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source: palm/trunk/SCRIPTS/mrun @ 714

Last change on this file since 714 was 696, checked in by raasch, 14 years ago
adjustments for openmp usage on ibmkisti (mrun, subjob); OpenMP-bugfixes: work_fftx removed from PRIVATE clauses in fftx_tr_xy and tr_yx_fftx (poisfft); Bugfix: Summation of Wicker-Skamarock scheme fluxes and variances for all threads (flow_statistics)
Property svn:keywords set to `Id Rev`
File size: 174.6 KB

Line
1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 696 2011-03-18 07:03:49Z suehring $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224
225
226
227
228	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
229
230	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
231	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
232	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
233
234	AddFilenames=""
235	additional_conditions=""
236	add_source_path=""
237	afname=""
238	archive_save=true
239	archive_system=none
240	compiler_name=""
241	cond1=""
242	cond2=""
243	config_file=.mrun.config
244	coupled_dist=""
245	coupled_mode="mpi1"
246	cpp_opts=""
247	cpp_options=""
248	cpumax=0
249	cpurest=0
250	delete_temporary_catalog=true
251	do_batch=false
252	do_compile=true
253	do_remote=false
254	do_stagein=true
255	do_stageout=true
256	do_trace=false
257	email_notification="none"
258	exclude=""
259	executable=""
260	execution_error=false
261	fimm=false
262	fname=test
263	fromhost=""
264	global_revision=""
265	group_number=none
266	host=""
267	host_file=""
268	hp=""
269	ignore_archive_error=false
270	input_list=""
271	interpreted_config_file=""
272	job_catalog="~/job_queue"
273	job_on_file=""
274	keep_data_from_previous_run=false
275	link_local_input=false
276	link_local_output=false
277	localhost_realname=$(hostname)
278	local_compile=false
279	local_dvrserver_running=.FALSE.
280	locat=normal
281	mainprog=""
282	makefile=""
283	mc=$0
284	while [[ $(echo $mc \| grep -c "/") != 0 ]]
285	do
286	mc=`echo $mc \| cut -f2- -d"/"`
287	done
288	module_calls=""
289	mrun_script_name=$mc
290	netcdf_inc=""
291	netcdf_lib=""
292	netcdf_support=false
293	node_usage=default
294	numprocs=""
295	numprocs_atmos=0
296	numprocs_ocean=0
297	OOPT=""
298	openmp=false
299	output_list=""
300	package_list=""
301	punkte="..........................................................."
302	queue=none
303	read_from_config=""
304	restart_run=false
305	if [[ `hostname` = rte10 ]]
306	then
307	return_addres=133.5.185.60
308	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
309	elif [[ `hostname` = climate0 ]]
310	then
311	return_addres=165.132.26.68
312	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
313	else
314	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
315	fi
316	return_password=""
317	return_username=$LOGNAME
318	remotecall=false
319	remote_username=""
320	run_coupled_model=false
321	run_mode=""
322	scirocco=false
323	store_on_archive_system=false
324	striche=" ----------------------------------------------------------------------------"
325	silent=false
326	source_list=""
327	source_path=SOURCE
328	tasks_per_node=""
329	threads_per_task=1
330	tmpcreate=false
331	tmp_data_catalog=""
332	transfer_problems=false
333	usern=$LOGNAME
334	use_openmp=false
335	working_directory=`pwd`
336	TOPT=""
337	XOPT=""
338	zeit=$( date \| cut -c 12-19 )
339
340	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
341	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
342
343	typeset -R30 calltime
344	typeset -L20 spalte1
345	typeset -L40 spalte2
346	typeset -L60 spalte3
347	typeset -L35 string1=`date`
348	typeset -L12 string2=$usern
349	typeset -L12 string3=$localhost_realname
350	typeset -L12 string4
351	typeset -L12 string5
352	typeset -L30 version="MRUN 2.0 Rev$Rev: 696 $"
353
354
355
356	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
357	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
358
359	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
360	# EXPORTIERT WERDEN
361	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
362	export group_number input_list memory numprocs output_list queue run_mode
363
364
365
366	# FEHLERBEHANDLUNG
367	# BEI EXIT:
368	trap 'rm -rf $working_directory/tmp_mrun
369	if [[ $locat != localhost ]]
370	then
371	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
372	# then
373	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
374	#MRUN-calls on $localhost
375	#
376	#date and time user localhost remotehost termination mrun-command
377	#--------------------------------------------------------------------------------------------------------------------
378	#%STATEND%
379	# chmod 666 ${mrun_path}/statistik/mrun_statistik
380	# fi
381	#
382	# # EINTRAG IN DIE STATISTIK-DATEI
383	# string4=$host
384	# string5=$locat
385	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
386	# then
387	# if [[ $do_batch = true ]]
388	# then
389	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
390	# else
391	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
392	# fi
393	# fi
394	echo " " > /dev/null
395	fi
396
397	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
398	then
399
400	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
401	(( i = 0 ))
402	while (( i < iec ))
403	do
404	(( i = i + 1 ))
405	printf "\n *** Execution of ERROR-command:\n"
406	printf " >>> ${err_command[$i]}\n"
407	eval ${err_command[$i]}
408	done
409	if [[ -n $interpreted_config_file ]] then
410	rm -rf $interpreted_config_file
411	fi
412	if [[ -n .mrun_environment ]] then
413	rm -rf .mrun_environment
414	fi
415	if [[ $tmpcreate = true ]]
416	then
417	printf "\n *** Contents of \"$TEMPDIR\":\n"
418	ls -al; cd
419	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
420	fi
421	if [[ "$dvrserver_id" != "" ]]
422	then
423	echo "+++ killing dvrserver_id=$dvrserver_id"
424	kill $dvrserver_id
425	fi
426	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
427	then
428	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
429	fi
430	printf "\n\n+++ MRUN killed \n\n"
431	elif [[ $locat != control_c ]]
432	then
433	printf "\n\n --> all actions finished\n\n"
434	printf " Bye, bye $usern !!\n\n"
435	fi' exit
436
437
438	# BEI TERMINAL-BREAK:
439	trap 'rm -rf $working_directory/tmp_mrun
440	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
441	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
442	then
443	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
444	fi
445	if [[ "$dvrserver_id" != "" ]]
446	then
447	echo "+++ killing dvrserver_id=$dvrserver_id"
448	kill $dvrserver_id
449	fi
450	printf "\n+++ MRUN killed by \"^C\" \n\n"
451	locat=control_c
452	exit
453	' 2
454
455
456	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
457	# BEEN SET
458	if [[ "$PALM_BIN" = "" ]]
459	then
460	printf "\n +++ environment variable PALM_BIN has not been set"
461	printf "\n please set it to the directory where the PALM scripts are located"
462	locat=palm_bin; exit
463	fi
464	export PATH=$PALM_BIN:$PATH
465
466
467
468	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
469	# FUER FOLGEJOBS BENOETIGT WIRD
470	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
471	do
472	case $option in
473	(a) afname=$OPTARG;;
474	(A) store_on_archive_system=true; mc="$mc -A";;
475	(b) do_batch=true; mc="$mc -b";;
476	(B) delete_temporary_catalog=false; mc="$mc -B";;
477	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
478	(C) restart_run=true; mc="$mc -C";;
479	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
480	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
481	(F) job_on_file="-D"; mc="$mc -F";;
482	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
483	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
484	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
485	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
486	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
487	(I) ignore_archive_error=true; mc="$mc -I";;
488	(k) keep_data_from_previous_run=true; mc="$mc -k";;
489	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
490	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
491	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
492	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
493	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
494	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
495	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
496	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
497	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
498	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
499	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
500	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
501	(S) read_from_config=false; mc="$mc -S";;
502	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
503	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
504	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
505	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
506	(v) silent=true; mc="$mc -v";;
507	(x) do_trace=true;set -x; mc="$mc -x";;
508	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
509	(y) ocean_file_appendix=true; mc="$mc -y";;
510	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
511	(\?) printf "\n +++ unknown option $OPTARG \n"
512	printf "\n --> type \"$0 ?\" for available options \n"
513	locat=parameter;exit;;
514	esac
515	done
516
517
518	# EVTL. POSITIONSPARAMETER EINLESEN
519	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
520	shift OPTIND-1
521
522
523	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
524	if [[ "$1" = "?" ]]
525	then
526	(printf "\n *** mrun can be called as follows:\n"
527	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
528	printf "\n Description of available options:\n"
529	printf "\n Option Description Default-Value"
530	printf "\n -a base name of input files equiv. -d"
531	printf "\n -A archiving when using file-attribute fl"
532	printf "\n -b batch-job on local machine ---"
533	printf "\n -B do not delete temporary directory at end ---"
534	printf "\n -c configuration file .mrun.config"
535	printf "\n -d base name of files attached to program test"
536	printf "\n -D preprocessor(cpp)-directives \"\" "
537	printf "\n -F create remote job file only ---"
538	printf "\n -h execution host $localhost_realname"
539	printf "\n -i INPUT control list \"\" "
540	printf "\n -I archiving errors of previous batch-jobs"
541	printf "\n will be ignored"
542	printf "\n -k keep data from previous run"
543	printf "\n -K additional conditions for controling"
544	printf "\n usage of conditional code and"
545	printf "\n env-variables in configuration file \"\" "
546	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
547	printf "\n -M Makefile name Makefile"
548	printf "\n -n node usage (shared/not_shared) depending on -h"
549	printf "\n -o OUTPUT control list \"\" "
550	printf "\n -O use OpenMP ---"
551	printf "\n -p software package list \"\" "
552	printf "\n -q queue \"$queue\" "
553	printf "\n -r run control list (combines -i -o) \"\" "
554	printf "\n -s filenames of routines to be compiled \"\" "
555	printf "\n must end with .f, .f90, .F, or .c !"
556	printf "\n use \"..\" for more than one file and wildcards"
557	printf "\n -s TEST compiles all files with w-permit"
558	printf "\n -S config file interpreted by shellscript ---"
559	printf "\n -t allowed cpu-time in seconds (batch) 0"
560	printf "\n -T tasks per node depending on -h"
561	printf "\n -u username on remote machine \"\" "
562	printf "\n -v no prompt for confirmation ---"
563	printf "\n -x tracing of mrun for debug purposes ---"
564	printf "\n -X # of processors (on parallel machines) 1"
565	printf "\n -y add appendix \"_O\" to all local output"
566	printf "\n files (ocean precursor runs followed by"
567	printf "\n coupled atmosphere-ocean runs) ---"
568	printf "\n -Y run coupled model, \"#1 #2\" with"
569	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
570	printf "\n "
571	printf "\n Possible values of positional parameter <modus>:"
572	printf "\n \"?\" - this outline \n\n") \| more
573	exit
574	elif [[ "$1" != "" ]]
575	then
576	printf "\n +++ positional parameter $1 unknown \n"
577	locat=parameter; exit
578	fi
579
580
581
582	# KURZE STARTMELDUNG
583	printf "\n*** $version "
584	printf "\n will be executed. Please wait ..."
585
586
587
588	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
589	if [[ ! -f $config_file ]]
590	then
591	printf "\n\n +++ configuration file: "
592	printf "\n $config_file"
593	printf "\n does not exist"
594	locat=connect; exit
595	fi
596
597
598	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
599	line=""
600	grep "%host_identifier" $config_file > tmp_mrun
601	while read line
602	do
603	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
604	then
605	HOSTNAME=`echo $line \| cut -d" " -s -f2`
606	host_identifier=`echo $line \| cut -d" " -s -f3`
607	if [[ $localhost_realname = $HOSTNAME ]]
608	then
609	localhost=$host_identifier
610	break
611	fi
612	fi
613	done < tmp_mrun
614
615	if [[ "$localhost" = "" ]]
616	then
617	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
618	printf "\n for local host \"$localhost_realname\"."
619	printf "\n Please add line"
620	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
621	printf "\n to the configuration file."
622	locat=localhost; exit
623	fi
624
625
626	# HOSTSPEZIFISCHE VARIABLEN SETZEN
627	case $localhost_realname in
628	(r1\|r2\|h01\|b01) archive_system=tivoli;;
629	(cs*) archive_system=ut;;
630	(fimm.bccs.uib.no) fimm=true;;
631	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
632	(scirocco) scirocco=true;;
633	esac
634
635
636
637	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
638	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
639	[[ "$afname" = "" ]] && afname=$fname
640
641
642	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
643	if [[ "$run_mode" != "" ]]
644	then
645	input_list="$input_list $run_mode"
646	output_list="$output_list $run_mode"
647	fi
648
649
650	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
651	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
652	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
653	# STARTET)
654	if [[ "$fromhost" = "" ]]
655	then
656	fromhost=$localhost
657	fi
658
659
660	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
661	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
662	then
663	source_list=TEST
664	local_compile=true
665	host=$localhost
666	fi
667
668
669	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
670	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
671	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
672	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
673	if [[ -n $host && "$host" != $localhost ]]
674	then
675	do_batch=true
676	do_remote=true
677	case $host in
678	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck) true;;
679	(*) printf "\n"
680	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
681	printf "\n is not available"
682	locat=nqs; (( iec = 0 )); exit;;
683	esac
684	else
685	host=$localhost
686	fi
687
688
689	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
690	if [[ -n $additional_conditions ]]
691	then
692	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
693	cond1=`echo $additional_conditions \| cut -d" " -f1`
694	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
695	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
696	if [[ -n $dummy ]]
697	then
698	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
699	locat=options; exit
700	fi
701	block=_$cond1
702	[[ -n $cond2 ]] && block=${block}_$cond2
703	fi
704
705
706	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
707	if [[ $run_coupled_model = true ]]
708	then
709
710	if [[ -n $coupled_dist ]]
711	then
712
713	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
714	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
715
716	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
717	then
718
719	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
720	printf "\n PEs (total) : $numprocs"
721	printf "\n PEs (atmosphere): $numprocs_atmos"
722	printf "\n PEs (ocean) : $numprocs_ocean"
723	locat=coupling; exit
724
725	fi
726
727	else
728
729	(( numprocs_ocean = $numprocs / 2 ))
730	(( numprocs_atmos = $numprocs / 2 ))
731
732	fi
733	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
734
735	# GET coupled_mode FROM THE CONFIG FILE
736	line=""
737	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
738	while read line
739	do
740	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
741	then
742	coupled_mode="mpi2"
743	fi
744	done < tmp_mrun
745
746	fi
747
748
749	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
750	# ARCHIVIERUNG FEHLGESCHLAGEN IST
751	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
752	then
753	if [[ $ignore_archive_error = false ]]
754	then
755	printf "\n +++ data archiving of previous run failed"
756	printf "\n see directory \~/job_queue on remote machine"
757	locat=archive; exit
758	else
759	printf "\n +++ warning: data archiving in a previous run failed"
760	printf "\n MRUN continues, trying to get backup copy"
761	fi
762	fi
763
764
765
766	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
767	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
768	if [[ "$read_from_config" = false ]]
769	then
770
771	[[ $silent = false ]] && printf "\n Reading the configuration file... "
772	while read zeile
773	do
774	[[ $silent = false ]] && printf "."
775
776
777	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
778	# ERSETZEN
779	eval zeile=\"$zeile\"
780
781
782	# INTERPRETATION DER ZEILE
783	if [[ "$(echo $zeile)" = "" ]]
784	then
785	# LEERZEILE, KEINE AKTION
786	continue
787
788	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
789	then
790
791	# ZEILE IST KOMMENTARZEILE
792	true
793
794	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
795	then
796
797	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
798	zeile=$(echo $zeile \| cut -c2-)
799	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
800	var=`echo $zeile \| cut -d" " -f1`
801	value=`echo $zeile \| cut -d" " -s -f2`
802	for_host=`echo $zeile \| cut -d" " -s -f3`
803	for_cond1=`echo $zeile \| cut -d" " -s -f4`
804	for_cond2=`echo $zeile \| cut -d" " -s -f5`
805
806	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
807	then
808
809	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
810	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
811	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
812
813
814	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
815	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
816	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
817	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
818	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
819	# KONFIGURATIONSDATEI
820	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
821	then
822	eval $var=\$value
823
824	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
825	if [[ $do_trace = true ]]
826	then
827	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
828	fi
829	fi
830
831	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
832	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
833	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
834	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
835	if [[ $var = host ]]
836	then
837	if [[ -n $host && "$host" != $localhost ]]
838	then
839	do_batch=true
840	do_remote=true
841	case $host in
842	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
843	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
844	printf "\n is not available"
845	locat=nqs; exit;;
846	esac
847	else
848	host=$localhost
849	fi
850	fi
851
852	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
853	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
854	# DEN PROGRAMMEN BENOETIGT WERDEN
855	export $var
856	fi
857
858
859
860
861	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
862	then
863
864	# ZEILE DEFINIERT ERROR-KOMMANDO
865	(( iec = iec + 1 ))
866	zeile=$(echo $zeile \| cut -c4-)
867	err_command[$iec]="$zeile"
868
869	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
870	then
871
872	# ZEILE DEFINIERT INPUT-KOMMANDO
873	(( iic = iic + 1 ))
874	zeile=$(echo $zeile \| cut -c4-)
875	in_command[$iic]="$zeile"
876
877	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
878	then
879
880	# ZEILE DEFINIERT OUTPUT-KOMMANDO
881	(( ioc = ioc + 1 ))
882	zeile=$(echo $zeile \| cut -c4-)
883	out_command[$ioc]="$zeile"
884
885	else
886
887	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
888	# s2a: in/out - Feld
889	# s2b: loc - Feld (optional)
890	# s2c: tr/ar - Feld (optional)
891	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
892	s1=`echo $zeile \| cut -d" " -f1`
893	s2=`echo $zeile \| cut -d" " -s -f2`
894	s2a=$(echo $s2 \| cut -d":" -f1)
895	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
896	then
897	s2b=""
898	s2c=""
899	else
900	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
901	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
902	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
903	fi
904	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
905	s3=`echo $zeile \| cut -d" " -f3`
906	s4=`echo $zeile \| cut -d" " -s -f4`
907	s5=`echo $zeile \| cut -d" " -s -f5`
908	s6=`echo $zeile \| cut -d" " -s -f6`
909
910
911	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
912	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
913	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
914	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
915	# HANDEN SEIN MUSS (D.H. s2b = loc)
916	IFSALT="$IFS"; IFS="$IFS:"
917	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
918	then
919	found=false
920	for actual in $input_list
921	do
922	for formal in $s3
923	do
924	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
925	done
926	done
927	if [[ $found = true ]]
928	then
929	(( iin = iin + 1 ))
930	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
931	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
932	extin[$iin]=$s6
933	fi
934	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
935	then
936	found=false
937	for actual in $output_list
938	do
939	for formal in $s3
940	do
941	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
942	done
943	done
944	if [[ $found = true ]]
945	then
946	(( iout = iout + 1 ))
947	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
948	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
949	fi
950	elif [[ "$s2a" != in && "$s2a" != out ]]
951	then
952	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
953	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
954	locat=connect; exit
955	fi
956	IFS="$IFSALT"
957	fi
958	done < $config_file
959
960	else
961
962
963	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
964	[[ $silent = false ]] && printf "..."
965	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
966	export interpreted_config_file=.icf.$RANDOM
967
968
969
970	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
971	# VERFUEGUNG STELLEN
972	cat > .mrun_environment << %%END%%
973	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
974	config_file = '$config_file', do_remote = '$do_remote',
975	do_trace = '$do_trace', host = '$host',
976	input_list = '$input_list', icf = '$interpreted_config_file',
977	localhost = '$localhost', output_list = '$output_list' /
978
979	%%END%%
980
981	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
982	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
983	mrun_memory=$memory
984	mrun_group_number=$group_number
985	mrun_cpumax=$cpumax
986	mrun_numprocs=$numprocs
987
988	if [[ $localhost_realname = "sx-fep" ]]
989	then
990	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
991	else
992
993	if [[ "$host" != $localhost ]]
994	then
995
996	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
997	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
998	if [[ $? != 0 ]]
999	then
1000	printf "\n\n +++ no interpret_config found"
1001	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1002	locat=interpret_config; exit
1003	fi
1004	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1005	$interpret_config_executable
1006
1007	else
1008
1009	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1010	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1011	then
1012	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1013	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1014	locat=interpret_config; exit
1015	else
1016	interpret_config${block}.x
1017	fi
1018
1019	fi
1020	fi
1021	rm .mrun_environment
1022
1023
1024	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1025	chmod u+x $interpreted_config_file
1026	export PATH=$PATH:.
1027	. $interpreted_config_file
1028	rm $interpreted_config_file
1029
1030
1031	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1032	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1033	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1034	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1035	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1036
1037	fi
1038
1039
1040	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1041	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1042	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1043	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1044	if [[ "$SOURCES_COMPLETE" = "" ]]
1045	then
1046
1047	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1048	# VEREINBART WURDE
1049	source_path=""
1050	line=""
1051	grep "%source_path" $config_file > tmp_mrun
1052	while read line
1053	do
1054	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1055	then
1056	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1057	then
1058	global_source_path=`echo $line \| cut -d" " -f2`
1059	fi
1060	fi
1061	done < tmp_mrun
1062
1063	line=""
1064	found=false
1065	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1066	while read line
1067	do
1068	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1069	then
1070	if [[ $found = true ]]
1071	then
1072	printf "\n\n +++ more than one source path found in configuration file"
1073	printf "\n for local host \"$localhost\" "
1074	locat=source_path; exit
1075	fi
1076	source_path=`echo $line \| cut -d" " -f2`
1077	found=true
1078	fi
1079	done < tmp_mrun
1080	rm tmp_mrun
1081
1082	if [[ "$source_path" = "" ]]
1083	then
1084	if [[ "$global_source_path" != "" ]]
1085	then
1086	source_path=$global_source_path
1087	else
1088	printf "\n\n +++ no source path found in configuration file"
1089	printf "\n for local host \"$localhost\" "
1090	locat=source_path; exit
1091	fi
1092	fi
1093	eval source_path=$source_path
1094
1095	if [[ ! -d $source_path ]]
1096	then
1097	printf "\n\n +++ source path \"$source_path\" on local host"
1098	printf "\n \"$localhost\" does not exist"
1099	locat=source_path; exit
1100	fi
1101
1102	fi
1103
1104
1105	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1106	# DURCH OPTION -G MITGETEILT)
1107	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1108	then
1109	global_revision=`svnversion $source_path 2>/dev/null`
1110	global_revision="Rev: $global_revision"
1111	fi
1112
1113
1114	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1115	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1116	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1117	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1118	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1119	if [[ -n $host && "$host" != $localhost ]]
1120	then
1121	do_batch=true
1122	do_remote=true
1123	case $host in
1124	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1125	(*) printf "\n"
1126	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1127	printf "\n is not available"
1128	locat=nqs; (( iec = 0 )); exit;;
1129	esac
1130	else
1131	host=$localhost
1132	fi
1133
1134
1135	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1136	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1137	then
1138
1139	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1140	if [[ ! -n $numprocs ]]
1141	then
1142	printf "\n"
1143	printf "\n +++ option \"-K parallel\" requires additional specification"
1144	printf "\n of the number of processors to be used by"
1145	printf "\n mrun-option \"-X\" or by environment-variable"
1146	printf "\n \"numprocs\" in the configuration file"
1147	locat=numprocs; (( iec = 0 )); exit
1148	fi
1149
1150	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1151	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1152	# GESAMTPROZESSORANZAHL IST
1153	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmkisti \|\| $host = ibms ]]
1154	then
1155	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1156	(( ival = $tasks_per_node ))
1157	(( pes = numprocs ))
1158	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1159	# then
1160	# (( pes = pes - 1 ))
1161	# fi
1162	(( ii = pes / ival ))
1163	if (( pes - ii * ival > 0 ))
1164	then
1165	printf "\n"
1166	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1167	printf "\n divisor of the total number of processors (option \"-X\")"
1168	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1169	locat=tasks_per_node; (( iec = 0 )); exit
1170	fi
1171	fi
1172
1173	# IBMY HAT NUR EINEN KNOTEN
1174	if [[ $host = ibmy ]]
1175	then
1176	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1177	then
1178	printf "\n"
1179	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1180	printf "\n total number of processors (option \"-X\")"
1181	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1182	locat=tasks_per_node; (( iec = 0 )); exit
1183	fi
1184	fi
1185
1186	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1187	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1188	# if [[ $use_openmp = true ]]
1189	# then
1190	# threads_per_task=$tasks_per_node
1191	# tasks_per_node=1
1192	# fi
1193
1194	# SETTINGS FOR SUBJOB-COMMAND
1195	TOPT="-T $tasks_per_node"
1196	OOPT="-O $threads_per_task"
1197
1198	# GESAMTZAHL DER KNOTEN BESTIMMEN
1199	if [[ "$tasks_per_node" != "" ]]
1200	then
1201	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1202	fi
1203
1204	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1205	# SETZEN
1206	if [[ $node_usage = default ]]
1207	then
1208	if [[ $host = ibms ]]
1209	then
1210	node_usage=shared
1211	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1212	then
1213	node_usage=singlejob
1214	else
1215	node_usage=not_shared
1216	fi
1217	fi
1218
1219	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1220	then
1221	printf "\n"
1222	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1223	printf "\n \"shared\" or \"not_shared\""
1224	locat=tasks_per_node; (( iec = 0 )); exit
1225	fi
1226
1227	fi
1228
1229	# PRUEFEN, OB HOSTFILE EXISTIERT
1230	if [[ -n $hostfile ]]
1231	then
1232	if [[ ! -f $hostfile ]]
1233	then
1234	printf "\n"
1235	printf "\n +++ hostfile \"$hostfile\" does not exist"
1236	locat=hostfile; exit
1237	fi
1238	fi
1239
1240	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1241	if [[ $host = ibmy && $do_remote = false ]]
1242	then
1243	if [[ ! -f $HOME/.rhosts ]]
1244	then
1245	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1246	printf "\n\n *** file:"
1247	printf "\n $HOME/.rhosts"
1248	printf "\n was created\n"
1249	fi
1250	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1251	then
1252	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1253	printf "\n\n *** file:"
1254	printf "\n $HOME/.rhosts"
1255	printf "\n was extended by the name of the current host\n"
1256	fi
1257	fi
1258
1259
1260
1261	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1262	if [[ $queue = none ]]
1263	then
1264	case $host in
1265	(ibmh) queue=no_class;;
1266	(ibmkisti) queue=class.32plus;;
1267	(ibmy) queue=parallel;;
1268	(lckyoto) queue=ph;;
1269	(lcsgib) queue=bigq;;
1270	(lcsgih) queue=bigq;;
1271	(lctit) queue=S;;
1272	(nech) queue=none;;
1273	(necriam) queue=SP;;
1274	(unics) queue=unics;;
1275	esac
1276	fi
1277
1278
1279	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1280	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1281	# ERMITTELN
1282	(( i = 0 ))
1283	while (( i < iin ))
1284	do
1285	(( i = i + 1 ))
1286	(( maxcycle = 0 ))
1287
1288	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1289	if [[ "${actionin[$i]}" = di ]]
1290	then
1291	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1292	# REM-MASCHINE AUSWERTEN
1293	eval filename=${pathin[$i]}/${endin[$i]}
1294	else
1295	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1296	# REM-MASCHINE AUSWERTEN
1297	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1298	fi
1299
1300	# PRUEFEN AUF VORHANDENSEIN
1301	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1302	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1303	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1304	then
1305	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1306	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1307	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1308	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1309	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1310	if [[ "${transin[$i]}" != "locopt" ]]
1311	then
1312	printf "\n\n +++ INPUT-file: "
1313	if [[ "${extin[$i]}" = "" ]]
1314	then
1315	printf "\n $filename"
1316	else
1317	printf "\n $filename.${extin[$i]}"
1318	fi
1319	printf "\n does not exist\n"
1320	locat=input; exit
1321	else
1322	transin[$i]="unavailable"
1323	fi
1324	else
1325
1326	# ZYKLUSNUMMER FESTSTELLEN
1327	ls -1 -d $filename > filelist 2>/dev/null
1328	ls -1 -d $filename.* >> filelist 2>/dev/null
1329	while read zeile
1330	do
1331	cycle=$(print $zeile \| cut -f2 -d".")
1332	if [[ "$cycle" = "$zeile" ]]
1333	then
1334	(( icycle = 0 ))
1335	elif [[ "$cycle" = "${extin[$i]}" ]]
1336	then
1337	(( icycle = 0 ))
1338	else
1339	(( icycle = $cycle ))
1340	fi
1341	if (( icycle > maxcycle ))
1342	then
1343	(( maxcycle = icycle ))
1344	file_to_be_used=$zeile
1345	fi
1346	done <filelist
1347	rm filelist
1348
1349	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1350	if (( maxcycle > 0 ))
1351	then
1352	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1353	then
1354	filename=${filename}.$maxcycle.${extin[$i]}
1355	else
1356	filename=${filename}.$maxcycle
1357	fi
1358	else
1359	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1360	then
1361	filename=${filename}.${extin[$i]}
1362	fi
1363	fi
1364
1365	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1366	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1367	absnamein[$i]=$filename
1368	if (( maxcycle > 0 ))
1369	then
1370	if [[ "${actionin[$i]}" = di ]]
1371	then
1372	frelin[$i]=${endin[$i]}.$maxcycle
1373	else
1374	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1375	fi
1376	else
1377	if [[ "${actionin[$i]}" = di ]]
1378	then
1379	frelin[$i]=${endin[$i]}
1380	else
1381	frelin[$i]=${afname}${endin[$i]}
1382	fi
1383	fi
1384
1385	fi
1386	done
1387
1388
1389	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1390	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1391	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1392	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1393	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1394	(( i = 0 ))
1395	while (( i < iout ))
1396	do
1397	(( i = i + 1 ))
1398	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1399	then
1400	if [[ "${actionout[$i]}" = tr ]]
1401	then
1402	actionout[$i]=""
1403	elif [[ "${actionout[$i]}" = trpe ]]
1404	then
1405	actionout[$i]=pe
1406	elif [[ "${actionout[$i]}" = tra ]]
1407	then
1408	actionout[$i]=a
1409	fi
1410	(( maxcycle = 0 ))
1411	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1412	eval catalogname=${pathout[$i]}
1413	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1414	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1415	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1416	then
1417
1418	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1419	if cat /dev/null > $filename
1420	then
1421	rm $filename
1422	else
1423
1424	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1425	if [[ ! -d $catalogname ]]
1426	then
1427	if mkdir -p $catalogname
1428	then
1429	printf "\n\n *** directory:"
1430	printf "\n $catalogname"
1431	printf "\n was created\n"
1432	else
1433	printf "\n\n +++ OUTPUT-file:"
1434	printf "\n $filename"
1435	printf "\n cannot be created, because directory does not exist"
1436	printf "\n and cannot be created either"
1437	printf "\n"
1438	locat=output ; exit
1439	fi 2>/dev/null
1440	else
1441	printf "\n\n +++ OUTPUT-file:"
1442	printf "\n $filename"
1443	printf "\n cannot be created, although directory exists"
1444	printf "\n"
1445	locat=output ; exit
1446	fi
1447	fi 2>/dev/null
1448	else
1449
1450	# ZYKLUSNUMMER FESTSTELLEN
1451	ls -1 -d $filename > filelist 2>/dev/null
1452	ls -1 -d $filename.* >> filelist 2>/dev/null
1453	while read zeile
1454	do
1455	cycle=$(print $zeile \| cut -f2 -d".")
1456	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1457	then
1458	(( icycle = 1 ))
1459	else
1460	(( icycle = $cycle + 1 ))
1461	fi
1462	if (( icycle > maxcycle ))
1463	then
1464	(( maxcycle = icycle ))
1465	fi
1466	done <filelist
1467	rm filelist
1468	fi
1469
1470	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1471	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1472	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1473	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1474	if [[ "${actionout[$i]}" != a ]]
1475	then
1476	if (( maxcycle > 0 ))
1477	then
1478	filename=${filename}.$maxcycle
1479	if cat /dev/null > $filename
1480	then
1481	rm $filename
1482	else
1483	printf "\n +++ OUTPUT-file:"
1484	printf "\n $filename"
1485	printf "\n cannot be created"
1486	locat=output ; exit
1487	fi
1488	fi
1489	else
1490	(( maxcycle = maxcycle - 1 ))
1491	if (( maxcycle > 0 ))
1492	then
1493	filename=${filename}.$maxcycle
1494	fi
1495	fi
1496
1497	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1498	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1499	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1500	pathout[$i]=$filename
1501	if (( maxcycle > 0 ))
1502	then
1503	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1504	else
1505	frelout[$i]=${fname}${endout[$i]}
1506	fi
1507
1508	fi
1509	done
1510
1511
1512	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1513	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1514	then
1515	if [[ "$dvr_inc" = "" ]]
1516	then
1517	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1518	printf "\n This is required for the dvrp_graphics package.\n"
1519	locat=dvr; exit
1520	fi
1521	if [[ "$dvr_lib" = "" ]]
1522	then
1523	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1524	printf "\n This is required for the dvrp_graphics package.\n"
1525	locat=dvr; exit
1526	fi
1527	fi
1528
1529
1530	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1531	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1532	# UEBERSETZT ZU WERDEN)
1533	if [[ "$mainprog" = "" && "$executable" = "" ]]
1534	then
1535	printf "\n +++ neither main program nor executable defined"
1536	locat=source; exit
1537	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1538	then
1539	printf "\n +++ main program as well as executable defined"
1540	locat=source; exit
1541	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1542	then
1543	do_compile=false
1544	fi
1545
1546
1547	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1548	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1549	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1550	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1551	then
1552	rm -rf SOURCES_FOR_RUN_$fname
1553	mkdir SOURCES_FOR_RUN_$fname
1554	fi
1555
1556
1557	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1558	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1559	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1560	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1561	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1562	then
1563
1564	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1565	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1566
1567
1568	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1569	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1570	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1571	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1572	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1573	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1574	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1575	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1576	# GESAMMELT
1577	if [[ "$source_list" = WRITE_PERMIT ]]
1578	then
1579
1580	source_list=""
1581	cd $source_path
1582
1583
1584	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1585	Names=$(ls -1 *.f90 2>&1)
1586	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1587	Names=$(ls -1 *.F90 2>&1)
1588	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1589	Names=$(ls -1 *.F 2>&1)
1590	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1591	Names=$(ls -1 *.f 2>&1)
1592	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1593	Names=$(ls -1 *.c 2>&1)
1594	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1595
1596
1597	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1598	for dateiname in $Filenames
1599	do
1600	if [[ -w $dateiname ]]
1601	then
1602	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1603	then
1604	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1605	source_list=$source_list"$dateiname "
1606	fi
1607	fi
1608	done
1609
1610	cd - > /dev/null
1611
1612
1613	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1614	then
1615
1616	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1617	source_list=""
1618	cd $source_path
1619
1620
1621	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1622	if [[ ! -d .svn ]]
1623	then
1624	printf "\n\n +++ source directory"
1625	printf "\n \"$source_path\" "
1626	printf "\n is not under control of \"subversion\"."
1627	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1628	fi
1629
1630
1631	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1632	Filenames=""
1633	svn status > tmp_mrun
1634	while read line
1635	do
1636	firstc=`echo $line \| cut -c1`
1637	if [[ $firstc = M \|\| $firstc = "?" ]]
1638	then
1639	Name=`echo "$line" \| cut -c8-`
1640	extension=`echo $Name \| cut -d. -f2`
1641	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1642	then
1643	Filenames="$Filenames "$Name
1644	fi
1645	fi
1646	done < tmp_mrun
1647
1648
1649	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1650	for dateiname in $Filenames
1651	do
1652	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1653	source_list=$source_list"$dateiname "
1654	done
1655
1656	cd - > /dev/null
1657
1658
1659	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1660	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1661	# VORHANDEN
1662	elif [[ "$source_list" != "" && $restart_run != true ]]
1663	then
1664
1665	cd $source_path
1666
1667	for filename in $source_list
1668	do
1669
1670	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1671	if [[ $(print $filename \| grep -c "/") != 0 ]]
1672	then
1673	printf "\n +++ source code file: $filename"
1674	printf "\n must not contain (\"/\") "
1675	locat=source; exit
1676	fi
1677
1678	if [[ ! -f $filename ]]
1679	then
1680	printf "\n +++ source code file: $filename"
1681	printf "\n does not exist"
1682	locat=source; exit
1683	else
1684	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1685	fi
1686
1687	done
1688
1689	cd - > /dev/null
1690
1691	fi
1692
1693
1694	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1695	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1696	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1697	if [[ $restart_run != true ]]
1698	then
1699
1700	if [[ ! -f "$source_path/$mainprog" ]]
1701	then
1702	printf "\n\n +++ main program: $mainprog"
1703	printf "\n does not exist in source directory"
1704	printf "\n \"$source_path\"\n"
1705	locat=source; exit
1706	else
1707	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1708	then
1709	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1710	source_list=${mainprog}" $source_list"
1711	fi
1712	fi
1713	fi
1714
1715
1716	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1717	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1718	if [[ "$restart_run" != true ]]
1719	then
1720	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1721	if [[ ! -f $makefile ]]
1722	then
1723	printf "\n +++ file \"$makefile\" does not exist"
1724	locat=make; exit
1725	else
1726	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1727	fi
1728	fi
1729
1730
1731	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1732	if [[ $restart_run != true && "$add_source_path" != "" ]]
1733	then
1734
1735	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1736	if [[ ! -d $add_source_path ]]
1737	then
1738	printf "\n\n +++ WARNING: additional source code directory"
1739	printf "\n \"$add_source_path\" "
1740	printf "\n does not exist or is not a directory."
1741	printf "\n No source code will be used from this directory!\n"
1742	add_source_path=""
1743	sleep 3
1744	else
1745
1746	cd $add_source_path
1747	found=false
1748
1749	Names=$(ls -1 *.f90 2>&1)
1750	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1751	Names=$(ls -1 *.F90 2>&1)
1752	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1753	Names=$(ls -1 *.F 2>&1)
1754	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1755	Names=$(ls -1 *.f 2>&1)
1756	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1757	Names=$(ls -1 *.c 2>&1)
1758	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1759
1760	cd - > /dev/null
1761	cd SOURCES_FOR_RUN_$fname
1762
1763	# COPY MAKEFILE IF EXISTING
1764	if [[ -f $add_source_path/Makefile ]]
1765	then
1766	printf "\n\n *** user Makefile from directory"
1767	printf "\n \"$add_source_path\" is used \n"
1768	sleep 1
1769	cp $add_source_path/Makefile .
1770	fi
1771
1772	for dateiname in $AddFilenames
1773	do
1774	if [[ -f $dateiname ]]
1775	then
1776	printf "\n +++ source code file \"$dateiname\" found in additional"
1777	printf "\n source code directory \"$add_source_path\" "
1778	printf "\n but was also given with option \"-s\" which means that it should be taken"
1779	printf "\n from directory \"$source_path\"."
1780	locat=source; exit
1781	fi
1782
1783	cp $add_source_path/$dateiname .
1784	source_list="$source_list $dateiname"
1785
1786	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1787	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1788	then
1789	printf "\n\n +++ user file \"$dateiname\" "
1790	printf "\n is not listed in Makefile \n"
1791	locat=source; exit
1792	else
1793
1794	# Default User-Interface von der Liste entfernen, falls Datei
1795	# ein User-Interface enthaelt
1796	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1797	# then
1798	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1799	# then
1800	# rm -rf user_interface.f90
1801	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1802	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1803	# printf "\n since a user-interface is found in file"
1804	# printf "\n \"$add_source_path/$dateiname\" \n"
1805	# sleep 3
1806	# else
1807	if [[ $found = false ]]
1808	then
1809	found=true
1810	printf "\n\n *** following user file(s) added to the"
1811	printf " files to be translated:\n "
1812	fi
1813	printf "$dateiname "
1814	sleep 0.5
1815	fi
1816	done
1817	[[ $found = true ]] && printf "\n"
1818	cd - > /dev/null
1819	fi
1820	fi
1821
1822
1823	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1824	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1825	if [[ $restart_run != true && -n $package_list ]]
1826	then
1827
1828	cd $source_path
1829
1830	for package in $package_list
1831	do
1832
1833	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1834
1835	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1836	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1837	# LIEFERT
1838	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1839
1840
1841	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1842	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1843	for source_list_name in $package_source_list
1844	do
1845	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1846	then
1847
1848	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1849	ending=`echo $source_list_name \| cut -f2 -d.`
1850	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1851	then
1852	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1853	source_list="$source_list $source_list_name"
1854	fi
1855	fi
1856	done
1857	done
1858
1859	cd - > /dev/null
1860	fi
1861
1862
1863	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1864	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1865	# if [[ "$restart_run" != true ]]
1866	# then
1867	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1868	# if [[ ! -f $makefile ]]
1869	# then
1870	# printf "\n +++ file \"$makefile\" does not exist"
1871	# locat=make; exit
1872	# else
1873	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1874	# fi
1875	# fi
1876
1877	fi # do_compile=true
1878
1879
1880	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1881	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1882	if [[ $do_compile = true ]]
1883	then
1884
1885	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1886	# ZUSAMMENSETZEN
1887	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1888	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1889	then
1890	cpp_options="${cpp_options},-D__ibm=__ibm"
1891	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1892	then
1893	cpp_options="$cpp_options -D__nec"
1894	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1895	then
1896	cpp_options="$cpp_options -D__lc"
1897	else
1898	cpp_options="$cpp_options -D__$localhost"
1899	fi
1900
1901	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1902	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1903	then
1904	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1905	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1906	else
1907	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1908	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1909	fi
1910
1911	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1912	if [[ -n $package_list ]]
1913	then
1914	for package in $package_list
1915	do
1916	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1917	then
1918	if [[ $package != "dvrp_graphics+1PE" ]]
1919	then
1920	cpp_options="${cpp_options},-D__$package=__$package"
1921	else
1922	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1923	export use_seperate_pe_for_dvrp_output=true
1924	fi
1925	else
1926	if [[ $package != "dvrp_graphics+1PE" ]]
1927	then
1928	cpp_options="$cpp_options -D__$package"
1929	else
1930	cpp_options="$cpp_options -D__dvrp_graphics"
1931	export use_seperate_pe_for_dvrp_output=true
1932	fi
1933	fi
1934	done
1935	fi
1936
1937	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1938	if [[ -n $cpp_opts ]]
1939	then
1940	for popts in $cpp_opts
1941	do
1942	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1943	then
1944	cpp_options="${cpp_options},-D__$popts=__$popts"
1945	else
1946	cpp_options="$cpp_options -D__$popts"
1947	fi
1948	done
1949	fi
1950
1951	else
1952
1953
1954	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1955	if [[ $do_remote = false ]]
1956	then
1957	if [[ ! -f $executable ]]
1958	then
1959	printf "\n +++ executable file: $executable"
1960	printf "\n does not exist"
1961	locat=executable; exit
1962	fi
1963	fi
1964	fi
1965
1966
1967	# JOBMODUS FESTSTELLEN
1968	if [[ "$ENVIRONMENT" = BATCH ]]
1969	then
1970	jobmo=BATCH
1971	else
1972	jobmo=INTERACTIVE
1973	fi
1974
1975
1976	# no interactive runs on lctit
1977	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1978	then
1979	printf "\n +++ no interactive runs allowed on host \"$host\" "
1980	printf "\n please submit batch job using mrun option \"-b\" \n"
1981	locat=normal; exit
1982	fi
1983
1984
1985	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1986	# DURCH BENUTZER ANDERWEITIG VEREINBART
1987	if [[ "$compiler_name" = "" ]]
1988	then
1989
1990	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1991	locat=compiler_name; exit
1992
1993	fi
1994
1995
1996	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1997	[[ $localhost = necriam ]] && compiler_name=mpif90
1998
1999
2000
2001	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2002	kennung=$RANDOM
2003	if [[ "$tmp_user_catalog" = "" ]]
2004	then
2005	if [[ $localhost = ibmh ]]
2006	then
2007	tmp_user_catalog=$SCRATCH
2008	elif [[ $localhost = nech ]]
2009	then
2010	tmp_user_catalog=$WRKSHR
2011	else
2012	tmp_user_catalog=/tmp
2013	fi
2014	fi
2015	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2016
2017
2018	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2019	# BESTIMMEN
2020	if [[ "$tmp_data_catalog" = "" ]]
2021	then
2022	if [[ $localhost = nech ]]
2023	then
2024	tmp_data_catalog=$WRKSHR/mrun_restart_data
2025	else
2026	tmp_data_catalog=/tmp/mrun_restart_data
2027	fi
2028	fi
2029
2030
2031	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2032	# ERSETZEN
2033	if [[ $do_remote = false && $do_compile = true ]]
2034	then
2035	eval fopts=\"$fopts\"
2036	eval lopts=\"$lopts\"
2037	fi
2038
2039
2040
2041	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2042	fopts="$fopts $netcdf_inc $dvr_inc"
2043	lopts="$lopts $netcdf_lib $dvr_lib"
2044	ROPTS="$ropts"
2045	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2046	then
2047	XOPT="-X $numprocs"
2048	fi
2049
2050
2051
2052	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2053	# GRAMM BENOETIGT
2054	done=false
2055	while [[ $done = false ]]
2056	do
2057	cputime=$cpumax
2058	if (( $cputime == 0 ))
2059	then
2060	if [[ $do_batch = true ]]
2061	then
2062	printf "\n +++ cpu-time is undefined"
2063	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2064	printf "\n >>> "
2065	read cputime 1>/dev/null 2>&1
2066	else
2067	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2068	fi
2069	else
2070	done=true
2071	fi
2072	cpumax=$cputime
2073	done
2074
2075	(( minuten = cputime / 60 ))
2076	(( sekunden = cputime - minuten * 60 ))
2077
2078
2079	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2080	if [[ $do_batch = true ]]
2081	then
2082	done=false
2083	while [[ $done = false ]]
2084	do
2085	if (( memory == 0 ))
2086	then
2087	printf "\n +++ memory demand is undefined"
2088	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2089	printf "\n >>> "
2090	read memory 1>/dev/null 2>&1
2091	else
2092	done=true
2093	fi
2094	done
2095	fi
2096
2097
2098	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2099	if [[ $do_remote = true && -z $remote_username ]]
2100	then
2101	while [[ -z $remote_username ]]
2102	do
2103	printf "\n +++ username on remote host \"$host\" is undefined"
2104	printf "\n >>> Please type username:"
2105	printf "\n >>> "
2106	read remote_username
2107	done
2108	mc="$mc -u$remote_username"
2109	fi
2110
2111
2112	# set module load command and export for subjob
2113	if [[ "$modules" != "" ]]
2114	then
2115	if [[ $host = lctit ]]
2116	then
2117	export module_calls=". $modules"
2118	else
2119	export module_calls="module load ${modules};"
2120	fi
2121	fi
2122
2123	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2124	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2125	then
2126	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2127	then
2128	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2129	fi
2130	if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2131	then
2132	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2133	echo "*** module_calls = $module_calls"
2134	fi
2135	fi
2136
2137
2138	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2139	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2140	then
2141	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2142	then
2143	mpilib=mpt
2144	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2145	then
2146	mpilib=mvapich
2147	fi
2148	fi
2149
2150
2151
2152	###########################################################################
2153	# HEADER-AUSGABE
2154	###########################################################################
2155
2156
2157	calltime=$(date)
2158	printf "\n"
2159	# [[ $silent = false ]] && clear
2160	printf "#--------------------------------------------------------------# \n"
2161	printf "\| $version$calltime \| \n"
2162	printf "\| \| \n"
2163	spalte1="called on:"; spalte2=$localhost_realname
2164	printf "\| $spalte1$spalte2 \| \n"
2165	if [[ $local_compile = false ]]
2166	then
2167	if [[ $do_remote = true ]]
2168	then
2169	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2170	else
2171	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2172	fi
2173	else
2174	spalte1="compiling test only!"; spalte2=""
2175	fi
2176	printf "\| $spalte1$spalte2 \| \n"
2177	if [[ -n $numprocs ]]
2178	then
2179	spalte1="number of PEs:"; spalte2=$numprocs
2180	printf "\| $spalte1$spalte2 \| \n"
2181	fi
2182	if [[ -n $tasks_per_node ]]
2183	then
2184	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2185	printf "\| $spalte1$spalte2 \| \n"
2186	fi
2187	if [[ $use_openmp = true ]]
2188	then
2189	spalte1="threads per task:"; spalte2="$threads_per_task"
2190	printf "\| $spalte1$spalte2 \| \n"
2191	fi
2192	printf "\| \| \n"
2193	if [[ $do_compile = true ]]
2194	then
2195	if [[ "$mopts" != "" ]]
2196	then
2197	spalte1="make options:"; spalte2=$mopts
2198	printf "\| $spalte1$spalte2 \| \n"
2199	zeile=$(echo "$mopts" \| cut -c41-)
2200	while [[ "$zeile" != "" ]]
2201	do
2202	spalte1=""
2203	spalte2=$zeile
2204	printf "\| $spalte1$spalte2 \| \n"
2205	zeile=$(echo "$zeile" \| cut -c41-)
2206	done
2207	fi
2208
2209	spalte1="cpp directives:"; spalte2=$cpp_options
2210	printf "\| $spalte1$spalte2 \| \n"
2211	zeile=$(echo "$cpp_options" \| cut -c41-)
2212	while [[ "$zeile" != "" ]]
2213	do
2214	spalte1=""
2215	spalte2=$zeile
2216	printf "\| $spalte1$spalte2 \| \n"
2217	zeile=$(echo "$zeile" \| cut -c41-)
2218	done
2219
2220	spalte1="compiler options:"; spalte2="$fopts"
2221	printf "\| $spalte1$spalte2 \| \n"
2222	zeile=$(echo "$fopts" \| cut -c41-)
2223	while [[ "$zeile" != "" ]]
2224	do
2225	spalte1=""
2226	spalte2=$zeile
2227	printf "\| $spalte1$spalte2 \| \n"
2228	zeile=$(echo "$zeile" \| cut -c41-)
2229	done
2230
2231	spalte1="linker options:"; spalte2=$lopts
2232	printf "\| $spalte1$spalte2 \| \n"
2233	zeile=$(echo "$lopts" \| cut -c41-)
2234	while [[ "$zeile" != "" ]]
2235	do
2236	spalte1=""
2237	spalte2=$zeile
2238	printf "\| $spalte1$spalte2 \| \n"
2239	zeile=$(echo "$zeile" \| cut -c41-)
2240	done
2241
2242	spalte1="modules to be load:"; spalte2=$modules
2243	printf "\| $spalte1$spalte2 \| \n"
2244	zeile=$(echo "$modules" \| cut -c41-)
2245	while [[ "$zeile" != "" ]]
2246	do
2247	spalte1=""
2248	spalte2=$zeile
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$zeile" \| cut -c41-)
2251	done
2252
2253	spalte1="main program":; spalte2=$mainprog
2254	printf "\| $spalte1$spalte2 \| \n"
2255	else
2256	spalte1=executable:; spalte2=$executable
2257	printf "\| $spalte1$spalte2 \| \n"
2258	fi
2259	printf "\| \| \n"
2260	spalte1="base name of files":; spalte2=$fname
2261	printf "\| $spalte1$spalte2 \| \n"
2262	if [[ $fname != $afname ]]
2263	then
2264	spalte1="base name of input files":; spalte2=$afname
2265	printf "\| $spalte1$spalte2 \| \n"
2266	fi
2267	spalte1="INPUT control list":; spalte2=$input_list
2268	printf "\| $spalte1$spalte2 \| \n"
2269	spalte1="OUTPUT control list":; spalte2=$output_list
2270	printf "\| $spalte1$spalte2 \| \n"
2271
2272	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2273	then
2274	spalte1="memory demand / PE":; spalte2="$memory MB"
2275	printf "\| $spalte1$spalte2 \| \n"
2276	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2277	printf "\| $spalte1$spalte2 \| \n"
2278	fi
2279
2280	if [[ $do_compile = true ]]
2281	then
2282	printf "\| \| \n"
2283	printf "\| Files to be compiled: \| \n"
2284	zeile=$source_list
2285	while [[ "$zeile" != "" ]]
2286	do
2287	spalte3=$zeile
2288	printf "\| $spalte3 \| \n"
2289	zeile=$(echo "$zeile" \| cut -c61-)
2290	done
2291	fi
2292	printf "#--------------------------------------------------------------#"
2293
2294
2295
2296	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2297	if [[ $do_trace = true ]]
2298	then
2299	(( i = 0 ))
2300	while (( i < iin ))
2301	do
2302	(( i = i + 1 ))
2303	if (( i == 1 ))
2304	then
2305	printf "\n\n >>> INPUT-file assignments:\n"
2306	fi
2307	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2308	done
2309	(( i = 0 ))
2310	while (( i < iout ))
2311	do
2312	(( i = i + 1 ))
2313	if (( i == 1 ))
2314	then
2315	printf "\n\n >>> OUTPUT-file assignments:\n"
2316	fi
2317	printf "\n ${localout[$i]} : ${pathout[$i]}"
2318	done
2319	(( i = 0 ))
2320	while (( i < iic ))
2321	do
2322	(( i = i + 1 ))
2323	if (( i == 1 ))
2324	then
2325	printf "\n\n >>> INPUT-commands:\n"
2326	fi
2327	printf "\n ${in_command[$i]}"
2328	done
2329	(( i = 0 ))
2330	while (( i < ioc ))
2331	do
2332	(( i = i + 1 ))
2333	if (( i == 1 ))
2334	then
2335	printf "\n\n >>> OUTPUT-commands:\n"
2336	fi
2337	printf "\n ${out_command[$i]}"
2338	done
2339	fi
2340
2341
2342	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2343	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2344	then
2345	antwort=dummy
2346	printf "\n\n"
2347	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2348	do
2349	printf " >>> everything o.k. (y/n) ? "
2350	read antwort
2351	done
2352	if [[ $antwort = n \|\| $antwort = N ]]
2353	then
2354	locat=user_abort; (( iec = 0 )); exit
2355	fi
2356	if [[ $do_batch = true ]]
2357	then
2358	printf " >>> batch-job will be created and submitted"
2359	else
2360	if [[ $local_compile = false ]]
2361	then
2362	printf " >>> MRUN will now continue to execute on this machine"
2363	else
2364	printf " >>> a test compilation will now be carried out on this machine"
2365	fi
2366	fi
2367	fi
2368
2369
2370
2371
2372	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2373	# CHENDE AKTIONEN DURCHGEFUEHRT
2374	if [[ $do_batch = false ]]
2375	then
2376
2377
2378	# TEMPORAEREN KATALOG ERZEUGEN
2379	mkdir -p $TEMPDIR
2380	chmod go+rx $TEMPDIR
2381	tmpcreate=true
2382
2383	# set striping on lustre file system
2384	# if [[ $localhost = lcsgih ]]
2385	# then
2386	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2387	# lfs getstripe $TEMPDIR
2388	# fi
2389
2390
2391	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2392	# TEMPORAERES VERZEICHNIS KOPIEREN
2393	if [[ $do_compile = true ]]
2394	then
2395
2396	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2397	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2398	if [[ $localhost = nech ]]
2399	then
2400	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2401	if mkdir -p $TEMPDIR_COMPILE
2402	then
2403	printf "\n *** \"$TEMPDIR_COMPILE\" "
2404	printf "\n is generated as temporary directory for cross compiling\n"
2405	else
2406	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2407	printf "\n needed for cross compilation failed"
2408	locat=compile
2409	exit
2410	fi
2411	else
2412	TEMPDIR_COMPILE=$TEMPDIR
2413	fi
2414
2415
2416	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2417	line=""
2418	grep "%depository_path" $config_file > tmp_mrun
2419	while read line
2420	do
2421	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2422	then
2423	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2424	then
2425	global_depository_path=`echo $line \| cut -d" " -s -f2`
2426	fi
2427	fi
2428	done < tmp_mrun
2429
2430	line=""
2431	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2432	while read line
2433	do
2434	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2435	then
2436	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2437	then
2438	local_depository_path=`echo $line \| cut -d" " -s -f2`
2439	fi
2440	fi
2441	done < tmp_mrun
2442
2443	if [[ "$local_depository_path" = "" ]]
2444	then
2445	if [[ "$global_depository_path" != "" ]]
2446	then
2447	local_depository_path=$global_depository_path
2448	else
2449	printf "\n\n +++ no depository path found in configuration file"
2450	printf "\n for local host \"$localhost\" "
2451	printf "\n please set \"\%depository_path\" in configuration file\n"
2452	locat=config_file; exit
2453	fi
2454	fi
2455	eval local_depository_path=$local_depository_path
2456	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2457	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2458
2459
2460	basename=`print $mainprog \| cut -f1 -d"."`
2461	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2462	if [[ ! -f $make_depository ]]
2463	then
2464	printf "\n"
2465	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2466	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2467	else
2468	cp $make_depository $TEMPDIR_COMPILE
2469	cd $TEMPDIR_COMPILE
2470	tar -xf $make_depository > /dev/null 2>&1
2471	cd - > /dev/null
2472	fi
2473
2474	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2475
2476	else
2477
2478	cp $executable ${TEMPDIR}/a.out
2479
2480	fi
2481
2482
2483	# WECHSEL IN TEMPORAEREN KATALOG
2484	cd $TEMPDIR
2485	printf "\n *** changed to temporary directory: $TEMPDIR"
2486
2487
2488	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2489	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2490	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2491	# ERMITTELN
2492	(( i = 0 ))
2493	while (( i < iout ))
2494	do
2495	(( i = i + 1 ))
2496	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2497	then
2498	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2499	else
2500	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2501	fi
2502	done
2503
2504
2505	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2506	if [[ $do_compile = true ]]
2507	then
2508
2509
2510	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2511	printf "\n\n\n *** compilation starts \n$striche\n"
2512	printf " *** compilation with make using following options:\n"
2513	printf " make depository: $make_depository"
2514	if [[ "$mopts" != "" ]]
2515	then
2516	printf " make options: $mopts\n"
2517	fi
2518	printf " compilername: $compiler_name\n"
2519	printf " compiler options: $fopts\n"
2520	printf " preprocessor directives: $cpp_options \n"
2521	printf " linker options: $lopts \n"
2522	if [[ "$modules" != "" ]]
2523	then
2524	printf " modules to be load: $modules \n"
2525	fi
2526	printf " source code files: $source_list \n"
2527
2528	if [[ $localhost = nech ]]
2529	then
2530	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2531	cp $TEMPDIR_COMPILE/a.out .
2532	[[ $? != 0 ]] && compile_error=true
2533	rm -rf $TEMPDIR_COMPILE
2534	elif [[ $localhost = ibmh ]]
2535	then
2536	printf " compiler is called via ssh on \"plogin1\" \n"
2537	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2538	[[ ! -f a.out ]] && compile_error=true
2539	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2540	elif [[ $localhost = lcsgib ]]
2541	then
2542	printf " compiler is called via ssh on \"bicegate0\" \n"
2543	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2544	[[ ! -f a.out ]] && compile_error=true
2545	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2546	elif [[ $localhost = lcsgih ]]
2547	then
2548	printf " compiler is called via ssh on \"hicegate0\" \n"
2549	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2550	[[ ! -f a.out ]] && compile_error=true
2551	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2552	else
2553	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2554	[[ "$module_calls" != "" ]] && eval $module_calls
2555	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2556	fi
2557
2558	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2559	then
2560	printf "\n +++ error occured while compiling or linking"
2561	locat=compile
2562
2563	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2564	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2565	# then
2566	exit
2567	# else
2568	# locat=normal
2569	# fi
2570	else
2571	printf "$striche\n *** compilation finished \n"
2572	fi
2573	fi
2574
2575
2576	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2577	if [[ $local_compile = true ]]
2578	then
2579	cd $HOME
2580	rm -rf $TEMPDIR
2581	locat=local_compile; exit
2582	fi
2583
2584
2585	# BEREITSTELLEN DER INPUT-DATEIEN
2586	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2587	(( i = 0 ))
2588	while (( i < iin ))
2589	do
2590	(( i = i + 1 ))
2591	if (( i == 1 ))
2592	then
2593	printf "\n\n *** providing INPUT-files:\n$striche"
2594	fi
2595
2596
2597	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2598	if [[ "${transin[$i]}" = unavailable ]]
2599	then
2600	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2601	then
2602	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2603	printf "\n is not available!"
2604	else
2605	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2606	printf "\n is not available!"
2607	fi
2608	continue
2609	fi
2610
2611	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2612	files_for_pes=false; datentyp=file
2613	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2614	then
2615	files_for_pes=true; datentyp=directory
2616	actionin[$i]=""
2617	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2618	then
2619	actionin[$i]=""
2620	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2621	then
2622	files_for_pes=true; datentyp=directory
2623	actionin[$i]="ar"
2624	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2625	then
2626	actionin[$i]="ar"
2627	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2628	then
2629	files_for_pes=true; datentyp=directory
2630	actionin[$i]="fl"
2631	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2632	then
2633	actionin[$i]="fl"
2634	fi
2635
2636	if [[ $files_for_pes = true ]]
2637	then
2638	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2639	else
2640	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2641	fi
2642
2643	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2644	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2645	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2646	# SERVER ZU HOLEN
2647	if [[ "${actionin[$i]}" = fl ]]
2648	then
2649	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2650	if [[ $files_for_pes = false ]]
2651	then
2652	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2653	then
2654	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2655	got_tmp[$i]=true
2656	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2657	then
2658	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2659	printf "\n *** trying to use backup copy in \"$WORK\" "
2660	cp $WORK/${frelin[$i]} ${localin[$i]}
2661	else
2662	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2663	printf "\n or \"$tmp_data_catalog\" does not exist!"
2664	printf "\n *** trying to get copy from archive"
2665	actionin[$i]=ar
2666	fi
2667	else
2668	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2669	then
2670	mkdir ${localin[$i]}
2671	cd $tmp_data_catalog/${frelin[$i]}
2672	for file in $(ls *)
2673	do
2674	ln $file $TEMPDIR/${localin[$i]}
2675	done
2676	cd $TEMPDIR
2677	got_tmp[$i]=true
2678	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2679	then
2680	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2681	printf "\n *** trying to use backup copy in \"$WORK\" "
2682	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2683	else
2684	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2685	printf "\n or \"$tmp_data_catalog\" does not exist!"
2686	printf "\n *** trying to get copy from archive"
2687	actionin[$i]=ar
2688	fi
2689	fi
2690	fi
2691
2692
2693	# DATEI LIEGT AUF ARCHIV-SERVER
2694	if [[ "${actionin[$i]}" = ar ]]
2695	then
2696
2697	if [[ $files_for_pes = false ]]
2698	then
2699	printf "\n file will be restored from archive-system ($archive_system)!"
2700	else
2701	printf "\n directory will be restored from archive-system ($archive_system)!"
2702	fi
2703
2704	file_restored=false
2705
2706	if [[ $archive_system = asterix ]]
2707	then
2708	do_stagein=true
2709	(( stagein_anz = 0 ))
2710	while [[ $do_stagein = true ]]
2711	do
2712	if [[ $files_for_pes = false ]]
2713	then
2714	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2715	else
2716	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2717	fi
2718	cat STAGEIN_OUTPUT
2719	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2720	then
2721	file_restored=true
2722	do_stagein=false
2723	else
2724	(( stagein_anz = stagein_anz + 1 ))
2725	if (( stagein_anz == 10 ))
2726	then
2727	printf "\n +++ stagein stoped after 10 tries"
2728	locat=stage
2729	exit
2730	fi
2731	printf "\n +++ restoring from archive failed, trying again:"
2732	sleep 900
2733	fi
2734	done
2735	elif [[ $archive_system = DMF ]]
2736	then
2737	if [[ $files_for_pes = false ]]
2738	then
2739	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2740	locat=DMF
2741	exit
2742	else
2743	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2744	cp -r $ARCHIVE/${frelin[$i]} $PWD
2745	file_restored=true
2746	fi
2747	elif [[ $archive_system = tivoli ]]
2748	then
2749	if [[ $files_for_pes = false ]]
2750	then
2751	if [[ $localhost = lcsgih ]]
2752	then
2753	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2754	else
2755	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2756	fi
2757	else
2758	(( inode = 0 ))
2759	while (( inode < nodes ))
2760	do
2761	if [[ $localhost = lcsgih ]]
2762	then
2763	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2764	else
2765	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2766	fi
2767	(( inode = inode + 1 ))
2768	done
2769	fi
2770	file_restored=true
2771	elif [[ $archive_system = ut ]]
2772	then
2773	if [[ $files_for_pes = false ]]
2774	then
2775	cp $UT/${frelin[$i]} .
2776	else
2777	(( inode = 0 ))
2778	while (( inode < nodes ))
2779	do
2780	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2781	(( inode = inode + 1 ))
2782	done
2783	fi
2784	file_restored=true
2785	else
2786	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2787	locat=rearchive
2788	exit
2789	fi
2790
2791	if [[ $file_restored = true ]]
2792	then
2793
2794	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2795	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2796	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2797	if [[ $files_for_pes = false ]]
2798	then
2799	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2800	else
2801	mkdir $tmp_data_catalog/${frelin[$i]}
2802	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2803	fi
2804	got_tmp[$i]=true
2805
2806	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2807	mv ${frelin[$i]} ${localin[$i]}
2808
2809	fi
2810	fi
2811
2812
2813	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2814	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2815	then
2816
2817	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2818	then
2819
2820	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2821	printf "\n file will be provided for $numprocs processors"
2822	mkdir ${localin[$i]}
2823	ival=$numprocs
2824	(( ii = 0 ))
2825	while (( ii <= ival-1 ))
2826	do
2827	if (( ii < 10 ))
2828	then
2829	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2830	elif (( ii < 100 ))
2831	then
2832	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2833	elif (( ii < 1000 ))
2834	then
2835	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2836	else
2837	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2838	fi
2839	(( ii = ii + 1 ))
2840	done
2841
2842	else
2843
2844	if [[ $files_for_pes = true ]]
2845	then
2846
2847	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2848	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2849	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2850	# PER MOVE UMBENANNT WERDEN
2851	printf "\n providing $numprocs files for the respective processors"
2852	mkdir ${localin[$i]}
2853	if [[ $link_local_input = true ]]
2854	then
2855	printf " using ln -f\n"
2856	cd ${absnamein[$i]}
2857	for file in $(ls *)
2858	do
2859	ln -f $file ${localin[$i]}
2860	done
2861	cd $TEMPDIR
2862	fi
2863	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2864	if [[ ! -f "${localin[$i]}/_0000" ]]
2865	then
2866	if [[ $link_local_input = true ]]
2867	then
2868	printf " ln failed for .../_0000, using cp...\n"
2869	fi
2870	cp -r ${absnamein[$i]}/* ${localin[$i]}
2871	fi
2872
2873	else
2874	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2875	if [[ $link_local_input = true ]]
2876	then
2877	printf " using ln -f\n"
2878	ln -f ${absnamein[$i]} ${localin[$i]}
2879	fi
2880	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2881	if [[ ! -f "${localin[$i]}" ]]
2882	then
2883	if [[ $link_local_input = true ]]
2884	then
2885	printf " ln failed, using cp...\n"
2886	fi
2887	cp ${absnamein[$i]} ${localin[$i]}
2888	fi
2889	fi
2890	fi
2891	fi
2892
2893	done
2894	if (( i != 0 ))
2895	then
2896	printf "\n$striche\n *** all INPUT-files provided \n"
2897	fi
2898
2899
2900	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2901	(( i = 0 ))
2902	while (( i < iic ))
2903	do
2904	(( i = i + 1 ))
2905	if (( i == 1 ))
2906	then
2907	printf "\n\n *** execution of INPUT-commands:\n$striche"
2908	fi
2909	printf "\n >>> ${in_command[$i]}"
2910	eval ${in_command[$i]}
2911	if (( i == iic ))
2912	then
2913	printf "\n$striche\n"
2914	fi
2915	done
2916
2917
2918	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2919	cpurest=${cpumax}.
2920
2921
2922	# START DVR STREAMING SERVER
2923	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2924	then
2925	if [[ "$dvr_server" != "" ]]
2926	then
2927
2928	printf "\n\n *** preparing the dvr streaming server configuration file"
2929
2930	# Check, if a dvr server is already running
2931	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2932	if [[ "$running_dvrserver_id" != "" ]]
2933	then
2934
2935	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2936	printf "\n This server is used instead starting a new one!"
2937	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2938
2939	else
2940
2941	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2942	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2943	then
2944	cp ${PALM_BIN}/.dvrserver.config .
2945
2946	# Entering the BASEDIR, UID and GID into this file
2947	user_id=`id -u`
2948	group_id=`id -g`
2949	# & is needed as seperator, because TEMPDIR contains /
2950	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2951	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2952	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2953	mv .dvrserver.3 .dvrserver.config
2954	rm .dvrserver.1 .dvrserver.2
2955
2956	# Start dvr server in background, get his id and print on terminal
2957	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2958	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2959	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2960	local_dvrserver_running=.TRUE.
2961	else
2962	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2963	printf "\n \"$PALM_BIN\" "
2964	locat=dvr
2965	exit
2966	fi
2967
2968	fi
2969
2970	else
2971	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2972	fi
2973	fi
2974
2975
2976	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2977	# LESEN VON PALM)
2978	cat > ENVPAR << %%END%%
2979	&envpar run_identifier = '$fname', host = '$localhost',
2980	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2981	maximum_cpu_time_allowed = ${cpumax}.,
2982	revision = '$global_revision',
2983	local_dvrserver_running = $local_dvrserver_running /
2984
2985	%%END%%
2986
2987
2988	# PROGRAMMSTART
2989	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2990	PATH=$PATH:$TEMPDIR
2991
2992	# MPI debug option (argument checking, slows down execution due to increased latency)
2993	if [[ "$mpi_debug" = true ]]
2994	then
2995	export MPI_CHECK_ARGS=1
2996	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2997	fi
2998
2999	if [[ "$totalview" = true ]]
3000	then
3001	printf "\n *** totalview debugger will be used"
3002	tv_opt="-tv"
3003	else
3004	tv_opt=""
3005	fi
3006
3007	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3008	then
3009	if [[ "$ENVIRONMENT" = BATCH ]]
3010	then
3011	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3012	then
3013	printf "\n +++ debug is allowed in interactive mode only"
3014	locat=debug
3015	exit
3016	fi
3017	fi
3018	if [[ $localhost = decalpha ]]
3019	then
3020	dxladebug a.out
3021	elif [[ $localhost = ibmh ]]
3022	then
3023
3024	# SETUP THE IBM MPI ENVIRONMENT
3025	export MP_SHARED_MEMORY=yes
3026	export AIXTHREADS_SCOPE=S
3027	export OMP_NUM_THREADS=$threads_per_task
3028	export AUTHSTATE=files
3029	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3030
3031	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3032	export MP_ADAPTER_USE=shared
3033	export MP_CPU_USE=multiple
3034	export MP_TIMEOUT=1200
3035
3036	unset MP_TASK_AFFINITY
3037
3038	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3039	#(( ii = 1 ))
3040	#while (( ii <= $numprocs ))
3041	#do
3042	# echo $localhost_realname >> hostfile
3043	# (( ii = ii + 1 ))
3044	#done
3045	#export MP_HOSTFILE=hostfile
3046
3047	if [[ "$LOADLBATCH" = yes ]]
3048	then
3049	totalview poe a.out $ROPTS
3050	else
3051	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3052	export TVDSVRLAUNCHCMD=ssh
3053	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3054	fi
3055	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3056	then
3057	# CURRENTLY NO DEBUGGER ON LCSGI
3058	if [[ $run_coupled_model = true ]]
3059	then
3060	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3061	locat=debug
3062	exit
3063	else
3064	echo "no_coupling" > runfile_atmos
3065	fi
3066	(( ii = $numprocs / $threads_per_task ))
3067	export OMP_NUM_THREADS=$threads_per_task
3068	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3069	if [[ $threads_per_task != 1 ]]
3070	then
3071	printf "\n threads per task: $threads_per_task"
3072	fi
3073	printf "\n\n"
3074	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3075	then
3076	# export MPI_LAUNCH_TIMEOUT=360
3077	if [[ "$totalview" = true ]]
3078	then
3079	printf "\n running totalview debugger"
3080	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3081	else
3082	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3083	fi
3084	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3085	then
3086	# ulimit -s 300000 # A too large stack size causes problems
3087	# export MV2_NUM_PORTS=2
3088	# export MV2_CPU_MAPPING=0:1:2:3
3089	if [[ "$totalview" = true ]]
3090	then
3091	printf "\n running totalview debugger"
3092	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3093	else
3094	mpiexec ./a.out $ROPTS < runfile_atmos
3095	fi
3096	fi
3097	else
3098	printf "\n +++ no debug available on \"$localhost\" "
3099	printf "\n or not implemented in mrun so far"
3100	locat=debug
3101	exit
3102	fi
3103
3104	# end debug mode
3105	else
3106
3107	# normal execution
3108	if [[ -n $numprocs ]]
3109	then
3110	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3111	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3112	then
3113	# SETUP THE IBM MPI ENVIRONMENT
3114	if [[ $host != ibmh && $host != ibmkisti ]]
3115	then
3116	export MP_SHARED_MEMORY=yes
3117	export AIXTHREAD_SCOPE=S
3118	export OMP_NUM_THREADS=$threads_per_task
3119	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3120	export AUTHSTATE=files
3121	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3122	# export MP_PRINTENV=yes
3123
3124	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3125	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3126	export MP_WAIT_MODE=poll
3127	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3128	fi
3129
3130	if [[ $host = ibmkisti ]]
3131	then
3132	export LANG=en_US
3133	export MP_SHARED_MEMORY=yes
3134	if [[ $threads_per_task = 1 ]]
3135	then
3136	export MP_SINGLE_THREAD=yes
3137	export MEMORY_AFFINITY=MCM
3138	else
3139	export OMP_NUM_THREADS=$threads_per_task
3140	fi
3141	fi
3142
3143	if [[ "$LOADLBATCH" = yes ]]
3144	then
3145	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3146	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3147	then
3148	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3149	else
3150	if [[ $run_coupled_model = false ]]
3151	then
3152	if [[ "$ocean_file_appendix" = true ]]
3153	then
3154	echo "precursor_ocean" > runfile_atmos
3155	else
3156	echo "precursor_atmos" > runfile_atmos
3157	fi
3158	else
3159	(( iia = $numprocs_atmos / $threads_per_task ))
3160	(( iio = $numprocs_ocean / $threads_per_task ))
3161	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3162	printf "\n using $coupled_mode coupling"
3163	printf "\n\n"
3164	echo "coupled_run $iia $iio" > runfile_atmos
3165	fi
3166	poe ./a.out $ROPTS < runfile_atmos
3167	fi
3168	else
3169	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3170	then
3171	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3172	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3173	then
3174	if [[ -f $hostfile ]]
3175	then
3176	cp $hostfile hostfile
3177	else
3178	(( ii = 1 ))
3179	while (( ii <= $numprocs ))
3180	do
3181	echo $localhost_realname >> hostfile
3182	(( ii = ii + 1 ))
3183	done
3184	fi
3185	export MP_HOSTFILE=hostfile
3186	if [[ $run_coupled_model = false ]]
3187	then
3188	if [[ "$ocean_file_appendix" = true ]]
3189	then
3190	echo "precursor_ocean" > runfile_atmos
3191	else
3192	echo "precursor_atmos" > runfile_atmos
3193	fi
3194	else
3195	(( iia = $numprocs_atmos / $threads_per_task ))
3196	(( iio = $numprocs_ocean / $threads_per_task ))
3197	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3198	printf "\n using $coupled_mode coupling"
3199	printf "\n\n"
3200	echo "coupled_run $iia $iio" > runfile_atmos
3201	fi
3202	if [[ $localhost = ibmy ]]
3203	then
3204	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3205	else
3206	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3207	fi
3208
3209	else
3210	if [[ "$host_file" = "" ]]
3211	then
3212	printf "\n +++ no hostfile given in configuration file"
3213	locat=config_file
3214	exit
3215	else
3216	eval host_file=$host_file
3217	fi
3218	export MP_HOSTFILE=$host_file
3219	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3220	fi
3221	fi
3222	elif [[ $host = nech \|\| $host = necriam ]]
3223	then
3224	(( ii = nodes ))
3225	if [[ $ii = 1 ]]
3226	then
3227	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3228	export MPIPROGINF=YES
3229	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3230	echo "*** execution on single node with mpirun"
3231	mpirun -np $numprocs ./a.out $ROPTS
3232	else
3233	(( i = 0 ))
3234	while (( i < ii ))
3235	do
3236	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3237	(( i = i + 1 ))
3238	done
3239
3240	echo "#!/bin/sh" > mpi_exec_shell
3241	echo " " >> mpi_exec_shell
3242	echo "set -u" >> mpi_exec_shell
3243	echo "F_ERRCNT=0" >> mpi_exec_shell
3244	echo "MPIPROGINV=YES" >> mpi_exec_shell
3245	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3246	echo "cpurest=$cpurest" >> mpi_exec_shell
3247	echo "fname=$fname" >> mpi_exec_shell
3248	echo "localhost=$localhost" >> mpi_exec_shell
3249	echo "return_addres=$return_addres" >> mpi_exec_shell
3250	echo "return_username=$return_username" >> mpi_exec_shell
3251	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3252	echo "write_binary=$write_binary" >> mpi_exec_shell
3253	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3254	echo " " >> mpi_exec_shell
3255	echo "export F_ERRCNT" >> mpi_exec_shell
3256	echo "export MPIPROGINV" >> mpi_exec_shell
3257	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3258	echo "export cpurest" >> mpi_exec_shell
3259	echo "export fname" >> mpi_exec_shell
3260	echo "export localhost" >> mpi_exec_shell
3261	echo "export return_addres" >> mpi_exec_shell
3262	echo "export return_username" >> mpi_exec_shell
3263	echo "export tasks_per_node" >> mpi_exec_shell
3264	echo "export write_binary" >> mpi_exec_shell
3265	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3266	echo " " >> mpi_exec_shell
3267	echo "exec ./a.out" >> mpi_exec_shell
3268
3269	chmod u+x mpi_exec_shell
3270	export MPIPROGINF=YES
3271	mpirun -f multinode_config &
3272	wait
3273
3274	fi
3275	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3276	then
3277
3278	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3279	# DOES NOT EXIST
3280	if [[ $host != lcsgih && $host != lcsgib ]]
3281	then
3282	if [[ -f $hostfile ]]
3283	then
3284	cp $hostfile hostfile
3285	else
3286	(( ii = 1 ))
3287	while (( ii <= $numprocs / $threads_per_task ))
3288	do
3289	echo $localhost_realname >> hostfile
3290	(( ii = ii + 1 ))
3291	done
3292	fi
3293	eval zeile=\"`head -n $ii hostfile`\"
3294	printf "\n *** running on: $zeile"
3295	fi
3296
3297	(( ii = $numprocs / $threads_per_task ))
3298	export OMP_NUM_THREADS=$threads_per_task
3299	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3300	if [[ $threads_per_task != 1 ]]
3301	then
3302	# increase stack size to unlimited, because large runs
3303	# may abort otherwise
3304	ulimit -Ss unlimited
3305	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3306	fi
3307	if [[ $run_coupled_model = false ]]
3308	then
3309	if [[ "$ocean_file_appendix" = true ]]
3310	then
3311	echo "precursor_ocean" > runfile_atmos
3312	else
3313	echo "precursor_atmos" > runfile_atmos
3314	fi
3315	printf "\n\n"
3316	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3317	then
3318	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3319	then
3320	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3321	# export MPI_DSM_DISTRIBUTE=1
3322	# MPI_DSM_CPULIST: pin MPI processes to cores
3323	if [[ $use_openmp = false ]]
3324	then
3325	if [[ "$sgi_feature" = ice2 ]]
3326	then
3327	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3328	else
3329	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3330	fi
3331	else
3332	unset MPI_DSM_CPULIST
3333	fi
3334	# MPI_IB_RAILS: use both IB rails on ICE2
3335	export MPI_BUFS_PER_HOST=512
3336	export MPI_IB_RAILS=2
3337	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3338	export MPI_CONNECTIONS_THRESHOLD=8192
3339	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3340	export MPI_TYPE_DEPTH=20
3341	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3342	export MPI_GROUP_MAX=64
3343	echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3344	if [[ $use_openmp = true ]]
3345	then
3346	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3347	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3348	else
3349	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3350	fi
3351
3352	# next is test for openmp usage
3353	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3354	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3355	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3356	then
3357	export MV2_NUM_PORTS=2
3358	# The default setting of MV2_CPU_MAPPING gives best results
3359	# export MV2_ENABLE_AFFINITY=1
3360	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3361	# if [[ "$sgi_feature" = ice2 ]]
3362	# then
3363	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3364	# else
3365	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3366	# fi
3367	if [[ $use_openmp = true ]]
3368	then
3369	unset MV2_CPU_MAPPING
3370	export MV2_ENABLE_AFFINITY=0
3371	fi
3372	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3373	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3374	if [[ $use_openmp = true ]]
3375	then
3376	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3377	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3378	else
3379	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3380	fi
3381	fi
3382	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3383	then
3384	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3385	else
3386	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3387	fi
3388	else
3389
3390	# currently there is no full MPI-2 support on ICE and XT4
3391	(( iia = $numprocs_atmos / $threads_per_task ))
3392	(( iio = $numprocs_ocean / $threads_per_task ))
3393	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3394	printf "\n using $coupled_mode coupling"
3395	printf "\n\n"
3396
3397	if [[ $coupled_mode = "mpi2" ]]
3398	then
3399	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3400	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3401	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3402	then
3403
3404	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3405	then
3406	# export MPI_LAUNCH_TIMEOUT=360
3407	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3408	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3409	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3410	then
3411	# ulimit -s 300000 # A too large stack size causes problems
3412	# export MV2_NUM_PORTS=2
3413	# export MV2_CPU_MAPPING=0:1:2:3
3414	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3415	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3416	fi
3417
3418	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3419	then
3420
3421	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3422	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3423
3424	else
3425	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3426	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3427	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3428	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3429	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3430	fi
3431	wait
3432
3433	else
3434
3435	echo "coupled_run $iia $iio" > runfile_atmos
3436	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3437	then
3438
3439	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3440	then
3441	# export MPI_LAUNCH_TIMEOUT=360
3442	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3443	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3444	then
3445	# ulimit -s 300000 # A too large stack size causes problems
3446	# export MV2_NUM_PORTS=2
3447	# export MV2_CPU_MAPPING=0:1:2:3
3448	mpiexec ./a.out $ROPTS < runfile_atmos
3449	fi
3450
3451	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3452	then
3453
3454	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3455
3456	elif [[ $host = lck ]]
3457	then
3458	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3459	fi
3460	wait
3461	fi
3462
3463	fi
3464	elif [[ $host = decalpha ]]
3465	then
3466	dmpirun -np $numprocs a.out $ROPTS
3467	elif [[ $host = lckyoto ]]
3468	then
3469	set -xv
3470	export P4_RSHCOMMAND=plesh
3471	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3472	if [[ "$ENVIRONMENT" = BATCH ]]
3473	then
3474	if [[ "$cond2" = fujitsu ]]
3475	then
3476	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3477	elif [[ "cond2" = pgi ]]
3478	then
3479	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3480	else
3481	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3482	fi
3483	else
3484	if [[ "$cond2" = "" ]]
3485	then
3486	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3487	else
3488	mpirun -np $numprocs ./a.out $ROPTS
3489	fi
3490	fi
3491	set +xv
3492	elif [[ $host = lctit ]]
3493	then
3494	export OMP_NUM_THREADS=$threads_per_task
3495	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3496	if [[ "$threads_per_task" != 1 ]]
3497	then
3498	export MV2_ENABLE_AFFINITY=0
3499	fi
3500	echo "----- PBS_NODEFILE content:"
3501	cat $PBS_NODEFILE
3502	echo "-----"
3503	(( ii = $numprocs / $threads_per_task ))
3504	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3505	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3506	else
3507	mpprun -n $numprocs a.out $ROPTS
3508	fi
3509	[[ $? != 0 ]] && execution_error=true
3510
3511
3512	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3513	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3514	then
3515	apprentice
3516	fi
3517	else
3518	a.out $ROPTS
3519	fi
3520	fi
3521	if [[ $? != 0 \|\| $execution_error = true ]]
3522	then
3523
3524	# ABBRUCH BEI LAUFZEITFEHLER
3525	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3526	printf "\n +++ runtime error occured"
3527	locat=execution
3528	exit
3529	else
3530	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3531	printf "\n$striche\n *** execution finished \n"
3532
3533	# Stop the dvr streaming server and process the dvr output in order
3534	# to create dvrs- and html-files containing all streams
3535	if [[ "$dvrserver_id" != "" ]]
3536	then
3537	kill $dvrserver_id
3538	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3539
3540	# If there is a directory, data have been output by the
3541	# streaming server. Otherwise, user has chosen dvrp_output=local
3542	if [[ -d DATA_DVR ]]
3543	then
3544
3545	# Add the current dvr configuration file to the dvr output
3546	# directory
3547	cp .dvrserver.config DATA_DVR
3548
3549	# Process the dvr output (option -s for also generating
3550	# sequence mode data)
3551	process_dvr_output -d DATA_DVR -f $fname -s
3552
3553	else
3554
3555	# Process the local output
3556	process_dvr_output -l -d DATA_DVR -f $fname
3557
3558	fi
3559
3560	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3561	then
3562
3563	# Process dvr output generated in local mode (dvrp_output=local)
3564	process_dvr_output -l -d DATA_DVR -f $fname
3565
3566	fi
3567	fi
3568
3569
3570
3571	# Call of combine_plot_fields in order to merge single files written
3572	# by each PE into one file.
3573	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3574	then
3575	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3576	printf "\n 2d- and/or 3d-data may be incomplete!"
3577	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3578	else
3579	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3580	combine_plot_fields${block}.x
3581	fi
3582
3583
3584
3585	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3586	(( i = 0 ))
3587	while (( i < ioc ))
3588	do
3589	(( i = i + 1 ))
3590	if (( i == 1 ))
3591	then
3592	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3593	fi
3594	printf "\n >>> ${out_command[$i]}"
3595	eval ${out_command[$i]}
3596	if (( i == ioc ))
3597	then
3598	printf "\n$striche\n"
3599	fi
3600	done
3601
3602
3603	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3604	if [[ $do_trace = true ]]
3605	then
3606	printf "\n\n"
3607	ls -al
3608	fi
3609
3610
3611
3612	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3613	(( i = 0 ))
3614	while (( i < iout ))
3615	do
3616	(( i = i + 1 ))
3617	if (( i == 1 ))
3618	then
3619	printf "\n\n *** saving OUTPUT-files:\n$striche"
3620	fi
3621
3622	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3623	files_for_pes=false; filetyp=file
3624	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3625	then
3626	files_for_pes=true; filetyp=directory
3627	actionout[$i]=""
3628	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3629	then
3630	actionout[$i]=""
3631	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3632	then
3633	files_for_pes=true; filetyp=directory
3634	actionout[$i]="ar"
3635	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3636	then
3637	actionout[$i]="ar"
3638	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3639	then
3640	files_for_pes=true; filetyp=directory
3641	actionout[$i]="fl"
3642	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3643	then
3644	actionout[$i]="fl"
3645	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3646	then
3647	files_for_pes=true; filetyp=directory
3648	actionout[$i]="tr"
3649	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3650	then
3651	actionout[$i]="tr"
3652	fi
3653
3654	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3655	then
3656	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3657	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3658	then
3659	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3660	else
3661
3662
3663	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3664	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3665	# REMOTE-RECHNUNGEN
3666	if [[ "${actionout[$i]}" = tr ]]
3667	then
3668	if [[ $localhost != $fromhost ]]
3669	then
3670	if [[ $files_for_pes = false ]]
3671	then
3672	cps=""
3673	cst=""
3674	else
3675	cps=-c
3676	cst="/"
3677	fi
3678	if [[ $localhost = nech ]]
3679	then
3680
3681	# TRANSFER IN EIGENSTAENDIGEM JOB
3682	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3683	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3684	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3685	if [[ $files_for_pes = false ]]
3686	then
3687	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3688	else
3689	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3690	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3691	fi
3692
3693	echo "set -x" > transfer_${localout[$i]}
3694	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3695
3696	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3697	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3698	printf "\n or higher cycle\n"
3699	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3700
3701	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3702
3703	if [[ $localhost = nech ]]
3704	then
3705	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3706	else
3707	if [[ "$LOGNAME" = b323013 ]]
3708	then
3709	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3710	else
3711	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3712	fi
3713	fi
3714
3715	else
3716
3717	# TRANSFER INNERHALB DIESES JOBS
3718	transfer_failed=false
3719	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3720	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3721	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3722	[[ $? != 0 ]] && transfer_failed=true
3723
3724	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3725	# LOKALER MASCHINE ANLEGEN
3726	if [[ $transfer_failed = true ]]
3727	then
3728	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3729	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3730
3731	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3732	# ANLEGEN.
3733	eval local_catalog=${pathout[$i]}
3734	if [[ ! -d $local_catalog ]]
3735	then
3736	printf " *** local directory does not exist. Trying to create:\n"
3737	printf " $local_catalog \n"
3738	mkdir -p $local_catalog
3739	fi
3740	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3741	transfer_problems=true
3742	fi
3743	fi
3744	else
3745
3746	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3747	actionout[$i]=""
3748	fi
3749	fi
3750
3751
3752	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3753	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3754	# REMOTE-RECHNUNGEN
3755	if [[ "${actionout[$i]}" = tra ]]
3756	then
3757	if [[ $localhost != $fromhost ]]
3758	then
3759	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3760	then
3761
3762	# TRANSFER IN EIGENSTAENDIGEM JOB
3763	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3764	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3765	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3766	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3767
3768	echo "set -x" > transfer_${localout[$i]}
3769	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3770
3771	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3772	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3773	printf "\n or higher cycle\n"
3774	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3775
3776	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3777
3778	if [[ $localhost = nech ]]
3779	then
3780	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3781	else
3782	if [[ $LOGNAME = b323013 ]]
3783	then
3784	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3785	else
3786	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3787	fi
3788	fi
3789
3790	else
3791
3792	# TRANSFER INNERHALB DIESES JOBS
3793	transfer_failed=false
3794	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3795	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3796	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3797	[[ $? != 0 ]] && transfer_failed=true
3798
3799	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3800	# LOKALER MASCHINE ANLEGEN
3801	if [[ $transfer_failed = true ]]
3802	then
3803	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3804	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3805
3806	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3807	# ANLEGEN
3808	eval local_catalog=${pathout[$i]}
3809	if [[ ! -d $local_catalog ]]
3810	then
3811	printf " *** local directory does not exist. Trying to create:\n"
3812	printf " $local_catalog \n"
3813	mkdir -p $local_catalog
3814	fi
3815
3816	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3817	transfer_problems=true
3818	fi
3819	fi
3820	else
3821
3822	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3823	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3824	actionout[$i]=a
3825	fi
3826	fi
3827
3828
3829	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3830	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3831	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3832	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3833	if [[ "${actionout[$i]}" = fl ]]
3834	then
3835	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3836	chmod g+rx $tmp_data_catalog
3837	if [[ $files_for_pes = false ]]
3838	then
3839	printf "\n >>> OUTPUT: ${localout[$i]} to"
3840	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3841	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3842	else
3843	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3844	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3845	mkdir $tmp_data_catalog/${frelout[$i]}
3846	cd ${localout[$i]}
3847	for file in $(ls *)
3848	do
3849	ln -f $file $tmp_data_catalog/${frelout[$i]}
3850	done
3851	cd $TEMPDIR
3852	fi
3853
3854
3855	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3856	if [[ $store_on_archive_system = true ]]
3857	then
3858
3859	if [[ $archive_system = asterix ]]
3860	then
3861	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3862	if [[ $files_for_pes = false ]]
3863	then
3864	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3865	else
3866	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3867	fi
3868	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3869	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3870	echo "then" >> archive_${frelout[$i]}
3871	echo " do_stageout=false" >> archive_${frelout[$i]}
3872	echo "else" >> archive_${frelout[$i]}
3873	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3874	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3875	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3876	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3877	if [[ $files_for_pes = false ]]
3878	then
3879	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3880	else
3881	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3882	fi
3883	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3884	echo "fi" >> archive_${frelout[$i]}
3885	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3886	elif [[ $archive_system = DMF ]]
3887	then
3888	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3889	if [[ $files_for_pes = false ]]
3890	then
3891	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3892	locat=DMF
3893	exit
3894	else
3895	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3896	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3897	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3898	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3899	fi
3900	elif [[ $archive_system = tivoli ]]
3901	then
3902	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3903	if [[ $files_for_pes = false ]]
3904	then
3905	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3906	echo "set -x" >> archive_${frelout[$i]}
3907	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3908	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3909	else
3910
3911	echo "set -x" >> archive_${frelout[$i]}
3912	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3913	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3914	cd $tmp_data_catalog
3915	all_files=`ls -1 ${frelout[$i]}/*`
3916	cd - > /dev/null
3917	(( inode = 0 ))
3918	(( tp1 = tasks_per_node + 1 ))
3919	while (( inode < nodes ))
3920	do
3921	# echo "*** all_files = \"$all_files\" "
3922	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3923	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3924	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3925	# echo "*** files = \"$files\" "
3926	# echo "*** all_files = \"$all_files\" "
3927	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3928	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3929	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3930	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3931	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3932	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3933	(( inode = inode + 1 ))
3934	done
3935	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3936	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3937	fi
3938	elif [[ $archive_system = ut ]]
3939	then
3940	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3941	if [[ $files_for_pes = false ]]
3942	then
3943	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3944	echo "set -x" >> archive_${frelout[$i]}
3945	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3946	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3947	else
3948
3949	echo "set -x" >> archive_${frelout[$i]}
3950	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3951	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3952	cd $tmp_data_catalog
3953	all_files=`ls -1 ${frelout[$i]}/*`
3954	cd - > /dev/null
3955	(( inode = 0 ))
3956	(( tp1 = tasks_per_node + 1 ))
3957	while (( inode < nodes ))
3958	do
3959	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3960	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3961	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3962	(( inode = inode + 1 ))
3963	done
3964	fi
3965	elif [[ $archive_system = none ]]
3966	then
3967	printf " +++ archiving on $localhost not available!\n"
3968	fi
3969
3970	if [[ $archive_system != none ]]
3971	then
3972	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3973	then
3974	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3975	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3976	elif [[ $localhost = nech ]]
3977	then
3978	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3979	fi
3980	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3981	fi
3982	else
3983	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3984	fi
3985
3986
3987	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3988	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3989	if [[ $files_for_pes = false ]]
3990	then
3991	cat /dev/null > ${pathout[$i]}
3992	else
3993	mkdir -p ${pathout[$i]}
3994	fi
3995
3996	fi
3997
3998
3999	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4000	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4001	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4002	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4003	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4004	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4005	if [[ "${actionout[$i]}" = ar ]]
4006	then
4007	if [[ $files_for_pes = false ]]
4008	then
4009	printf "\n >>> OUTPUT: ${localout[$i]} to"
4010	printf "\n ${pathout[$i]}"
4011	printf "\n File will be copied to archive-system ($archive_system) !\n"
4012	else
4013	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4014	printf "\n ${pathout[$i]}"
4015	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4016	fi
4017	mv ${localout[$i]} ${frelout[$i]}
4018
4019	file_saved=false
4020
4021	if [[ $archive_system = asterix ]]
4022	then
4023	do_stageout=true
4024	(( stageout_anz = 0 ))
4025	while [[ $do_stageout = true ]]
4026	do
4027	if [[ $files_for_pes = false ]]
4028	then
4029	stageout ${frelout[$i]} > STAGE_OUTPUT
4030	else
4031	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4032	fi
4033	cat STAGE_OUTPUT
4034	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4035	then
4036	file_saved=true
4037	do_stageout=false
4038	else
4039	if [[ $files_for_pes = false ]]
4040	then
4041	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4042	else
4043	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4044	fi
4045	(( stageout_anz = stageout_anz + 1 ))
4046	if (( stageout_anz == 10 ))
4047	then
4048	printf "\n +++ stoped after 10 unsuccessful tries!"
4049	archive_save=false
4050	do_stageout=false
4051	else
4052	printf "\n *** new try to store on archive after 15 min:"
4053	sleep 900
4054	fi
4055	fi
4056	done
4057	elif [[ $archive_system = DMF ]]
4058	then
4059	if [[ $files_for_pes = false ]]
4060	then
4061	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4062	locat=DMF
4063	exit
4064	else
4065	rm -rf $ARCHIVE/${frelout[$i]}
4066	cp -r ${frelout[$i]} $ARCHIVE
4067	fi
4068	file_saved=true
4069	elif [[ $archive_system = tivoli ]]
4070	then
4071	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4072	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4073	# GELEGT WERDEN
4074	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4075	chmod g+rx $tmp_data_catalog
4076	if [[ $files_for_pes = false ]]
4077	then
4078	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4079	else
4080	mkdir $tmp_data_catalog/${frelout[$i]}
4081	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4082	fi
4083
4084	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4085	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4086	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4087	if [[ $files_for_pes = false ]]
4088	then
4089	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4090	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4091	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4092	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4093	else
4094	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4095	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4096	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4097	fi
4098
4099	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4100	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4101	file_saved=true
4102
4103	elif [[ $archive_system = ut ]]
4104	then
4105	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4106	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4107	# GELEGT WERDEN
4108	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4109	chmod g+rx $tmp_data_catalog
4110	if [[ $files_for_pes = false ]]
4111	then
4112	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4113	else
4114	mkdir $tmp_data_catalog/${frelout[$i]}
4115	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4116	fi
4117
4118	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4119	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4120	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4121	if [[ $files_for_pes = false ]]
4122	then
4123	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4124	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4125	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4126	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4127	else
4128	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4129	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4130	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4131	fi
4132
4133	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4134	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4135	file_saved=true
4136
4137	else
4138	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4139	archive_save=false
4140	fi
4141	if [[ $file_saved = true ]]
4142	then
4143	if [[ $files_for_pes = false ]]
4144	then
4145	cat /dev/null > ${pathout[$i]}
4146	else
4147	mkdir -p ${pathout[$i]}
4148	fi
4149	fi
4150	fi
4151
4152	# APPEND AUF LOKALER MASCHINE
4153	if [[ "${actionout[$i]}" = "a" ]]
4154	then
4155	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4156	cat ${localout[$i]} >> ${pathout[$i]}
4157	fi
4158
4159	# KOPIEREN AUF LOKALER MASCHINE
4160	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4161	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4162	then
4163
4164	# KOPIEREN AUF EINPROZESSORMASCHINE
4165	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4166	then
4167	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4168	if [[ $link_local_output = true ]]
4169	then
4170	printf " using ln -f\n"
4171	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4172	fi
4173	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4174	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4175	then
4176	if [[ $link_local_output = true ]]
4177	then
4178	printf " ln failed, using cp...\n"
4179	fi
4180	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4181	fi
4182	else
4183	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4184	if [[ $link_local_output = true ]]
4185	then
4186	printf " using ln -f\n"
4187	ln -f ${localout[$i]} ${pathout[$i]}
4188	fi
4189	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4190	if [[ ! -f "${pathout[$i]}" ]]
4191	then
4192	if [[ $link_local_output = true ]]
4193	then
4194	printf " ln failed, using cp...\n"
4195	fi
4196	cp ${localout[$i]} ${pathout[$i]}
4197	fi
4198	fi
4199
4200	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4201	then
4202
4203	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4204	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4205	# WIRD DANN KOPIERT
4206	# PER MOVE UMBENANNT WERDEN
4207	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4208	if [[ $link_local_output = true ]]
4209	then
4210	printf " using ln -f\n"
4211	mkdir ${pathout[$i]}
4212	cd ${localout[$i]}
4213	for file in $(ls *)
4214	do
4215	ln -f $file ${pathout[$i]}
4216	done
4217	cd $TEMPDIR
4218	fi
4219	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4220	if [[ ! -f "${pathout[$i]}/_0000" ]]
4221	then
4222	if [[ $link_local_output = true ]]
4223	then
4224	printf " ln failed for .../_0000, using cp...\n"
4225	fi
4226	cp -r ${localout[$i]} ${pathout[$i]}
4227	fi
4228
4229	fi
4230	fi
4231	done
4232	if (( i != 0 ))
4233	then
4234	if [[ $transfer_problems = true ]]
4235	then
4236	printf "\n$striche\n *** OUTPUT-files saved"
4237	printf "\n +++ WARNING: some data transfers failed! \n"
4238	else
4239	printf "\n$striche\n *** all OUTPUT-files saved \n"
4240	fi
4241	fi
4242
4243
4244	# EVENTUELL FOLGEJOB STARTEN
4245	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4246	if [[ -f CONTINUE_RUN ]]
4247	then
4248
4249	if [[ $archive_save = true ]]
4250	then
4251
4252	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4253	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4254	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4255	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4256	# HANDEN
4257	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4258	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4259	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4260	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4261	then
4262	mc=`echo $mc \| sed 's/#/f/g'`
4263	fi
4264
4265
4266	# JOB STARTEN
4267	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4268	echo " $mc"
4269	printf "\n$striche\n"
4270	if [[ $localhost != $fromhost ]]
4271	then
4272
4273	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4274	then
4275	echo "*** ssh will be used to initiate restart-runs!"
4276	echo " return_addres=\"$return_addres\" "
4277	echo " return_username=\"$return_username\" "
4278	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4279	then
4280	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4281	else
4282	if [[ $localhost = ibmkisti ]]
4283	then
4284	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4285	else
4286	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4287	fi
4288	fi
4289	else
4290	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4291	locat=restart; exit
4292	fi
4293
4294	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4295	# DER AKTUELLE JOB ENDET
4296	if [[ $queue = special1q ]]
4297	then
4298	sleep 120
4299	else
4300	sleep 30
4301	fi
4302
4303	else
4304
4305	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4306	# RUFEN WERDEN, AUSSER AUF lcfimm
4307	cd $LOCAL_PWD
4308	if [[ $localhost = lcfimm ]]
4309	then
4310	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4311	else
4312	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4313	fi
4314	cd - > /dev/null
4315	fi
4316	printf "\n$striche\n *** restart-run initiated \n"
4317
4318
4319	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4320	# GEHOLT WORDEN SIND, LOESCHEN
4321	(( i = 0 ))
4322	while (( i < iin ))
4323	do
4324	(( i = i + 1 ))
4325	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4326	then
4327	rm -r $tmp_data_catalog/${frelin[$i]}
4328	fi
4329	done
4330
4331	else
4332
4333	printf "\n +++ no restart-run possible, since errors occured"
4334	printf "\n during the archive process"
4335	fi
4336
4337	fi
4338
4339
4340
4341	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4342	if [[ "$email_notification" != "none" ]]
4343	then
4344
4345	if [[ $localhost != $fromhost ]]
4346	then
4347	if [[ -f CONTINUE_RUN ]]
4348	then
4349	echo "PALM restart run necessary" > email_text
4350	echo "description header of actual run:" >> email_text
4351	cat CONTINUE_RUN >> email_text
4352	echo "mrun-command to restart:" >> email_text
4353	echo "$mc" >> email_text
4354	else
4355	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4356	fi
4357	mail $email_notification < email_text
4358	printf "\n *** email notification sent to \"$email_notification\" "
4359	fi
4360	fi
4361
4362
4363
4364	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4365	cd $HOME
4366	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4367
4368	else
4369
4370
4371	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4372	# CHENDE AKTIONEN DURCHGEFUEHRT
4373
4374	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4375	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4376	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4377	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4378	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4379	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4380	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4381	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4382	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4383	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4384	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4385	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4386	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4387	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4388	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4389	if [[ $use_openmp = true ]]
4390	then
4391	mrun_com=${mrun_com}" -O $threads_per_task"
4392	fi
4393	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4394	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4395	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4396	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4397	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4398	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4399	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4400	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4401	if [[ $do_remote = true ]]
4402	then
4403	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4404	fi
4405
4406
4407	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4408	jobfile=jobfile.$RANDOM
4409
4410
4411	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4412	echo "mkdir $TEMPDIR" >> $jobfile
4413	echo "cd $TEMPDIR" >> $jobfile
4414
4415
4416	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4417	if [[ $do_trace = true ]]
4418	then
4419	echo "set -x" >> $jobfile
4420	else
4421	echo "set +vx" >> $jobfile
4422	fi
4423
4424
4425	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4426	# DATEI FUER DEN JOB
4427	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4428	then
4429
4430	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4431	# KOPIEREN
4432	if [[ $restart_run != true ]]
4433	then
4434	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4435	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4436	fi
4437
4438	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4439	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4440	echo "set -x" >> $jobfile
4441	if [[ $host = $localhost ]]
4442	then
4443	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4444	else
4445	if [[ $host != ibmkisti ]]
4446	then
4447	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4448	else
4449	# on KISTI's IBM firewall is only opened on interactive node
4450	echo "localdir=\`pwd\`" >> $jobfile
4451	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4452	fi
4453	fi
4454	echo "export SOURCES_COMPLETE=true" >> $jobfile
4455
4456	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4457	# ARBEITSVERZEICHNIS VERSCHIEBEN
4458	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4459	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4460	echo "execute_mrun=true" >> $jobfile
4461	echo " " >> $jobfile
4462
4463	else
4464
4465	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4466	# SOWIE GEGEBENENFALLS DES MAKEFILES
4467	if [[ $do_compile = true ]]
4468	then
4469
4470	source_catalog=SOURCES_FOR_RUN_$fname
4471
4472	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4473	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4474	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4475	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4476	echo "export SOURCES_COMPLETE=true" >> $jobfile
4477	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4478
4479	for filename in $source_list
4480	do
4481	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4482	echo "cat > $filename << \"%END%\"" >> $jobfile
4483	cat $source_catalog/$filename >> $jobfile
4484	echo " " >> $jobfile
4485	echo "%END%" >> $jobfile
4486	echo " " >> $jobfile
4487	done
4488
4489	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4490	echo "cat > Makefile << \"%END%\"" >> $jobfile
4491	cat $source_catalog/Makefile >> $jobfile
4492	echo " " >> $jobfile
4493	echo "%END%" >> $jobfile
4494	echo " " >> $jobfile
4495
4496	echo "cd - > /dev/null" >> $jobfile
4497
4498	fi
4499
4500
4501	# ABSPEICHERN DER KONFIGURATIONSDATEI
4502	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4503	echo "cat > $config_file << \"%END%\"" >> $jobfile
4504	cat $config_file >> $jobfile
4505	echo "%END%" >> $jobfile
4506	echo " " >> $jobfile
4507
4508
4509	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4510	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4511	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4512	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4513	echo "%END%" >> $jobfile
4514	echo "chmod u+x $mrun_script_name" >> $jobfile
4515	echo "execute_mrun=true" >> $jobfile
4516	echo " " >> $jobfile
4517
4518	fi
4519
4520
4521	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4522	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4523	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4524	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4525	if [[ $do_remote = true ]]
4526	then
4527	(( i = 0 ))
4528	while (( i < iin ))
4529	do
4530	(( i = i + 1 ))
4531	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4532	if [[ "${transin[$i]}" = job ]]
4533	then
4534	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4535	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4536	echo " " >> $jobfile
4537	echo "%END%" >> $jobfile
4538	else
4539	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4540	fi
4541
4542	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4543	echo "if [[ \$? = 1 ]]" >> $jobfile
4544	echo "then" >> $jobfile
4545	echo " echo \" \" " >> $jobfile
4546	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4547	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4548	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4549	echo " execute_mrun=false" >> $jobfile
4550	echo "fi" >> $jobfile
4551	done
4552	fi
4553
4554	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4555	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4556	echo "LOCAL_PWD=$working_directory" >> $jobfile
4557	echo "export LOCAL_PWD" >> $jobfile
4558
4559	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4560	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4561	echo "export LOCAL_MRUN_PATH" >> $jobfile
4562
4563	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4564	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4565	then
4566	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4567	fi
4568
4569	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4570	echo "set -x" >> $jobfile
4571	echo "queue=$queue" >> $jobfile
4572	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4573
4574	echo 'ls -al; echo `pwd`' >> $jobfile
4575	echo "cd \$HOME" >> $jobfile
4576	echo "rm -rf $TEMPDIR" >> $jobfile
4577
4578
4579
4580
4581	# JOB PER SUBJOB STARTEN
4582	if [[ $silent = false ]]
4583	then
4584	printf "\n "
4585	else
4586	printf "\n\n"
4587	fi
4588
4589	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4590	rm -rf $jobfile
4591
4592
4593	fi # ENDE REMOTE-TEIL
4594
4595
4596
4597	# ENDE DER PROZEDUR

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