_system)!"
3014	fi
3015
3016	file_restored=false
3017
3018	if [[ $archive_system = asterix ]]
3019	then
3020	do_stagein=true
3021	(( stagein_anz = 0 ))
3022	while [[ $do_stagein = true ]]
3023	do
3024	if [[ $files_for_pes = false ]]
3025	then
3026	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3027	else
3028	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3029	fi
3030	cat STAGEIN_OUTPUT
3031	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3032	then
3033	file_restored=true
3034	do_stagein=false
3035	else
3036	(( stagein_anz = stagein_anz + 1 ))
3037	if (( stagein_anz == 10 ))
3038	then
3039	printf "\n +++ stagein stoped after 10 tries"
3040	locat=stage
3041	exit
3042	fi
3043	printf "\n +++ restoring from archive failed, trying again:"
3044	sleep 900
3045	fi
3046	done
3047	elif [[ $archive_system = DMF ]]
3048	then
3049	if [[ $files_for_pes = false ]]
3050	then
3051	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3052	locat=DMF
3053	exit
3054	else
3055	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3056	cp -r $ARCHIVE/${frelin[$i]} $PWD
3057	file_restored=true
3058	fi
3059	elif [[ $archive_system = tivoli ]]
3060	then
3061	if [[ $files_for_pes = false ]]
3062	then
3063	if [[ $localhost = lcsgih ]]
3064	then
3065	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3066	else
3067	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3068	fi
3069	else
3070	(( inode = 0 ))
3071	while (( inode < nodes ))
3072	do
3073	if [[ $localhost = lcsgih ]]
3074	then
3075	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3076	else
3077	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3078	fi
3079	(( inode = inode + 1 ))
3080	done
3081	fi
3082	file_restored=true
3083	elif [[ $archive_system = ut ]]
3084	then
3085	if [[ $files_for_pes = false ]]
3086	then
3087	cp $UT/${frelin[$i]} .
3088	else
3089	(( inode = 0 ))
3090	while (( inode < nodes ))
3091	do
3092	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3093	(( inode = inode + 1 ))
3094	done
3095	fi
3096	file_restored=true
3097	else
3098	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3099	locat=rearchive
3100	exit
3101	fi
3102
3103	if [[ $file_restored = true ]]
3104	then
3105
3106	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3107	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3108	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3109	if [[ $files_for_pes = false ]]
3110	then
3111	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3112	else
3113	mkdir $tmp_data_catalog/${frelin[$i]}
3114	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3115	fi
3116	got_tmp[$i]=true
3117
3118	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3119	mv ${frelin[$i]} ${localin[$i]}
3120
3121	fi
3122	fi
3123
3124
3125	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3126	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3127	then
3128
3129	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3130	then
3131
3132	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3133	printf "\n file will be provided for $numprocs processors"
3134	mkdir ${localin[$i]}
3135	ival=$numprocs
3136	(( ii = 0 ))
3137	while (( ii <= ival-1 ))
3138	do
3139	if (( ii < 10 ))
3140	then
3141	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3142	elif (( ii < 100 ))
3143	then
3144	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3145	elif (( ii < 1000 ))
3146	then
3147	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3148	else
3149	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3150	fi
3151	(( ii = ii + 1 ))
3152	done
3153
3154	else
3155
3156	if [[ $files_for_pes = true ]]
3157	then
3158
3159	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3160	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3161	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3162	# PER MOVE UMBENANNT WERDEN
3163	printf "\n providing $numprocs files for the respective processors"
3164	mkdir ${localin[$i]}
3165	if [[ $link_local_input = true ]]
3166	then
3167	printf " using ln -f\n"
3168	cd ${absnamein[$i]}
3169	for file in $(ls *)
3170	do
3171	ln -f $file ${localin[$i]}
3172	done
3173	cd $TEMPDIR
3174	fi
3175	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3176	if [[ ! -f "${localin[$i]}/_0000" ]]
3177	then
3178	if [[ $link_local_input = true ]]
3179	then
3180	printf " ln failed for .../_0000, using cp...\n"
3181	fi
3182	cp -r ${absnamein[$i]}/* ${localin[$i]}
3183	fi
3184
3185	else
3186	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3187	if [[ $link_local_input = true ]]
3188	then
3189	printf " using ln -f\n"
3190	ln -f ${absnamein[$i]} ${localin[$i]}
3191	fi
3192	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3193	if [[ ! -f "${localin[$i]}" ]]
3194	then
3195	if [[ $link_local_input = true ]]
3196	then
3197	printf " ln failed, using cp...\n"
3198	fi
3199	cp ${absnamein[$i]} ${localin[$i]}
3200	fi
3201	fi
3202	fi
3203	fi
3204
3205	done
3206	if (( i != 0 ))
3207	then
3208	printf "\n$striche\n *** all INPUT-files provided \n"
3209	fi
3210
3211
3212	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3213	(( i = 0 ))
3214	while (( i < iic ))
3215	do
3216	(( i = i + 1 ))
3217	if (( i == 1 ))
3218	then
3219	printf "\n\n *** execution of INPUT-commands:\n$striche"
3220	fi
3221	printf "\n >>> ${in_command[$i]}"
3222	eval ${in_command[$i]}
3223	if (( i == iic ))
3224	then
3225	printf "\n$striche\n"
3226	fi
3227	done
3228
3229
3230	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3231	cpurest=${cpumax}.
3232
3233
3234	# START DVR STREAMING SERVER
3235	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3236	then
3237	if [[ "$dvr_server" != "" ]]
3238	then
3239
3240	printf "\n\n *** preparing the dvr streaming server configuration file"
3241
3242	# Check, if a dvr server is already running
3243	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3244	if [[ "$running_dvrserver_id" != "" ]]
3245	then
3246
3247	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3248	printf "\n This server is used instead starting a new one!"
3249	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3250
3251	else
3252
3253	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3254	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3255	then
3256	cp ${PALM_BIN}/.dvrserver.config .
3257
3258	# Entering the BASEDIR, UID and GID into this file
3259	user_id=`id -u`
3260	group_id=`id -g`
3261	# & is needed as seperator, because TEMPDIR contains /
3262	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3263	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3264	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3265	mv .dvrserver.3 .dvrserver.config
3266	rm .dvrserver.1 .dvrserver.2
3267
3268	# Start dvr server in background, get his id and print on terminal
3269	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3270	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3271	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3272	local_dvrserver_running=.TRUE.
3273	else
3274	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3275	printf "\n \"$PALM_BIN\" "
3276	locat=dvr
3277	exit
3278	fi
3279
3280	fi
3281
3282	else
3283	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3284	fi
3285	fi
3286
3287
3288	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3289	# LESEN VON PALM)
3290	cat > ENVPAR << %%END%%
3291	&envpar run_identifier = '$fname', host = '$localhost',
3292	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3293	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3294	maximum_cpu_time_allowed = ${cpumax}.,
3295	revision = '$global_revision',
3296	local_dvrserver_running = $local_dvrserver_running /
3297
3298	%%END%%
3299
3300
3301	# PROGRAMMSTART
3302	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3303	PATH=$PATH:$TEMPDIR
3304
3305	# MPI debug option (argument checking, slows down execution due to increased latency)
3306	if [[ "$mpi_debug" = true ]]
3307	then
3308	export MPI_CHECK_ARGS=1
3309	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3310	fi
3311
3312	if [[ "$totalview" = true ]]
3313	then
3314	printf "\n *** totalview debugger will be used"
3315	tv_opt="-tv"
3316	else
3317	tv_opt=""
3318	fi
3319
3320	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3321	then
3322	if [[ "$ENVIRONMENT" = BATCH ]]
3323	then
3324	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3325	then
3326	printf "\n +++ debug is allowed in interactive mode only"
3327	locat=debug
3328	exit
3329	fi
3330	fi
3331	if [[ $localhost = decalpha ]]
3332	then
3333	dxladebug a.out
3334	elif [[ $localhost = ibmh ]]
3335	then
3336
3337	# SETUP THE IBM MPI ENVIRONMENT
3338	export MP_SHARED_MEMORY=yes
3339	export AIXTHREADS_SCOPE=S
3340	export OMP_NUM_THREADS=$threads_per_task
3341	export AUTHSTATE=files
3342	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3343
3344	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3345	export MP_ADAPTER_USE=shared
3346	export MP_CPU_USE=multiple
3347	export MP_TIMEOUT=1200
3348
3349	unset MP_TASK_AFFINITY
3350
3351	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3352	#(( ii = 1 ))
3353	#while (( ii <= $numprocs ))
3354	#do
3355	# echo $localhost_realname >> hostfile
3356	# (( ii = ii + 1 ))
3357	#done
3358	#export MP_HOSTFILE=hostfile
3359
3360	if [[ "$LOADLBATCH" = yes ]]
3361	then
3362	totalview poe a.out $ROPTS
3363	else
3364	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3365	export TVDSVRLAUNCHCMD=ssh
3366	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3367	fi
3368	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3369	then
3370	# CURRENTLY NO DEBUGGER ON LCSGI
3371	if [[ $run_coupled_model = true ]]
3372	then
3373	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3374	locat=debug
3375	exit
3376	else
3377	echo "no_coupling" > runfile_atmos
3378	fi
3379	(( ii = $numprocs / $threads_per_task ))
3380	export OMP_NUM_THREADS=$threads_per_task
3381	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3382	if [[ $threads_per_task != 1 ]]
3383	then
3384	printf "\n threads per task: $threads_per_task"
3385	fi
3386	printf "\n\n"
3387	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3388	then
3389	# export MPI_LAUNCH_TIMEOUT=360
3390	if [[ "$totalview" = true ]]
3391	then
3392	printf "\n running totalview debugger"
3393	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3394	else
3395	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3396	fi
3397	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3398	then
3399	# ulimit -s 300000 # A too large stack size causes problems
3400	# export MV2_NUM_PORTS=2
3401	# export MV2_CPU_MAPPING=0:1:2:3
3402	if [[ "$totalview" = true ]]
3403	then
3404	printf "\n running totalview debugger"
3405	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3406	else
3407	mpiexec ./a.out $ROPTS < runfile_atmos
3408	fi
3409	fi
3410	else
3411	printf "\n +++ no debug available on \"$localhost\" "
3412	printf "\n or not implemented in mrun so far"
3413	locat=debug
3414	exit
3415	fi
3416
3417	# end debug mode
3418	else
3419
3420	# normal execution
3421	if [[ -n $numprocs ]]
3422	then
3423	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3424	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3425	then
3426	# SETUP THE IBM MPI ENVIRONMENT
3427	if [[ $host != ibmh && $host != ibmkisti ]]
3428	then
3429	export MP_SHARED_MEMORY=yes
3430	export AIXTHREAD_SCOPE=S
3431	export OMP_NUM_THREADS=$threads_per_task
3432	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3433	export AUTHSTATE=files
3434	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3435	# export MP_PRINTENV=yes
3436
3437	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3438	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3439	export MP_WAIT_MODE=poll
3440	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3441	fi
3442
3443	if [[ $host = ibmkisti ]]
3444	then
3445	export LANG=en_US
3446	export MP_SHARED_MEMORY=yes
3447	if [[ $threads_per_task = 1 ]]
3448	then
3449	export MP_SINGLE_THREAD=yes
3450	export MEMORY_AFFINITY=MCM
3451	else
3452	export OMP_NUM_THREADS=$threads_per_task
3453	fi
3454	fi
3455
3456	if [[ "$LOADLBATCH" = yes ]]
3457	then
3458	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3459	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3460	then
3461	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3462	else
3463	if [[ $run_coupled_model = false ]]
3464	then
3465	if [[ "$ocean_file_appendix" = true ]]
3466	then
3467	echo "precursor_ocean" > runfile_atmos
3468	else
3469	echo "precursor_atmos" > runfile_atmos
3470	fi
3471	else
3472	(( iia = $numprocs_atmos / $threads_per_task ))
3473	(( iio = $numprocs_ocean / $threads_per_task ))
3474	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3475	printf "\n using $coupled_mode coupling"
3476	printf "\n\n"
3477	echo "coupled_run $iia $iio" > runfile_atmos
3478	fi
3479	poe ./a.out $ROPTS < runfile_atmos
3480	fi
3481	else
3482	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3483	then
3484	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3485	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3486	then
3487	if [[ -f $hostfile ]]
3488	then
3489	cp $hostfile hostfile
3490	else
3491	(( ii = 1 ))
3492	while (( ii <= $numprocs ))
3493	do
3494	echo $localhost_realname >> hostfile
3495	(( ii = ii + 1 ))
3496	done
3497	fi
3498	export MP_HOSTFILE=hostfile
3499	if [[ $run_coupled_model = false ]]
3500	then
3501	if [[ "$ocean_file_appendix" = true ]]
3502	then
3503	echo "precursor_ocean" > runfile_atmos
3504	else
3505	echo "precursor_atmos" > runfile_atmos
3506	fi
3507	else
3508	(( iia = $numprocs_atmos / $threads_per_task ))
3509	(( iio = $numprocs_ocean / $threads_per_task ))
3510	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3511	printf "\n using $coupled_mode coupling"
3512	printf "\n\n"
3513	echo "coupled_run $iia $iio" > runfile_atmos
3514	fi
3515	if [[ $localhost = ibmy ]]
3516	then
3517	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3518	else
3519	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3520	fi
3521
3522	else
3523	if [[ "$host_file" = "" ]]
3524	then
3525	printf "\n +++ no hostfile given in configuration file"
3526	locat=config_file
3527	exit
3528	else
3529	eval host_file=$host_file
3530	fi
3531	export MP_HOSTFILE=$host_file
3532	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3533	fi
3534	fi
3535	elif [[ $host = nech \|\| $host = necriam ]]
3536	then
3537	(( ii = nodes ))
3538	if [[ $ii = 1 ]]
3539	then
3540	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3541	export MPIPROGINF=YES
3542	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3543	echo "*** execution on single node with mpirun"
3544	mpirun -np $numprocs ./a.out $ROPTS
3545	else
3546	(( i = 0 ))
3547	while (( i < ii ))
3548	do
3549	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3550	(( i = i + 1 ))
3551	done
3552
3553	echo "#!/bin/sh" > mpi_exec_shell
3554	echo " " >> mpi_exec_shell
3555	echo "set -u" >> mpi_exec_shell
3556	echo "F_ERRCNT=0" >> mpi_exec_shell
3557	echo "MPIPROGINV=YES" >> mpi_exec_shell
3558	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3559	echo "cpurest=$cpurest" >> mpi_exec_shell
3560	echo "fname=$fname" >> mpi_exec_shell
3561	echo "localhost=$localhost" >> mpi_exec_shell
3562	echo "return_addres=$return_addres" >> mpi_exec_shell
3563	echo "return_username=$return_username" >> mpi_exec_shell
3564	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3565	echo "write_binary=$write_binary" >> mpi_exec_shell
3566	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3567	echo " " >> mpi_exec_shell
3568	echo "export F_ERRCNT" >> mpi_exec_shell
3569	echo "export MPIPROGINV" >> mpi_exec_shell
3570	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3571	echo "export cpurest" >> mpi_exec_shell
3572	echo "export fname" >> mpi_exec_shell
3573	echo "export localhost" >> mpi_exec_shell
3574	echo "export return_addres" >> mpi_exec_shell
3575	echo "export return_username" >> mpi_exec_shell
3576	echo "export tasks_per_node" >> mpi_exec_shell
3577	echo "export write_binary" >> mpi_exec_shell
3578	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3579	echo " " >> mpi_exec_shell
3580	echo "exec ./a.out" >> mpi_exec_shell
3581
3582	chmod u+x mpi_exec_shell
3583	export MPIPROGINF=YES
3584	mpirun -f multinode_config &
3585	wait
3586
3587	fi
3588	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3589	then
3590
3591	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3592	# DOES NOT EXIST
3593	if [[ $host != lcsgih && $host != lcsgib ]]
3594	then
3595	if [[ -f $hostfile ]]
3596	then
3597	cp $hostfile hostfile
3598	(( ii = $numprocs / $threads_per_task ))
3599	else
3600	(( ii = 1 ))
3601	while (( ii <= $numprocs / $threads_per_task ))
3602	do
3603	echo $localhost_realname >> hostfile
3604	(( ii = ii + 1 ))
3605	done
3606	fi
3607	eval zeile=\"`head -n $ii hostfile`\"
3608	printf "\n *** running on: $zeile"
3609	fi
3610
3611	(( ii = $numprocs / $threads_per_task ))
3612	export OMP_NUM_THREADS=$threads_per_task
3613	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3614	if [[ $threads_per_task != 1 ]]
3615	then
3616	# increase stack size to unlimited, because large runs
3617	# may abort otherwise
3618	ulimit -Ss unlimited
3619	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3620	fi
3621	if [[ $run_coupled_model = false ]]
3622	then
3623	if [[ "$ocean_file_appendix" = true ]]
3624	then
3625	echo "precursor_ocean" > runfile_atmos
3626	else
3627	echo "precursor_atmos" > runfile_atmos
3628	fi
3629	printf "\n\n"
3630	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3631	then
3632	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3633	then
3634	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3635	# export MPI_DSM_DISTRIBUTE=1
3636	# MPI_DSM_CPULIST: pin MPI processes to cores
3637	if [[ $use_openmp = false ]]
3638	then
3639	if [[ "$sgi_feature" = ice2 ]]
3640	then
3641	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3642	else
3643	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3644	fi
3645	else
3646	unset MPI_DSM_CPULIST
3647	fi
3648	# MPI_IB_RAILS: use both IB rails on ICE2
3649	export MPI_BUFS_PER_HOST=512
3650	export MPI_IB_RAILS=2
3651	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3652	export MPI_CONNECTIONS_THRESHOLD=8192
3653	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3654	export MPI_TYPE_DEPTH=20
3655	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3656	export MPI_GROUP_MAX=64
3657	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3658	if [[ $use_openmp = true ]]
3659	then
3660	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3661	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3662	else
3663	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3664	fi
3665
3666	# next is test for openmp usage
3667	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3668	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3669	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3670	then
3671	export MV2_NUM_PORTS=2
3672	# The default setting of MV2_CPU_MAPPING gives best results
3673	# export MV2_ENABLE_AFFINITY=1
3674	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3675	# if [[ "$sgi_feature" = ice2 ]]
3676	# then
3677	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3678	# else
3679	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3680	# fi
3681	if [[ $use_openmp = true ]]
3682	then
3683	unset MV2_CPU_MAPPING
3684	export MV2_ENABLE_AFFINITY=0
3685	fi
3686	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3687	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3688	if [[ $use_openmp = true ]]
3689	then
3690	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3691	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3692	else
3693	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3694	fi
3695	elif [[ "$mpilib" = impi ]]
3696	then
3697	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3698	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3699	fi
3700	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3701	then
3702	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3703	elif [[ $host = lcflow ]]
3704	then
3705	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3706	else
3707	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3708	fi
3709	else
3710
3711	# currently there is no full MPI-2 support on ICE and XT4
3712	(( iia = $numprocs_atmos / $threads_per_task ))
3713	(( iio = $numprocs_ocean / $threads_per_task ))
3714	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3715	printf "\n using $coupled_mode coupling"
3716	printf "\n\n"
3717
3718	if [[ $coupled_mode = "mpi2" ]]
3719	then
3720	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3721	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3722	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3723	then
3724
3725	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3726	then
3727	# export MPI_LAUNCH_TIMEOUT=360
3728	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3729	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3730	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3731	then
3732	# ulimit -s 300000 # A too large stack size causes problems
3733	# export MV2_NUM_PORTS=2
3734	# export MV2_CPU_MAPPING=0:1:2:3
3735	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3736	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3737	fi
3738
3739	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3740	then
3741
3742	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3743	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3744
3745	else
3746	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3747	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3748	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3749	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3750	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3751	fi
3752	wait
3753
3754	else
3755
3756	echo "coupled_run $iia $iio" > runfile_atmos
3757	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3758	then
3759
3760	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3761	then
3762	# export MPI_LAUNCH_TIMEOUT=360
3763	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3764	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3765	then
3766	# ulimit -s 300000 # A too large stack size causes problems
3767	# export MV2_NUM_PORTS=2
3768	# export MV2_CPU_MAPPING=0:1:2:3
3769	mpiexec ./a.out $ROPTS < runfile_atmos
3770	fi
3771
3772	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3773	then
3774
3775	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3776
3777	elif [[ $host = lck \|\| $host = lckordi ]]
3778	then
3779	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3780	fi
3781	wait
3782	fi
3783
3784	fi
3785	elif [[ $host = decalpha ]]
3786	then
3787	dmpirun -np $numprocs a.out $ROPTS
3788	elif [[ $host = lckyoto ]]
3789	then
3790	set -xv
3791	export P4_RSHCOMMAND=plesh
3792	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3793	if [[ "$ENVIRONMENT" = BATCH ]]
3794	then
3795	if [[ "$cond2" = fujitsu ]]
3796	then
3797	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3798	elif [[ "cond2" = pgi ]]
3799	then
3800	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3801	else
3802	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3803	fi
3804	else
3805	if [[ "$cond2" = "" ]]
3806	then
3807	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3808	else
3809	mpirun -np $numprocs ./a.out $ROPTS
3810	fi
3811	fi
3812	set +xv
3813	elif [[ $host = lctit ]]
3814	then
3815	export OMP_NUM_THREADS=$threads_per_task
3816	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3817	if [[ "$threads_per_task" != 1 ]]
3818	then
3819	export MV2_ENABLE_AFFINITY=0
3820	fi
3821	echo "----- PBS_NODEFILE content:"
3822	cat $PBS_NODEFILE
3823	echo "-----"
3824	(( ii = $numprocs / $threads_per_task ))
3825	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3826	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3827	else
3828	mpprun -n $numprocs a.out $ROPTS
3829	fi
3830	[[ $? != 0 ]] && execution_error=true
3831
3832
3833	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3834	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3835	then
3836	apprentice
3837	fi
3838	else
3839	a.out $ROPTS
3840	fi
3841	fi
3842	if [[ $? != 0 \|\| $execution_error = true ]]
3843	then
3844
3845	# ABBRUCH BEI LAUFZEITFEHLER
3846	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3847	printf "\n +++ runtime error occured"
3848	locat=execution
3849	exit
3850	else
3851	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3852	printf "\n$striche\n *** execution finished \n"
3853
3854	# Stop the dvr streaming server and process the dvr output in order
3855	# to create dvrs- and html-files containing all streams
3856	if [[ "$dvrserver_id" != "" ]]
3857	then
3858	kill $dvrserver_id
3859	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3860
3861	# If there is a directory, data have been output by the
3862	# streaming server. Otherwise, user has chosen dvrp_output=local
3863	if [[ -d DATA_DVR ]]
3864	then
3865
3866	# Add the current dvr configuration file to the dvr output
3867	# directory
3868	cp .dvrserver.config DATA_DVR
3869
3870	# Process the dvr output (option -s for also generating
3871	# sequence mode data)
3872	process_dvr_output -d DATA_DVR -f $fname -s
3873
3874	else
3875
3876	# Process the local output
3877	process_dvr_output -l -d DATA_DVR -f $fname
3878
3879	fi
3880
3881	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3882	then
3883
3884	# Process dvr output generated in local mode (dvrp_output=local)
3885	process_dvr_output -l -d DATA_DVR -f $fname
3886
3887	fi
3888	fi
3889
3890
3891
3892	# Call of combine_plot_fields in order to merge single files written
3893	# by each PE into one file.
3894	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3895	then
3896	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3897	printf "\n 2d- and/or 3d-data may be incomplete!"
3898	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3899	else
3900	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3901	combine_plot_fields${block}.x
3902	fi
3903
3904
3905
3906	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3907	(( i = 0 ))
3908	while (( i < ioc ))
3909	do
3910	(( i = i + 1 ))
3911	if (( i == 1 ))
3912	then
3913	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3914	fi
3915	printf "\n >>> ${out_command[$i]}"
3916	eval ${out_command[$i]}
3917	if (( i == ioc ))
3918	then
3919	printf "\n$striche\n"
3920	fi
3921	done
3922
3923
3924	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3925	if [[ $do_trace = true ]]
3926	then
3927	printf "\n\n"
3928	ls -al
3929	fi
3930
3931
3932
3933	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3934	(( i = 0 ))
3935	while (( i < iout ))
3936	do
3937	(( i = i + 1 ))
3938	if (( i == 1 ))
3939	then
3940	printf "\n\n *** saving OUTPUT-files:\n$striche"
3941	fi
3942
3943	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3944	files_for_pes=false; filetyp=file
3945	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3946	then
3947	files_for_pes=true; filetyp=directory
3948	actionout[$i]=""
3949	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3950	then
3951	actionout[$i]=""
3952	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3953	then
3954	files_for_pes=true; filetyp=directory
3955	actionout[$i]="ar"
3956	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3957	then
3958	actionout[$i]="ar"
3959	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3960	then
3961	files_for_pes=true; filetyp=directory
3962	actionout[$i]="fl"
3963	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3964	then
3965	actionout[$i]="fl"
3966	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3967	then
3968	files_for_pes=true; filetyp=directory
3969	actionout[$i]="tr"
3970	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3971	then
3972	actionout[$i]="tr"
3973	fi
3974
3975	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3976	then
3977	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3978	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3979	then
3980	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3981	else
3982
3983
3984	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3985	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3986	# REMOTE-RECHNUNGEN
3987	if [[ "${actionout[$i]}" = tr ]]
3988	then
3989	if [[ $localhost != $fromhost ]]
3990	then
3991	if [[ $files_for_pes = false ]]
3992	then
3993	cps=""
3994	cst=""
3995	else
3996	cps=-c
3997	cst="/"
3998	fi
3999	if [[ $localhost = nech ]]
4000	then
4001
4002	# TRANSFER IN EIGENSTAENDIGEM JOB
4003	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4004	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4005	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4006	if [[ $files_for_pes = false ]]
4007	then
4008	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4009	else
4010	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4011	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4012	fi
4013
4014	echo "set -x" > transfer_${localout[$i]}
4015	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4016
4017	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4018	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4019	printf "\n or higher cycle\n"
4020	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4021
4022	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4023
4024	if [[ $localhost = nech ]]
4025	then
4026	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4027	else
4028	if [[ "$LOGNAME" = b323013 ]]
4029	then
4030	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4031	else
4032	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4033	fi
4034	fi
4035
4036	else
4037
4038	# TRANSFER INNERHALB DIESES JOBS
4039	transfer_failed=false
4040	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4041	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4042	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4043	[[ $? != 0 ]] && transfer_failed=true
4044
4045	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4046	# LOKALER MASCHINE ANLEGEN
4047	if [[ $transfer_failed = true ]]
4048	then
4049	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4050	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4051
4052	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4053	# ANLEGEN.
4054	eval local_catalog=${pathout[$i]}
4055	if [[ ! -d $local_catalog ]]
4056	then
4057	printf " *** local directory does not exist. Trying to create:\n"
4058	printf " $local_catalog \n"
4059	mkdir -p $local_catalog
4060	fi
4061	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4062	transfer_problems=true
4063	fi
4064	fi
4065	else
4066
4067	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4068	actionout[$i]=""
4069	fi
4070	fi
4071
4072
4073	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4074	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4075	# REMOTE-RECHNUNGEN
4076	if [[ "${actionout[$i]}" = tra ]]
4077	then
4078	if [[ $localhost != $fromhost ]]
4079	then
4080	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4081	then
4082
4083	# TRANSFER IN EIGENSTAENDIGEM JOB
4084	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4085	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4086	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4087	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4088
4089	echo "set -x" > transfer_${localout[$i]}
4090	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4091
4092	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4093	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4094	printf "\n or higher cycle\n"
4095	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4096
4097	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4098
4099	if [[ $localhost = nech ]]
4100	then
4101	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4102	else
4103	if [[ $LOGNAME = b323013 ]]
4104	then
4105	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4106	else
4107	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4108	fi
4109	fi
4110
4111	else
4112
4113	# TRANSFER INNERHALB DIESES JOBS
4114	transfer_failed=false
4115	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4116	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4117	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4118	[[ $? != 0 ]] && transfer_failed=true
4119
4120	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4121	# LOKALER MASCHINE ANLEGEN
4122	if [[ $transfer_failed = true ]]
4123	then
4124	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4125	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4126
4127	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4128	# ANLEGEN
4129	eval local_catalog=${pathout[$i]}
4130	if [[ ! -d $local_catalog ]]
4131	then
4132	printf " *** local directory does not exist. Trying to create:\n"
4133	printf " $local_catalog \n"
4134	mkdir -p $local_catalog
4135	fi
4136
4137	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4138	transfer_problems=true
4139	fi
4140	fi
4141	else
4142
4143	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4144	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4145	actionout[$i]=a
4146	fi
4147	fi
4148
4149
4150	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4151	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4152	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4153	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4154	if [[ "${actionout[$i]}" = fl ]]
4155	then
4156	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4157	chmod g+rx $tmp_data_catalog
4158	if [[ $files_for_pes = false ]]
4159	then
4160	printf "\n >>> OUTPUT: ${localout[$i]} to"
4161	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4162	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4163	else
4164	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4165	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4166	mkdir $tmp_data_catalog/${frelout[$i]}
4167	cd ${localout[$i]}
4168	for file in $(ls *)
4169	do
4170	ln -f $file $tmp_data_catalog/${frelout[$i]}
4171	done
4172	cd $TEMPDIR
4173	fi
4174
4175
4176	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4177	if [[ $store_on_archive_system = true ]]
4178	then
4179
4180	if [[ $archive_system = asterix ]]
4181	then
4182	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4183	if [[ $files_for_pes = false ]]
4184	then
4185	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4186	else
4187	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4188	fi
4189	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4190	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4191	echo "then" >> archive_${frelout[$i]}
4192	echo " do_stageout=false" >> archive_${frelout[$i]}
4193	echo "else" >> archive_${frelout[$i]}
4194	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4195	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4196	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4197	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4198	if [[ $files_for_pes = false ]]
4199	then
4200	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4201	else
4202	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4203	fi
4204	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4205	echo "fi" >> archive_${frelout[$i]}
4206	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4207	elif [[ $archive_system = DMF ]]
4208	then
4209	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4210	if [[ $files_for_pes = false ]]
4211	then
4212	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4213	locat=DMF
4214	exit
4215	else
4216	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4217	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4218	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4219	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4220	fi
4221	elif [[ $archive_system = tivoli ]]
4222	then
4223	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4224	if [[ $files_for_pes = false ]]
4225	then
4226	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4227	echo "set -x" >> archive_${frelout[$i]}
4228	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4229	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4230	else
4231
4232	echo "set -x" >> archive_${frelout[$i]}
4233	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4234	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4235	cd $tmp_data_catalog
4236	all_files=`ls -1 ${frelout[$i]}/*`
4237	cd - > /dev/null
4238	(( inode = 0 ))
4239	(( tp1 = tasks_per_node + 1 ))
4240	while (( inode < nodes ))
4241	do
4242	# echo "*** all_files = \"$all_files\" "
4243	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4244	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4245	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4246	# echo "*** files = \"$files\" "
4247	# echo "*** all_files = \"$all_files\" "
4248	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4249	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4250	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4251	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4252	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4253	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4254	(( inode = inode + 1 ))
4255	done
4256	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4257	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4258	fi
4259	elif [[ $archive_system = ut ]]
4260	then
4261	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4262	if [[ $files_for_pes = false ]]
4263	then
4264	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4265	echo "set -x" >> archive_${frelout[$i]}
4266	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4267	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4268	else
4269
4270	echo "set -x" >> archive_${frelout[$i]}
4271	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4272	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4273	cd $tmp_data_catalog
4274	all_files=`ls -1 ${frelout[$i]}/*`
4275	cd - > /dev/null
4276	(( inode = 0 ))
4277	(( tp1 = tasks_per_node + 1 ))
4278	while (( inode < nodes ))
4279	do
4280	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4281	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4282	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4283	(( inode = inode + 1 ))
4284	done
4285	fi
4286	elif [[ $archive_system = none ]]
4287	then
4288	printf " +++ archiving on $localhost not available!\n"
4289	fi
4290
4291	if [[ $archive_system != none ]]
4292	then
4293	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4294	then
4295	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4296	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4297	elif [[ $localhost = nech ]]
4298	then
4299	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4300	fi
4301	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4302	fi
4303	else
4304	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4305	fi
4306
4307
4308	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4309	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4310	if [[ $files_for_pes = false ]]
4311	then
4312	cat /dev/null > ${pathout[$i]}
4313	else
4314	mkdir -p ${pathout[$i]}
4315	fi
4316
4317	fi
4318
4319
4320	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4321	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4322	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4323	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4324	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4325	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4326	if [[ "${actionout[$i]}" = ar ]]
4327	then
4328	if [[ $files_for_pes = false ]]
4329	then
4330	printf "\n >>> OUTPUT: ${localout[$i]} to"
4331	printf "\n ${pathout[$i]}"
4332	printf "\n File will be copied to archive-system ($archive_system) !\n"
4333	else
4334	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4335	printf "\n ${pathout[$i]}"
4336	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4337	fi
4338	mv ${localout[$i]} ${frelout[$i]}
4339
4340	file_saved=false
4341
4342	if [[ $archive_system = asterix ]]
4343	then
4344	do_stageout=true
4345	(( stageout_anz = 0 ))
4346	while [[ $do_stageout = true ]]
4347	do
4348	if [[ $files_for_pes = false ]]
4349	then
4350	stageout ${frelout[$i]} > STAGE_OUTPUT
4351	else
4352	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4353	fi
4354	cat STAGE_OUTPUT
4355	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4356	then
4357	file_saved=true
4358	do_stageout=false
4359	else
4360	if [[ $files_for_pes = false ]]
4361	then
4362	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4363	else
4364	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4365	fi
4366	(( stageout_anz = stageout_anz + 1 ))
4367	if (( stageout_anz == 10 ))
4368	then
4369	printf "\n +++ stoped after 10 unsuccessful tries!"
4370	archive_save=false
4371	do_stageout=false
4372	else
4373	printf "\n *** new try to store on archive after 15 min:"
4374	sleep 900
4375	fi
4376	fi
4377	done
4378	elif [[ $archive_system = DMF ]]
4379	then
4380	if [[ $files_for_pes = false ]]
4381	then
4382	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4383	locat=DMF
4384	exit
4385	else
4386	rm -rf $ARCHIVE/${frelout[$i]}
4387	cp -r ${frelout[$i]} $ARCHIVE
4388	fi
4389	file_saved=true
4390	elif [[ $archive_system = tivoli ]]
4391	then
4392	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4393	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4394	# GELEGT WERDEN
4395	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4396	chmod g+rx $tmp_data_catalog
4397	if [[ $files_for_pes = false ]]
4398	then
4399	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4400	else
4401	mkdir $tmp_data_catalog/${frelout[$i]}
4402	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4403	fi
4404
4405	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4406	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4407	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4408	if [[ $files_for_pes = false ]]
4409	then
4410	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4411	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4412	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4413	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4414	else
4415	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4416	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4417	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4418	fi
4419
4420	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4421	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4422	file_saved=true
4423
4424	elif [[ $archive_system = ut ]]
4425	then
4426	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4427	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4428	# GELEGT WERDEN
4429	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4430	chmod g+rx $tmp_data_catalog
4431	if [[ $files_for_pes = false ]]
4432	then
4433	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4434	else
4435	mkdir $tmp_data_catalog/${frelout[$i]}
4436	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4437	fi
4438
4439	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4440	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4441	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4442	if [[ $files_for_pes = false ]]
4443	then
4444	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4445	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4446	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4447	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4448	else
4449	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4450	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4451	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4452	fi
4453
4454	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4455	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4456	file_saved=true
4457
4458	else
4459	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4460	archive_save=false
4461	fi
4462	if [[ $file_saved = true ]]
4463	then
4464	if [[ $files_for_pes = false ]]
4465	then
4466	cat /dev/null > ${pathout[$i]}
4467	else
4468	mkdir -p ${pathout[$i]}
4469	fi
4470	fi
4471	fi
4472
4473	# APPEND AUF LOKALER MASCHINE
4474	if [[ "${actionout[$i]}" = "a" ]]
4475	then
4476	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4477	then
4478	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4479	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4480	else
4481	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4482	cat ${localout[$i]} >> ${pathout[$i]}
4483	fi
4484	fi
4485
4486	# KOPIEREN AUF LOKALER MASCHINE
4487	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4488	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4489	then
4490
4491	# KOPIEREN AUF EINPROZESSORMASCHINE
4492	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4493	then
4494	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4495	if [[ $link_local_output = true ]]
4496	then
4497	printf " using ln -f\n"
4498	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4499	fi
4500	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4501	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4502	then
4503	if [[ $link_local_output = true ]]
4504	then
4505	printf " ln failed, using cp...\n"
4506	fi
4507	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4508	fi
4509	else
4510	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4511	if [[ $link_local_output = true ]]
4512	then
4513	printf " using ln -f\n"
4514	ln -f ${localout[$i]} ${pathout[$i]}
4515	fi
4516	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4517	if [[ ! -f "${pathout[$i]}" ]]
4518	then
4519	if [[ $link_local_output = true ]]
4520	then
4521	printf " ln failed, using cp...\n"
4522	fi
4523	cp ${localout[$i]} ${pathout[$i]}
4524	fi
4525	fi
4526
4527	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4528	then
4529
4530	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4531	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4532	# WIRD DANN KOPIERT
4533	# PER MOVE UMBENANNT WERDEN
4534	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4535	if [[ $link_local_output = true ]]
4536	then
4537	printf " using ln -f\n"
4538	mkdir ${pathout[$i]}
4539	cd ${localout[$i]}
4540	for file in $(ls *)
4541	do
4542	ln -f $file ${pathout[$i]}
4543	done
4544	cd $TEMPDIR
4545	fi
4546	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4547	if [[ ! -f "${pathout[$i]}/_0000" ]]
4548	then
4549	if [[ $link_local_output = true ]]
4550	then
4551	printf " ln failed for .../_0000, using cp...\n"
4552	fi
4553	cp -r ${localout[$i]} ${pathout[$i]}
4554	fi
4555
4556	fi
4557	fi
4558	done
4559	if (( i != 0 ))
4560	then
4561	if [[ $transfer_problems = true ]]
4562	then
4563	printf "\n$striche\n *** OUTPUT-files saved"
4564	printf "\n +++ WARNING: some data transfers failed! \n"
4565	else
4566	printf "\n$striche\n *** all OUTPUT-files saved \n"
4567	fi
4568	fi
4569
4570
4571	# EVENTUELL FOLGEJOB STARTEN
4572	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4573	if [[ -f CONTINUE_RUN ]]
4574	then
4575
4576	if [[ $archive_save = true ]]
4577	then
4578
4579	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4580	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4581	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4582	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4583	# HANDEN
4584	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4585	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4586	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4587	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4588	then
4589	mc=`echo $mc \| sed 's/#/f/g'`
4590	fi
4591
4592
4593	# JOB STARTEN
4594	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4595	echo " $mc"
4596	printf "\n$striche\n"
4597	if [[ $localhost != $fromhost ]]
4598	then
4599
4600	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4601	then
4602	echo "*** ssh will be used to initiate restart-runs!"
4603	echo " return_addres=\"$return_addres\" "
4604	echo " return_username=\"$return_username\" "
4605	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4606	then
4607	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4608	else
4609	if [[ $localhost = ibmkisti ]]
4610	then
4611	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4612	else
4613	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4614	fi
4615	fi
4616	else
4617	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4618	locat=restart; exit
4619	fi
4620
4621	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4622	# DER AKTUELLE JOB ENDET
4623	if [[ $queue = special1q ]]
4624	then
4625	sleep 120
4626	else
4627	sleep 30
4628	fi
4629
4630	else
4631
4632	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4633	# RUFEN WERDEN, AUSSER AUF lcfimm
4634	cd $LOCAL_PWD
4635	if [[ $localhost = lcfimm ]]
4636	then
4637	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4638	else
4639	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4640	fi
4641	cd - > /dev/null
4642	fi
4643	printf "\n$striche\n *** restart-run initiated \n"
4644
4645
4646	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4647	# GEHOLT WORDEN SIND, LOESCHEN
4648	(( i = 0 ))
4649	while (( i < iin ))
4650	do
4651	(( i = i + 1 ))
4652	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4653	then
4654	rm -r $tmp_data_catalog/${frelin[$i]}
4655	fi
4656	done
4657
4658	else
4659
4660	printf "\n +++ no restart-run possible, since errors occured"
4661	printf "\n during the archive process"
4662	fi
4663
4664	fi
4665
4666
4667
4668	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4669	if [[ "$email_notification" != "none" ]]
4670	then
4671
4672	if [[ $localhost != $fromhost ]]
4673	then
4674	if [[ -f CONTINUE_RUN ]]
4675	then
4676	echo "PALM restart run necessary" > email_text
4677	echo "description header of actual run:" >> email_text
4678	cat CONTINUE_RUN >> email_text
4679	echo "mrun-command to restart:" >> email_text
4680	echo "$mc" >> email_text
4681	else
4682	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4683	fi
4684	mail $email_notification < email_text
4685	printf "\n *** email notification sent to \"$email_notification\" "
4686	fi
4687	fi
4688
4689
4690
4691	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4692	cd $HOME
4693	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4694
4695	else
4696
4697
4698	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4699	# CHENDE AKTIONEN DURCHGEFUEHRT
4700
4701	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4702	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4703	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4704	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4705	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4706	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4707	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4708	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4709	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4710	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4711	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4712	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4713	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4714	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4715	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4716	if [[ $use_openmp = true ]]
4717	then
4718	mrun_com=${mrun_com}" -O $threads_per_task"
4719	fi
4720	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4721	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4722	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4723	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4724	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4725	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4726	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4727	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4728	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4729	if [[ $do_remote = true ]]
4730	then
4731	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4732	fi
4733
4734
4735	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4736	jobfile=jobfile.$RANDOM
4737
4738
4739	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4740	echo "mkdir $TEMPDIR" >> $jobfile
4741	echo "cd $TEMPDIR" >> $jobfile
4742
4743
4744	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4745	if [[ $do_trace = true ]]
4746	then
4747	echo "set -x" >> $jobfile
4748	else
4749	echo "set +vx" >> $jobfile
4750	fi
4751
4752
4753	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4754	# DATEI FUER DEN JOB
4755	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4756	then
4757
4758	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4759	# KOPIEREN
4760	if [[ $restart_run != true ]]
4761	then
4762	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4763	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4764	fi
4765
4766	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4767	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4768	echo "set -x" >> $jobfile
4769	if [[ $host = $localhost ]]
4770	then
4771	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4772	else
4773	if [[ $host != ibmkisti ]]
4774	then
4775	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4776	else
4777	# on KISTI's IBM firewall is only opened on interactive node
4778	echo "localdir=\`pwd\`" >> $jobfile
4779	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4780	fi
4781	fi
4782	echo "export SOURCES_COMPLETE=true" >> $jobfile
4783
4784	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4785	# ARBEITSVERZEICHNIS VERSCHIEBEN
4786	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4787	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4788	echo "execute_mrun=true" >> $jobfile
4789	echo " " >> $jobfile
4790
4791	else
4792
4793	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4794	# SOWIE GEGEBENENFALLS DES MAKEFILES
4795	if [[ $do_compile = true ]]
4796	then
4797
4798	source_catalog=SOURCES_FOR_RUN_$fname
4799
4800	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4801	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4802	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4803	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4804	echo "export SOURCES_COMPLETE=true" >> $jobfile
4805	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4806
4807	for filename in $source_list
4808	do
4809	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4810	echo "cat > $filename << \"%END%\"" >> $jobfile
4811	cat $source_catalog/$filename >> $jobfile
4812	echo " " >> $jobfile
4813	echo "%END%" >> $jobfile
4814	echo " " >> $jobfile
4815	done
4816
4817	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4818	echo "cat > Makefile << \"%END%\"" >> $jobfile
4819	cat $source_catalog/Makefile >> $jobfile
4820	echo " " >> $jobfile
4821	echo "%END%" >> $jobfile
4822	echo " " >> $jobfile
4823
4824	echo "cd - > /dev/null" >> $jobfile
4825
4826	fi
4827
4828
4829	# ABSPEICHERN DER KONFIGURATIONSDATEI
4830	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4831	echo "cat > $config_file << \"%END%\"" >> $jobfile
4832	cat $config_file >> $jobfile
4833	echo "%END%" >> $jobfile
4834	echo " " >> $jobfile
4835
4836
4837	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4838	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4839	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4840	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4841	echo "%END%" >> $jobfile
4842	echo "chmod u+x $mrun_script_name" >> $jobfile
4843	echo "execute_mrun=true" >> $jobfile
4844	echo " " >> $jobfile
4845
4846	fi
4847
4848
4849	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4850	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4851	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4852	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4853	if [[ $do_remote = true ]]
4854	then
4855	(( i = 0 ))
4856	while (( i < iin ))
4857	do
4858	(( i = i + 1 ))
4859	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4860	if [[ "${transin[$i]}" = job ]]
4861	then
4862	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4863	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4864	echo " " >> $jobfile
4865	echo "%END%" >> $jobfile
4866	else
4867	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4868	fi
4869
4870	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4871	echo "if [[ \$? = 1 ]]" >> $jobfile
4872	echo "then" >> $jobfile
4873	echo " echo \" \" " >> $jobfile
4874	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4875	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4876	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4877	echo " execute_mrun=false" >> $jobfile
4878	echo "fi" >> $jobfile
4879	done
4880	fi
4881
4882	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4883	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4884	echo "LOCAL_PWD=$working_directory" >> $jobfile
4885	echo "export LOCAL_PWD" >> $jobfile
4886
4887	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4888	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4889	echo "export LOCAL_MRUN_PATH" >> $jobfile
4890
4891	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4892	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4893	then
4894	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4895	fi
4896
4897	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4898	echo "set -x" >> $jobfile
4899	echo "queue=$queue" >> $jobfile
4900	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4901
4902	echo 'ls -al; echo `pwd`' >> $jobfile
4903	echo "cd \$HOME" >> $jobfile
4904	echo "rm -rf $TEMPDIR" >> $jobfile
4905
4906
4907
4908
4909	# JOB PER SUBJOB STARTEN
4910	if [[ $silent = false ]]
4911	then
4912	printf "\n "
4913	else
4914	printf "\n\n"
4915	fi
4916
4917	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4918	rm -rf $jobfile
4919
4920
4921	fi # ENDE REMOTE-TEIL
4922
4923
4924
4925	# ENDE DER PROZEDUR

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