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source: palm/trunk/SCRIPTS/mrun @ 79

Last change on this file since 79 was 79, checked in by raasch, 18 years ago
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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 61 2007-03-12 05:42:06Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116
117
118
119
120	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
121
122	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
123	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
124	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
125
126	AddFilenames=""
127	additional_conditions=""
128	add_source_path=""
129	afname=""
130	archive_save=true
131	archive_system=none
132	compiler_name=""
133	cond1=""
134	cond2=""
135	config_file=.mrun.config
136	cpp_opts=""
137	cpumax=0
138	cpurest=0
139	delete_temporary_catalog=true
140	do_batch=false
141	do_compile=true
142	do_remote=false
143	do_stagein=true
144	do_stageout=true
145	do_trace=false
146	email_notification=""
147	exclude=""
148	executable=""
149	execution_error=false
150	filetransfer_protocol=""
151	fimm=false
152	fname=test
153	fromhost=""
154	global_revision=""
155	host=""
156	host_file=""
157	hp=""
158	ignore_archive_error=false
159	input_list=""
160	interpreted_config_file=""
161	job_on_file=""
162	keep_data_from_previous_run=false
163	localhost_realname=$(hostname)
164	local_compile=false
165	locat=normal
166	mainprog=""
167	makefile=""
168	mc=$0
169	while [[ $(echo $mc \| grep -c "/") != 0 ]]
170	do
171	mc=`echo $mc \| cut -f2- -d"/"`
172	done
173	module_files=""
174	MODULE_OPTIONS=""
175	mrun_script_name=$mc
176	netcdf_support=false
177	node_usage=default
178	numprocs=""
179	OOPT=""
180	openmp=false
181	output_list=""
182	package_list=""
183	punkte="..........................................................."
184	queue=none
185	read_from_config=""
186	restart_run=false
187	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
188	if [[ $return_addres = 130.75.105.158 ]]
189	then
190	return_addres=172.20.25.41
191	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
192	fi
193	# if [[ $return_addres = 210.117.65.1 ]]
194	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
195	# then
196	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
197	# fi
198	return_password=""
199	return_username=$LOGNAME
200	remotecall=false
201	remote_username=""
202	run_mode=""
203	scirocco=false
204	store_on_archive_system=true
205	striche=" ----------------------------------------------------------------------------"
206	silent=false
207	source_list=""
208	source_path=SOURCE
209	tasks_per_node=""
210	threads_per_task=1
211	tmpcreate=false
212	tmp_data_catalog=""
213	transfer_problems=false
214	usern=$LOGNAME
215	use_makefile=""
216	working_directory=`pwd`
217	TOPT=""
218	XOPT=""
219	zeit=$( date \| cut -c 12-19 )
220
221	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
222	typeset -i cputime i ii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
223
224	typeset -R30 calltime
225	typeset -L20 spalte1
226	typeset -L40 spalte2
227	typeset -L60 spalte3
228	typeset -L35 string1=`date`
229	typeset -L12 string2=$usern
230	typeset -L12 string3=$localhost_realname
231	typeset -L12 string4
232	typeset -L12 string5
233	typeset -L30 version="MRUN 2.0 Rev$Rev: 79 $"
234
235
236
237	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
238	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
239
240	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
241	# EXPORTIERT WERDEN
242	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
243	export input_list memory numprocs output_list queue run_mode
244
245
246
247	# FEHLERBEHANDLUNG
248	# BEI EXIT:
249	trap 'rm -rf tmp_mrun
250	if [[ $locat != localhost ]]
251	then
252	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
253	# then
254	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
255	#MRUN-calls on $localhost
256	#
257	#date and time user localhost remotehost termination mrun-command
258	#--------------------------------------------------------------------------------------------------------------------
259	#%STATEND%
260	# chmod 666 ${mrun_path}/statistik/mrun_statistik
261	# fi
262	#
263	# # EINTRAG IN DIE STATISTIK-DATEI
264	# string4=$host
265	# string5=$locat
266	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
267	# then
268	# if [[ $do_batch = true ]]
269	# then
270	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
271	# else
272	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
273	# fi
274	# fi
275	echo " " > /dev/null
276	fi
277
278	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
279	then
280
281	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
282	(( i = 0 ))
283	while (( i < iec ))
284	do
285	(( i = i + 1 ))
286	printf "\n *** Execution of ERROR-command:\n"
287	printf " >>> ${err_command[$i]}\n"
288	eval ${err_command[$i]}
289	done
290	if [[ -n $interpreted_config_file ]] then
291	rm -rf $interpreted_config_file
292	fi
293	if [[ -n .mrun_environment ]] then
294	rm -rf .mrun_environment
295	fi
296	if [[ $tmpcreate = true ]]
297	then
298	printf "\n *** Contents of \"$TEMPDIR\":\n"
299	ls -al; cd
300	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
301	fi
302	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
303	then
304	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
305	fi
306	printf "\n\n+++ MRUN killed \n\n"
307	elif [[ $locat != control_c ]]
308	then
309	printf "\n\n --> all actions finished\n\n"
310	printf " Bye, bye $usern !!\n\n"
311	fi' exit
312
313
314	# BEI TERMINAL-BREAK:
315	trap 'rm -rf tmp_mrun
316	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
317	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
318	then
319	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
320	fi
321	printf "\n+++ MRUN killed by \"^C\" \n\n"
322	locat=control_c
323	exit
324	' 2
325
326
327	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
328	# BEEN SET
329	if [[ "$PALM_BIN" = "" ]]
330	then
331	printf "\n +++ environment variable PALM_BIN has not been set"
332	printf "\n please set it to the directory where the PALM scripts are located"
333	locat=palm_bin; exit
334	fi
335
336
337	# EVTL. NAMEN DES LOKALEN RECHNERS MIT UEBERGREIFENDEM NAMEN VERSEHEN
338	case $localhost_realname in
339	(atmos) localhost=lcide;;
340	(bora\|breva\|elephanta\|gallego\|gregale\|hababai\|irifi\|levanto\|maestro\|orkan\|ostria\|poniente\|quanero\|scirocco\|vorias) localhost=lcmuk;;
341	(breg-en0\|berni-en0) localhost=ibmb; archive_system=tivoli;;
342	(cs*) localhost=nech; archive_system=ut;;
343	(fimm.bccs.uib.no) localhost=lcmuk;;
344	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII; localhost=neck;;
345	(ground.yonsei.ac.kr) localhost=decalpha;;
346	(gfdl3.yonsei.ac.kr) localhost=decalpha;;
347	(gfdl5) localhost=ibmy;;
348	(hreg-en0\|hanni-en0) localhost=ibmh; archive_system=tivoli;;
349	(nobel*) localhost=ibms;;
350	(sun1\|sun2) localhost=unics;;
351	(tgg*) localhost=lctit;;
352	(*) printf "\n +++ Host \"$localhost_realname\" not admitted for mrun \n"
353	locat=localhost; exit;;
354	esac
355
356	[[ $localhost_realname = scirocco ]] && scirocco=true
357	[[ $localhost_realname = fimm.bccs.uib.no ]] && fimm=true
358
359
360
361	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
362	# FUER FOLGEJOBS BENOETIGT WIRD
363	while getopts :a:AbBc:Cd:D:f:FG:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX: option
364	do
365	case $option in
366	(a) afname=$OPTARG;;
367	(A) store_on_archive_system=false; mc="$mc -A";;
368	(b) do_batch=true; mc="$mc -b";;
369	(B) delete_temporary_catalog=false; mc="$mc -B";;
370	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
371	(C) restart_run=true; mc="$mc -C";;
372	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
373	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
374	(f) filetransfer_protocol=$OPTARG; mc="$mc -f$OPTARG";;
375	(F) job_on_file="-D"; mc="$mc -F";;
376	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
377	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
378	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
379	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
380	(I) ignore_archive_error=true; mc="$mc -I";;
381	(k) keep_data_from_previous_run=true; mc="$mc -k";;
382	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
383	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
384	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
385	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
386	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
387	(O) use_openmp=true; mc="$mc -O";;
388	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
389	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
390	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
391	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
392	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
393	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
394	(S) read_from_config=false; mc="$mc -S";;
395	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
396	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
397	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
398	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
399	(v) silent=true; mc="$mc -v";;
400	(x) do_trace=true;set -x; mc="$mc -x";;
401	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
402	(\?) printf "\n +++ unknown option $OPTARG \n"
403	printf "\n --> type \"$0 ?\" for available options \n"
404	locat=parameter;exit;;
405	esac
406	done
407
408
409	# EVTL. POSITIONSPARAMETER EINLESEN
410	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
411	shift OPTIND-1
412
413
414	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
415	if [[ "$1" = "?" ]]
416	then
417	(printf "\n *** mrun can be called as follows:\n"
418	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
419	printf "\n Description of available options:\n"
420	printf "\n Option Description Default-Value"
421	printf "\n -a base name of input files equiv. -d"
422	printf "\n -A no archiving when using file-attribute fl"
423	printf "\n -b batch-job on local machine ---"
424	printf "\n -B do not delete temporary directory at end ---"
425	printf "\n -c configuration file .mrun.config"
426	printf "\n -d base name of files attached to program test"
427	printf "\n -D preprocessor(cpp)-directives \"\" "
428	printf "\n -f filetransfer protocol (ftp or scp) depending on -h"
429	printf "\n -F create remote job file only ---"
430	printf "\n -h execution host $localhost_realname"
431	printf "\n -i INPUT control list \"\" "
432	printf "\n -I archiving errors of previous batch-jobs"
433	printf "\n will be ignored"
434	printf "\n -k keep data from previous run"
435	printf "\n -K additional conditions for controling"
436	printf "\n usage of conditional code and"
437	printf "\n env-variables in configuration file \"\" "
438	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
439	printf "\n -M Makefile name Makefile"
440	printf "\n -n node usage (shared/not_shared) depending on -h"
441	printf "\n -o OUTPUT control list \"\" "
442	printf "\n -O use OpenMP ---"
443	printf "\n -p software package list \"\" "
444	printf "\n -q queue \"$queue\" "
445	printf "\n -r run control list (combines -i -o) \"\" "
446	printf "\n -s filenames of routines to be compiled \"\" "
447	printf "\n must end with .f, .f90, .F, or .c !"
448	printf "\n use \"..\" for more than one file and wildcards"
449	printf "\n -s TEST compiles all files with w-permit"
450	printf "\n -S config file interpreted by shellscript ---"
451	printf "\n -t allowed cpu-time in seconds (batch) 0"
452	printf "\n -T tasks per node depending on -h"
453	printf "\n -u username on remote machine \"\" "
454	printf "\n -v no prompt for confirmation ---"
455	printf "\n -x tracing of mrun for debug purposes ---"
456	printf "\n -X # of processors (on parallel machines) 1"
457	printf "\n "
458	printf "\n Possible values of positional parameter <modus>:"
459	printf "\n \"?\" - this outline \n\n") \| more
460	exit
461	elif [[ "$1" != "" ]]
462	then
463	printf "\n +++ positional parameter $1 unknown \n"
464	locat=parameter; exit
465	fi
466
467
468
469	# KURZE STARTMELDUNG
470	printf "\n*** $version "
471	printf "\n will be executed. Please wait ..."
472
473
474	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
475	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
476	[[ "$afname" = "" ]] && afname=$fname
477
478
479	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
480	if [[ "$run_mode" != "" ]]
481	then
482	input_list="$input_list $run_mode"
483	output_list="$output_list $run_mode"
484	fi
485
486
487	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
488	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
489	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
490	# STARTET)
491	if [[ "$fromhost" = "" ]]
492	then
493	fromhost=$localhost
494	fi
495
496
497	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
498	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
499	then
500	source_list=TEST
501	local_compile=true
502	host=$localhost
503	fi
504
505
506	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
507	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
508	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
509	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
510	if [[ -n $host && "$host" != $localhost ]]
511	then
512	do_batch=true
513	do_remote=true
514	case $host in
515	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lctit\|unics) true;;
516	(*) printf "\n"
517	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
518	printf "\n or NQS not available on execution host!"
519	locat=nqs; (( iec = 0 )); exit;;
520	esac
521	else
522	host=$localhost
523	fi
524
525
526	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
527	if [[ -n $additional_conditions ]]
528	then
529	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
530	cond1=`echo $additional_conditions \| cut -d" " -f1`
531	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
532	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
533	if [[ -n $dummy ]]
534	then
535	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
536	locat=options; exit
537	fi
538	fi
539
540
541	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
542	# ARCHIVIERUNG FEHLGESCHLAGEN IST
543	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
544	then
545	if [[ $ignore_archive_error = false ]]
546	then
547	printf "\n +++ data archiving of previous run failed"
548	printf "\n see directory \~/job_queue on remote machine"
549	locat=archive; exit
550	else
551	printf "\n +++ warning: data archiving in a previous run failed"
552	printf "\n MRUN continues, trying to get backup copy"
553	fi
554	fi
555
556
557	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
558	if [[ ! -f $config_file ]]
559	then
560	printf "\n\n +++ configuration file: "
561	printf "\n $config_file"
562	printf "\n does not exist"
563	locat=connect; exit
564	fi
565
566
567
568	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
569	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
570	if [[ "$read_from_config" = false ]]
571	then
572
573	[[ $silent = false ]] && printf "\n Reading the configuration file... "
574	while read zeile
575	do
576	[[ $silent = false ]] && printf "."
577
578
579	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
580	# ERSETZEN
581	eval zeile=\"$zeile\"
582
583
584	# INTERPRETATION DER ZEILE
585	if [[ "$(echo $zeile)" = "" ]]
586	then
587	# LEERZEILE, KEINE AKTION
588	continue
589
590	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
591	then
592
593	# ZEILE IST KOMMENTARZEILE
594	true
595
596	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
597	then
598
599	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
600	zeile=$(echo $zeile \| cut -c2-)
601	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
602	var=`echo $zeile \| cut -d" " -f1`
603	value=`echo $zeile \| cut -d" " -s -f2`
604	for_host=`echo $zeile \| cut -d" " -s -f3`
605	for_cond1=`echo $zeile \| cut -d" " -s -f4`
606	for_cond2=`echo $zeile \| cut -d" " -s -f5`
607
608	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
609	then
610
611	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
612	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
613	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
614
615
616	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
617	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
618	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
619	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
620	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
621	# KONFIGURATIONSDATEI
622	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
623	then
624	eval $var=\$value
625
626	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
627	if [[ $do_trace = true ]]
628	then
629	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
630	fi
631	fi
632
633	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
634	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
635	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
636	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
637	if [[ $var = host ]]
638	then
639	if [[ -n $host && "$host" != $localhost ]]
640	then
641	do_batch=true
642	do_remote=true
643	case $host in
644	(ibm\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
645	(*) printf "\n +++ no queueing system available on execution host \"$host\""
646	locat=nqs; exit;;
647	esac
648	else
649	host=$localhost
650	fi
651	fi
652
653	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
654	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
655	# DEN PROGRAMMEN BENOETIGT WERDEN
656	export $var
657	fi
658
659
660
661
662	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
663	then
664
665	# ZEILE DEFINIERT ERROR-KOMMANDO
666	(( iec = iec + 1 ))
667	zeile=$(echo $zeile \| cut -c4-)
668	err_command[$iec]="$zeile"
669
670	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
671	then
672
673	# ZEILE DEFINIERT INPUT-KOMMANDO
674	(( iic = iic + 1 ))
675	zeile=$(echo $zeile \| cut -c4-)
676	in_command[$iic]="$zeile"
677
678	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
679	then
680
681	# ZEILE DEFINIERT OUTPUT-KOMMANDO
682	(( ioc = ioc + 1 ))
683	zeile=$(echo $zeile \| cut -c4-)
684	out_command[$ioc]="$zeile"
685
686	else
687
688	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
689	# s2a: in/out - Feld
690	# s2b: loc - Feld (optional)
691	# s2c: tr/ar - Feld (optional)
692	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
693	s1=`echo $zeile \| cut -d" " -f1`
694	s2=`echo $zeile \| cut -d" " -s -f2`
695	s2a=$(echo $s2 \| cut -d":" -f1)
696	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
697	then
698	s2b=""
699	s2c=""
700	else
701	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
702	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
703	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
704	fi
705	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
706	s3=`echo $zeile \| cut -d" " -f3`
707	s4=`echo $zeile \| cut -d" " -s -f4`
708	s5=`echo $zeile \| cut -d" " -s -f5`
709	s6=`echo $zeile \| cut -d" " -s -f6`
710
711
712	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
713	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
714	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
715	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
716	# HANDEN SEIN MUSS (D.H. s2b = loc)
717	IFSALT="$IFS"; IFS="$IFS:"
718	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
719	then
720	found=false
721	for actual in $input_list
722	do
723	for formal in $s3
724	do
725	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
726	done
727	done
728	if [[ $found = true ]]
729	then
730	(( iin = iin + 1 ))
731	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
732	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
733	extin[$iin]=$s6
734	fi
735	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
736	then
737	found=false
738	for actual in $output_list
739	do
740	for formal in $s3
741	do
742	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
743	done
744	done
745	if [[ $found = true ]]
746	then
747	(( iout = iout + 1 ))
748	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
749	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
750	fi
751	elif [[ "$s2a" != in && "$s2a" != out ]]
752	then
753	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
754	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
755	locat=connect; exit
756	fi
757	IFS="$IFSALT"
758	fi
759	done < $config_file
760
761	else
762
763
764	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
765	[[ $silent = false ]] && printf "..."
766	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
767	export interpreted_config_file=.icf.$RANDOM
768
769	# case $localhost_realname in
770	# (caurus\|twister) interpret_config.hp;;
771	# (bora\|breva\|elephanta\|gallego\|gregale\|hababai\|maestro\|orkan\|ostria) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel_ifc/8.1/lib/; interpret_config_9.x;;
772	# (levanto\|vorias) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel/ifort/9.1.037/lib/; interpret_config_9.x_levanto;;
773	# (quanero) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel_fc_80/lib; interpret_config_9.x;;
774	# (*) interpret_config.x;;
775	# esac
776
777
778	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
779	# VERFUEGUNG STELLEN
780	cat > .mrun_environment << %%END%%
781	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
782	config_file = '$config_file', do_remote = '$do_remote',
783	do_trace = '$do_trace', host = '$host',
784	input_list = '$input_list', icf = '$interpreted_config_file',
785	localhost = '$localhost', output_list = '$output_list' /
786
787	%%END%%
788
789	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
790	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
791	mrun_memory=$memory
792	mrun_cpumax=$cpumax
793	mrun_numprocs=$numprocs
794
795	if [[ $localhost_realname = "gate" ]]
796	then
797	interpret_config_gate.x
798	else
799	interpret_config.x
800	fi
801	rm .mrun_environment
802
803
804	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
805	chmod u+x $interpreted_config_file
806	export PATH=$PATH:.
807	. $interpreted_config_file
808	rm $interpreted_config_file
809
810
811	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
812	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
813	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
814	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
815
816	fi
817
818
819	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
820	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
821	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
822	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
823	if [[ "$SOURCES_COMPLETE" = "" ]]
824	then
825
826	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
827	# VEREINBART WURDE
828	source_path=""
829	line=""
830	grep "%source_path" $config_file > tmp_mrun
831	while read line
832	do
833	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
834	then
835	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
836	then
837	global_source_path=`echo $line \| cut -d" " -f2`
838	fi
839	fi
840	done < tmp_mrun
841
842	line=""
843	found=false
844	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
845	while read line
846	do
847	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
848	then
849	if [[ $found = true ]]
850	then
851	printf "\n\n +++ more than one source path found in configuration file"
852	printf "\n for local host \"$localhost\" "
853	locat=source_path; exit
854	fi
855	source_path=`echo $line \| cut -d" " -f2`
856	found=true
857	fi
858	done < tmp_mrun
859	rm tmp_mrun
860
861	if [[ "$source_path" = "" ]]
862	then
863	if [[ "$global_source_path" != "" ]]
864	then
865	source_path=$global_source_path
866	else
867	printf "\n\n +++ no source path found in configuration file"
868	printf "\n for local host \"$localhost\" "
869	locat=source_path; exit
870	fi
871	fi
872	eval source_path=$source_path
873
874	if [[ ! -d $source_path ]]
875	then
876	printf "\n\n +++ source path \"$source_path\" on local host"
877	printf "\n \"$localhost\" does not exist"
878	locat=source_path; exit
879	fi
880
881	fi
882
883
884	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
885	# DURCH OPTION -G MITGETEILT)
886	if [[ "$global_revision" = "" ]]
887	then
888	global_revision=`svnversion $source_path 2>/dev/null`
889	global_revision="Rev: $global_revision"
890	fi
891
892
893	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
894	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
895	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
896	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
897	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
898	if [[ -n $host && "$host" != $localhost ]]
899	then
900	do_batch=true
901	do_remote=true
902	case $host in
903	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
904	(*) printf "\n"
905	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
906	printf "\n or no queueing system available on execution host!"
907	locat=nqs; (( iec = 0 )); exit;;
908	esac
909	else
910	host=$localhost
911	fi
912
913
914	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
915	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
916	then
917
918	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
919	if [[ ! -n $numprocs ]]
920	then
921	printf "\n"
922	printf "\n +++ option \"-K parallel\" requires additional specification"
923	printf "\n of the number of processors to be used by"
924	printf "\n mrun-option \"-X\" or by environment-variable"
925	printf "\n \"numprocs\" in the configuration file"
926	locat=numprocs; (( iec = 0 )); exit
927	fi
928
929	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
930	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
931	# GESAMTPROZESSORANZAHL IST
932	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
933	then
934	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
935	(( ival = $tasks_per_node ))
936	(( pes = numprocs ))
937	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
938	# then
939	# (( pes = pes - 1 ))
940	# fi
941	(( ii = pes / ival ))
942	if (( pes - ii * ival > 0 ))
943	then
944	printf "\n"
945	printf "\n +++ tasks per node (option \"-T\") must be an integral"
946	printf "\n divisor of the total number of processors (option \"-X\")"
947	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
948	locat=tasks_per_node; (( iec = 0 )); exit
949	fi
950	fi
951
952	# IBMY HAT NUR EINEN KNOTEN
953	if [[ $host = ibmy ]]
954	then
955	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
956	then
957	printf "\n"
958	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
959	printf "\n total number of processors (option \"-X\")"
960	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
961	locat=tasks_per_node; (( iec = 0 )); exit
962	fi
963	fi
964
965	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
966	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
967	if [[ $use_openmp = true ]]
968	then
969	threads_per_task=$tasks_per_node
970	tasks_per_node=1
971	fi
972	OOPT="-O $threads_per_task"
973	TOPT="-T $tasks_per_node"
974
975	# GESAMTZAHL DER KNOTEN BESTIMMEN
976	if [[ "$tasks_per_node" != "" ]]
977	then
978	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
979	fi
980
981	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
982	# SETZEN
983	if [[ $node_usage = default ]]
984	then
985	if [[ $host = ibms ]]
986	then
987	node_usage=shared
988	else
989	node_usage=not_shared
990	fi
991	fi
992	if [[ $node_usage != shared && $node_usage != not_shared ]]
993	then
994	printf "\n"
995	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
996	printf "\n \"shared\" or \"not_shared\""
997	locat=tasks_per_node; (( iec = 0 )); exit
998	fi
999
1000	fi
1001
1002	# PRUEFEN, OB HOSTFILE EXISTIERT
1003	if [[ -n $hostfile ]]
1004	then
1005	if [[ ! -f $hostfile ]]
1006	then
1007	printf "\n"
1008	printf "\n +++ hostfile \"$hostfile\" does not exist"
1009	locat=hostfile; exit
1010	fi
1011	fi
1012
1013	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1014	if [[ $host = ibmy && $do_remote = false ]]
1015	then
1016	if [[ ! -f $HOME/.rhosts ]]
1017	then
1018	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1019	printf "\n\n *** file:"
1020	printf "\n $HOME/.rhosts"
1021	printf "\n was created\n"
1022	fi
1023	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1024	then
1025	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1026	printf "\n\n *** file:"
1027	printf "\n $HOME/.rhosts"
1028	printf "\n was extended by the name of the current host\n"
1029	fi
1030	fi
1031
1032	# DEFAULT-DATEITRANSFER-PROTOKOLL FESTLEGEN
1033	if [[ "$filetransfer_protocol" = "" ]]
1034	then
1035	case $host in
1036	(nech\|neck\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit) filetransfer_protocol=scp;;
1037	(*) filetransfer_protocol=ftp;;
1038	esac
1039	fi
1040
1041	# PRUEFEN, OB ZULAESSIGES DATEITRANSFER-PROTOKOLL GEWAEHLT WURDE
1042	if [[ "$filetransfer_protocol" != ftp && "$filetransfer_protocol" != scp ]]
1043	then
1044	printf "\n"
1045	printf "\n +++ illegal value \"$filetransfer_protocol\" for Option -f"
1046	printf "\n only \"ftp\" or \"scp\" are allowed"
1047	locat=options; exit
1048	fi
1049
1050
1051	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1052	if [[ $queue = none ]]
1053	then
1054	case $host in
1055	(ibmb) if [[ $node_usage = shared ]]
1056	then
1057	queue=cshare
1058	else
1059	queue=csolo
1060	fi;;
1061	(ibmh) if [[ $node_usage = shared ]]
1062	then
1063	queue=cshare
1064	else
1065	queue=csolo
1066	fi;;
1067	(ibmy) queue=parallel;;
1068	(lctit) queue=default;;
1069	(nech) queue=none;;
1070	(neck) queue=P;;
1071	(unics) queue=unics;;
1072	esac
1073	fi
1074
1075
1076	# EVTL. NETCDF-UNTERSTUETZUNG SETZEN
1077	case $host in
1078	(decalpha) netcdf_support=true
1079	netcdf_path=/usr/local/netcdf-3.5.1;;
1080	(ibmb\|ibmh) netcdf_support=true
1081	netcdf_path=/aws/dataformats/netcdf-3.6.0-p1/64-32;;
1082	(ibms) netcdf_support=true
1083	netcdf_path=/applic/lib/NETCDF64;;
1084	(ibmy) netcdf_support=true
1085	netcdf_path=/usr1/users/raasch/pub/netcdf-3.6.0-p1;;
1086	(lcmuk) netcdf_support=true
1087	if [[ $scirocco = true ]]
1088	then
1089	netcdf_path=/opt/netcdf/3.6.2-beta4
1090	elif [[ $fimm = true ]]
1091	then
1092	netcdf_path=/local/netcdf
1093	else
1094	netcdf_path=/muksoft/packages/netcdf/linux
1095	fi;;
1096	(lctit) netcdf_support=true
1097	netcdf_path=/home2/usr5/mkanda/netcdf-3.6.2;;
1098	(nech) netcdf_support=true
1099	netcdf_path=/pool/SX-6/netcdf/netcdf-3.6.0-p1;;
1100	(neck) netcdf_support=true
1101	netcdf_path=/home/DSRC/NC/tatuyama/pub/netcdf-3.6.0-p1;;
1102	esac
1103
1104
1105	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1106	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1107	# ERMITTELN
1108	(( i = 0 ))
1109	while (( i < iin ))
1110	do
1111	(( i = i + 1 ))
1112	(( maxcycle = 0 ))
1113
1114	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1115	if [[ "${actionin[$i]}" = di ]]
1116	then
1117	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1118	# REM-MASCHINE AUSWERTEN
1119	eval filename=${pathin[$i]}/${endin[$i]}
1120	else
1121	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1122	# REM-MASCHINE AUSWERTEN
1123	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1124	fi
1125
1126	# PRUEFEN AUF VORHANDENSEIN
1127	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1128	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1129	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1130	then
1131	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1132	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1133	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1134	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1135	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1136	if [[ "${transin[$i]}" != "locopt" ]]
1137	then
1138	printf "\n\n +++ INPUT-file: "
1139	if [[ "${extin[$i]}" = "" ]]
1140	then
1141	printf "\n $filename"
1142	else
1143	printf "\n $filename.${extin[$i]}"
1144	fi
1145	printf "\n does not exist\n"
1146	locat=input; exit
1147	else
1148	transin[$i]="unavailable"
1149	fi
1150	else
1151
1152	# ZYKLUSNUMMER FESTSTELLEN
1153	ls -1 -d $filename > filelist 2>/dev/null
1154	ls -1 -d $filename.* >> filelist 2>/dev/null
1155	while read zeile
1156	do
1157	cycle=$(print $zeile \| cut -f2 -d".")
1158	if [[ "$cycle" = "$zeile" ]]
1159	then
1160	(( icycle = 0 ))
1161	elif [[ "$cycle" = "${extin[$i]}" ]]
1162	then
1163	(( icycle = 0 ))
1164	else
1165	(( icycle = $cycle ))
1166	fi
1167	if (( icycle > maxcycle ))
1168	then
1169	(( maxcycle = icycle ))
1170	file_to_be_used=$zeile
1171	fi
1172	done <filelist
1173	rm filelist
1174
1175	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1176	if (( maxcycle > 0 ))
1177	then
1178	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1179	then
1180	filename=${filename}.$maxcycle.${extin[$i]}
1181	else
1182	filename=${filename}.$maxcycle
1183	fi
1184	else
1185	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1186	then
1187	filename=${filename}.${extin[$i]}
1188	fi
1189	fi
1190
1191	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1192	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1193	absnamein[$i]=$filename
1194	if (( maxcycle > 0 ))
1195	then
1196	if [[ "${actionin[$i]}" = di ]]
1197	then
1198	frelin[$i]=${endin[$i]}.$maxcycle
1199	else
1200	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1201	fi
1202	else
1203	if [[ "${actionin[$i]}" = di ]]
1204	then
1205	frelin[$i]=${endin[$i]}
1206	else
1207	frelin[$i]=${afname}${endin[$i]}
1208	fi
1209	fi
1210
1211	fi
1212	done
1213
1214
1215	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1216	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1217	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1218	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1219	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1220	(( i = 0 ))
1221	while (( i < iout ))
1222	do
1223	(( i = i + 1 ))
1224	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1225	then
1226	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1227	then
1228	actionout[$i]=""
1229	elif [[ "${actionout[$i]}" = tra ]]
1230	then
1231	actionout[$i]=a
1232	fi
1233	(( maxcycle = 0 ))
1234	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1235	eval catalogname=${pathout[$i]}
1236	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1237	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1238	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1239	then
1240
1241	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1242	if cat /dev/null > $filename
1243	then
1244	rm $filename
1245	else
1246
1247	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1248	if [[ ! -d $catalogname ]]
1249	then
1250	if mkdir -p $catalogname
1251	then
1252	printf "\n\n *** directory:"
1253	printf "\n $catalogname"
1254	printf "\n was created\n"
1255	else
1256	printf "\n\n +++ OUTPUT-file:"
1257	printf "\n $filename"
1258	printf "\n cannot be created, because directory does not exist"
1259	printf "\n and cannot be created either"
1260	printf "\n"
1261	locat=output ; exit
1262	fi 2>/dev/null
1263	else
1264	printf "\n\n +++ OUTPUT-file:"
1265	printf "\n $filename"
1266	printf "\n cannot be created, although directory exists"
1267	printf "\n"
1268	locat=output ; exit
1269	fi
1270	fi 2>/dev/null
1271	else
1272
1273	# ZYKLUSNUMMER FESTSTELLEN
1274	ls -1 -d $filename > filelist 2>/dev/null
1275	ls -1 -d $filename.* >> filelist 2>/dev/null
1276	while read zeile
1277	do
1278	cycle=$(print $zeile \| cut -f2 -d".")
1279	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1280	then
1281	(( icycle = 1 ))
1282	else
1283	(( icycle = $cycle + 1 ))
1284	fi
1285	if (( icycle > maxcycle ))
1286	then
1287	(( maxcycle = icycle ))
1288	fi
1289	done <filelist
1290	rm filelist
1291	fi
1292
1293	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1294	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1295	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1296	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1297	if [[ "${actionout[$i]}" != a ]]
1298	then
1299	if (( maxcycle > 0 ))
1300	then
1301	filename=${filename}.$maxcycle
1302	if cat /dev/null > $filename
1303	then
1304	rm $filename
1305	else
1306	printf "\n +++ OUTPUT-file:"
1307	printf "\n $filename"
1308	printf "\n cannot be created"
1309	locat=output ; exit
1310	fi
1311	fi
1312	else
1313	(( maxcycle = maxcycle - 1 ))
1314	if (( maxcycle > 0 ))
1315	then
1316	filename=${filename}.$maxcycle
1317	fi
1318	fi
1319
1320	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1321	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1322	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1323	pathout[$i]=$filename
1324	if (( maxcycle > 0 ))
1325	then
1326	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1327	else
1328	frelout[$i]=${fname}${endout[$i]}
1329	fi
1330
1331	fi
1332	done
1333
1334
1335	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1336	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1337	# UEBERSETZT ZU WERDEN)
1338	if [[ "$mainprog" = "" && "$executable" = "" ]]
1339	then
1340	printf "\n +++ neither main program nor executable defined"
1341	locat=source; exit
1342	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1343	then
1344	printf "\n +++ main program as well as executable defined"
1345	locat=source; exit
1346	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1347	then
1348	do_compile=false
1349	fi
1350
1351
1352	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1353	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1354	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1355	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1356	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1357	then
1358
1359	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1360	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1361
1362	if [[ $restart_run != true ]]
1363	then
1364	rm -rf SOURCES_FOR_RUN_$fname
1365	mkdir SOURCES_FOR_RUN_$fname
1366	fi
1367
1368
1369	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1370	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1371	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1372	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1373	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1374	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1375	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1376	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1377	# GESAMMELT
1378	if [[ "$source_list" = WRITE_PERMIT ]]
1379	then
1380
1381	source_list=""
1382	cd $source_path
1383
1384
1385	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1386	Names=$(ls -1 *.f90 2>&1)
1387	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1388	Names=$(ls -1 *.F90 2>&1)
1389	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1390	Names=$(ls -1 *.F 2>&1)
1391	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1392	Names=$(ls -1 *.f 2>&1)
1393	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1394	Names=$(ls -1 *.c 2>&1)
1395	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1396
1397
1398	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1399	for dateiname in $Filenames
1400	do
1401	if [[ -w $dateiname ]]
1402	then
1403	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1404	then
1405	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1406	source_list=$source_list"$dateiname "
1407	fi
1408	fi
1409	done
1410
1411	cd - > /dev/null
1412
1413
1414	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1415	then
1416
1417	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1418	source_list=""
1419	cd $source_path
1420
1421
1422	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1423	if [[ ! -d .svn ]]
1424	then
1425	printf "\n\n +++ source directory"
1426	printf "\n \"$source_path\" "
1427	printf "\n is not under control of \"subversion\"."
1428	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1429	fi
1430
1431
1432	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1433	Filenames=""
1434	svn status > tmp_mrun
1435	while read line
1436	do
1437	firstc=`echo $line \| cut -c1`
1438	if [[ $firstc = M \|\| $firstc = "?" ]]
1439	then
1440	Name=`echo "$line" \| cut -c8-`
1441	extension=`echo $Name \| cut -d. -f2`
1442	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1443	then
1444	Filenames="$Filenames "$Name
1445	fi
1446	fi
1447	done < tmp_mrun
1448
1449
1450	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1451	for dateiname in $Filenames
1452	do
1453	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1454	source_list=$source_list"$dateiname "
1455	done
1456
1457	cd - > /dev/null
1458
1459
1460	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1461	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1462	# VORHANDEN
1463	elif [[ "$source_list" != "" && $restart_run != true ]]
1464	then
1465
1466	cd $source_path
1467
1468	for filename in $source_list
1469	do
1470
1471	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1472	if [[ $(print $filename \| grep -c "/") != 0 ]]
1473	then
1474	printf "\n +++ source code file: $filename"
1475	printf "\n must not contain (\"/\") "
1476	locat=source; exit
1477	fi
1478
1479	if [[ ! -f $filename ]]
1480	then
1481	printf "\n +++ source code file: $filename"
1482	printf "\n does not exist"
1483	locat=source; exit
1484	else
1485	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1486	fi
1487
1488	done
1489
1490	cd - > /dev/null
1491
1492	fi
1493
1494
1495	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1496	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1497	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1498	if [[ $restart_run != true ]]
1499	then
1500
1501	if [[ ! -f "$source_path/$mainprog" ]]
1502	then
1503	printf "\n\n +++ main program: $mainprog"
1504	printf "\n does not exist in source directory"
1505	printf "\n \"$source_path\"\n"
1506	locat=source; exit
1507	else
1508	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1509	then
1510	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1511	source_list=${mainprog}" $source_list"
1512	fi
1513	fi
1514	fi
1515
1516
1517	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1518	if [[ $restart_run != true && "$add_source_path" != "" ]]
1519	then
1520
1521	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1522	if [[ ! -d $add_source_path ]]
1523	then
1524	printf "\n\n +++ WARNING: additional source code directory"
1525	printf "\n \"$add_source_path\" "
1526	printf "\n does not exist or is not a directory."
1527	printf "\n No source code will be used from this directory!\n"
1528	add_source_path=""
1529	sleep 3
1530	else
1531
1532	cd $add_source_path
1533
1534	Names=$(ls -1 *.f90 2>&1)
1535	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1536	Names=$(ls -1 *.F90 2>&1)
1537	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1538	Names=$(ls -1 *.F 2>&1)
1539	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1540	Names=$(ls -1 *.f 2>&1)
1541	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1542	Names=$(ls -1 *.c 2>&1)
1543	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1544
1545	cd - > /dev/null
1546	cd SOURCES_FOR_RUN_$fname
1547
1548	for dateiname in $AddFilenames
1549	do
1550	if [[ -f $dateiname ]]
1551	then
1552	printf "\n +++ source code file \"$dateiname\" found in additional"
1553	printf "\n source code directory \"$add_source_path\" "
1554	printf "\n as well as in directory \"$source_path\"."
1555	locat=source; exit
1556	fi
1557
1558	cp $add_source_path/$dateiname .
1559	source_list="$source_list $dateiname"
1560
1561	# Default User-Interface von der Liste entfernen, falls Datei
1562	# ein User-Interface enthaelt
1563	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1564	then
1565	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1566	then
1567	rm -rf user_interface.f90
1568	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1569	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1570	printf "\n since a user-interface is found in file"
1571	printf "\n \"$add_source_path/$dateiname\" \n"
1572	sleep 3
1573	else
1574	printf "\n\n *** user-interface file \"$dateiname\" "
1575	printf "\n added to the files to be translated \n"
1576	sleep 3
1577	fi
1578	fi
1579	done
1580
1581	cd - > /dev/null
1582	fi
1583	fi
1584
1585
1586	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1587	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1588	if [[ $restart_run != true && -n $package_list ]]
1589	then
1590
1591	cd $source_path
1592
1593	for package in $package_list
1594	do
1595
1596	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1597
1598	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1599	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1600	# LIEFERT
1601	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1602
1603
1604	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1605	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1606	for source_list_name in $package_source_list
1607	do
1608	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1609	then
1610
1611	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1612	ending=`echo $source_list_name \| cut -f2 -d.`
1613	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1614	then
1615	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1616	source_list="$source_list $source_list_name"
1617	fi
1618	fi
1619	done
1620	done
1621
1622	cd - > /dev/null
1623	fi
1624
1625
1626	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1627	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1628	if [[ "$use_makefile" = true && "$restart_run" != true ]]
1629	then
1630	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1631	if [[ ! -f $makefile ]]
1632	then
1633	printf "\n +++ file \"$makefile\" does not exist"
1634	printf "\n provide this file or set \"use_makefile=false\" in configuration file\n"
1635	locat=make; exit
1636	else
1637	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1638	fi
1639	fi
1640
1641	fi # do_compile=true
1642
1643
1644	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1645	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1646	if [[ $do_compile = true ]]
1647	then
1648
1649	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1650	# ZUSAMMENSETZEN
1651	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1652	then
1653	PPOPTS=-Dibm=ibm
1654	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1655	then
1656	PPOPTS=-Dnec
1657	else
1658	PPOPTS=-D$localhost
1659	fi
1660	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1661	then
1662	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1=$cond1"
1663	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2=$cond2"
1664	if [[ $netcdf_support = true ]]
1665	then
1666	PPOPTS="$PPOPTS -Dnetcdf=netcdf"
1667	[[ $localhost != ibms ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit=netcdf_64bit"
1668	fi
1669	if [[ $localhost = ibmy ]]
1670	then
1671	PPOPTS="$PPOPTS -Dibmy_special=ibmy_special"
1672	fi
1673	else
1674	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1"
1675	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2"
1676	if [[ $netcdf_support = true ]]
1677	then
1678	PPOPTS="$PPOPTS -Dnetcdf"
1679	[[ $localhost != decalpha && $localhost != lctit ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit"
1680	fi
1681	fi
1682	if [[ -n $package_list ]]
1683	then
1684	for package in $package_list
1685	do
1686	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1687	then
1688	if [[ $package != "dvrp_graphics+1PE" ]]
1689	then
1690	PPOPTS="$PPOPTS -D$package=$package"
1691	else
1692	PPOPTS="$PPOPTS -Ddvrp_graphics"
1693	export use_seperate_pe_for_dvrp_output=true
1694	fi
1695	else
1696	if [[ $package != "dvrp_graphics+1PE" ]]
1697	then
1698	PPOPTS="$PPOPTS -D$package"
1699	else
1700	PPOPTS="$PPOPTS -Ddvrp_graphics"
1701	export use_seperate_pe_for_dvrp_output=true
1702	fi
1703	fi
1704	done
1705	fi
1706	if [[ -n $cpp_opts ]]
1707	then
1708	for popts in $cpp_opts
1709	do
1710	PPOPTS="$PPOPTS -D$popts"
1711	done
1712	fi
1713
1714	# -D ARGUMENTEN EINEN DOPPELTEN UNTERSTRICH VORANSTELLEN
1715	PPOPTS=`echo " $PPOPTS" \| sed 's/ -D/ -D__/g'`
1716
1717	# OPTION ZUM EINSCHALTEN DES PRAEPROZESSORS HINZUFUEGEN
1718	if [[ $host = decalpha ]]
1719	then
1720	C_PPOPTS="-cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION $PPOPTS"
1721	elif [[ $(echo $host \| cut -c1-3) = ibm ]]
1722	then
1723	# blanks in PPOPTS muessen durch "," ersetzt werden
1724	PPOPTS=`echo $PPOPTS \| sed 's/ -/,-/g'`
1725	C_PPOPTS="-qsuffix=cpp=f90 -WF,-DMPI_REAL=MPI_DOUBLE_PRECISION,$PPOPTS"
1726	elif [[ $host = lcmuk ]]
1727	then
1728	C_PPOPTS="$PPOPTS -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1729	elif [[ $host = lctit ]]
1730	then
1731	C_PPOPTS="$PPOPTS -Mpreprocess -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1732	elif [[ $(echo $host \| cut -c1-3) = nec ]]
1733	then
1734	C_PPOPTS="-Ep -DMPI_REAL=MPI_REAL8 -DMPI_2REAL=MPI_2REAL8 -DSCFFT=dzfft -DCSFFT=zdfft $PPOPTS"
1735	else
1736	C_PPOPTS="$PPOPTS"
1737	fi
1738
1739	else
1740
1741
1742	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1743	if [[ $do_remote = false ]]
1744	then
1745	if [[ ! -f $executable ]]
1746	then
1747	printf "\n +++ executable file: $executable"
1748	printf "\n does not exist"
1749	locat=executable; exit
1750	fi
1751	fi
1752	fi
1753
1754
1755	# JOBMODUS FESTSTELLEN
1756	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1757	then
1758	jobmo=BATCH
1759	else
1760	jobmo=INTERACTIVE
1761	fi
1762
1763
1764	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1765	# DURCH BENUTZER ANDERWEITIG VEREINBART
1766	if [[ "$compiler_name" = "" ]]
1767	then
1768	case $localhost in
1769	(unics) compiler_name=f77;;
1770	(lcmuk) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1771	then
1772	compiler_name=mpif90
1773	else
1774	compiler_name=ifc
1775	fi;;
1776	(lctit) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1777	then
1778	compiler_name=mpif90
1779	echo ">>> compiler=mpif90"
1780	else
1781	compiler_name=pgf95
1782	echo ">>> compiler=pgf95"
1783	fi;;
1784	(nech) compiler_name=sxmpif90;;
1785	(decalpha) compiler_name=f95;;
1786	(ibm\|ibmb\|ibmh\|ibms\|ibmy) compiler_name=mpxlf95_r;;
1787	(*) printf "\n +++ unknown host name: $localhost \n";
1788	locat=localhost; exit;;
1789	esac
1790	fi
1791
1792
1793	# COMPILER AUF NECK UEBERSCHREIBEN
1794	[[ $localhost = neck ]] && compiler_name=mpif90
1795
1796
1797
1798	# PRAEPROZESSOR-PFAD BESTIMMEN
1799	case $localhost in
1800	(decalpha\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|unics) praeproc=cpp;;
1801	esac
1802
1803
1804	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1805	kennung=$RANDOM
1806	if [[ "$tmp_user_catalog" = "" ]]
1807	then
1808	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1809	then
1810	tmp_user_catalog=$TMPDIR
1811	elif [[ $localhost = nech ]]
1812	then
1813	tmp_user_catalog=$WRKSHR
1814	else
1815	tmp_user_catalog=/tmp
1816	fi
1817	fi
1818	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1819
1820
1821	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1822	# BESTIMMEN
1823	if [[ "$tmp_data_catalog" = "" ]]
1824	then
1825	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1826	then
1827	tmp_data_catalog=$WORK/mrun_restart_data
1828	elif [[ $localhost = nech ]]
1829	then
1830	tmp_data_catalog=$WRKSHR/mrun_restart_data
1831	else
1832	tmp_data_catalog=/tmp/mrun_restart_data
1833	fi
1834	fi
1835
1836
1837	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1838	# ERSETZEN
1839	if [[ $do_remote = false && $do_compile = true ]]
1840	then
1841	eval fopts=\"$fopts\"
1842	eval lopts=\"$lopts\"
1843	fi
1844
1845
1846
1847	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1848	FOPTS="$fopts"
1849	LOPTS="$lopts"
1850	ROPTS="$ropts"
1851	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lctit ) && -n $numprocs ]]
1852	then
1853	XOPT="-X $numprocs"
1854	fi
1855
1856
1857	# BEI VERWENDUNG VON DVRP-SOFTWARE MUSS ENTSPECHENDE GRAFIK-BIBLIOTHEK
1858	# MIT EINGEBUNDEN WERDEN
1859	if [[ -n $package_list ]]
1860	then
1861	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1862	then
1863
1864	# DVRP-GRAFIK GIBT ES NUR AUF DER IBM AM HLRN, AUF NECH/NECK UND
1865	# DEM NOTEBOOK SCIROCCO
1866	if [[ $host != ibmh && $host != nech && $host != neck && $host != lcmuk && "$local_compile" != true ]]
1867	then
1868	printf "\n"
1869	printf "\n +++ option -p with package \"dvrp_graphics\" only allowed on nech and ibmh"
1870	locat=parameter; exit
1871	fi
1872	if [[ $host = ibmh ]]
1873	then
1874	if [[ $cond1 = debug \|\| $cond2 = debug ]]
1875	then
1876	FOPTS="-I/home/h/hzazchmi/lib/debug $FOPTS"
1877	LOPTS="$LOPTS -L/home/h/hzazchmi/lib/debug -lDVRP2 -lftp"
1878	else
1879	FOPTS="-I/home/h/nikevita/lib_stable/optimize $FOPTS"
1880	LOPTS="$LOPTS -L/home/h/nikevita/lib_stable/optimize -lDVRP2 -lftp"
1881	fi
1882	elif [[ $host = nech ]]
1883	then
1884	FOPTS="-I/import/ds9b/ipf2/b/b323014/lib/optimize $FOPTS"
1885	LOPTS="$LOPTS -L/import/ds9b/ipf2/b/b323014/lib/optimize -lDVRP2 -lftp"
1886	elif [[ $host = neck ]]
1887	then
1888	FOPTS="-I/home/DSRC/NC/tatuyama/pub/dvrp $FOPTS"
1889	LOPTS="$LOPTS -L/home/DSRC/NC/tatuyama/pub/dvrp -lDVRP2 -lftp"
1890	elif [[ $host = lcmuk ]]
1891	then
1892	FOPTS="-I/usr/local/lib/dvrp/optimize $FOPTS"
1893	LOPTS="$LOPTS -L/usr/local/lib/dvrp/optimize -lDVRP2 -lftp"
1894	fi
1895	fi
1896	fi
1897
1898
1899	# EVTL. EINBINDEN DER NETCDF-BIBLIOTHEK
1900	if [[ $netcdf_support = true ]]
1901	then
1902	case $host in
1903	(decalpha) FOPTS="-I${netcdf_path}/include $FOPTS"
1904	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1905	(ibmb\|ibmh) FOPTS="-I ${netcdf_path}/include-64 $FOPTS"
1906	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1907	(ibms) FOPTS="-I /applic/netcdf64/src/f90 $FOPTS"
1908	LOPTS="$LOPTS -L${netcdf_path} -lnetcdf";;
1909	(ibmy) FOPTS="-I ${netcdf_path}/include $FOPTS"
1910	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1911	(lcmuk\|nech\|neck) FOPTS="-I ${netcdf_path}/include $FOPTS"
1912	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1913	(lctit) FOPTS="-I ${netcdf_path}/include $FOPTS"
1914	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1915
1916	esac
1917	fi
1918
1919	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1920	# GRAMM BENOETIGT
1921	done=false
1922	while [[ $done = false ]]
1923	do
1924	cputime=$cpumax
1925	if (( $cputime == 0 ))
1926	then
1927	printf "\n +++ cpu-time is undefined"
1928	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1929	printf "\n >>> "
1930	read cputime 1>/dev/null 2>&1
1931	else
1932	done=true
1933	fi
1934	cpumax=$cputime
1935	done
1936
1937	(( minuten = cputime / 60 ))
1938	(( sekunden = cputime - minuten * 60 ))
1939
1940
1941	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1942	if [[ $do_batch = true ]]
1943	then
1944	done=false
1945	while [[ $done = false ]]
1946	do
1947	if (( memory == 0 ))
1948	then
1949	printf "\n +++ memory demand is undefined"
1950	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1951	printf "\n >>> "
1952	read memory 1>/dev/null 2>&1
1953	else
1954	done=true
1955	fi
1956	done
1957	fi
1958
1959
1960	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1961	if [[ $do_remote = true && -z $remote_username ]]
1962	then
1963	while [[ -z $remote_username ]]
1964	do
1965	printf "\n +++ username on remote host \"$host\" is undefined"
1966	printf "\n >>> Please type username:"
1967	printf "\n >>> "
1968	read remote_username
1969	done
1970	mc="$mc -u$remote_username"
1971	fi
1972
1973	###########################################################################
1974	# HEADER-AUSGABE
1975	###########################################################################
1976
1977
1978	calltime=$(date)
1979	printf "\n"
1980	# [[ $silent = false ]] && clear
1981	printf "#--------------------------------------------------------------# \n"
1982	printf "\| $version$calltime \| \n"
1983	printf "\| \| \n"
1984	spalte1="called on:"; spalte2=$localhost_realname
1985	printf "\| $spalte1$spalte2 \| \n"
1986	if [[ $local_compile = false ]]
1987	then
1988	if [[ $do_remote = true ]]
1989	then
1990	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1991	else
1992	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1993	fi
1994	else
1995	spalte1="compiling test only!"; spalte2=""
1996	fi
1997	printf "\| $spalte1$spalte2 \| \n"
1998	if [[ -n $numprocs ]]
1999	then
2000	spalte1="number of PEs:"; spalte2=$numprocs
2001	printf "\| $spalte1$spalte2 \| \n"
2002	fi
2003	if [[ -n $tasks_per_node ]]
2004	then
2005	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2006	printf "\| $spalte1$spalte2 \| \n"
2007	fi
2008	if [[ $threads_per_task != 1 ]]
2009	then
2010	spalte1="threads per task:"; spalte2="$threads_per_task"
2011	printf "\| $spalte1$spalte2 \| \n"
2012	fi
2013	printf "\| \| \n"
2014	if [[ $do_compile = true ]]
2015	then
2016	spalte1=cpp-directives:; spalte2=$C_PPOPTS
2017	printf "\| $spalte1$spalte2 \| \n"
2018	zeile=$(echo "$C_PPOPTS" \| cut -c41-)
2019	while [[ "$zeile" != "" ]]
2020	do
2021	spalte1=""
2022	spalte2=$zeile
2023	printf "\| $spalte1$spalte2 \| \n"
2024	zeile=$(echo "$zeile" \| cut -c41-)
2025	done
2026
2027	spalte1=compiler-options:; spalte2="$FOPTS $MODULE_OPTIONS"
2028	printf "\| $spalte1$spalte2 \| \n"
2029	zeile=$(echo "$FOPTS $MODULE_OPTIONS" \| cut -c41-)
2030	while [[ "$zeile" != "" ]]
2031	do
2032	spalte1=""
2033	spalte2=$zeile
2034	printf "\| $spalte1$spalte2 \| \n"
2035	zeile=$(echo "$zeile" \| cut -c41-)
2036	done
2037
2038	spalte1=linker-options:; spalte2=$LOPTS
2039	printf "\| $spalte1$spalte2 \| \n"
2040	zeile=$(echo "$LOPTS" \| cut -c41-)
2041	while [[ "$zeile" != "" ]]
2042	do
2043	spalte1=""
2044	spalte2=$zeile
2045	printf "\| $spalte1$spalte2 \| \n"
2046	zeile=$(echo "$zeile" \| cut -c41-)
2047	done
2048
2049	spalte1="main program":; spalte2=$mainprog
2050	printf "\| $spalte1$spalte2 \| \n"
2051	if [[ "$use_makefile" = true ]]
2052	then
2053	spalte1="using \"make\" for com"; spalte2="piling and linking"
2054	printf "\| $spalte1$spalte2 \| \n"
2055	fi
2056	# if [[ $vtk_graphics = true ]]
2057	# then
2058	# spalte1=""; spalte2="wird in C++ - Programm eingebunden (vtk)"
2059	# printf "\| $spalte1$spalte2 \| \n"
2060	# fi
2061	else
2062	spalte1=executable:; spalte2=$executable
2063	printf "\| $spalte1$spalte2 \| \n"
2064	fi
2065	printf "\| \| \n"
2066	spalte1="base name of files":; spalte2=$fname
2067	printf "\| $spalte1$spalte2 \| \n"
2068	if [[ $fname != $afname ]]
2069	then
2070	spalte1="base name of input files":; spalte2=$afname
2071	printf "\| $spalte1$spalte2 \| \n"
2072	fi
2073	spalte1="INPUT control list":; spalte2=$input_list
2074	printf "\| $spalte1$spalte2 \| \n"
2075	spalte1="OUTPUT control list":; spalte2=$output_list
2076	printf "\| $spalte1$spalte2 \| \n"
2077
2078	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2079	then
2080	spalte1="memory demand / PE":; spalte2="$memory MB"
2081	printf "\| $spalte1$spalte2 \| \n"
2082	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2083	printf "\| $spalte1$spalte2 \| \n"
2084	fi
2085
2086	if [[ $do_compile = true ]]
2087	then
2088	printf "\| \| \n"
2089	printf "\| Files to be compiled: \| \n"
2090	zeile=$source_list
2091	while [[ "$zeile" != "" ]]
2092	do
2093	spalte3=$zeile
2094	printf "\| $spalte3 \| \n"
2095	zeile=$(echo "$zeile" \| cut -c61-)
2096	done
2097	fi
2098	printf "#--------------------------------------------------------------#"
2099
2100
2101
2102	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2103	if [[ $do_trace = true ]]
2104	then
2105	(( i = 0 ))
2106	while (( i < iin ))
2107	do
2108	(( i = i + 1 ))
2109	if (( i == 1 ))
2110	then
2111	printf "\n\n >>> INPUT-file assignments:\n"
2112	fi
2113	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2114	done
2115	(( i = 0 ))
2116	while (( i < iout ))
2117	do
2118	(( i = i + 1 ))
2119	if (( i == 1 ))
2120	then
2121	printf "\n\n >>> OUTPUT-file assignments:\n"
2122	fi
2123	printf "\n ${localout[$i]} : ${pathout[$i]}"
2124	done
2125	(( i = 0 ))
2126	while (( i < iic ))
2127	do
2128	(( i = i + 1 ))
2129	if (( i == 1 ))
2130	then
2131	printf "\n\n >>> INPUT-commands:\n"
2132	fi
2133	printf "\n ${in_command[$i]}"
2134	done
2135	(( i = 0 ))
2136	while (( i < ioc ))
2137	do
2138	(( i = i + 1 ))
2139	if (( i == 1 ))
2140	then
2141	printf "\n\n >>> OUTPUT-commands:\n"
2142	fi
2143	printf "\n ${out_command[$i]}"
2144	done
2145	fi
2146
2147
2148	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2149	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2150	then
2151	antwort=dummy
2152	printf "\n\n"
2153	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2154	do
2155	printf " >>> everything o.k. (y/n) ? "
2156	read antwort
2157	done
2158	if [[ $antwort = n \|\| $antwort = N ]]
2159	then
2160	locat=user_abort; (( iec = 0 )); exit
2161	fi
2162	if [[ $do_batch = true ]]
2163	then
2164	printf " >>> batch-job will be created and submitted"
2165	else
2166	if [[ $local_compile = false ]]
2167	then
2168	printf " >>> MRUN will now continue to execute on this machine"
2169	else
2170	printf " >>> a test compilation will now be carried out on this machine"
2171	fi
2172	fi
2173	fi
2174
2175
2176
2177
2178	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2179	# CHENDE AKTIONEN DURCHGEFUEHRT
2180	if [[ $do_batch = false ]]
2181	then
2182
2183
2184	# TEMPORAEREN KATALOG ERZEUGEN
2185	mkdir -p $TEMPDIR
2186	chmod go+rx $TEMPDIR
2187	tmpcreate=true
2188
2189
2190	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2191	# TEMPORAERES VERZEICHNIS KOPIEREN
2192	if [[ $do_compile = true ]]
2193	then
2194
2195	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2196	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2197	if [[ $localhost = nech ]]
2198	then
2199	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2200	if mkdir -p $TEMPDIR_COMPILE
2201	then
2202	printf "\n *** \"$TEMPDIR_COMPILE\" "
2203	printf "\n is generated as temporary directory for cross compiling\n"
2204	else
2205	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2206	printf "\n needed for cross compilation failed"
2207	locat=compile
2208	exit
2209	fi
2210	else
2211	TEMPDIR_COMPILE=$TEMPDIR
2212	fi
2213
2214	if [[ "$use_makefile" = true ]]
2215	then
2216
2217	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2218	line=""
2219	grep "%depository_path" $config_file > tmp_mrun
2220	while read line
2221	do
2222	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2223	then
2224	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2225	then
2226	global_depository_path=`echo $line \| cut -d" " -s -f2`
2227	fi
2228	fi
2229	done < tmp_mrun
2230
2231	line=""
2232	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2233	while read line
2234	do
2235	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2236	then
2237	local_depository_path=`echo $line \| cut -d" " -s -f2`
2238	fi
2239	done < tmp_mrun
2240
2241	if [[ "$local_depository_path" = "" ]]
2242	then
2243	if [[ "$global_depository_path" != "" ]]
2244	then
2245	local_depository_path=$global_depository_path
2246	else
2247	printf "\n\n +++ no depository path found in configuration file"
2248	printf "\n for local host \"$localhost\" "
2249	printf "\n please set \"\%depository_path\" in configuration file\n"
2250	locat=config_file; exit
2251	fi
2252	fi
2253	eval local_depository_path=$local_depository_path
2254
2255	basename=`print $mainprog \| cut -f1 -d"."`
2256	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2257	if [[ ! -f $make_depository ]]
2258	then
2259	printf "\n"
2260	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2261	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2262	else
2263	cp $make_depository $TEMPDIR_COMPILE
2264	cd $TEMPDIR_COMPILE
2265	tar -xf $make_depository > /dev/null 2>&1
2266	cd - > /dev/null
2267	fi
2268
2269	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2270
2271	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2272	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2273	# MAKEFILE EINTRAGEN
2274	cd $TEMPDIR_COMPILE
2275	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2276	if [[ "$interface_file" != "" ]]
2277	then
2278	interface_file=`echo $interface_file \| cut -d"." -f1`
2279	mv Makefile Makefile_old
2280	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2281	fi
2282	cd - > /dev/null
2283	fi
2284	else
2285	cp $executable ${TEMPDIR}/a.out
2286	fi
2287
2288
2289	# WECHSEL IN TEMPORAEREN KATALOG
2290	cd $TEMPDIR
2291	printf "\n *** changed to temporary directory: $TEMPDIR"
2292
2293
2294	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2295	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2296	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2297	# ERMITTELN
2298	(( i = 0 ))
2299	while (( i < iout ))
2300	do
2301	(( i = i + 1 ))
2302	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2303	then
2304	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2305	else
2306	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2307	fi
2308	done
2309
2310
2311	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2312	if [[ $do_compile = true ]]
2313	then
2314
2315
2316	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2317	if [[ "$use_makefile" = true ]]
2318	then
2319	printf "\n\n\n *** compilation starts \n$striche\n"
2320	printf " *** compilation with make using following options:\n"
2321	printf " compilername: $compiler_name\n"
2322	printf " options: $FOPTS\n"
2323	printf " preprocessor-directives: $C_PPOPTS \n"
2324	printf " linker-options: $LOPTS \n"
2325	printf " source code files: $source_list \n"
2326
2327	if [[ $localhost = nech ]]
2328	then
2329	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$C_PPOPTS\" F90FLAGS=\"$FOPTS\" LDFLAGS=\"$LOPTS\" "
2330	cp $TEMPDIR_COMPILE/a.out .
2331	[[ $? != 0 ]] && compile_error=true
2332	rm -rf $TEMPDIR_COMPILE
2333	else
2334	make -f Makefile PROG=a.out F90=$compiler_name COPT="$C_PPOPTS" F90FLAGS="$FOPTS" LDFLAGS="$LOPTS"
2335	fi
2336
2337	# UEBERSETZUNG "VON HAND" (OHNE MAKE)
2338	else
2339
2340
2341	# UEBERSETZUNG DER QUELLTEXT-DATEIEN UND DES HAUPTPROGRAMMS
2342	# $CPPOPTS FUER CPP-PRAEPROZESSOR WURDEN OBEN BESTIMMT
2343	printf "\n\n\n *** compilation starts \n$striche\n"
2344
2345
2346	# VORWEG EVTL. UEBERSETZUNG VON PROGRAMMTEILEN MIT SPEZIELLEN
2347	# COMPILERN UND/ODER COMPILEROPTIONEN. DIESE WERDEN BEI DER SPAETEREN
2348	# EIGENTLICHEN UEBERSETZUNG ALS OBJECT-FILES EINGEBUNDEN
2349	new_source_list=""
2350	for filename in $source_list
2351	do
2352
2353	basename=`print $filename \| cut -f1 -d"."`
2354
2355	# EVTL. SPEZIELLEN COMPILER FUER UP BESTIMMEN
2356	comp_var=$(eval echo \$comp_$basename) # \$ liefert evtl. fuer source alternativ vereinbarten Compiler
2357	comp_opt_var=$(eval echo \$$basename) # \$$ liefert evtl. fuer source vereinbarte Compiler-Environment-Variable
2358
2359	if [[ "$comp_var" = "" && "$comp_opt_var" = "" ]]
2360	then
2361	new_source_list="$new_source_list "$filename
2362	else
2363
2364	if [[ "$comp_var" = "" ]]
2365	then
2366	SPECIAL_COMPILER=$compiler_name
2367	else
2368	SPECIAL_COMPILER=$comp_var
2369	fi
2370
2371	if [[ "$comp_opt_var" = "" ]]
2372	then
2373	SPECIAL_FOPTS=$FOPTS
2374	else
2375	SPECIAL_FOPTS="$parallel_options $(eval echo \$$comp_opt_var)"
2376	fi
2377
2378	printf " *** compiling of $filename with special compiler call: $SPECIAL_COMPILER $CPPOPTS -c $SPECIAL_FOPTS \n"
2379	$SPECIAL_COMPILER $C_PPOPTS -c $SPECIAL_FOPTS $MODULE_OPTIONS $filename
2380	if [[ $? != 0 ]]
2381	then
2382	printf "\n +++ compiling error occured"
2383	locat=compile
2384	exit
2385	fi
2386	new_source_list="$new_source_list "${basename}.o
2387	fi
2388	done
2389	source_list="$new_source_list"
2390
2391
2392	# EIGENTLICHE UEBERSETZUNG MIT DEN NORMALEN OPTIONEN
2393	printf " *** compilation with standard options: $compiler_name $FOPTS $MODULE_OPTIONS \n"
2394	printf " preprocessor-directives: $C_PPOPTS \n"
2395	printf " linker-options: $LOPTS \n"
2396	printf " source code files: $source_list \n"
2397
2398	$compiler_name $C_PPOPTS $FOPTS $MODULE_OPTIONS $LOPTS $source_list
2399
2400	fi
2401	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2402	then
2403	printf "\n +++ error occured while compiling or linking"
2404	locat=compile
2405	exit
2406	else
2407	printf "$striche\n *** compilation finished \n"
2408	fi
2409	fi
2410
2411
2412	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2413	if [[ $local_compile = true ]]
2414	then
2415	cd $HOME
2416	rm -rf $TEMPDIR
2417	locat=local_compile; exit
2418	fi
2419
2420
2421	# BEREITSTELLEN DER INPUT-DATEIEN
2422	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2423	(( i = 0 ))
2424	while (( i < iin ))
2425	do
2426	(( i = i + 1 ))
2427	if (( i == 1 ))
2428	then
2429	printf "\n\n *** providing INPUT-files:\n$striche"
2430	fi
2431
2432
2433	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2434	if [[ "${transin[$i]}" = unavailable ]]
2435	then
2436	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2437	then
2438	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2439	printf "\n is not available!"
2440	else
2441	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2442	printf "\n is not available!"
2443	fi
2444	continue
2445	fi
2446
2447	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2448	files_for_pes=false; datentyp=file
2449	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2450	then
2451	files_for_pes=true; datentyp=directory
2452	actionin[$i]=""
2453	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2454	then
2455	actionin[$i]=""
2456	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2457	then
2458	files_for_pes=true; datentyp=directory
2459	actionin[$i]="ar"
2460	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2461	then
2462	actionin[$i]="ar"
2463	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2464	then
2465	files_for_pes=true; datentyp=directory
2466	actionin[$i]="fl"
2467	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2468	then
2469	actionin[$i]="fl"
2470	fi
2471
2472	if [[ $files_for_pes = true ]]
2473	then
2474	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2475	else
2476	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2477	fi
2478
2479	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2480	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2481	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2482	# SERVER ZU HOLEN
2483	if [[ "${actionin[$i]}" = fl ]]
2484	then
2485	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2486	if [[ $files_for_pes = false ]]
2487	then
2488	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2489	then
2490	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2491	got_tmp[$i]=true
2492	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2493	then
2494	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2495	printf "\n *** trying to use backup copy in \"$WORK\" "
2496	cp $WORK/${frelin[$i]} ${localin[$i]}
2497	else
2498	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2499	printf "\n or \"$tmp_data_catalog\" does not exist!"
2500	printf "\n *** trying to get copy from archive"
2501	actionin[$i]=ar
2502	fi
2503	else
2504	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2505	then
2506	mkdir ${localin[$i]}
2507	ln $tmp_data_catalog/${frelin[$i]}/* ${localin[$i]}
2508	got_tmp[$i]=true
2509	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2510	then
2511	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2512	printf "\n *** trying to use backup copy in \"$WORK\" "
2513	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2514	else
2515	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2516	printf "\n or \"$tmp_data_catalog\" does not exist!"
2517	printf "\n *** trying to get copy from archive"
2518	actionin[$i]=ar
2519	fi
2520	fi
2521	fi
2522
2523
2524	# DATEI LIEGT AUF ARCHIV-SERVER
2525	if [[ "${actionin[$i]}" = ar ]]
2526	then
2527
2528	if [[ $files_for_pes = false ]]
2529	then
2530	printf "\n file will be restored from archive-system ($archive_system)!"
2531	else
2532	printf "\n directory will be restored from archive-system ($archive_system)!"
2533	fi
2534
2535	file_restored=false
2536
2537	if [[ $archive_system = asterix ]]
2538	then
2539	do_stagein=true
2540	(( stagein_anz = 0 ))
2541	while [[ $do_stagein = true ]]
2542	do
2543	if [[ $files_for_pes = false ]]
2544	then
2545	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2546	else
2547	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2548	fi
2549	cat STAGEIN_OUTPUT
2550	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2551	then
2552	file_restored=true
2553	do_stagein=false
2554	else
2555	(( stagein_anz = stagein_anz + 1 ))
2556	if (( stagein_anz == 10 ))
2557	then
2558	printf "\n +++ stagein stoped after 10 tries"
2559	locat=stage
2560	exit
2561	fi
2562	printf "\n +++ restoring from archive failed, trying again:"
2563	sleep 900
2564	fi
2565	done
2566	elif [[ $archive_system = DMF ]]
2567	then
2568	if [[ $files_for_pes = false ]]
2569	then
2570	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2571	locat=DMF
2572	exit
2573	else
2574	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2575	cp -r $ARCHIVE/${frelin[$i]} $PWD
2576	file_restored=true
2577	fi
2578	elif [[ $archive_system = tivoli ]]
2579	then
2580	if [[ $files_for_pes = false ]]
2581	then
2582	if [[ $localhost = ibmh ]]
2583	then
2584	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2585	else
2586	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2587	fi
2588	else
2589	(( inode = 0 ))
2590	while (( inode < nodes ))
2591	do
2592	if [[ $localhost = ibmh ]]
2593	then
2594	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2595	else
2596	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2597	fi
2598	(( inode = inode + 1 ))
2599	done
2600	fi
2601	file_restored=true
2602	elif [[ $archive_system = ut ]]
2603	then
2604	if [[ $files_for_pes = false ]]
2605	then
2606	cp $UT/${frelin[$i]} .
2607	else
2608	(( inode = 0 ))
2609	while (( inode < nodes ))
2610	do
2611	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2612	(( inode = inode + 1 ))
2613	done
2614	fi
2615	file_restored=true
2616	else
2617	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2618	locat=rearchive
2619	exit
2620	fi
2621
2622	if [[ $file_restored = true ]]
2623	then
2624
2625	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2626	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2627	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2628	if [[ $files_for_pes = false ]]
2629	then
2630	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2631	else
2632	mkdir $tmp_data_catalog/${frelin[$i]}
2633	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2634	fi
2635	got_tmp[$i]=true
2636
2637	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2638	mv ${frelin[$i]} ${localin[$i]}
2639
2640	fi
2641	fi
2642
2643
2644	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2645	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2646	then
2647
2648	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2649	then
2650
2651	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2652	printf "\n file will be provided for $numprocs processors"
2653	mkdir ${localin[$i]}
2654	ival=$numprocs
2655	(( ii = 0 ))
2656	while (( ii <= ival-1 ))
2657	do
2658	if (( ii < 10 ))
2659	then
2660	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2661	elif (( ii < 100 ))
2662	then
2663	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2664	elif (( ii < 1000 ))
2665	then
2666	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2667	else
2668	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2669	fi
2670	(( ii = ii + 1 ))
2671	done
2672
2673	else
2674
2675	if [[ $files_for_pes = true ]]
2676	then
2677
2678	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2679	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2680	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2681	# PER MOVE UMBENANNT WERDEN
2682	printf "\n providing $numprocs files for the respective processors"
2683	mkdir ${localin[$i]}
2684	cp -r ${absnamein[$i]}/* ${localin[$i]}
2685
2686	else
2687	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2688	cp ${absnamein[$i]} ${localin[$i]}
2689	fi
2690	fi
2691	fi
2692
2693	done
2694	if (( i != 0 ))
2695	then
2696	printf "\n$striche\n *** all INPUT-files provided \n"
2697	fi
2698
2699
2700	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2701	# LESEN VON PALM)
2702	cat > ENVPAR << %%END%%
2703	&envpar run_identifier = '$fname', host = '$localhost',
2704	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2705	maximum_cpu_time_allowed = ${cpumax}.,
2706	revision = '$global_revision' /
2707
2708	%%END%%
2709
2710
2711	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2712	(( i = 0 ))
2713	while (( i < iic ))
2714	do
2715	(( i = i + 1 ))
2716	if (( i == 1 ))
2717	then
2718	printf "\n\n *** execution of INPUT-commands:\n$striche"
2719	fi
2720	printf "\n >>> ${in_command[$i]}"
2721	eval ${in_command[$i]}
2722	if (( i == iic ))
2723	then
2724	printf "\n$striche\n"
2725	fi
2726	done
2727
2728
2729	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2730	cpurest=${cpumax}.
2731
2732
2733	# PROGRAMMSTART
2734	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2735	PATH=$PATH:$TEMPDIR
2736
2737	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2738	then
2739	if [[ "$ENVIRONMENT" = BATCH ]]
2740	then
2741	printf "\n +++ debug is allowed in interactive mode only"
2742	locat=debug
2743	exit
2744	fi
2745	if [[ $localhost = decalpha ]]
2746	then
2747	dxladebug a.out
2748	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2749	then
2750
2751	# SETUP THE IBM MPI ENVIRONMENT
2752	export MP_SHARED_MEMORY=yes
2753	export AIXTHREADS_SCOPE=S
2754	export OMP_NUM_THREADS=$threads_per_task
2755	export AUTHSTATE=files
2756	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2757
2758	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2759	export MP_ADAPTER_USE=shared
2760	export MP_CPU_USE=multiple
2761	export MP_TIMEOUT=1200
2762
2763	unset MP_TASK_AFFINITY
2764
2765	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2766	#(( ii = 1 ))
2767	#while (( ii <= $numprocs ))
2768	#do
2769	# echo $localhost_realname >> hostfile
2770	# (( ii = ii + 1 ))
2771	#done
2772	#export MP_HOSTFILE=hostfile
2773
2774	if [[ "$LOADLBATCH" = yes ]]
2775	then
2776	totalview poe a.out $ROPTS
2777	else
2778	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2779	export TVDSVRLAUNCHCMD=ssh
2780	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2781	fi
2782	else
2783	printf "\n +++ no debug available on \"$localhost\" "
2784	printf "\n or not implemented in mrun so far"
2785	locat=debug
2786	exit
2787	fi
2788	else
2789	if [[ -n $numprocs ]]
2790	then
2791
2792	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2793	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2794	then
2795	# SETUP THE IBM MPI ENVIRONMENT
2796	export MP_SHARED_MEMORY=yes
2797	export AIXTHREAD_SCOPE=S
2798	export OMP_NUM_THREADS=$threads_per_task
2799	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2800	export AUTHSTATE=files
2801	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2802	# export MP_PRINTENV=yes
2803
2804	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2805	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2806	export MP_WAIT_MODE=poll
2807	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2808	# export MP_EAGER_LIMIT=65535
2809
2810	# # TESTWEISE FUER TURBOMPI (JAN 05)
2811	# export MPJ_MTAB=128
2812	# export MPJ_ALLTOALL=1
2813	# export MPJ_ALLTOALLV=1
2814
2815	if [[ "$LOADLBATCH" = yes ]]
2816	then
2817	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2818	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2819	then
2820	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS > aout_output 2>&1
2821	else
2822	poe ./a.out $ROPTS > aout_output 2>&1
2823	fi
2824	else
2825	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2826	then
2827	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS > aout_output 2>&1
2828	elif [[ $localhost = ibmy ]]
2829	then
2830	if [[ -f $hostfile ]]
2831	then
2832	cp $hostfile hostfile
2833	else
2834	(( ii = 1 ))
2835	while (( ii <= $numprocs ))
2836	do
2837	echo $localhost_realname >> hostfile
2838	(( ii = ii + 1 ))
2839	done
2840	fi
2841	export MP_HOSTFILE=hostfile
2842	./a.out -procs $tasks_per_node $ROPTS > aout_output 2>&1
2843	else
2844	if [[ "$host_file" = "" ]]
2845	then
2846	printf "\n +++ no hostfile given in configuration file"
2847	locat=config_file
2848	exit
2849	else
2850	eval host_file=$host_file
2851	fi
2852	export MP_HOSTFILE=$host_file
2853	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS > aout_output 2>&1
2854	fi
2855	fi
2856	elif [[ $host = nech \|\| $host = neck ]]
2857	then
2858	(( ii = nodes ))
2859	if [[ $ii = 1 ]]
2860	then
2861	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2862	export MPIPROGINF=YES
2863	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2864	echo "*** execution on single node with mpirun"
2865	mpirun -np $numprocs ./a.out $ROPTS > aout_output 2>&1
2866	else
2867	(( i = 0 ))
2868	while (( i < ii ))
2869	do
2870	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2871	(( i = i + 1 ))
2872	done
2873
2874	echo "#!/bin/sh" > mpi_exec_shell
2875	echo " " >> mpi_exec_shell
2876	echo "set -u" >> mpi_exec_shell
2877	echo "F_ERRCNT=0" >> mpi_exec_shell
2878	echo "MPIPROGINV=YES" >> mpi_exec_shell
2879	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2880	echo "cpurest=$cpurest" >> mpi_exec_shell
2881	echo "fname=$fname" >> mpi_exec_shell
2882	echo "localhost=$localhost" >> mpi_exec_shell
2883	echo "return_addres=$return_addres" >> mpi_exec_shell
2884	echo "return_username=$return_username" >> mpi_exec_shell
2885	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2886	echo "write_binary=$write_binary" >> mpi_exec_shell
2887	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2888	echo " " >> mpi_exec_shell
2889	echo "export F_ERRCNT" >> mpi_exec_shell
2890	echo "export MPIPROGINV" >> mpi_exec_shell
2891	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2892	echo "export cpurest" >> mpi_exec_shell
2893	echo "export fname" >> mpi_exec_shell
2894	echo "export localhost" >> mpi_exec_shell
2895	echo "export return_addres" >> mpi_exec_shell
2896	echo "export return_username" >> mpi_exec_shell
2897	echo "export tasks_per_node" >> mpi_exec_shell
2898	echo "export write_binary" >> mpi_exec_shell
2899	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2900	echo " " >> mpi_exec_shell
2901	echo "exec ./a.out > aout_output 2>&1" >> mpi_exec_shell
2902
2903	chmod u+x mpi_exec_shell
2904	export MPIPROGINF=YES
2905	mpirun -f multinode_config &
2906	wait
2907
2908	fi
2909	elif [[ $host = lcmuk ]]
2910	then
2911
2912	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2913	# DOES NOT EXIST
2914	if [[ -f $hostfile ]]
2915	then
2916	cp $hostfile hostfile
2917	else
2918	(( ii = 1 ))
2919	while (( ii <= $numprocs / $threads_per_task ))
2920	do
2921	echo $localhost_realname >> hostfile
2922	(( ii = ii + 1 ))
2923	done
2924	fi
2925	(( ii = $numprocs / $threads_per_task ))
2926	eval zeile=\"`head -n $ii hostfile`\"
2927	printf "\n *** running on: $zeile"
2928	export OMP_NUM_THREADS=$threads_per_task
2929	if [[ $threads_per_task != 1 ]]
2930	then
2931	printf "\n threads per task: $threads_per_task"
2932	fi
2933	printf "\n\n"
2934	if [[ $scirocco = true ]]
2935	then
2936	mpiexec -machinefile hostfile -n $ii a.out $ROPTS > aout_output 2>&1
2937	else
2938	mpirun -machinefile hostfile -np $ii a.out $ROPTS > aout_output 2>&1
2939	fi
2940	elif [[ $host = decalpha ]]
2941	then
2942	dmpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2943	elif [[ $host = lctit ]]
2944	then
2945	export runfile=runfile.$kennung
2946
2947	echo "cd $PWD" > $runfile
2948	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2949	echo "export cpurest=$cpurest" >> $runfile
2950	echo "export fname=$fname" >> $runfile
2951	echo "export localhost=$localhost" >> $runfile
2952	echo "export return_addres=$return_addres" >> $runfile
2953	echo "export return_username=$return_username" >> $runfile
2954	echo "export tasks_per_node=$tasks_per_node" >> $runfile
2955	echo "export write_binary=$write_binary" >> $runfile
2956	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
2957	echo "./a.out" >> $runfile
2958	chmod u+x $runfile
2959
2960	if [[ "$QUEUE" = interactive ]]
2961	then
2962	mpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2963	else
2964	n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS > aout_output 2>&1
2965	fi
2966
2967	rm $runfile
2968	else
2969	mpprun -n $numprocs a.out $ROPTS > aout_output 2>&1
2970	fi
2971	[[ $? != 0 ]] && execution_error=true
2972
2973
2974	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
2975	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
2976	then
2977	apprentice
2978	fi
2979	else
2980	a.out $ROPTS > aout_output 2>&1
2981	fi
2982	fi
2983	if [[ $? != 0 \|\| $execution_error = true ]]
2984	then
2985
2986	# ABBRUCH BEI LAUFZEITFEHLER
2987	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2988	printf "\n +++ runtime error occured"
2989	locat=execution
2990	exit
2991	else
2992	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2993	printf "\n$striche\n *** execution finished \n"
2994	fi
2995
2996
2997
2998	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
2999	(( i = 0 ))
3000	while (( i < ioc ))
3001	do
3002	(( i = i + 1 ))
3003	if (( i == 1 ))
3004	then
3005	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3006	fi
3007	printf "\n >>> ${out_command[$i]}"
3008	eval ${out_command[$i]}
3009	if (( i == ioc ))
3010	then
3011	printf "\n$striche\n"
3012	fi
3013	done
3014
3015
3016	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3017	if [[ $do_trace = true ]]
3018	then
3019	printf "\n\n"
3020	ls -al
3021	fi
3022
3023
3024
3025	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3026	(( i = 0 ))
3027	while (( i < iout ))
3028	do
3029	(( i = i + 1 ))
3030	if (( i == 1 ))
3031	then
3032	printf "\n\n *** saving OUTPUT-files:\n$striche"
3033	fi
3034
3035	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3036	files_for_pes=false; filetyp=file
3037	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3038	then
3039	files_for_pes=true; filetyp=directory
3040	actionout[$i]=""
3041	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3042	then
3043	actionout[$i]=""
3044	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3045	then
3046	files_for_pes=true; filetyp=directory
3047	actionout[$i]="ar"
3048	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3049	then
3050	actionout[$i]="ar"
3051	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3052	then
3053	files_for_pes=true; filetyp=directory
3054	actionout[$i]="fl"
3055	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3056	then
3057	actionout[$i]="fl"
3058	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3059	then
3060	files_for_pes=true; filetyp=directory
3061	actionout[$i]="tr"
3062	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3063	then
3064	actionout[$i]="tr"
3065	fi
3066
3067	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3068	then
3069	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3070	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3071	then
3072	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3073	else
3074
3075
3076	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3077	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3078	# REMOTE-RECHNUNGEN
3079	if [[ "${actionout[$i]}" = tr ]]
3080	then
3081	if [[ $localhost != $fromhost ]]
3082	then
3083	if [[ $files_for_pes = false ]]
3084	then
3085	cps=""
3086	cst=""
3087	else
3088	cps=-c
3089	cst="/"
3090	fi
3091	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3092	then
3093
3094	# TRANSFER IN EIGENSTAENDIGEM JOB
3095	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3096	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3097	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3098	if [[ $files_for_pes = false ]]
3099	then
3100	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3101	else
3102	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3103	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3104	fi
3105
3106	echo "set -x" > transfer_${localout[$i]}
3107	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3108	if [[ $filetransfer_protocol = ftp ]]
3109	then
3110	if [[ $files_for_pes = true ]]
3111	then
3112	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3113	fi
3114	printf "\n >>> OUTPUT: ${localout[$i]} by FTP in seperate job to"
3115	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3116	printf "\n or higher cycle\n"
3117	echo "ftpcopy -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3118	else
3119	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3120	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3121	printf "\n or higher cycle\n"
3122	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3123	fi
3124	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3125
3126	if [[ $localhost = nech ]]
3127	then
3128	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3129	else
3130	if [[ "$LOGNAME" = b323013 ]]
3131	then
3132	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3133	else
3134	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3135	fi
3136	fi
3137
3138	else
3139
3140	# TRANSFER INNERHALB DIESES JOBS
3141	transfer_failed=false
3142	if [[ $filetransfer_protocol = ftp ]]
3143	then
3144	if [[ $files_for_pes = true ]]
3145	then
3146	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3147	fi
3148	printf "\n >>> OUTPUT: ${localout[$i]} by FTP to"
3149	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3150	ftpcopy -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3151	[[ $? != 0 ]] && transfer_failed=true
3152	else
3153	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3154	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3155	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3156	[[ $? != 0 ]] && transfer_failed=true
3157	fi
3158
3159	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3160	# LOKALER MASCHINE ANLEGEN
3161	if [[ $transfer_failed = true ]]
3162	then
3163	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3164	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3165
3166	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3167	# ANLEGEN.
3168	eval local_catalog=${pathout[$i]}
3169	if [[ ! -d $local_catalog ]]
3170	then
3171	printf " *** local directory does not exist. Trying to create:\n"
3172	printf " $local_catalog \n"
3173	mkdir -p $local_catalog
3174	fi
3175	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3176	transfer_problems=true
3177	fi
3178	fi
3179	else
3180
3181	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3182	actionout[$i]=""
3183	fi
3184	fi
3185
3186
3187	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3188	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3189	# REMOTE-RECHNUNGEN
3190	if [[ "${actionout[$i]}" = tra ]]
3191	then
3192	if [[ $localhost != $fromhost ]]
3193	then
3194	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3195	then
3196
3197	# TRANSFER IN EIGENSTAENDIGEM JOB
3198	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3199	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3200	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3201	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3202
3203	echo "set -x" > transfer_${localout[$i]}
3204	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3205	if [[ $filetransfer_protocol = ftp ]]
3206	then
3207	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP in seperate job to"
3208	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3209	printf "\n or higher cycle\n"
3210	echo "ftpcopy -A -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3211	else
3212	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3213	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3214	printf "\n or higher cycle\n"
3215	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3216	fi
3217	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3218
3219	if [[ $localhost = nech ]]
3220	then
3221	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3222	else
3223	if [[ $LOGNAME = b323013 ]]
3224	then
3225	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3226	else
3227	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3228	fi
3229	fi
3230
3231	else
3232
3233	# TRANSFER INNERHALB DIESES JOBS
3234	transfer_failed=false
3235	if [[ $filetransfer_protocol = ftp ]]
3236	then
3237	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP to"
3238	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3239	ftpcopy -A -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3240	[[ $? != 0 ]] && transfer_failed=true
3241	else
3242	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3243	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3244	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3245	[[ $? != 0 ]] && transfer_failed=true
3246	fi
3247
3248	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3249	# LOKALER MASCHINE ANLEGEN
3250	if [[ $transfer_failed = true ]]
3251	then
3252	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3253	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3254
3255	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3256	# ANLEGEN
3257	eval local_catalog=${pathout[$i]}
3258	if [[ ! -d $local_catalog ]]
3259	then
3260	printf " *** local directory does not exist. Trying to create:\n"
3261	printf " $local_catalog \n"
3262	mkdir -p $local_catalog
3263	fi
3264
3265	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3266	transfer_problems=true
3267	fi
3268	fi
3269	else
3270
3271	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3272	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3273	actionout[$i]=a
3274	fi
3275	fi
3276
3277
3278	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3279	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3280	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3281	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3282	if [[ "${actionout[$i]}" = fl ]]
3283	then
3284	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3285	chmod g+rx $tmp_data_catalog
3286	if [[ $files_for_pes = false ]]
3287	then
3288	printf "\n >>> OUTPUT: ${localout[$i]} to"
3289	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3290	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3291	else
3292	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3293	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3294	mkdir $tmp_data_catalog/${frelout[$i]}
3295	ln -f ${localout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3296	fi
3297
3298
3299	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3300	if [[ $store_on_archive_system = true ]]
3301	then
3302
3303	if [[ $archive_system = asterix ]]
3304	then
3305	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3306	if [[ $files_for_pes = false ]]
3307	then
3308	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3309	else
3310	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3311	fi
3312	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3313	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3314	echo "then" >> archive_${frelout[$i]}
3315	echo " do_stageout=false" >> archive_${frelout[$i]}
3316	echo "else" >> archive_${frelout[$i]}
3317	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3318	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3319	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3320	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3321	if [[ $files_for_pes = false ]]
3322	then
3323	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3324	else
3325	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3326	fi
3327	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3328	echo "fi" >> archive_${frelout[$i]}
3329	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3330	elif [[ $archive_system = DMF ]]
3331	then
3332	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3333	if [[ $files_for_pes = false ]]
3334	then
3335	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3336	locat=DMF
3337	exit
3338	else
3339	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3340	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3341	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3342	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3343	fi
3344	elif [[ $archive_system = tivoli ]]
3345	then
3346	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3347	if [[ $files_for_pes = false ]]
3348	then
3349	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3350	echo "set -x" >> archive_${frelout[$i]}
3351	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3352	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3353	else
3354
3355	echo "set -x" >> archive_${frelout[$i]}
3356	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3357	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3358	cd $tmp_data_catalog
3359	all_files=`ls -1 ${frelout[$i]}/*`
3360	cd - > /dev/null
3361	(( inode = 0 ))
3362	(( tp1 = tasks_per_node + 1 ))
3363	while (( inode < nodes ))
3364	do
3365	# echo "*** all_files = \"$all_files\" "
3366	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3367	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3368	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3369	# echo "*** files = \"$files\" "
3370	# echo "*** all_files = \"$all_files\" "
3371	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3372	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3373	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3374	(( inode = inode + 1 ))
3375	done
3376	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3377	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3378	fi
3379	elif [[ $archive_system = ut ]]
3380	then
3381	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3382	if [[ $files_for_pes = false ]]
3383	then
3384	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3385	echo "set -x" >> archive_${frelout[$i]}
3386	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3387	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3388	else
3389
3390	echo "set -x" >> archive_${frelout[$i]}
3391	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3392	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3393	cd $tmp_data_catalog
3394	all_files=`ls -1 ${frelout[$i]}/*`
3395	cd - > /dev/null
3396	(( inode = 0 ))
3397	(( tp1 = tasks_per_node + 1 ))
3398	while (( inode < nodes ))
3399	do
3400	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3401	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3402	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3403	(( inode = inode + 1 ))
3404	done
3405	fi
3406	elif [[ $archive_system = none ]]
3407	then
3408	printf " +++ archiving on $localhost not available!\n"
3409	fi
3410
3411	if [[ $archive_system != none ]]
3412	then
3413	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3414	then
3415	subjob -d -v -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3416	elif [[ $localhost = nech ]]
3417	then
3418	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3419	fi
3420	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3421	fi
3422	else
3423	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3424	fi
3425
3426
3427	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3428	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3429	if [[ $files_for_pes = false ]]
3430	then
3431	cat /dev/null > ${pathout[$i]}
3432	else
3433	mkdir -p ${pathout[$i]}
3434	fi
3435
3436	fi
3437
3438
3439	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3440	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3441	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3442	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3443	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3444	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3445	if [[ "${actionout[$i]}" = ar ]]
3446	then
3447	if [[ $files_for_pes = false ]]
3448	then
3449	printf "\n >>> OUTPUT: ${localout[$i]} to"
3450	printf "\n ${pathout[$i]}"
3451	printf "\n File will be copied to archive-system ($archive_system) !\n"
3452	else
3453	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3454	printf "\n ${pathout[$i]}"
3455	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3456	fi
3457	mv ${localout[$i]} ${frelout[$i]}
3458
3459	file_saved=false
3460
3461	if [[ $archive_system = asterix ]]
3462	then
3463	do_stageout=true
3464	(( stageout_anz = 0 ))
3465	while [[ $do_stageout = true ]]
3466	do
3467	if [[ $files_for_pes = false ]]
3468	then
3469	stageout ${frelout[$i]} > STAGE_OUTPUT
3470	else
3471	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3472	fi
3473	cat STAGE_OUTPUT
3474	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3475	then
3476	file_saved=true
3477	do_stageout=false
3478	else
3479	if [[ $files_for_pes = false ]]
3480	then
3481	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3482	else
3483	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3484	fi
3485	(( stageout_anz = stageout_anz + 1 ))
3486	if (( stageout_anz == 10 ))
3487	then
3488	printf "\n +++ stoped after 10 unsuccessful tries!"
3489	archive_save=false
3490	do_stageout=false
3491	else
3492	printf "\n *** new try to store on archive after 15 min:"
3493	sleep 900
3494	fi
3495	fi
3496	done
3497	elif [[ $archive_system = DMF ]]
3498	then
3499	if [[ $files_for_pes = false ]]
3500	then
3501	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3502	locat=DMF
3503	exit
3504	else
3505	rm -rf $ARCHIVE/${frelout[$i]}
3506	cp -r ${frelout[$i]} $ARCHIVE
3507	fi
3508	file_saved=true
3509	elif [[ $archive_system = tivoli ]]
3510	then
3511	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3512	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3513	# GELEGT WERDEN
3514	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3515	chmod g+rx $tmp_data_catalog
3516	if [[ $files_for_pes = false ]]
3517	then
3518	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3519	else
3520	mkdir $tmp_data_catalog/${frelout[$i]}
3521	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3522	fi
3523
3524	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3525	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3526	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3527	if [[ $files_for_pes = false ]]
3528	then
3529	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3530	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3531	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3532	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3533	else
3534	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3535	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3536	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3537	fi
3538
3539	subjob -v -d -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3540	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3541	file_saved=true
3542
3543	elif [[ $archive_system = ut ]]
3544	then
3545	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3546	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3547	# GELEGT WERDEN
3548	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3549	chmod g+rx $tmp_data_catalog
3550	if [[ $files_for_pes = false ]]
3551	then
3552	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3553	else
3554	mkdir $tmp_data_catalog/${frelout[$i]}
3555	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3556	fi
3557
3558	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3559	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3560	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3561	if [[ $files_for_pes = false ]]
3562	then
3563	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3564	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3565	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3566	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3567	else
3568	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3569	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3570	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3571	fi
3572
3573	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3574	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3575	file_saved=true
3576
3577	else
3578	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3579	archive_save=false
3580	fi
3581	if [[ $file_saved = true ]]
3582	then
3583	if [[ $files_for_pes = false ]]
3584	then
3585	cat /dev/null > ${pathout[$i]}
3586	else
3587	mkdir -p ${pathout[$i]}
3588	fi
3589	fi
3590	fi
3591
3592	# APPEND AUF LOKALER MASCHINE
3593	if [[ "${actionout[$i]}" = "a" ]]
3594	then
3595	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3596	cat ${localout[$i]} >> ${pathout[$i]}
3597	fi
3598
3599	# KOPIEREN AUF LOKALER MASCHINE
3600	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3601	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3602	then
3603
3604	# KOPIEREN AUF EINPROZESSORMASCHINE
3605	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3606	then
3607	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3608	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3609	else
3610	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3611	cp ${localout[$i]} ${pathout[$i]}
3612	fi
3613
3614	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3615	then
3616
3617	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3618	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3619	# WIRD DANN KOPIERT
3620	# PER MOVE UMBENANNT WERDEN
3621	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3622	cp -r ${localout[$i]} ${pathout[$i]}
3623
3624	fi
3625	fi
3626	done
3627	if (( i != 0 ))
3628	then
3629	if [[ $transfer_problems = true ]]
3630	then
3631	printf "\n$striche\n *** OUTPUT-files saved"
3632	printf "\n +++ WARNING: some data transfers failed! \n"
3633	else
3634	printf "\n$striche\n *** all OUTPUT-files saved \n"
3635	fi
3636	fi
3637
3638
3639	# EVENTUELL FOLGEJOB STARTEN
3640	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3641	if [[ -f CONTINUE_RUN ]]
3642	then
3643
3644	if [[ $archive_save = true ]]
3645	then
3646
3647	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3648	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3649	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3650	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3651	# HANDEN
3652	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3653	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3654	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3655	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3656	then
3657	mc=`echo $mc \| sed 's/#/f/g'`
3658	fi
3659
3660
3661	# JOB STARTEN
3662	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3663	echo " $mc"
3664	printf "\n$striche\n"
3665	if [[ $localhost != $fromhost ]]
3666	then
3667
3668	if [[ $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3669	then
3670	echo "*** ssh will be used to initiate restart-runs!"
3671	echo " return_addres=\"$return_addres\" "
3672	echo " return_username=\"$return_username\" "
3673	if [[ $return_addres = 172.20.25.41 ]]
3674	then
3675	# WORKAROUND AUF SCIROCCO AM TIT
3676	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3677	else
3678	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3679	fi
3680	else
3681	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3682	locat=restart; exit
3683	fi
3684
3685	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3686	# DER AKTUELLE JOB ENDET
3687	sleep 30
3688
3689	else
3690
3691	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3692	# RUFEN WERDEN
3693	cd $LOCAL_PWD
3694	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3695	cd - > /dev/null
3696	fi
3697	printf "\n$striche\n *** restart-run initiated \n"
3698
3699
3700	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3701	# GEHOLT WORDEN SIND, LOESCHEN
3702	(( i = 0 ))
3703	while (( i < iin ))
3704	do
3705	(( i = i + 1 ))
3706	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3707	then
3708	rm -r $tmp_data_catalog/${frelin[$i]}
3709	fi
3710	done
3711
3712	else
3713
3714	printf "\n +++ no restart-run possible, since errors occured"
3715	printf "\n during the archive process"
3716	fi
3717
3718	fi
3719
3720
3721
3722	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3723	if [[ "$email_notification" != "" ]]
3724	then
3725
3726	if [[ $localhost != $fromhost ]]
3727	then
3728	if [[ -f CONTINUE_RUN ]]
3729	then
3730	echo "PALM restart run necessary" > email_text
3731	echo "description header of actual run:" >> email_text
3732	cat CONTINUE_RUN >> email_text
3733	echo "mrun-command to restart:" >> email_text
3734	echo "$mc" >> email_text
3735	else
3736	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3737	fi
3738	mail $email_notification < email_text
3739	printf "\n *** email notification sent to \"$email_notification\" "
3740	fi
3741	fi
3742
3743
3744
3745	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3746	cd $HOME
3747	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3748
3749	else
3750
3751
3752	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3753	# CHENDE AKTIONEN DURCHGEFUEHRT
3754
3755	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3756	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -f $filetransfer_protocol -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3757	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3758	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
3759	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3760	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3761	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3762	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3763	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3764	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3765	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3766	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3767	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3768	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3769	if [[ $use_openmp = true ]]
3770	then
3771	mrun_com=${mrun_com}" -O"
3772	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3773	else
3774	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3775	fi
3776	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3777	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3778	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3779	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3780	[[ $node_usage != default ]] && mrun_com=${mrun_com}" -n $node_usage"
3781	if [[ $do_remote = true ]]
3782	then
3783	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3784	fi
3785
3786
3787	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3788	jobfile=jobfile.$RANDOM
3789
3790
3791	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3792	echo "mkdir $TEMPDIR" >> $jobfile
3793	echo "cd $TEMPDIR" >> $jobfile
3794
3795
3796	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3797	if [[ $do_trace = true ]]
3798	then
3799	echo "set -x" >> $jobfile
3800	else
3801	echo "set +vx" >> $jobfile
3802	fi
3803
3804
3805	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3806	# SOWIE GEGEBENENFALLS DES MAKEFILES
3807	if [[ $do_compile = true ]]
3808	then
3809
3810	source_catalog=SOURCES_FOR_RUN_$fname
3811
3812	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3813	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3814	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3815	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3816	echo "export SOURCES_COMPLETE=true" >> $jobfile
3817	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3818
3819	for filename in $source_list
3820	do
3821	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3822	echo "cat > $filename << \"%END%\"" >> $jobfile
3823	cat $source_catalog/$filename >> $jobfile
3824	echo " " >> $jobfile
3825	echo "%END%" >> $jobfile
3826	echo " " >> $jobfile
3827	done
3828
3829	if [[ "$use_makefile" = true ]]
3830	then
3831	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3832	echo "cat > Makefile << \"%END%\"" >> $jobfile
3833	cat $source_catalog/Makefile >> $jobfile
3834	echo " " >> $jobfile
3835	echo "%END%" >> $jobfile
3836	echo " " >> $jobfile
3837	fi
3838
3839	echo "cd - > /dev/null" >> $jobfile
3840
3841	fi
3842
3843
3844	# ABSPEICHERN DER KONFIGURATIONSDATEI
3845	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3846	echo "cat > $config_file << \"%END%\"" >> $jobfile
3847	cat $config_file >> $jobfile
3848	echo "%END%" >> $jobfile
3849	echo " " >> $jobfile
3850
3851
3852	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3853	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3854	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3855	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3856	echo "%END%" >> $jobfile
3857	if [[ $host = lctit ]]
3858	then
3859	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3860	echo "mv mrun_new $mrun_script_name" >> $jobfile
3861	fi
3862	echo "chmod u+x $mrun_script_name" >> $jobfile
3863	echo "execute_mrun=true" >> $jobfile
3864	echo " " >> $jobfile
3865
3866	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3867	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3868	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3869	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3870	if [[ $do_remote = true ]]
3871	then
3872	(( i = 0 ))
3873	while (( i < iin ))
3874	do
3875	(( i = i + 1 ))
3876	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3877	if [[ "${transin[$i]}" = job ]]
3878	then
3879	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3880	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3881	echo " " >> $jobfile
3882	echo "%END%" >> $jobfile
3883	else
3884	if [[ $filetransfer_protocol = ftp ]]
3885	then
3886	echo "ftpcopy -b -o -g -s $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3887	else
3888	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3889	fi
3890	fi
3891
3892	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3893	echo "if [[ \$? = 1 ]]" >> $jobfile
3894	echo "then" >> $jobfile
3895	echo " echo \" \" " >> $jobfile
3896	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3897	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3898	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3899	echo " execute_mrun=false" >> $jobfile
3900	echo "fi" >> $jobfile
3901	done
3902	fi
3903
3904	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3905	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
3906	echo "LOCAL_PWD=$working_directory" >> $jobfile
3907	echo "export LOCAL_PWD" >> $jobfile
3908
3909	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
3910	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
3911	echo "export LOCAL_MRUN_PATH" >> $jobfile
3912
3913	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
3914	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
3915	then
3916	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
3917	fi
3918
3919	# MRUN AUF ZIELRECHNER AUFRUFEN
3920	echo "set -x" >> $jobfile
3921	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
3922
3923	echo 'ls -al; echo `pwd`' >> $jobfile
3924	echo "cd \$HOME" >> $jobfile
3925	echo "rm -rf $TEMPDIR" >> $jobfile
3926
3927
3928
3929
3930	# JOB PER SUBJOB STARTEN
3931	if [[ $silent = false ]]
3932	then
3933	printf "\n "
3934	else
3935	printf "\n\n"
3936	fi
3937
3938	subjob $job_on_file -h $host -u $remote_username -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -f $filetransfer_protocol -v $jobfile
3939	rm -rf $jobfile
3940
3941
3942	fi # ENDE REMOTE-TEIL
3943
3944
3945
3946	# ENDE DER PROZEDUR

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