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source: palm/trunk/SCRIPTS/mrun @ 1267

Last change on this file since 1267 was 1256, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1256 2013-11-07 14:46:21Z heinze $
29	#
30	# 1255 2013-11-07 14:43:35Z raasch
31	# further adjustments for lccrayb remote access
32	#
33	# 1241 2013-10-30 11:36:58Z heinze
34	# Enable use of nudging input and input of large scale forcing from
35	# external files
36	#
37	# 1229 2013-09-20 06:55:19Z raasch
38	# further adjustments for lccrayb
39	#
40	# 1224 2013-09-16 07:27:23Z raasch
41	# first adjustments for lccrayb
42	#
43	# 1210 2013-08-14 10:58:20Z raasch
44	# fftw support added
45	#
46	# 1201 2013-07-10 16:17:59Z witha
47	# adjustments for Forwind cluster (lcflow)
48	#
49	# 1199 2013-07-05 14:52:22Z raasch
50	# adjustments for CSC Helsinki (lccrayf),
51	# executables for batch jobs can be created in advance, in order to avoid calling
52	# the compiler within the batch job (only works if batch jobs are submitted on
53	# local host)
54	#
55	# 1190 2013-06-25 09:39:21Z heinze
56	# enable use of automatic restarts for ibmh
57	# use of cluster/express queue enabled (ibmh)
58	#
59	# 1124 2013-04-09 15:46:52Z raasch
60	# variable "memory" is exported via typeset option -x, because otherwise an unknown
61	# side effect may lead to data loss while getopts is reading the script-option arguments
62	#
63	# 1122 2013-04-09 08:37:16Z heinze
64	# Bugfix: change type of variable last_char
65	#
66	# 1119 2013-04-05 15:11:19Z raasch
67	# Bugfix for setting -T option for subjob
68	#
69	# 1108 2013-03-05 07:03:32Z raasch
70	# bugfix for coupled runs on lckyut/lckyuh
71	#
72	# 1106 2013-03-04 05:31:38Z raasch
73	# --stdin argument for mpiexec on lckyuh
74	# -y and -Y settings output to header
75	#
76	# 1103 2013-02-20 02:15:53Z raasch
77	# default script runs again under ksh, because of unsolved problems with read
78	# from stdin: when bash script is called from a ksh, message "read error: 0:
79	# Resource temporarily unavailable" appears and script does not stop,
80	# further bash compatibility adjustments,
81	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
82	# on lckyuh, but mrun does not terminate and issues a warning instead
83	#
84	# 1101 2013-02-17 10:20:21Z raasch
85	# script now running under bash instead of ksh, which required small adjustments
86	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
87	# read from stdin),
88	# cross compilername on lckyuh compute nodes replaced by real compiler name
89	#
90	# 1099 2013-02-10 01:47:43Z raasch
91	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
92	# and for Forwind cluster (lcflow)
93	# small further adjustments for lckyut
94	#
95	# 1094 2013-02-03 01:52:12Z raasch
96	# explicit ssh/scp port can be set in config file with environment variable
97	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
98	# decalpha parts (yonsei) removed
99	#
100	# 2013-02-02 07:06:13Z raasch
101	# adjustments for Kyushu-University computing center (lckyut - tatara)
102	#
103	# 1083 2013-01-04 10:22:09Z maronga
104	# bugfix in parameter file check (read %cpp_options was missing)
105	#
106	# 1069 2012-11-28 16:18:43Z maronga
107	# bugfix: coupling mode was always set to mpi2, typos removed
108	#
109	# 1058 2012-11-21 07:00:35Z raasch
110	# Intel inspector (inspxe) is given the number of PEs instead of the number of
111	# nodes
112	#
113	# 1046 2012-11-09 14:38:45Z maronga
114	# code put under GPL (PALM 3.9)
115	#
116	# 21/03/94 - Siggi - first version finished
117	# 03/03/94 - Siggi - script development started
118	#
119	#--------------------------------------------------------------------------------#
120	# mrun - script for running PALM jobs
121	#--------------------------------------------------------------------------------#
122
123
124
125	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
126
127	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
128	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
129	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
130
131	AddFilenames=""
132	additional_conditions=""
133	add_source_path=""
134	afname=""
135	archive_save=true
136	archive_system=none
137	check_namelist_files=true
138	combine_plot_fields=true
139	compiler_name=""
140	cond1=""
141	cond2=""
142	config_file=.mrun.config
143	coupled_dist=""
144	coupled_mode="mpi1"
145	cpp_opts=""
146	cpp_options=""
147	cpumax=0
148	cpurest=0
149	create_executable_for_batch=false
150	delete_temporary_catalog=true
151	do_batch=false
152	do_compile=true
153	do_remote=false
154	do_stagein=true
155	do_stageout=true
156	do_trace=false
157	email_notification="none"
158	exclude=""
159	executable=""
160	execution_error=false
161	fftw_inc=""
162	fftw_lib=""
163	fftw_support=false
164	fimm=false
165	fname=test
166	fromhost=""
167	global_revision=""
168	group_number=none
169	host=""
170	host_file=""
171	hp=""
172	ignore_archive_error=false
173	input_list=""
174	interpreted_config_file=""
175	job_catalog="~/job_queue"
176	job_on_file=""
177	keep_data_from_previous_run=false
178	link_local_input=false
179	link_local_output=false
180	localhost_realname=$(hostname)
181	local_compile=false
182	local_dvrserver_running=.FALSE.
183	locat=normal
184	mainprog=""
185	makefile=""
186	max_par_io_str=""
187	mc=$0
188	while [[ $(echo $mc \| grep -c "/") != 0 ]]
189	do
190	mc=`echo $mc \| cut -f2- -d"/"`
191	done
192	module_calls=""
193	mrun_script_name=$mc
194	netcdf_inc=""
195	netcdf_lib=""
196	netcdf_support=false
197	node_usage=default
198	numprocs=""
199	numprocs_atmos=0
200	numprocs_ocean=0
201	OOPT=""
202	openmp=false
203	output_list=""
204	package_list=""
205	punkte="..........................................................."
206	queue=none
207	read_from_config=""
208	restart_run=false
209	if [[ `hostname` = rte10 ]]
210	then
211	return_addres=133.5.185.60
212	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
213	elif [[ `hostname` = climate0 ]]
214	then
215	return_addres=165.132.26.68
216	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
217	elif [[ `hostname` = urban00 ]]
218	then
219	return_addres=147.46.30.151
220	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
221	else
222	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
223	fi
224	return_password=""
225	return_username=$LOGNAME
226	remotecall=false
227	remote_username=""
228	run_coupled_model=false
229	run_mode=""
230	scirocco=false
231	store_on_archive_system=false
232	striche=" ----------------------------------------------------------------------------"
233	silent=false
234	source_list=""
235	source_path=SOURCE
236	tasks_per_node=""
237	threads_per_task=1
238	tmpcreate=false
239	tmp_data_catalog=""
240	transfer_problems=false
241	usern=$LOGNAME
242	use_openmp=false
243	version="MRUN 2.0 Rev$Rev: 1256 $"
244	working_directory=`pwd`
245	TOPT=""
246	XOPT=""
247	zeit=$( date \| cut -c 12-19 )
248
249	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
250	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
251	# effect may cause data loss when getopts is reading the
252	# script-option arguments
253	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
254
255
256
257
258	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
259	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
260
261	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
262	# EXPORTIERT WERDEN
263	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
264	export group_number input_list numprocs output_list queue run_mode
265
266
267
268	# FEHLERBEHANDLUNG
269	# BEI EXIT:
270	trap 'rm -rf $working_directory/tmp_mrun
271	if [[ $locat != localhost ]]
272	then
273	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
274	# then
275	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
276	#MRUN-calls on $localhost
277	#
278	#date and time user localhost remotehost termination mrun-command
279	#--------------------------------------------------------------------------------------------------------------------
280	#%STATEND%
281	# chmod 666 ${mrun_path}/statistik/mrun_statistik
282	# fi
283	#
284	# # EINTRAG IN DIE STATISTIK-DATEI
285	# string1=`date` #-L35
286	# string2=$usern #-L12
287	# string3=$localhost_realname #-L12
288	# string4=$host #-L12
289	# string5=$locat #-L12
290	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
291	# then
292	# if [[ $do_batch = true ]]
293	# then
294	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
295	# else
296	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
297	# fi
298	# fi
299	echo " " > /dev/null
300	fi
301
302	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
303	then
304
305	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
306	(( i = 0 ))
307	while (( i < iec ))
308	do
309	(( i = i + 1 ))
310	printf "\n *** Execution of ERROR-command:\n"
311	printf " >>> ${err_command[$i]}\n"
312	eval ${err_command[$i]}
313	done
314	if [[ -n $interpreted_config_file ]]
315	then
316	rm -rf $interpreted_config_file
317	fi
318	if [[ -n .mrun_environment ]]
319	then
320	rm -rf .mrun_environment
321	fi
322	if [[ $tmpcreate = true ]]
323	then
324	printf "\n *** Contents of \"$TEMPDIR\":\n"
325	ls -al; cd
326	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
327	fi
328	if [[ "$dvrserver_id" != "" ]]
329	then
330	echo "+++ killing dvrserver_id=$dvrserver_id"
331	kill $dvrserver_id
332	fi
333	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
334	then
335	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
336	fi
337	printf "\n\n+++ MRUN killed \n\n"
338	elif [[ $locat != control_c ]]
339	then
340	printf "\n\n --> all actions finished\n\n"
341	printf " Bye, bye $usern !!\n\n"
342	fi' exit
343
344
345	# BEI TERMINAL-BREAK:
346	trap 'rm -rf $working_directory/tmp_mrun
347	rm -rf $working_directory/tmp_check_namelist_files
348	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
349	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
350	then
351	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
352	fi
353	if [[ "$dvrserver_id" != "" ]]
354	then
355	echo "+++ killing dvrserver_id=$dvrserver_id"
356	kill $dvrserver_id
357	fi
358	printf "\n+++ MRUN killed by \"^C\" \n\n"
359	locat=control_c
360	exit
361	' 2
362
363
364	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
365	# BEEN SET
366	if [[ "$PALM_BIN" = "" ]]
367	then
368	printf "\n +++ environment variable PALM_BIN has not been set"
369	printf "\n please set it to the directory where the PALM scripts are located"
370	locat=palm_bin; exit
371	fi
372	export PATH=$PALM_BIN:$PATH
373
374
375
376	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
377	# FUER FOLGEJOBS BENOETIGT WIRD
378	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
379	do
380	case $option in
381	(a) afname=$OPTARG;;
382	(A) store_on_archive_system=true; mc="$mc -A";;
383	(b) do_batch=true; mc="$mc -b";;
384	(B) delete_temporary_catalog=false; mc="$mc -B";;
385	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
386	(C) restart_run=true; mc="$mc -C";;
387	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
388	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
389	(F) job_on_file="-D"; mc="$mc -F";;
390	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
391	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
392	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
393	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
394	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
395	(I) ignore_archive_error=true; mc="$mc -I";;
396	(k) keep_data_from_previous_run=true; mc="$mc -k";;
397	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
398	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
399	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
400	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
401	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
402	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
403	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
404	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
405	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
406	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
407	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
408	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
409	(S) read_from_config=false; mc="$mc -S";;
410	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
411	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
412	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
413	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
414	(v) silent=true; mc="$mc -v";;
415	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
416	(x) do_trace=true;set -x; mc="$mc -x";;
417	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
418	(y) ocean_file_appendix=true; mc="$mc -y";;
419	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
420	(z) check_namelist_files=false; mc="$mc -z";;
421	(Z) combine_plot_fields=false; mc="$mc -Z";;
422	(\?) printf "\n +++ unknown option $OPTARG \n"
423	printf "\n --> type \"$0 ?\" for available options \n"
424	locat=parameter;exit;;
425	esac
426	done
427
428
429	# EVTL. POSITIONSPARAMETER EINLESEN
430	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
431	(( to_shift = $OPTIND - 1 ))
432	shift $to_shift
433
434	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
435	if [[ "$1" = "?" ]]
436	then
437	(printf "\n *** mrun can be called as follows:\n"
438	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
439	printf "\n Description of available options:\n"
440	printf "\n Option Description Default-Value"
441	printf "\n -a base name of input files equiv. -d"
442	printf "\n -A archiving when using file-attribute fl"
443	printf "\n -b batch-job on local machine ---"
444	printf "\n -B do not delete temporary directory at end ---"
445	printf "\n -c configuration file .mrun.config"
446	printf "\n -d base name of files attached to program test"
447	printf "\n -D preprocessor(cpp)-directives \"\" "
448	printf "\n -F create remote job file only ---"
449	printf "\n -h execution host $localhost_realname"
450	printf "\n -i INPUT control list \"\" "
451	printf "\n -I archiving errors of previous batch-jobs"
452	printf "\n will be ignored"
453	printf "\n -k keep data from previous run"
454	printf "\n -K additional conditions for controling"
455	printf "\n usage of conditional code and"
456	printf "\n env-variables in configuration file \"\" "
457	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
458	printf "\n -M Makefile name Makefile"
459	printf "\n -n node usage (shared/not_shared) depending on -h"
460	printf "\n -o OUTPUT control list \"\" "
461	printf "\n -O use OpenMP ---"
462	printf "\n -p software package list \"\" "
463	printf "\n -q queue \"$queue\" "
464	printf "\n -r run control list (combines -i -o) \"\" "
465	printf "\n -s filenames of routines to be compiled \"\" "
466	printf "\n must end with .f, .f90, .F, or .c !"
467	printf "\n use \"..\" for more than one file and wildcards"
468	printf "\n -s LM compiles all locally modified files"
469	printf "\n -S config file interpreted by shellscript ---"
470	printf "\n -t allowed cpu-time in seconds (batch) 0"
471	printf "\n -T tasks per node depending on -h"
472	printf "\n -u username on remote machine \"\" "
473	printf "\n -v no prompt for confirmation ---"
474	printf "\n -w maximum parallel io streams as given by -X"
475	printf "\n -x tracing of mrun for debug purposes ---"
476	printf "\n -X # of processors (on parallel machines) 1"
477	printf "\n -y add appendix \"_O\" to all local output"
478	printf "\n files (ocean precursor runs followed by"
479	printf "\n coupled atmosphere-ocean runs) ---"
480	printf "\n -Y run coupled model, \"#1 #2\" with"
481	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
482	printf "\n -z disable a priori parameter file check ---"
483	printf "\n -Z skip combine_plot_fields at the end of "
484	printf "\n the simulation ---"
485	printf "\n "
486	printf "\n Possible values of positional parameter <modus>:"
487	printf "\n \"?\" - this outline \n\n") \| more
488	exit
489	elif [[ "$1" != "" ]]
490	then
491	printf "\n +++ positional parameter $1 unknown \n"
492	locat=parameter; exit
493	fi
494
495
496
497	# KURZE STARTMELDUNG
498	printf "\n*** $version "
499	printf "\n will be executed. Please wait ..."
500
501
502
503	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
504	if [[ ! -f $config_file ]]
505	then
506	printf "\n\n +++ configuration file: "
507	printf "\n $config_file"
508	printf "\n does not exist"
509	locat=connect; exit
510	fi
511
512
513	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
514	line=""
515	grep "%host_identifier" $config_file > tmp_mrun
516	while read line
517	do
518	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
519	then
520	HOSTNAME=`echo $line \| cut -d" " -s -f2`
521	host_identifier=`echo $line \| cut -d" " -s -f3`
522	if [[ $localhost_realname = $HOSTNAME ]]
523	then
524	localhost=$host_identifier
525	break
526	fi
527	fi
528	done < tmp_mrun
529
530	if [[ "$localhost" = "" ]]
531	then
532	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
533	printf "\n for local host \"$localhost_realname\"."
534	printf "\n Please add line"
535	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
536	printf "\n to the configuration file."
537	locat=localhost; exit
538	fi
539
540
541	# HOSTSPEZIFISCHE VARIABLEN SETZEN
542	case $localhost_realname in
543	(r1\|r2\|h01\|b01) archive_system=tivoli;;
544	(cs*) archive_system=ut;;
545	(fimm.bccs.uib.no) fimm=true;;
546	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
547	(scirocco) scirocco=true;;
548	esac
549
550
551
552	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
553	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
554	[[ "$afname" = "" ]] && afname=$fname
555
556
557	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
558	if [[ "$run_mode" != "" ]]
559	then
560	input_list="$input_list $run_mode"
561	output_list="$output_list $run_mode"
562	fi
563
564
565	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
566	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
567	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
568	# STARTET)
569	if [[ "$fromhost" = "" ]]
570	then
571	fromhost=$localhost
572	fi
573
574
575	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
576	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
577	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
578	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
579	if [[ -n $host && "$host" != $localhost ]]
580	then
581	do_batch=true
582	do_remote=true
583	case $host in
584	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
585	(*) printf "\n"
586	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
587	printf "\n is not available"
588	locat=nqs; (( iec = 0 )); exit;;
589	esac
590	else
591	host=$localhost
592	fi
593
594
595	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
596	if [[ -n $additional_conditions ]]
597	then
598	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
599	cond1=`echo $additional_conditions \| cut -d" " -f1`
600	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
601	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
602	if [[ -n $dummy ]]
603	then
604	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
605	locat=options; exit
606	fi
607	block=_$cond1
608	[[ -n $cond2 ]] && block=${block}_$cond2
609	fi
610
611
612	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
613	if [[ $run_coupled_model = true ]]
614	then
615
616	if [[ -n $coupled_dist ]]
617	then
618
619	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
620	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
621
622	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
623	then
624
625	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
626	printf "\n PEs (total) : $numprocs"
627	printf "\n PEs (atmosphere): $numprocs_atmos"
628	printf "\n PEs (ocean) : $numprocs_ocean"
629	locat=coupling; exit
630
631	fi
632
633	else
634
635	(( numprocs_ocean = $numprocs / 2 ))
636	(( numprocs_atmos = $numprocs / 2 ))
637
638	fi
639	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
640
641	# GET coupled_mode FROM THE CONFIG FILE
642	line=""
643	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
644	while read line
645	do
646	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
647	then
648	coupled_mode="mpi2"
649	fi
650	done < tmp_mrun
651
652	fi
653
654
655	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
656	# ARCHIVIERUNG FEHLGESCHLAGEN IST
657	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
658	then
659	if [[ $ignore_archive_error = false ]]
660	then
661	printf "\n +++ data archiving of previous run failed"
662	printf "\n see directory \~/job_queue on remote machine"
663	locat=archive; exit
664	else
665	printf "\n +++ warning: data archiving in a previous run failed"
666	printf "\n MRUN continues, trying to get backup copy"
667	fi
668	fi
669
670
671	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
672	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
673	mrun_memory=$memory
674	mrun_group_number=$group_number
675	mrun_cpumax=$cpumax
676	mrun_numprocs=$numprocs
677
678
679	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
680	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
681	if [[ "$read_from_config" = false ]]
682	then
683
684	[[ $silent = false ]] && printf "\n Reading the configuration file... "
685	while read zeile
686	do
687	[[ $silent = false ]] && printf "."
688
689
690	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
691	# ERSETZEN
692	eval zeile=\"$zeile\"
693
694
695	# INTERPRETATION DER ZEILE
696	if [[ "$(echo $zeile)" = "" ]]
697	then
698	# LEERZEILE, KEINE AKTION
699	continue
700
701	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
702	then
703
704	# ZEILE IST KOMMENTARZEILE
705	true
706
707	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
708	then
709
710	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
711	zeile=$(echo $zeile \| cut -c2-)
712	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
713	var=`echo $zeile \| cut -d" " -f1`
714	value=`echo $zeile \| cut -d" " -s -f2`
715	for_host=`echo $zeile \| cut -d" " -s -f3`
716	for_cond1=`echo $zeile \| cut -d" " -s -f4`
717	for_cond2=`echo $zeile \| cut -d" " -s -f5`
718
719	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
720	then
721
722	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
723	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
724	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
725
726
727	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
728	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
729	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
730	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
731	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
732	# KONFIGURATIONSDATEI
733	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
734	then
735	eval $var=\$value
736
737	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
738	if [[ $do_trace = true ]]
739	then
740	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
741	fi
742	fi
743
744	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
745	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
746	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
747	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
748	if [[ $var = host ]]
749	then
750	if [[ -n $host && "$host" != $localhost ]]
751	then
752	do_batch=true
753	do_remote=true
754	case $host in
755	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
756	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
757	printf "\n is not available"
758	locat=nqs; exit;;
759	esac
760	else
761	host=$localhost
762	fi
763	fi
764
765	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
766	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
767	# DEN PROGRAMMEN BENOETIGT WERDEN
768	export $var
769	fi
770
771
772
773
774	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
775	then
776
777	# ZEILE DEFINIERT ERROR-KOMMANDO
778	(( iec = iec + 1 ))
779	zeile=$(echo $zeile \| cut -c4-)
780	err_command[$iec]="$zeile"
781
782	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
783	then
784
785	# ZEILE DEFINIERT INPUT-KOMMANDO
786	(( iic = iic + 1 ))
787	zeile=$(echo $zeile \| cut -c4-)
788	in_command[$iic]="$zeile"
789
790	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
791	then
792
793	# ZEILE DEFINIERT OUTPUT-KOMMANDO
794	(( ioc = ioc + 1 ))
795	zeile=$(echo $zeile \| cut -c4-)
796	out_command[$ioc]="$zeile"
797
798	else
799
800	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
801	# s2a: in/out - Feld
802	# s2b: loc - Feld (optional)
803	# s2c: tr/ar - Feld (optional)
804	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
805	s1=`echo $zeile \| cut -d" " -f1`
806	s2=`echo $zeile \| cut -d" " -s -f2`
807	s2a=$(echo $s2 \| cut -d":" -f1)
808	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
809	then
810	s2b=""
811	s2c=""
812	else
813	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
814	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
815	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
816	fi
817	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
818	s3=`echo $zeile \| cut -d" " -f3`
819	s4=`echo $zeile \| cut -d" " -s -f4`
820	s5=`echo $zeile \| cut -d" " -s -f5`
821	s6=`echo $zeile \| cut -d" " -s -f6`
822
823
824	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
825	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
826	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
827	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
828	# HANDEN SEIN MUSS (D.H. s2b = loc)
829	IFSALT="$IFS"; IFS="$IFS:"
830	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
831	then
832	found=false
833	for actual in $input_list
834	do
835	for formal in $s3
836	do
837	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
838	done
839	done
840	if [[ $found = true ]]
841	then
842	(( iin = iin + 1 ))
843	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
844	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
845	extin[$iin]=$s6
846	fi
847	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
848	then
849	found=false
850	for actual in $output_list
851	do
852	for formal in $s3
853	do
854	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
855	done
856	done
857	if [[ $found = true ]]
858	then
859	(( iout = iout + 1 ))
860	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
861	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
862	fi
863	elif [[ "$s2a" != in && "$s2a" != out ]]
864	then
865	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
866	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
867	locat=connect; exit
868	fi
869	IFS="$IFSALT"
870	fi
871	done < $config_file
872
873	else
874
875
876	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
877	[[ $silent = false ]] && printf "..."
878	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
879	export interpreted_config_file=.icf.$RANDOM
880
881
882
883	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
884	# VERFUEGUNG STELLEN
885	cat > .mrun_environment << %%END%%
886	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
887	config_file = '$config_file', do_remote = '$do_remote',
888	do_trace = '$do_trace', host = '$host',
889	input_list = '$input_list', icf = '$interpreted_config_file',
890	localhost = '$localhost', output_list = '$output_list' /
891
892	%%END%%
893
894	if [[ $localhost_realname = "sx-fep" ]]
895	then
896	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
897	else
898
899	if [[ "$host" != $localhost ]]
900	then
901
902	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
903	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
904	if [[ $? != 0 ]]
905	then
906	printf "\n\n +++ no interpret_config found"
907	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
908	locat=interpret_config; exit
909	fi
910	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
911	$interpret_config_executable
912
913	else
914
915	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
916	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
917	then
918	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
919	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
920	locat=interpret_config; exit
921	else
922	interpret_config${block}.x
923	fi
924
925	fi
926	fi
927	rm .mrun_environment
928
929
930	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
931	chmod u+x $interpreted_config_file
932	export PATH=$PATH:.
933	. $interpreted_config_file
934	rm $interpreted_config_file
935
936	fi
937
938
939	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
940	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
941	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
942	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
943	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
944	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
945	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
946
947
948	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
949	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
950	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
951	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
952	if [[ "$SOURCES_COMPLETE" = "" ]]
953	then
954
955	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
956	# VEREINBART WURDE
957	source_path=""
958	line=""
959	grep "%source_path" $config_file > tmp_mrun
960	while read line
961	do
962	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
963	then
964	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
965	then
966	global_source_path=`echo $line \| cut -d" " -f2`
967	fi
968	fi
969	done < tmp_mrun
970
971	line=""
972	found=false
973	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
974	while read line
975	do
976	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
977	then
978	if [[ $found = true ]]
979	then
980	printf "\n\n +++ more than one source path found in configuration file"
981	printf "\n for local host \"$localhost\" "
982	locat=source_path; exit
983	fi
984	source_path=`echo $line \| cut -d" " -f2`
985	found=true
986	fi
987	done < tmp_mrun
988	rm tmp_mrun
989
990	if [[ "$source_path" = "" ]]
991	then
992	if [[ "$global_source_path" != "" ]]
993	then
994	source_path=$global_source_path
995	else
996	printf "\n\n +++ no source path found in configuration file"
997	printf "\n for local host \"$localhost\" "
998	locat=source_path; exit
999	fi
1000	fi
1001	eval source_path=$source_path
1002
1003	if [[ ! -d $source_path ]]
1004	then
1005	printf "\n\n +++ source path \"$source_path\" on local host"
1006	printf "\n \"$localhost\" does not exist"
1007	locat=source_path; exit
1008	fi
1009
1010	fi
1011
1012
1013	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1014	# DURCH OPTION -G MITGETEILT)
1015	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1016	then
1017	global_revision=`svnversion $source_path 2>/dev/null`
1018	global_revision="Rev: $global_revision"
1019	fi
1020
1021
1022	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1023	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1024	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1025	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1026	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1027	if [[ -n $host && "$host" != $localhost ]]
1028	then
1029	do_batch=true
1030	do_remote=true
1031	case $host in
1032	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1033	(*) printf "\n"
1034	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1035	printf "\n is not available"
1036	locat=nqs; (( iec = 0 )); exit;;
1037	esac
1038	else
1039	host=$localhost
1040	fi
1041
1042
1043	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1044	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1045	then
1046
1047	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1048	if [[ ! -n $numprocs ]]
1049	then
1050	printf "\n"
1051	printf "\n +++ option \"-K parallel\" requires additional specification"
1052	printf "\n of the number of processors to be used by"
1053	printf "\n mrun-option \"-X\" or by environment-variable"
1054	printf "\n \"numprocs\" in the configuration file"
1055	locat=numprocs; (( iec = 0 )); exit
1056	fi
1057
1058	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1059	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1060	# GESAMTPROZESSORANZAHL IST
1061	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1062	then
1063	printf "\n"
1064	printf "\n +++ option \"-T\" (tasks per node) is missing"
1065	printf "\n set -T option or define tasks_per_node in the config file"
1066	locat=tasks_per_node; (( iec = 0 )); exit
1067	fi
1068	if [[ $host != lcflow && $host != lcxt5m ]]
1069	then
1070	(( ival = $tasks_per_node ))
1071	(( pes = numprocs ))
1072	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1073	# then
1074	# (( pes = pes - 1 ))
1075	# fi
1076	(( ii = pes / ival ))
1077	if (( pes - ii * ival > 0 ))
1078	then
1079	printf "\n"
1080	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1081	printf "\n divisor of the total number of processors (option \"-X\")"
1082	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1083	locat=tasks_per_node; (( iec = 0 )); exit
1084	fi
1085	fi
1086
1087
1088	# IBMY HAT NUR EINEN KNOTEN
1089	if [[ $host = ibmy ]]
1090	then
1091	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1092	then
1093	printf "\n"
1094	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1095	printf "\n total number of processors (option \"-X\")"
1096	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1097	locat=tasks_per_node; (( iec = 0 )); exit
1098	fi
1099	fi
1100
1101
1102	# SETTINGS FOR SUBJOB-COMMAND
1103	OOPT="-O $threads_per_task"
1104
1105	# GESAMTZAHL DER KNOTEN BESTIMMEN
1106	if [[ "$tasks_per_node" != "" ]]
1107	then
1108	TOPT="-T $tasks_per_node"
1109	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1110	fi
1111
1112	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1113	# SETZEN
1114	if [[ $node_usage = default ]]
1115	then
1116	if [[ $host = ibms ]]
1117	then
1118	node_usage=shared
1119	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1120	then
1121	node_usage=singlejob
1122	else
1123	node_usage=not_shared
1124	fi
1125	fi
1126
1127	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1128	then
1129	printf "\n"
1130	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1131	printf "\n \"shared\" or \"not_shared\""
1132	locat=tasks_per_node; (( iec = 0 )); exit
1133	fi
1134
1135	fi
1136
1137	# PRUEFEN, OB HOSTFILE EXISTIERT
1138	if [[ -n $hostfile ]]
1139	then
1140	if [[ ! -f $hostfile ]]
1141	then
1142	printf "\n"
1143	printf "\n +++ hostfile \"$hostfile\" does not exist"
1144	locat=hostfile; exit
1145	fi
1146	fi
1147
1148	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1149	if [[ $host = ibmy && $do_remote = false ]]
1150	then
1151	if [[ ! -f $HOME/.rhosts ]]
1152	then
1153	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1154	printf "\n\n *** file:"
1155	printf "\n $HOME/.rhosts"
1156	printf "\n was created\n"
1157	fi
1158	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1159	then
1160	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1161	printf "\n\n *** file:"
1162	printf "\n $HOME/.rhosts"
1163	printf "\n was extended by the name of the current host\n"
1164	fi
1165	fi
1166
1167
1168	# Set default value for the maximum number of parallel io streams
1169	if [[ "$maximum_parallel_io_streams" = "" ]]
1170	then
1171	maximum_parallel_io_streams=$numprocs
1172	fi
1173
1174
1175	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1176	if [[ "$scp_port" != "" ]]
1177	then
1178	PORTOPT="-P $scp_port"
1179	SSH_PORTOPT="-p $scp_port"
1180	fi
1181
1182
1183	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1184	if [[ $queue = none ]]
1185	then
1186	case $host in
1187	(ibmh) queue=cluster;;
1188	(ibmkisti) queue=class.32plus;;
1189	(ibmy) queue=parallel;;
1190	(lckiaps) queue=normal;;
1191	(lckyoto) queue=ph;;
1192	(lckyuh) queue=fx-single;;
1193	(lckyut) queue=cx-single;;
1194	(lcsgib) queue=testq;;
1195	(lcsgih) queue=testq;;
1196	(lctit) queue=S;;
1197	(nech) queue=none;;
1198	(necriam) queue=SP;;
1199	(unics) queue=unics;;
1200	esac
1201	fi
1202
1203
1204	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1205	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1206	# ERMITTELN
1207	(( i = 0 ))
1208	while (( i < iin ))
1209	do
1210	(( i = i + 1 ))
1211	(( maxcycle = 0 ))
1212
1213	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1214	if [[ "${actionin[$i]}" = di ]]
1215	then
1216	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1217	# REM-MASCHINE AUSWERTEN
1218	eval filename=${pathin[$i]}/${endin[$i]}
1219	else
1220	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1221	# REM-MASCHINE AUSWERTEN
1222	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1223	fi
1224	eval pathname=${pathin[$i]}
1225
1226	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1227	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1228	then
1229	filename_input=$filename
1230	fi
1231
1232	# PRUEFEN AUF VORHANDENSEIN
1233	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1234	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1235	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1236	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1237	then
1238	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1239	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1240	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1241	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1242	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1243	if [[ "${transin[$i]}" != "locopt" ]]
1244	then
1245	printf "\n\n +++ INPUT-file: "
1246	if [[ "${extin[$i]}" = "" ]]
1247	then
1248	printf "\n $filename"
1249	else
1250	printf "\n $filename.${extin[$i]}"
1251	fi
1252	printf "\n does not exist\n"
1253	locat=input; exit
1254	else
1255	transin[$i]="unavailable"
1256	fi
1257	else
1258
1259	# ZYKLUSNUMMER FESTSTELLEN
1260	ls -1 -d $filename > filelist 2>/dev/null
1261	ls -1 -d $filename.* >> filelist 2>/dev/null
1262	while read zeile
1263	do
1264	cycle=$(echo $zeile \| cut -f2 -d".")
1265	if [[ "$cycle" = "$zeile" ]]
1266	then
1267	(( icycle = 0 ))
1268	elif [[ "$cycle" = "${extin[$i]}" ]]
1269	then
1270	(( icycle = 0 ))
1271	else
1272	(( icycle = $cycle ))
1273	fi
1274	if (( icycle > maxcycle ))
1275	then
1276	(( maxcycle = icycle ))
1277	file_to_be_used=$zeile
1278	fi
1279	done <filelist
1280	rm filelist
1281
1282	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1283	if (( maxcycle > 0 ))
1284	then
1285	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1286	then
1287	filename=${filename}.$maxcycle.${extin[$i]}
1288	else
1289	filename=${filename}.$maxcycle
1290	fi
1291	else
1292	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1293	then
1294	filename=${filename}.${extin[$i]}
1295	fi
1296	fi
1297
1298	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1299	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1300	absnamein[$i]=$filename
1301	if (( maxcycle > 0 ))
1302	then
1303	if [[ "${actionin[$i]}" = di ]]
1304	then
1305	frelin[$i]=${endin[$i]}.$maxcycle
1306	else
1307	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1308	fi
1309	else
1310	if [[ "${actionin[$i]}" = di ]]
1311	then
1312	frelin[$i]=${endin[$i]}
1313	else
1314	frelin[$i]=${afname}${endin[$i]}
1315	fi
1316	fi
1317
1318	fi
1319	done
1320
1321	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1322	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1323	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1324	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1325	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1326	(( i = 0 ))
1327	while (( i < iout ))
1328	do
1329	(( i = i + 1 ))
1330	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1331	then
1332	if [[ "${actionout[$i]}" = tr ]]
1333	then
1334	actionout[$i]=""
1335	elif [[ "${actionout[$i]}" = trpe ]]
1336	then
1337	actionout[$i]=pe
1338	elif [[ "${actionout[$i]}" = tra ]]
1339	then
1340	actionout[$i]=a
1341	fi
1342	(( maxcycle = 0 ))
1343	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1344	eval catalogname=${pathout[$i]}
1345	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1346	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1347	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1348	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1349	then
1350
1351	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1352	if cat /dev/null > $filename
1353	then
1354	rm $filename
1355	else
1356
1357	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1358	if [[ ! -d $catalogname ]]
1359	then
1360	if mkdir -p $catalogname
1361	then
1362	printf "\n\n *** directory:"
1363	printf "\n $catalogname"
1364	printf "\n was created\n"
1365	else
1366	printf "\n\n +++ OUTPUT-file:"
1367	printf "\n $filename"
1368	printf "\n cannot be created, because directory does not exist"
1369	printf "\n and cannot be created either"
1370	printf "\n"
1371	locat=output ; exit
1372	fi 2>/dev/null
1373	else
1374	printf "\n\n +++ OUTPUT-file:"
1375	printf "\n $filename"
1376	printf "\n cannot be created, although directory exists"
1377	printf "\n"
1378	locat=output ; exit
1379	fi
1380	fi 2>/dev/null
1381	else
1382
1383	# ZYKLUSNUMMER FESTSTELLEN
1384	ls -1 -d $filename > filelist 2>/dev/null
1385	ls -1 -d $filename.* >> filelist 2>/dev/null
1386	while read zeile
1387	do
1388	cycle=$(echo $zeile \| cut -f2 -d".")
1389	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1390	then
1391	(( icycle = 1 ))
1392	else
1393	(( icycle = $cycle + 1 ))
1394	fi
1395	if (( icycle > maxcycle ))
1396	then
1397	(( maxcycle = icycle ))
1398	fi
1399	done <filelist
1400	rm filelist
1401	fi
1402
1403	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1404	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1405	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1406	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1407	if [[ "${actionout[$i]}" != a ]]
1408	then
1409	if (( maxcycle > 0 ))
1410	then
1411	filename=${filename}.$maxcycle
1412	if cat /dev/null > $filename
1413	then
1414	rm $filename
1415	else
1416	printf "\n +++ OUTPUT-file:"
1417	printf "\n $filename"
1418	printf "\n cannot be created"
1419	locat=output ; exit
1420	fi
1421	fi
1422	else
1423	(( maxcycle = maxcycle - 1 ))
1424	if (( maxcycle > 0 ))
1425	then
1426	filename=${filename}.$maxcycle
1427	fi
1428	fi
1429
1430	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1431	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1432	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1433	pathout[$i]=$filename
1434	if (( maxcycle > 0 ))
1435	then
1436	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1437	else
1438	frelout[$i]=${fname}${endout[$i]}
1439	fi
1440
1441	fi
1442	done
1443
1444
1445	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1446	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1447	then
1448	if [[ "$dvr_inc" = "" ]]
1449	then
1450	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1451	printf "\n This is required for the dvrp_graphics package.\n"
1452	locat=dvr; exit
1453	fi
1454	if [[ "$dvr_lib" = "" ]]
1455	then
1456	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1457	printf "\n This is required for the dvrp_graphics package.\n"
1458	locat=dvr; exit
1459	fi
1460	fi
1461
1462
1463	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1464	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1465	# UEBERSETZT ZU WERDEN)
1466	if [[ "$mainprog" = "" && "$executable" = "" ]]
1467	then
1468	printf "\n +++ neither main program nor executable defined"
1469	locat=source; exit
1470	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1471	then
1472	printf "\n +++ main program as well as executable defined"
1473	locat=source; exit
1474	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1475	then
1476	do_compile=false
1477	fi
1478
1479
1480	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1481	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1482	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1483	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1484	then
1485	rm -rf SOURCES_FOR_RUN_$fname
1486	mkdir SOURCES_FOR_RUN_$fname
1487	fi
1488
1489
1490	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1491	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1492	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1493	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1494	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1495	then
1496
1497	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1498
1499	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1500	then
1501
1502	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1503	source_list=""
1504	cd $source_path
1505
1506
1507	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1508	if [[ ! -d .svn ]]
1509	then
1510	printf "\n\n +++ source directory"
1511	printf "\n \"$source_path\" "
1512	printf "\n is not under control of \"subversion\"."
1513	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1514	fi
1515
1516
1517	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1518	Filenames=""
1519	svn status > tmp_mrun
1520	while read line
1521	do
1522	firstc=`echo $line \| cut -c1`
1523	if [[ $firstc = M \|\| $firstc = "?" ]]
1524	then
1525	Name=`echo "$line" \| cut -c8-`
1526	extension=`echo $Name \| cut -d. -f2`
1527	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1528	then
1529	Filenames="$Filenames "$Name
1530	fi
1531	fi
1532	done < tmp_mrun
1533
1534
1535	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1536	for dateiname in $Filenames
1537	do
1538	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1539	source_list=$source_list"$dateiname "
1540	done
1541
1542	cd - > /dev/null
1543
1544
1545	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1546	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1547	# VORHANDEN
1548	elif [[ "$source_list" != "" && $restart_run != true ]]
1549	then
1550
1551	cd $source_path
1552
1553	for filename in $source_list
1554	do
1555
1556	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1557	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1558	then
1559	printf "\n +++ source code file: $filename"
1560	printf "\n must not contain (\"/\") "
1561	locat=source; exit
1562	fi
1563
1564	if [[ ! -f $filename ]]
1565	then
1566	printf "\n +++ source code file: $filename"
1567	printf "\n does not exist"
1568	locat=source; exit
1569	else
1570	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1571	fi
1572
1573	done
1574
1575	cd - > /dev/null
1576
1577	fi
1578
1579
1580	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1581	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1582	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1583	if [[ $restart_run != true ]]
1584	then
1585
1586	if [[ ! -f "$source_path/$mainprog" ]]
1587	then
1588	printf "\n\n +++ main program: $mainprog"
1589	printf "\n does not exist in source directory"
1590	printf "\n \"$source_path\"\n"
1591	locat=source; exit
1592	else
1593	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1594	then
1595	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1596	source_list=${mainprog}" $source_list"
1597	fi
1598	fi
1599	fi
1600
1601
1602	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1603	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1604	if [[ "$restart_run" != true ]]
1605	then
1606	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1607	if [[ ! -f $makefile ]]
1608	then
1609	printf "\n +++ file \"$makefile\" does not exist"
1610	locat=make; exit
1611	else
1612	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1613	fi
1614	fi
1615
1616
1617	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1618	if [[ $restart_run != true && "$add_source_path" != "" ]]
1619	then
1620
1621	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1622	if [[ ! -d $add_source_path ]]
1623	then
1624	printf "\n\n +++ WARNING: additional source code directory"
1625	printf "\n \"$add_source_path\" "
1626	printf "\n does not exist or is not a directory."
1627	printf "\n No source code will be used from this directory!\n"
1628	add_source_path=""
1629	if [[ $silent == false ]]
1630	then
1631	sleep 3
1632	fi
1633	else
1634
1635	cd $add_source_path
1636	found=false
1637
1638	Names=$(ls -1 *.f90 2>&1)
1639	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1640	Names=$(ls -1 *.F90 2>&1)
1641	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1642	Names=$(ls -1 *.F 2>&1)
1643	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1644	Names=$(ls -1 *.f 2>&1)
1645	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1646	Names=$(ls -1 *.c 2>&1)
1647	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1648
1649	cd - > /dev/null
1650	cd SOURCES_FOR_RUN_$fname
1651
1652	# COPY MAKEFILE IF EXISTING
1653	if [[ -f $add_source_path/Makefile ]]
1654	then
1655	printf "\n\n *** user Makefile from directory"
1656	printf "\n \"$add_source_path\" is used \n"
1657	if [[ $silent == false ]]
1658	then
1659	sleep 1
1660	fi
1661	cp $add_source_path/Makefile .
1662	fi
1663
1664	for dateiname in $AddFilenames
1665	do
1666	if [[ -f $dateiname ]]
1667	then
1668	printf "\n +++ source code file \"$dateiname\" found in additional"
1669	printf "\n source code directory \"$add_source_path\" "
1670	printf "\n but was also given with option \"-s\" which means that it should be taken"
1671	printf "\n from directory \"$source_path\"."
1672	locat=source; exit
1673	fi
1674
1675	cp $add_source_path/$dateiname .
1676	source_list="$source_list $dateiname"
1677
1678	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1679	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1680	then
1681	printf "\n\n +++ user file \"$dateiname\" "
1682	printf "\n is not listed in Makefile \n"
1683	locat=source; exit
1684	else
1685
1686	# Default User-Interface von der Liste entfernen, falls Datei
1687	# ein User-Interface enthaelt
1688	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1689	# then
1690	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1691	# then
1692	# rm -rf user_interface.f90
1693	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1694	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1695	# printf "\n since a user-interface is found in file"
1696	# printf "\n \"$add_source_path/$dateiname\" \n"
1697	# sleep 3
1698	# else
1699	if [[ $found = false ]]
1700	then
1701	found=true
1702	printf "\n\n *** following user file(s) added to the"
1703	printf " files to be translated:\n "
1704	fi
1705	printf "$dateiname "
1706	if [[ $silent == false ]]
1707	then
1708	sleep 0.5
1709	fi
1710
1711	fi
1712	done
1713	[[ $found = true ]] && printf "\n"
1714	cd - > /dev/null
1715	fi
1716	fi
1717
1718
1719	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1720	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1721	if [[ $restart_run != true && -n $package_list ]]
1722	then
1723
1724	cd $source_path
1725
1726	for package in $package_list
1727	do
1728
1729	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1730
1731	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1732	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1733	# LIEFERT
1734	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1735
1736
1737	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1738	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1739	for source_list_name in $package_source_list
1740	do
1741	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1742	then
1743
1744	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1745	ending=`echo $source_list_name \| cut -f2 -d.`
1746	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1747	then
1748	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1749	source_list="$source_list $source_list_name"
1750	fi
1751	fi
1752	done
1753	done
1754
1755	cd - > /dev/null
1756	fi
1757
1758
1759	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1760	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1761	# if [[ "$restart_run" != true ]]
1762	# then
1763	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1764	# if [[ ! -f $makefile ]]
1765	# then
1766	# printf "\n +++ file \"$makefile\" does not exist"
1767	# locat=make; exit
1768	# else
1769	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1770	# fi
1771	# fi
1772
1773	fi # do_compile=true
1774
1775
1776	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1777	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1778	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1779	then
1780
1781	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1782	# ZUSAMMENSETZEN
1783	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1784	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1785	then
1786	cpp_options="${cpp_options},-D__ibm=__ibm"
1787	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1788	then
1789	cpp_options="$cpp_options -D__nec"
1790	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1791	then
1792	cpp_options="$cpp_options -D__lc"
1793	else
1794	cpp_options="$cpp_options -D__$localhost"
1795	fi
1796
1797	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1798	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1799	then
1800	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1801	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1802	else
1803	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1804	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1805	fi
1806
1807	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1808	if [[ -n $package_list ]]
1809	then
1810	for package in $package_list
1811	do
1812	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1813	then
1814	if [[ $package != "dvrp_graphics+1PE" ]]
1815	then
1816	cpp_options="${cpp_options},-D__$package=__$package"
1817	else
1818	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1819	export use_seperate_pe_for_dvrp_output=true
1820	fi
1821	else
1822	if [[ $package != "dvrp_graphics+1PE" ]]
1823	then
1824	cpp_options="$cpp_options -D__$package"
1825	else
1826	cpp_options="$cpp_options -D__dvrp_graphics"
1827	export use_seperate_pe_for_dvrp_output=true
1828	fi
1829	fi
1830	done
1831	fi
1832
1833	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1834	if [[ -n $cpp_opts ]]
1835	then
1836	for popts in $cpp_opts
1837	do
1838	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1839	then
1840	cpp_options="${cpp_options},-D__$popts=__$popts"
1841	else
1842	cpp_options="$cpp_options -D__$popts"
1843	fi
1844	done
1845	fi
1846
1847	else
1848
1849
1850	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1851	if [[ $do_remote = false ]]
1852	then
1853	if [[ ! -f $executable ]]
1854	then
1855	printf "\n +++ executable file: $executable"
1856	printf "\n does not exist"
1857	locat=executable; exit
1858	fi
1859	fi
1860	fi
1861
1862
1863	# JOBMODUS FESTSTELLEN
1864	if [[ "$ENVIRONMENT" = BATCH ]]
1865	then
1866	jobmo=BATCH
1867	else
1868	jobmo=INTERACTIVE
1869	fi
1870
1871
1872	# no interactive runs on lctit
1873	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1874	then
1875	printf "\n +++ no interactive runs allowed on host \"$host\" "
1876	printf "\n please submit batch job using mrun option \"-b\" \n"
1877	locat=normal; exit
1878	fi
1879
1880
1881	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1882	# DURCH BENUTZER ANDERWEITIG VEREINBART
1883	if [[ "$compiler_name" = "" ]]
1884	then
1885
1886	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1887	locat=compiler_name; exit
1888
1889	fi
1890
1891
1892	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1893	[[ $localhost = necriam ]] && compiler_name=mpif90
1894
1895
1896
1897	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1898	kennung=$RANDOM
1899	if [[ "$tmp_user_catalog" = "" ]]
1900	then
1901	if [[ $localhost = ibmh ]]
1902	then
1903	tmp_user_catalog=$SCRATCH
1904	elif [[ $localhost = nech ]]
1905	then
1906	tmp_user_catalog=$WRKSHR
1907	else
1908	tmp_user_catalog=/tmp
1909	fi
1910	fi
1911	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1912
1913
1914	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1915	# BESTIMMEN
1916	if [[ "$tmp_data_catalog" = "" ]]
1917	then
1918	if [[ $localhost = nech ]]
1919	then
1920	tmp_data_catalog=$WRKSHR/mrun_restart_data
1921	else
1922	tmp_data_catalog=/tmp/mrun_restart_data
1923	fi
1924	fi
1925
1926
1927	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1928	# ERSETZEN
1929	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1930	then
1931	eval fopts=\"$fopts\"
1932	eval lopts=\"$lopts\"
1933	fi
1934
1935
1936
1937	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1938	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1939	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1940	ROPTS="$ropts"
1941	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1942	# then
1943	XOPT="-X $numprocs"
1944	# fi
1945
1946
1947
1948	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1949	# GRAMM BENOETIGT
1950	done=false
1951	while [[ $done = false ]]
1952	do
1953	cputime=$cpumax
1954	if (( $cputime == 0 ))
1955	then
1956	if [[ $do_batch = true ]]
1957	then
1958	printf "\n +++ cpu-time is undefined"
1959	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1960	printf "\n >>> "
1961	read cputime 1>/dev/null 2>&1
1962	else
1963	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1964	fi
1965	else
1966	done=true
1967	fi
1968	cpumax=$cputime
1969	done
1970
1971	(( minuten = cputime / 60 ))
1972	(( sekunden = cputime - minuten * 60 ))
1973
1974
1975	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1976	if [[ $do_batch = true ]]
1977	then
1978	done=false
1979	while [[ $done = false ]]
1980	do
1981	if (( memory == 0 ))
1982	then
1983	printf "\n +++ memory demand is undefined"
1984	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1985	printf "\n >>> "
1986	read memory 1>/dev/null 2>&1
1987	else
1988	done=true
1989	fi
1990	done
1991	fi
1992
1993
1994	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1995	if [[ $do_remote = true && -z $remote_username ]]
1996	then
1997	while [[ -z $remote_username ]]
1998	do
1999	printf "\n +++ username on remote host \"$host\" is undefined"
2000	printf "\n >>> Please type username:"
2001	printf "\n >>> "
2002	read remote_username
2003	done
2004	mc="$mc -u$remote_username"
2005	fi
2006
2007	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2008	if [[ "$login_init_cmd" != "" ]]
2009	then
2010	export init_cmds="${login_init_cmd};"
2011	fi
2012
2013
2014	# set module load command and export for subjob
2015	if [[ "$modules" != "" ]]
2016	then
2017	if [[ $host = lctit ]]
2018	then
2019	export module_calls=". $modules"
2020	else
2021	export module_calls="module load ${modules};"
2022	fi
2023	fi
2024
2025	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2026	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2027	then
2028	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2029	then
2030	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2031	fi
2032	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2033	# then
2034	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2035	# echo "*** module_calls = $module_calls"
2036	# fi
2037	fi
2038
2039
2040	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2041	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2042	then
2043	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2044	then
2045	mpilib=mpt
2046	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2047	then
2048	mpilib=mvapich
2049	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2050	then
2051	mpilib=impi
2052	fi
2053	fi
2054
2055
2056
2057	###########################################################################
2058	# HEADER-AUSGABE
2059	###########################################################################
2060
2061
2062	calltime=$(date)
2063	printf "\n"
2064	# [[ $silent = false ]] && clear
2065	printf "#------------------------------------------------------------------------# \n"
2066	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2067	printf "\| \| \n"
2068	spalte1="called on:"; spalte2=$localhost_realname
2069	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2070	if [[ $local_compile = false ]]
2071	then
2072	if [[ $do_remote = true ]]
2073	then
2074	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2075	else
2076	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2077	fi
2078	else
2079	spalte1="compiling test only!"; spalte2=""
2080	fi
2081	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2082	if [[ -n $numprocs ]]
2083	then
2084	if [[ $run_coupled_model = false ]]
2085	then
2086	spalte1="number of PEs:"; spalte2=$numprocs
2087	else
2088	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2089	fi
2090	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2091	fi
2092	if [[ -n $tasks_per_node ]]
2093	then
2094	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2095	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2096	fi
2097	if [[ $maximum_parallel_io_streams != $numprocs ]]
2098	then
2099	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2100	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2101	fi
2102	if [[ $use_openmp = true ]]
2103	then
2104	spalte1="threads per task:"; spalte2="$threads_per_task"
2105	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2106	fi
2107	printf "\| \| \n"
2108	if [[ $do_compile = true ]]
2109	then
2110	if [[ "$mopts" != "" ]]
2111	then
2112	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2113	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2114	zeile=$(echo "$mopts" \| cut -c46-)
2115	while [[ "$zeile" != "" ]]
2116	do
2117	spalte1=""
2118	spalte2=$(echo "$zeile" \| cut -c-45)
2119	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2120	zeile=$(echo "$zeile" \| cut -c46-)
2121	done
2122	fi
2123
2124	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2126	zeile=$(echo "$cpp_options" \| cut -c46-)
2127	while [[ "$zeile" != "" ]]
2128	do
2129	spalte1=""
2130	spalte2=$(echo "$zeile" \| cut -c-45)
2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2132	zeile=$(echo "$zeile" \| cut -c46-)
2133	done
2134
2135	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2136	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2137	zeile=$(echo "$fopts" \| cut -c46-)
2138	while [[ "$zeile" != "" ]]
2139	do
2140	spalte1=""
2141	spalte2=$(echo "$zeile" \| cut -c-45)
2142	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2143	zeile=$(echo "$zeile" \| cut -c46-)
2144	done
2145
2146	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2147	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2148	zeile=$(echo "$lopts" \| cut -c46-)
2149	while [[ "$zeile" != "" ]]
2150	do
2151	spalte1=""
2152	spalte2=$(echo "$zeile" \| cut -c-45)
2153	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2154	zeile=$(echo "$zeile" \| cut -c46-)
2155	done
2156
2157	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2158	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2159	zeile=$(echo "$modules" \| cut -c46-)
2160	while [[ "$zeile" != "" ]]
2161	do
2162	spalte1=""
2163	spalte2=$(echo "$zeile" \| cut -c-45)
2164	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2165	zeile=$(echo "$zeile" \| cut -c46-)
2166	done
2167
2168	spalte1="main program:"; spalte2=$mainprog
2169	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2170	else
2171	spalte1=executable:; spalte2=$executable
2172	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2173	fi
2174	printf "\| \| \n"
2175	spalte1="base name of files:"; spalte2=$fname
2176	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2177	if [[ $fname != $afname ]]
2178	then
2179	spalte1="base name of input files:"; spalte2=$afname
2180	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2181	fi
2182	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2183	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2184	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2185	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2186
2187	if [[ "$ocean_file_appendix" = true ]]
2188	then
2189	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2190	fi
2191
2192	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2193	then
2194	spalte1="memory demand / PE":; spalte2="$memory MB"
2195	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2196	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2197	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2198	fi
2199
2200	if [[ $do_compile = true ]]
2201	then
2202	printf "\| \| \n"
2203	printf "\| Files to be compiled: \| \n"
2204	zeile=$source_list
2205	while [[ "$zeile" != "" ]]
2206	do
2207	linestart=$(echo $zeile \| cut -c-70)
2208	printf "\| %-70s \| \n" "$linestart"
2209	zeile=$(echo "$zeile" \| cut -c71-)
2210	done
2211	fi
2212	printf "#------------------------------------------------------------------------#"
2213
2214
2215
2216	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2217	if [[ $do_trace = true ]]
2218	then
2219	(( i = 0 ))
2220	while (( i < iin ))
2221	do
2222	(( i = i + 1 ))
2223	if (( i == 1 ))
2224	then
2225	printf "\n\n >>> INPUT-file assignments:\n"
2226	fi
2227	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2228	done
2229	(( i = 0 ))
2230	while (( i < iout ))
2231	do
2232	(( i = i + 1 ))
2233	if (( i == 1 ))
2234	then
2235	printf "\n\n >>> OUTPUT-file assignments:\n"
2236	fi
2237	printf "\n ${localout[$i]} : ${pathout[$i]}"
2238	done
2239	(( i = 0 ))
2240	while (( i < iic ))
2241	do
2242	(( i = i + 1 ))
2243	if (( i == 1 ))
2244	then
2245	printf "\n\n >>> INPUT-commands:\n"
2246	fi
2247	printf "\n ${in_command[$i]}"
2248	done
2249	(( i = 0 ))
2250	while (( i < ioc ))
2251	do
2252	(( i = i + 1 ))
2253	if (( i == 1 ))
2254	then
2255	printf "\n\n >>> OUTPUT-commands:\n"
2256	fi
2257	printf "\n ${out_command[$i]}"
2258	done
2259	fi
2260
2261
2262	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2263	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2264	then
2265	antwort=dummy
2266	printf "\n\n"
2267	printf " >>> everything o.k. (y/n) ? "
2268	while read antwort
2269	do
2270	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2271	then
2272	printf " >>> everything o.k. (y/n) ? "
2273	else
2274	break
2275	fi
2276	done
2277	if [[ $antwort = n \|\| $antwort = N ]]
2278	then
2279	locat=user_abort; (( iec = 0 )); exit
2280	fi
2281	if [[ $do_batch = true ]]
2282	then
2283	printf " >>> batch-job will be created and submitted"
2284	else
2285	if [[ $local_compile = false ]]
2286	then
2287	printf " >>> MRUN will now continue to execute on this machine"
2288	else
2289	printf " >>> a test compilation will now be carried out on this machine"
2290	fi
2291	fi
2292	fi
2293
2294
2295	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2296	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2297	check_depository="${working_directory}/trunk/UTIL"
2298	check_sources="${working_directory}/tmp_check_namelist_files"
2299	skip_check=false
2300
2301	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2302	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2303	then
2304	skip_check=true
2305	reason="run on remote host or parameter file check has not been compiled."
2306	fi
2307	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2308	then
2309	skip_check=true
2310	reason="parameter file check has not been compiled."
2311	fi
2312
2313	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2314	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2315	then
2316	skip_check=true
2317	reason="serial run."
2318	fi
2319
2320	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2321	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2322	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2323	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2324	if [[ $check_namelist_files == false ]]
2325	then
2326	skip_check=true
2327	reason="-z option set."
2328	fi
2329
2330	if [[ $fromhost != $localhost ]]
2331	then
2332	skip_check=true
2333	reason="submitting host is local host."
2334	fi
2335
2336	if [[ $run_coupled_model == true ]]
2337	then
2338	skip_check=true
2339	reason="coupled run."
2340	fi
2341
2342	if [[ $restart_run == true ]]
2343	then
2344	skip_check=true
2345	reason="restart run."
2346	fi
2347
2348	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2349	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2350	last_char=`echo $filename_input \| cut -c $last_char_int`
2351	if [[ "$last_char" == "f" ]]
2352	then
2353	skip_check=true
2354	reason="restart run."
2355	fi
2356
2357	if [[ $skip_check == false ]]
2358	then
2359	tmp_check=${working_directory}/tmp_check
2360
2361	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2362	# NOT NECESSARILY REQUIRED
2363	line=""
2364	found=false
2365	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2366	while read line1
2367	do
2368	line="$line1"
2369	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2370	then
2371	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2372	found=true
2373	fi
2374	done < $tmp_check
2375
2376	if [[ $found = false ]]
2377	then
2378	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2379	fi
2380
2381	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2382	# NOT NECESSARILY REQUIRED
2383	line=""
2384	found=false
2385	grep "NUDGING_DATA" $config_file > $tmp_check
2386	while read line1
2387	do
2388	line="$line1"
2389	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2390	then
2391	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2392	found=true
2393	fi
2394	done < $tmp_check
2395
2396	if [[ $found = false ]]
2397	then
2398	printf "\n +++ no NUDGING list entry found in the configuration file."
2399	fi
2400
2401	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2402	# NOT NECESSARILY REQUIRED
2403	line=""
2404	found=false
2405	grep "LSF_DATA" $config_file > $tmp_check
2406	while read line1
2407	do
2408	line="$line1"
2409	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2410	then
2411	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2412	found=true
2413	fi
2414	done < $tmp_check
2415
2416	if [[ $found = false ]]
2417	then
2418	printf "\n +++ no LSF list entry found in the configuration file."
2419	fi
2420
2421	rm -rf ${working_directory}/tmp_check
2422
2423	# CHECK IF THE P3DF FILE MUST BE CHECKED
2424	for item in $input_list
2425	do
2426	if [[ "$item" == "restart" ]]
2427	then
2428	check_restart=1
2429	else
2430	check_restart=0
2431	fi
2432	done
2433
2434	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2435	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2436	then
2437	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2438	locat=check_namelist; exit
2439	fi
2440
2441	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2442	if [[ $check_restart == 1 ]]
2443	then
2444
2445	filenamef="${filename_input}f"
2446	if [[ ! -f $filenamef ]]
2447	then
2448	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2449	check_restart=0
2450	answer=dummy
2451	printf "\n\n"
2452
2453	if [[ $silent == false ]]
2454	then
2455	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2456	do
2457	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2458	read answer
2459	done
2460	if [[ $answer = a \|\| $answer = A ]]
2461	then
2462	printf "\n +++ Aborting...."
2463	locat=normal; exit
2464	fi
2465	fi
2466	else
2467	check_restart=1
2468	fi
2469	fi
2470
2471	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2472	mkdir $check_sources
2473	cd $check_sources
2474
2475
2476	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2477	if [[ -d $add_source_path ]]
2478	then
2479	printf "\n\n *** copying files from $check_depository"
2480	cp $check_depository/check_namelist_files.tar ./
2481
2482	printf "\n\n *** untar of makefile and source files in $check_sources"
2483	tar -xf check_namelist_files.tar > /dev/null 2>&1
2484
2485	printf "\n\n *** adding user code."
2486	cp $add_source_path/* ./
2487	touch check_namelist_files.f90
2488
2489	# GET COMPILER OPTIONS AND PERFORM MAKE
2490	printf "\n\n *** compiling code if necessary...\n"
2491
2492	# workaround for batch jobs on local machine (lcxe6)
2493	if [[ $do_batch == true && $do_remote == false ]]
2494	then
2495	eval $init_cmds
2496	fi
2497
2498	# GET CHECK OPTIONS
2499	line=""
2500	found=false
2501
2502	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2503
2504	while read line1
2505	do
2506
2507	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2508	then
2509	line="$line1"
2510	fi
2511
2512	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2513	then
2514	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2515	line="$line "
2516	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2517	found=true
2518	fi
2519
2520	done < $tmp_check
2521	copts_check="$copts_check -D__check -D__parallel"
2522
2523	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2524
2525	# GET MAKE OUTPUT
2526	if [[ $? != 0 ]]
2527	then
2528	printf "\n +++ error during make."
2529	answer=dummy
2530	printf "\n\n"
2531	if [[ $silent == false ]]
2532	then
2533	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2534	do
2535	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2536	read answer
2537	done
2538	if [[ $answer = a \|\| $answer = A ]]
2539	then
2540	printf "\n +++ Aborting..."
2541	rm -rf $check_sources
2542	locat=normal; exit
2543	else
2544	skip_check=true
2545	fi
2546	else
2547	skip_check=true
2548	fi
2549	fi
2550	else
2551	cp $PALM_BIN/check_namelist_files.x ./
2552	fi
2553
2554	cp $filename_input ./PARIN
2555	if [[ $check_restart == 1 ]]
2556	then
2557	cp $filenamef ./PARINF
2558	fi
2559
2560	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2561	then
2562	printf "\n *** adding topography data"
2563	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2564
2565	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2566	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2567	# WHICH REQUIRE SUFFICIENT MEMORY
2568	ulimit -s unlimited
2569	fi
2570
2571	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2572	then
2573	printf "\n *** adding nudging data"
2574	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2575	fi
2576
2577	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2578	then
2579	printf "\n *** adding large scale forcing data"
2580	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2581	fi
2582
2583	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2584	cat > ENVPAR << %%END%%
2585	&envpar run_identifier = '$fname', host = '$host',
2586	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2587	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2588	maximum_cpu_time_allowed = ${cpumax}.,
2589	revision = '$global_revision',
2590	local_dvrserver_running = $local_dvrserver_running /
2591
2592	%%END%%
2593
2594	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2595	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2596	then
2597	printf "\n +++ WARNING: check_namelist_files.x not found."
2598	answer=dummy
2599	printf "\n\n"
2600
2601	if [[ $silent == false ]]
2602	then
2603	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2604	do
2605	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2606	read answer
2607	done
2608	if [[ $answer = a \|\| $answer = A ]]
2609	then
2610	printf "\n +++ Aborting..."
2611	rm -rf $check_sources
2612	locat=normal; exit
2613	else
2614	printf "\n *** skipping parameter file check."
2615	fi
2616	fi
2617
2618	elif [[ $skip_check == false ]]
2619	then
2620	# STARTING THE PARAMETER FILE CHECK
2621	printf "\n\n *** starting parameter file check..."
2622
2623	# CHECKING THE P3D FILE
2624	printf "\n\n (1) checking $filename_input"
2625	echo "$numprocs 0 0" > VARIN
2626	errors=`./check_namelist_files.x < VARIN 2>&1`
2627
2628	check_error=false
2629	if [[ "$errors" == "" ]]
2630	then
2631	printf " --> o.k."
2632	else
2633	printf " --> failed."
2634	check_error=true
2635	printf "\n\n $errors"
2636	fi
2637
2638	# CHECKING THE PD3F FILE IF NECESSARY
2639	if [[ $check_restart == 1 && $check_error == false ]]
2640	then
2641	printf "\n\n (2) checking $filenamef"
2642
2643	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2644	# IN &INIPAR LIST
2645	found=false
2646	cat PARINF \| while read line
2647	do
2648	line=$(echo $line\|sed 's/ //g')
2649	if [[ $line == "&inipar" ]]
2650	then
2651	start_search=true
2652	fi
2653
2654	if [[ $start_search == true ]]
2655	then
2656	if [[ $line == "initializing_actions='read_restart_data'" ]]
2657	then
2658	found=true
2659	break
2660	fi
2661	fi
2662
2663	if [[ $line == "/" ]]
2664	then
2665	start_search=false
2666	fi
2667
2668	done
2669
2670	if [[ $found = false ]]
2671	then
2672	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2673	printf "\n in &inipar list in $fname$p3df_suffix."
2674	rm -rf $check_sources
2675	locat=check_namelist; exit
2676	fi
2677
2678	# READ max_user_pr FROM FILES
2679	if [[ -f parin_for_check ]]
2680	then
2681	read max_pr_user < parin_for_check
2682	else
2683	max_user_pr=0
2684	fi
2685
2686	echo "$numprocs 1 $max_pr_user" > VARIN
2687	errors=`./check_namelist_files.x < VARIN 2>&1`
2688
2689	if [[ "$errors" == "" ]]
2690	then
2691	printf " --> o.k."
2692	else
2693	printf " --> failed."
2694	check_error=true
2695	printf "\n\n $errors"
2696	fi
2697	fi
2698
2699	# REPORT ERRORS AND CONTINUE/EXIT
2700	if [[ $check_error == true ]]
2701	then
2702	printf "\n +++ errors found in the parameter file!\n"
2703	answer=dummy
2704	printf "\n\n"
2705
2706	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2707	do
2708	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2709	read answer
2710	done
2711
2712	if [[ $answer = a \|\| $answer = A ]]
2713	then
2714	printf "\n +++ Aborting..."
2715	rm -rf $check_sources
2716	locat=normal; exit
2717	fi
2718	else
2719	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2720	fi
2721	rm -rf $check_sources
2722	fi
2723	else
2724	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2725	fi
2726
2727	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2728	rm -rf $check_sources
2729	cd $working_directory
2730
2731
2732	# DETERMINE PATH FOR MAKE DEPOSITORY
2733	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2734	then
2735
2736	line=""
2737	grep "%depository_path" $config_file > tmp_mrun
2738	while read line
2739	do
2740	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2741	then
2742	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2743	then
2744	global_depository_path=`echo $line \| cut -d" " -s -f2`
2745	fi
2746	fi
2747	done < tmp_mrun
2748
2749	line=""
2750	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2751	while read line
2752	do
2753	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2754	then
2755	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2756	then
2757	local_depository_path=`echo $line \| cut -d" " -s -f2`
2758	fi
2759	fi
2760	done < tmp_mrun
2761
2762	if [[ "$local_depository_path" = "" ]]
2763	then
2764	if [[ "$global_depository_path" != "" ]]
2765	then
2766	local_depository_path=$global_depository_path
2767	else
2768	printf "\n\n +++ no depository path found in configuration file"
2769	printf "\n for local host \"$localhost\" "
2770	printf "\n please set \"\%depository_path\" in configuration file\n"
2771	locat=config_file; exit
2772	fi
2773	fi
2774	eval local_depository_path=$local_depository_path
2775	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2776	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2777
2778
2779	basename=`echo $mainprog \| cut -f1 -d"."`
2780	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2781	if [[ ! -f $make_depository ]]
2782	then
2783	printf "\n"
2784	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2785	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2786	fi
2787
2788	fi
2789
2790
2791	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2792	# CHENDE AKTIONEN DURCHGEFUEHRT
2793	if [[ $do_batch = false ]]
2794	then
2795
2796
2797	# TEMPORAEREN KATALOG ERZEUGEN
2798	mkdir -p $TEMPDIR
2799	chmod go+rx $TEMPDIR
2800	tmpcreate=true
2801
2802
2803	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2804	# TEMPORAERES VERZEICHNIS KOPIEREN
2805	if [[ $do_compile = true ]]
2806	then
2807
2808	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2809	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2810	if [[ $localhost = nech ]]
2811	then
2812	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2813	if mkdir -p $TEMPDIR_COMPILE
2814	then
2815	printf "\n *** \"$TEMPDIR_COMPILE\" "
2816	printf "\n is generated as temporary directory for cross compiling\n"
2817	else
2818	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2819	printf "\n needed for cross compilation failed"
2820	locat=compile
2821	exit
2822	fi
2823	else
2824	TEMPDIR_COMPILE=$TEMPDIR
2825	fi
2826
2827	cp $make_depository $TEMPDIR_COMPILE
2828	cd $TEMPDIR_COMPILE
2829	tar -xf $make_depository > /dev/null 2>&1
2830	cd - > /dev/null
2831
2832	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2833	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2834	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2835
2836	else
2837
2838	cp $executable ${TEMPDIR}/a.out
2839
2840	fi
2841
2842
2843	# WECHSEL IN TEMPORAEREN KATALOG
2844	cd $TEMPDIR
2845	printf "\n *** changed to temporary directory: $TEMPDIR"
2846
2847
2848	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2849	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2850	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2851	# ERMITTELN
2852	(( i = 0 ))
2853	while (( i < iout ))
2854	do
2855	(( i = i + 1 ))
2856	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2857	then
2858	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2859	else
2860	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2861	fi
2862	done
2863
2864
2865	# IF REQUIRED, START WITH COMPILING ACTIONS
2866	if [[ $do_compile = true ]]
2867	then
2868
2869
2870	if [[ -f a.out ]]
2871	then
2872
2873	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2874	printf "\n\n\n *** executable a.out found"
2875	printf "\n no compilation required \n"
2876
2877	else
2878
2879	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2880	printf "\n\n\n *** compilation starts \n$striche\n"
2881	printf " *** compilation with make using following options:\n"
2882	printf " make depository: $make_depository"
2883	if [[ "$mopts" != "" ]]
2884	then
2885	printf " make options: $mopts\n"
2886	fi
2887	printf " compilername: $compiler_name\n"
2888	printf " compiler options: $fopts\n"
2889	printf " preprocessor directives: $cpp_options \n"
2890	printf " linker options: $lopts \n"
2891	if [[ "$modules" != "" ]]
2892	then
2893	printf " modules to be load: $modules \n"
2894	fi
2895	printf " source code files: $source_list \n"
2896
2897	if [[ $localhost = nech ]]
2898	then
2899	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2900	cp $TEMPDIR_COMPILE/a.out .
2901	[[ $? != 0 ]] && compile_error=true
2902	rm -rf $TEMPDIR_COMPILE
2903	elif [[ $localhost = ibmh ]]
2904	then
2905	printf " compiler is called via ssh on \"plogin1\" \n"
2906	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2907	[[ ! -f a.out ]] && compile_error=true
2908	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2909	elif [[ $localhost = lcsgib ]]
2910	then
2911	printf " compiler is called via ssh on \"bicegate0\" \n"
2912	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2913	[[ ! -f a.out ]] && compile_error=true
2914	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2915	elif [[ $localhost = lcsgih ]]
2916	then
2917	printf " compiler is called via ssh on \"hicegate0\" \n"
2918	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2919	[[ ! -f a.out ]] && compile_error=true
2920	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2921	elif [[ $localhost = lcflow ]]
2922	then
2923	printf " compiler is called via ssh on \"flow\" \n"
2924	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2925	[[ ! -f a.out ]] && compile_error=true
2926	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2927	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf ]]
2928	then
2929	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2930	else
2931	[[ "$init_cmds" != "" ]] && eval $init_cmds
2932	[[ "$module_calls" != "" ]] && eval $module_calls
2933	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2934	fi
2935
2936	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2937	then
2938	printf "\n +++ error occured while compiling or linking"
2939	locat=compile
2940
2941	exit
2942	else
2943	printf "$striche\n *** compilation finished \n"
2944	fi
2945
2946	fi
2947
2948	fi
2949
2950
2951	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2952	if [[ $local_compile = true ]]
2953	then
2954	cd $HOME
2955	rm -rf $TEMPDIR
2956	locat=local_compile; exit
2957	fi
2958
2959
2960	# BEREITSTELLEN DER INPUT-DATEIEN
2961	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2962	(( i = 0 ))
2963	while (( i < iin ))
2964	do
2965	(( i = i + 1 ))
2966	if (( i == 1 ))
2967	then
2968	printf "\n\n *** providing INPUT-files:\n$striche"
2969	fi
2970
2971
2972	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2973	if [[ "${transin[$i]}" = unavailable ]]
2974	then
2975	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2976	then
2977	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2978	printf "\n is not available!"
2979	else
2980	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2981	printf "\n is not available!"
2982	fi
2983	continue
2984	fi
2985
2986	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2987	files_for_pes=false; datentyp=file
2988	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2989	then
2990	files_for_pes=true; datentyp=directory
2991	actionin[$i]=""
2992	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2993	then
2994	actionin[$i]=""
2995	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2996	then
2997	files_for_pes=true; datentyp=directory
2998	actionin[$i]="ar"
2999	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3000	then
3001	actionin[$i]="ar"
3002	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3003	then
3004	files_for_pes=true; datentyp=directory
3005	actionin[$i]="fl"
3006	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3007	then
3008	actionin[$i]="fl"
3009	fi
3010
3011	if [[ $files_for_pes = true ]]
3012	then
3013	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3014	else
3015	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3016	fi
3017
3018	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3019	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3020	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3021	# SERVER ZU HOLEN
3022	if [[ "${actionin[$i]}" = fl ]]
3023	then
3024	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3025	if [[ $files_for_pes = false ]]
3026	then
3027	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3028	then
3029	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3030	got_tmp[$i]=true
3031	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3032	then
3033	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3034	printf "\n *** trying to use backup copy in \"$WORK\" "
3035	cp $WORK/${frelin[$i]} ${localin[$i]}
3036	else
3037	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3038	printf "\n or \"$tmp_data_catalog\" does not exist!"
3039	printf "\n *** trying to get copy from archive"
3040	actionin[$i]=ar
3041	fi
3042	else
3043	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3044	then
3045	mkdir ${localin[$i]}
3046	cd $tmp_data_catalog/${frelin[$i]}
3047	for file in $(ls *)
3048	do
3049	ln $file $TEMPDIR/${localin[$i]}
3050	done
3051	cd $TEMPDIR
3052	got_tmp[$i]=true
3053	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3054	then
3055	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3056	printf "\n *** trying to use backup copy in \"$WORK\" "
3057	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3058	else
3059	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3060	printf "\n or \"$tmp_data_catalog\" does not exist!"
3061	printf "\n *** trying to get copy from archive"
3062	actionin[$i]=ar
3063	fi
3064	fi
3065	fi
3066
3067
3068	# DATEI LIEGT AUF ARCHIV-SERVER
3069	if [[ "${actionin[$i]}" = ar ]]
3070	then
3071
3072	if [[ $files_for_pes = false ]]
3073	then
3074	printf "\n file will be restored from archive-system ($archive_system)!"
3075	else
3076	printf "\n directory will be restored from archive-system ($archive_system)!"
3077	fi
3078
3079	file_restored=false
3080
3081	if [[ $archive_system = asterix ]]
3082	then
3083	do_stagein=true
3084	(( stagein_anz = 0 ))
3085	while [[ $do_stagein = true ]]
3086	do
3087	if [[ $files_for_pes = false ]]
3088	then
3089	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3090	else
3091	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3092	fi
3093	cat STAGEIN_OUTPUT
3094	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3095	then
3096	file_restored=true
3097	do_stagein=false
3098	else
3099	(( stagein_anz = stagein_anz + 1 ))
3100	if (( stagein_anz == 10 ))
3101	then
3102	printf "\n +++ stagein stoped after 10 tries"
3103	locat=stage
3104	exit
3105	fi
3106	printf "\n +++ restoring from archive failed, trying again:"
3107	sleep 900
3108	fi
3109	done
3110	elif [[ $archive_system = DMF ]]
3111	then
3112	if [[ $files_for_pes = false ]]
3113	then
3114	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3115	locat=DMF
3116	exit
3117	else
3118	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3119	cp -r $ARCHIVE/${frelin[$i]} $PWD
3120	file_restored=true
3121	fi
3122	elif [[ $archive_system = tivoli ]]
3123	then
3124	if [[ $files_for_pes = false ]]
3125	then
3126	if [[ $localhost = lcsgih ]]
3127	then
3128	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3129	else
3130	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3131	fi
3132	else
3133	(( inode = 0 ))
3134	while (( inode < nodes ))
3135	do
3136	if [[ $localhost = lcsgih ]]
3137	then
3138	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3139	else
3140	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3141	fi
3142	(( inode = inode + 1 ))
3143	done
3144	fi
3145	file_restored=true
3146	elif [[ $archive_system = ut ]]
3147	then
3148	if [[ $files_for_pes = false ]]
3149	then
3150	cp $UT/${frelin[$i]} .
3151	else
3152	(( inode = 0 ))
3153	while (( inode < nodes ))
3154	do
3155	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3156	(( inode = inode + 1 ))
3157	done
3158	fi
3159	file_restored=true
3160	else
3161	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3162	locat=rearchive
3163	exit
3164	fi
3165
3166	if [[ $file_restored = true ]]
3167	then
3168
3169	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3170	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3171	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3172	if [[ $files_for_pes = false ]]
3173	then
3174	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3175	else
3176	mkdir $tmp_data_catalog/${frelin[$i]}
3177	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3178	fi
3179	got_tmp[$i]=true
3180
3181	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3182	mv ${frelin[$i]} ${localin[$i]}
3183
3184	fi
3185	fi
3186
3187
3188	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3189	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3190	then
3191
3192	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3193	then
3194
3195	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3196	printf "\n file will be provided for $numprocs processors"
3197	mkdir ${localin[$i]}
3198	ival=$numprocs
3199	(( ii = 0 ))
3200	while (( ii <= ival-1 ))
3201	do
3202	if (( ii < 10 ))
3203	then
3204	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3205	elif (( ii < 100 ))
3206	then
3207	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3208	elif (( ii < 1000 ))
3209	then
3210	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3211	else
3212	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3213	fi
3214	(( ii = ii + 1 ))
3215	done
3216
3217	else
3218
3219	if [[ $files_for_pes = true ]]
3220	then
3221
3222	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3223	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3224	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3225	# PER MOVE UMBENANNT WERDEN
3226	printf "\n providing $numprocs files for the respective processors"
3227	mkdir ${localin[$i]}
3228	if [[ $link_local_input = true ]]
3229	then
3230	printf " using ln -f\n"
3231	cd ${absnamein[$i]}
3232	for file in $(ls *)
3233	do
3234	ln -f $file ${localin[$i]}
3235	done
3236	cd $TEMPDIR
3237	fi
3238	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3239	if [[ ! -f "${localin[$i]}/_0000" ]]
3240	then
3241	if [[ $link_local_input = true ]]
3242	then
3243	printf " ln failed for .../_0000, using cp...\n"
3244	fi
3245	cp -r ${absnamein[$i]}/* ${localin[$i]}
3246	fi
3247
3248	else
3249	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3250	if [[ $link_local_input = true ]]
3251	then
3252	printf " using ln -f\n"
3253	ln -f ${absnamein[$i]} ${localin[$i]}
3254	fi
3255	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3256	if [[ ! -f "${localin[$i]}" ]]
3257	then
3258	if [[ $link_local_input = true ]]
3259	then
3260	printf " ln failed, using cp...\n"
3261	fi
3262	cp ${absnamein[$i]} ${localin[$i]}
3263	fi
3264	fi
3265	fi
3266	fi
3267
3268	done
3269	if (( i != 0 ))
3270	then
3271	printf "\n$striche\n *** all INPUT-files provided \n"
3272	fi
3273
3274
3275	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3276	(( i = 0 ))
3277	while (( i < iic ))
3278	do
3279	(( i = i + 1 ))
3280	if (( i == 1 ))
3281	then
3282	printf "\n\n *** execution of INPUT-commands:\n$striche"
3283	fi
3284	printf "\n >>> ${in_command[$i]}"
3285	eval ${in_command[$i]}
3286	if (( i == iic ))
3287	then
3288	printf "\n$striche\n"
3289	fi
3290	done
3291
3292
3293	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3294	cpurest=${cpumax}.
3295
3296
3297	# START DVR STREAMING SERVER
3298	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3299	then
3300	if [[ "$dvr_server" != "" ]]
3301	then
3302
3303	printf "\n\n *** preparing the dvr streaming server configuration file"
3304
3305	# Check, if a dvr server is already running
3306	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3307	if [[ "$running_dvrserver_id" != "" ]]
3308	then
3309
3310	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3311	printf "\n This server is used instead starting a new one!"
3312	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3313
3314	else
3315
3316	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3317	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3318	then
3319	cp ${PALM_BIN}/.dvrserver.config .
3320
3321	# Entering the BASEDIR, UID and GID into this file
3322	user_id=`id -u`
3323	group_id=`id -g`
3324	# & is needed as seperator, because TEMPDIR contains /
3325	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3326	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3327	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3328	mv .dvrserver.3 .dvrserver.config
3329	rm .dvrserver.1 .dvrserver.2
3330
3331	# Start dvr server in background, get his id and print on terminal
3332	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3333	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3334	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3335	local_dvrserver_running=.TRUE.
3336	else
3337	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3338	printf "\n \"$PALM_BIN\" "
3339	locat=dvr
3340	exit
3341	fi
3342
3343	fi
3344
3345	else
3346	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3347	fi
3348	fi
3349
3350
3351	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3352	# LESEN VON PALM)
3353	cat > ENVPAR << %%END%%
3354	&envpar run_identifier = '$fname', host = '$localhost',
3355	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3356	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3357	maximum_cpu_time_allowed = ${cpumax}.,
3358	revision = '$global_revision',
3359	local_dvrserver_running = $local_dvrserver_running /
3360
3361	%%END%%
3362
3363
3364	# PROGRAMMSTART
3365	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3366	PATH=$PATH:$TEMPDIR
3367
3368	# MPI debug option (argument checking, slows down execution due to increased latency)
3369	if [[ "$mpi_debug" = true ]]
3370	then
3371	export MPI_CHECK_ARGS=1
3372	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3373	fi
3374
3375	if [[ "$totalview" = true ]]
3376	then
3377	printf "\n *** totalview debugger will be used"
3378	tv_opt="-tv"
3379	else
3380	tv_opt=""
3381	fi
3382
3383	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3384	then
3385	if [[ "$ENVIRONMENT" = BATCH ]]
3386	then
3387	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3388	then
3389	printf "\n +++ debug is allowed in interactive mode only"
3390	locat=debug
3391	exit
3392	fi
3393	fi
3394	if [[ $localhost = ibmh ]]
3395	then
3396
3397	# SETUP THE IBM MPI ENVIRONMENT
3398	export MP_SHARED_MEMORY=yes
3399	export AIXTHREADS_SCOPE=S
3400	export OMP_NUM_THREADS=$threads_per_task
3401	export AUTHSTATE=files
3402	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3403
3404	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3405	export MP_ADAPTER_USE=shared
3406	export MP_CPU_USE=multiple
3407	export MP_TIMEOUT=1200
3408
3409	unset MP_TASK_AFFINITY
3410
3411	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3412	#(( ii = 1 ))
3413	#while (( ii <= $numprocs ))
3414	#do
3415	# echo $localhost_realname >> hostfile
3416	# (( ii = ii + 1 ))
3417	#done
3418	#export MP_HOSTFILE=hostfile
3419
3420	if [[ "$LOADLBATCH" = yes ]]
3421	then
3422	totalview poe a.out $ROPTS
3423	else
3424	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3425	export TVDSVRLAUNCHCMD=ssh
3426	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3427	fi
3428	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3429	then
3430	# CURRENTLY NO DEBUGGER ON LCSGI
3431	if [[ $run_coupled_model = true ]]
3432	then
3433	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3434	locat=debug
3435	exit
3436	else
3437	echo "no_coupling" > runfile_atmos
3438	fi
3439	(( ii = $numprocs / $threads_per_task ))
3440	export OMP_NUM_THREADS=$threads_per_task
3441	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3442	if [[ $threads_per_task != 1 ]]
3443	then
3444	printf "\n threads per task: $threads_per_task"
3445	fi
3446	printf "\n\n"
3447	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3448	then
3449	# export MPI_LAUNCH_TIMEOUT=360
3450	if [[ "$totalview" = true ]]
3451	then
3452	printf "\n running totalview debugger"
3453	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3454	else
3455	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3456	fi
3457	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3458	then
3459	# ulimit -s 300000 # A too large stack size causes problems
3460	# export MV2_NUM_PORTS=2
3461	# export MV2_CPU_MAPPING=0:1:2:3
3462	if [[ "$totalview" = true ]]
3463	then
3464	printf "\n running totalview debugger"
3465	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3466	else
3467	mpiexec ./a.out $ROPTS < runfile_atmos
3468	fi
3469	fi
3470	else
3471	printf "\n +++ no debug available on \"$localhost\" "
3472	printf "\n or not implemented in mrun so far"
3473	locat=debug
3474	exit
3475	fi
3476
3477	# end debug mode
3478	else
3479
3480	# normal execution
3481	if [[ -n $numprocs ]]
3482	then
3483	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3484	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3485	then
3486	# SETUP THE IBM MPI ENVIRONMENT
3487	if [[ $host != ibmh && $host != ibmkisti ]]
3488	then
3489	export MP_SHARED_MEMORY=yes
3490	export AIXTHREAD_SCOPE=S
3491	export OMP_NUM_THREADS=$threads_per_task
3492	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3493	export AUTHSTATE=files
3494	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3495	# export MP_PRINTENV=yes
3496
3497	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3498	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3499	export MP_WAIT_MODE=poll
3500	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3501	fi
3502
3503	if [[ $host = ibmkisti ]]
3504	then
3505	export LANG=en_US
3506	export MP_SHARED_MEMORY=yes
3507	if [[ $threads_per_task = 1 ]]
3508	then
3509	export MP_SINGLE_THREAD=yes
3510	export MEMORY_AFFINITY=MCM
3511	else
3512	export OMP_NUM_THREADS=$threads_per_task
3513	fi
3514	fi
3515
3516	if [[ "$LOADLBATCH" = yes ]]
3517	then
3518	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3519	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3520	then
3521	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3522	else
3523	if [[ $run_coupled_model = false ]]
3524	then
3525	if [[ "$ocean_file_appendix" = true ]]
3526	then
3527	echo "precursor_ocean" > runfile_atmos
3528	else
3529	echo "precursor_atmos" > runfile_atmos
3530	fi
3531	else
3532	(( iia = $numprocs_atmos / $threads_per_task ))
3533	(( iio = $numprocs_ocean / $threads_per_task ))
3534	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3535	printf "\n using $coupled_mode coupling"
3536	printf "\n\n"
3537	echo "coupled_run $iia $iio" > runfile_atmos
3538	fi
3539	poe ./a.out $ROPTS < runfile_atmos
3540	fi
3541	else
3542	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3543	then
3544	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3545	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3546	then
3547	if [[ -f $hostfile ]]
3548	then
3549	cp $hostfile hostfile
3550	else
3551	(( ii = 1 ))
3552	while (( ii <= $numprocs ))
3553	do
3554	echo $localhost_realname >> hostfile
3555	(( ii = ii + 1 ))
3556	done
3557	fi
3558	export MP_HOSTFILE=hostfile
3559	if [[ $run_coupled_model = false ]]
3560	then
3561	if [[ "$ocean_file_appendix" = true ]]
3562	then
3563	echo "precursor_ocean" > runfile_atmos
3564	else
3565	echo "precursor_atmos" > runfile_atmos
3566	fi
3567	else
3568	(( iia = $numprocs_atmos / $threads_per_task ))
3569	(( iio = $numprocs_ocean / $threads_per_task ))
3570	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3571	printf "\n using $coupled_mode coupling"
3572	printf "\n\n"
3573	echo "coupled_run $iia $iio" > runfile_atmos
3574	fi
3575	if [[ $localhost = ibmy ]]
3576	then
3577	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3578	else
3579	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3580	fi
3581
3582	else
3583	if [[ "$host_file" = "" ]]
3584	then
3585	printf "\n +++ no hostfile given in configuration file"
3586	locat=config_file
3587	exit
3588	else
3589	eval host_file=$host_file
3590	fi
3591	export MP_HOSTFILE=$host_file
3592	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3593	fi
3594	fi
3595	elif [[ $host = nech \|\| $host = necriam ]]
3596	then
3597	(( ii = nodes ))
3598	if [[ $ii = 1 ]]
3599	then
3600	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3601	export MPIPROGINF=YES
3602	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3603	echo "*** execution on single node with mpirun"
3604	mpirun -np $numprocs ./a.out $ROPTS
3605	else
3606	(( i = 0 ))
3607	while (( i < ii ))
3608	do
3609	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3610	(( i = i + 1 ))
3611	done
3612
3613	echo "#!/bin/sh" > mpi_exec_shell
3614	echo " " >> mpi_exec_shell
3615	echo "set -u" >> mpi_exec_shell
3616	echo "F_ERRCNT=0" >> mpi_exec_shell
3617	echo "MPIPROGINV=YES" >> mpi_exec_shell
3618	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3619	echo "cpurest=$cpurest" >> mpi_exec_shell
3620	echo "fname=$fname" >> mpi_exec_shell
3621	echo "localhost=$localhost" >> mpi_exec_shell
3622	echo "return_addres=$return_addres" >> mpi_exec_shell
3623	echo "return_username=$return_username" >> mpi_exec_shell
3624	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3625	echo "write_binary=$write_binary" >> mpi_exec_shell
3626	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3627	echo " " >> mpi_exec_shell
3628	echo "export F_ERRCNT" >> mpi_exec_shell
3629	echo "export MPIPROGINV" >> mpi_exec_shell
3630	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3631	echo "export cpurest" >> mpi_exec_shell
3632	echo "export fname" >> mpi_exec_shell
3633	echo "export localhost" >> mpi_exec_shell
3634	echo "export return_addres" >> mpi_exec_shell
3635	echo "export return_username" >> mpi_exec_shell
3636	echo "export tasks_per_node" >> mpi_exec_shell
3637	echo "export write_binary" >> mpi_exec_shell
3638	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3639	echo " " >> mpi_exec_shell
3640	echo "exec ./a.out" >> mpi_exec_shell
3641
3642	chmod u+x mpi_exec_shell
3643	export MPIPROGINF=YES
3644	mpirun -f multinode_config &
3645	wait
3646
3647	fi
3648	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3649	then
3650
3651	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3652	# DOES NOT EXIST
3653	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3654	then
3655	if [[ -f $hostfile ]]
3656	then
3657	cp $hostfile hostfile
3658	(( ii = $numprocs / $threads_per_task ))
3659	else
3660	(( ii = 1 ))
3661	while (( ii <= $numprocs / $threads_per_task ))
3662	do
3663	echo $localhost_realname >> hostfile
3664	(( ii = ii + 1 ))
3665	done
3666	fi
3667	eval zeile=\"`head -n $ii hostfile`\"
3668	printf "\n *** running on: $zeile"
3669	fi
3670
3671	(( ii = $numprocs / $threads_per_task ))
3672	export OMP_NUM_THREADS=$threads_per_task
3673	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3674	if [[ $threads_per_task != 1 ]]
3675	then
3676	# increase stack size to unlimited, because large runs
3677	# may abort otherwise
3678	ulimit -Ss unlimited
3679	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3680	fi
3681	if [[ $run_coupled_model = false ]]
3682	then
3683	if [[ "$ocean_file_appendix" = true ]]
3684	then
3685	echo "precursor_ocean" > runfile_atmos
3686	else
3687	echo "precursor_atmos" > runfile_atmos
3688	fi
3689	printf "\n\n"
3690	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3691	then
3692	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3693	then
3694	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3695	# export MPI_DSM_DISTRIBUTE=1
3696	# MPI_DSM_CPULIST: pin MPI processes to cores
3697	if [[ $use_openmp = false ]]
3698	then
3699	if [[ "$sgi_feature" = ice2 ]]
3700	then
3701	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3702	else
3703	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3704	fi
3705	else
3706	unset MPI_DSM_CPULIST
3707	fi
3708	# MPI_IB_RAILS: use both IB rails on ICE2
3709	export MPI_BUFS_PER_HOST=512
3710	export MPI_IB_RAILS=2
3711	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3712	export MPI_CONNECTIONS_THRESHOLD=8192
3713	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3714	export MPI_TYPE_DEPTH=20
3715	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3716	export MPI_GROUP_MAX=64
3717	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3718	if [[ $use_openmp = true ]]
3719	then
3720	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3721	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3722	else
3723	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3724	fi
3725
3726	# next is test for openmp usage
3727	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3728	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3729	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3730	then
3731	export MV2_NUM_PORTS=2
3732	# The default setting of MV2_CPU_MAPPING gives best results
3733	# export MV2_ENABLE_AFFINITY=1
3734	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3735	# if [[ "$sgi_feature" = ice2 ]]
3736	# then
3737	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3738	# else
3739	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3740	# fi
3741	if [[ $use_openmp = true ]]
3742	then
3743	unset MV2_CPU_MAPPING
3744	export MV2_ENABLE_AFFINITY=0
3745	fi
3746	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3747	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3748	if [[ $use_openmp = true ]]
3749	then
3750	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3751	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3752	else
3753	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3754	fi
3755	elif [[ "$mpilib" = impi ]]
3756	then
3757	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3758	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3759	fi
3760	elif [[ $host = lccrayb ]]
3761	then
3762	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3763	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3764	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3765	elif [[ $host = lccrayf ]]
3766	then
3767	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3768	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3769	then
3770	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3771	elif [[ $host = lcflow ]]
3772	then
3773	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3774	elif [[ $host = lcsb ]]
3775	then
3776	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3777	elif [[ $host = lckiaps ]]
3778	then
3779	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3780	elif [[ $host = lckyu* ]]
3781	then
3782	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3783	else
3784	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3785	fi
3786	else
3787
3788	# currently there is no full MPI-2 support on ICE and XT4
3789	(( iia = $numprocs_atmos / $threads_per_task ))
3790	(( iio = $numprocs_ocean / $threads_per_task ))
3791	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3792	printf "\n using $coupled_mode coupling"
3793	printf "\n\n"
3794
3795	if [[ $coupled_mode = "mpi2" ]]
3796	then
3797	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3798	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3799	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3800	then
3801
3802	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3803	then
3804	# export MPI_LAUNCH_TIMEOUT=360
3805	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3806	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3807	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3808	then
3809	# ulimit -s 300000 # A too large stack size causes problems
3810	# export MV2_NUM_PORTS=2
3811	# export MV2_CPU_MAPPING=0:1:2:3
3812	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3813	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3814	fi
3815
3816	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3817	then
3818
3819	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3820	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3821
3822	else
3823	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3824	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3825	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3826	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3827	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3828	fi
3829	wait
3830
3831	else
3832
3833	echo "coupled_run $iia $iio" > runfile_atmos
3834	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3835	then
3836
3837	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3838	then
3839	# export MPI_LAUNCH_TIMEOUT=360
3840	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3841	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3842	then
3843	# ulimit -s 300000 # A too large stack size causes problems
3844	# export MV2_NUM_PORTS=2
3845	# export MV2_CPU_MAPPING=0:1:2:3
3846	mpiexec ./a.out $ROPTS < runfile_atmos
3847	fi
3848
3849	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3850	then
3851
3852	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3853
3854	elif [[ $host = lck \|\| $host = lckordi ]]
3855	then
3856
3857	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3858
3859	elif [[ $host = lckyu* ]]
3860	then
3861
3862	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3863
3864	fi
3865	wait
3866	fi
3867
3868	fi
3869	elif [[ $host = lckyoto ]]
3870	then
3871	set -xv
3872	export P4_RSHCOMMAND=plesh
3873	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3874	if [[ "$ENVIRONMENT" = BATCH ]]
3875	then
3876	if [[ "$cond2" = fujitsu ]]
3877	then
3878	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3879	elif [[ "cond2" = pgi ]]
3880	then
3881	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3882	else
3883	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3884	fi
3885	else
3886	if [[ "$cond2" = "" ]]
3887	then
3888	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3889	else
3890	mpirun -np $numprocs ./a.out $ROPTS
3891	fi
3892	fi
3893	set +xv
3894	elif [[ $host = lctit ]]
3895	then
3896	export OMP_NUM_THREADS=$threads_per_task
3897	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3898	if [[ "$threads_per_task" != 1 ]]
3899	then
3900	export MV2_ENABLE_AFFINITY=0
3901	fi
3902	echo "----- PBS_NODEFILE content:"
3903	cat $PBS_NODEFILE
3904	echo "-----"
3905	(( ii = $numprocs / $threads_per_task ))
3906	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3907	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3908	else
3909	mpprun -n $numprocs a.out $ROPTS
3910	fi
3911	[[ $? != 0 ]] && execution_error=true
3912
3913
3914	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3915	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3916	then
3917	apprentice
3918	fi
3919	else
3920	a.out $ROPTS
3921	fi
3922	fi
3923	if [[ $? != 0 \|\| $execution_error = true ]]
3924	then
3925
3926	# ABBRUCH BEI LAUFZEITFEHLER
3927	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3928	printf "\n +++ runtime error occured"
3929	locat=execution
3930	exit
3931	else
3932	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3933	printf "\n$striche\n *** execution finished \n"
3934
3935	# Stop the dvr streaming server and process the dvr output in order
3936	# to create dvrs- and html-files containing all streams
3937	if [[ "$dvrserver_id" != "" ]]
3938	then
3939	kill $dvrserver_id
3940	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3941
3942	# If there is a directory, data have been output by the
3943	# streaming server. Otherwise, user has chosen dvrp_output=local
3944	if [[ -d DATA_DVR ]]
3945	then
3946
3947	# Add the current dvr configuration file to the dvr output
3948	# directory
3949	cp .dvrserver.config DATA_DVR
3950
3951	# Process the dvr output (option -s for also generating
3952	# sequence mode data)
3953	process_dvr_output -d DATA_DVR -f $fname -s
3954
3955	else
3956
3957	# Process the local output
3958	process_dvr_output -l -d DATA_DVR -f $fname
3959
3960	fi
3961
3962	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3963	then
3964
3965	# Process dvr output generated in local mode (dvrp_output=local)
3966	process_dvr_output -l -d DATA_DVR -f $fname
3967
3968	fi
3969	fi
3970
3971
3972
3973	# Call of combine_plot_fields in order to merge single files written
3974	# by each PE into one file.
3975	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3976	then
3977	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3978	printf "\n 2d- and/or 3d-data may be incomplete!"
3979	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3980	elif [[ "$combine_plot_fields" == true ]]
3981	then
3982	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3983	combine_plot_fields${block}.x
3984	else
3985	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3986	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3987	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3988	fi
3989
3990
3991
3992	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3993	(( i = 0 ))
3994	while (( i < ioc ))
3995	do
3996	(( i = i + 1 ))
3997	if (( i == 1 ))
3998	then
3999	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4000	fi
4001	printf "\n >>> ${out_command[$i]}"
4002	eval ${out_command[$i]}
4003	if (( i == ioc ))
4004	then
4005	printf "\n$striche\n"
4006	fi
4007	done
4008
4009
4010	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4011	if [[ $do_trace = true ]]
4012	then
4013	printf "\n\n"
4014	ls -al
4015	fi
4016
4017
4018
4019	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4020	(( i = 0 ))
4021	while (( i < iout ))
4022	do
4023	(( i = i + 1 ))
4024	if (( i == 1 ))
4025	then
4026	printf "\n\n *** saving OUTPUT-files:\n$striche"
4027	fi
4028
4029	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4030	files_for_pes=false; filetyp=file
4031	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4032	then
4033	files_for_pes=true; filetyp=directory
4034	actionout[$i]=""
4035	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4036	then
4037	actionout[$i]=""
4038	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4039	then
4040	files_for_pes=true; filetyp=directory
4041	actionout[$i]="ar"
4042	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4043	then
4044	actionout[$i]="ar"
4045	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4046	then
4047	files_for_pes=true; filetyp=directory
4048	actionout[$i]="fl"
4049	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4050	then
4051	actionout[$i]="fl"
4052	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4053	then
4054	files_for_pes=true; filetyp=directory
4055	actionout[$i]="tr"
4056	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4057	then
4058	actionout[$i]="tr"
4059	fi
4060
4061	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4062	then
4063	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4064	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4065	then
4066	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4067	else
4068
4069
4070	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4071	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4072	# REMOTE-RECHNUNGEN
4073	if [[ "${actionout[$i]}" = tr ]]
4074	then
4075	if [[ $localhost != $fromhost ]]
4076	then
4077	if [[ $files_for_pes = false ]]
4078	then
4079	cps=""
4080	cst=""
4081	else
4082	cps=-c
4083	cst="/"
4084	fi
4085	if [[ $localhost = nech ]]
4086	then
4087
4088	# TRANSFER IN EIGENSTAENDIGEM JOB
4089	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4090	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4091	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4092	if [[ $files_for_pes = false ]]
4093	then
4094	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4095	else
4096	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4097	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4098	fi
4099
4100	echo "set -x" > transfer_${localout[$i]}
4101	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4102
4103	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4104	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4105	printf "\n or higher cycle\n"
4106	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4107
4108	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4109
4110	if [[ $localhost = nech ]]
4111	then
4112	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4113	else
4114	if [[ "$LOGNAME" = b323013 ]]
4115	then
4116	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4117	else
4118	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4119	fi
4120	fi
4121
4122	else
4123
4124	# TRANSFER INNERHALB DIESES JOBS
4125	transfer_failed=false
4126	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4127	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4128	if [[ $localhost = lccrayb ]]
4129	then
4130	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4131	else
4132	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4133	fi
4134	[[ $? != 0 ]] && transfer_failed=true
4135
4136	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4137	# LOKALER MASCHINE ANLEGEN
4138	if [[ $transfer_failed = true ]]
4139	then
4140	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4141	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4142
4143	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4144	# ANLEGEN.
4145	eval local_catalog=${pathout[$i]}
4146	if [[ ! -d $local_catalog ]]
4147	then
4148	printf " *** local directory does not exist. Trying to create:\n"
4149	printf " $local_catalog \n"
4150	mkdir -p $local_catalog
4151	fi
4152	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4153	transfer_problems=true
4154	fi
4155	fi
4156	else
4157
4158	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4159	actionout[$i]=""
4160	fi
4161	fi
4162
4163
4164	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4165	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4166	# REMOTE-RECHNUNGEN
4167	if [[ "${actionout[$i]}" = tra ]]
4168	then
4169	if [[ $localhost != $fromhost ]]
4170	then
4171	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4172	then
4173
4174	# TRANSFER IN EIGENSTAENDIGEM JOB
4175	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4176	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4177	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4178	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4179
4180	echo "set -x" > transfer_${localout[$i]}
4181	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4182
4183	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4184	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4185	printf "\n or higher cycle\n"
4186	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4187
4188	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4189
4190	if [[ $localhost = nech ]]
4191	then
4192	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4193	else
4194	if [[ $LOGNAME = b323013 ]]
4195	then
4196	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4197	else
4198	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4199	fi
4200	fi
4201
4202	else
4203
4204	# TRANSFER INNERHALB DIESES JOBS
4205	transfer_failed=false
4206	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4207	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4208	if [[ $localhost = lccrayb ]]
4209	then
4210	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4211	else
4212	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4213	fi
4214	[[ $? != 0 ]] && transfer_failed=true
4215
4216	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4217	# LOKALER MASCHINE ANLEGEN
4218	if [[ $transfer_failed = true ]]
4219	then
4220	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4221	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4222
4223	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4224	# ANLEGEN
4225	eval local_catalog=${pathout[$i]}
4226	if [[ ! -d $local_catalog ]]
4227	then
4228	printf " *** local directory does not exist. Trying to create:\n"
4229	printf " $local_catalog \n"
4230	mkdir -p $local_catalog
4231	fi
4232
4233	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4234	transfer_problems=true
4235	fi
4236	fi
4237	else
4238
4239	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4240	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4241	actionout[$i]=a
4242	fi
4243	fi
4244
4245
4246	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4247	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4248	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4249	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4250	if [[ "${actionout[$i]}" = fl ]]
4251	then
4252	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4253	chmod g+rx $tmp_data_catalog
4254	if [[ $files_for_pes = false ]]
4255	then
4256	printf "\n >>> OUTPUT: ${localout[$i]} to"
4257	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4258	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4259	else
4260	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4261	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4262	mkdir $tmp_data_catalog/${frelout[$i]}
4263	cd ${localout[$i]}
4264	for file in $(ls *)
4265	do
4266	ln -f $file $tmp_data_catalog/${frelout[$i]}
4267	done
4268	cd $TEMPDIR
4269	fi
4270
4271
4272	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4273	if [[ $store_on_archive_system = true ]]
4274	then
4275
4276	if [[ $archive_system = asterix ]]
4277	then
4278	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4279	if [[ $files_for_pes = false ]]
4280	then
4281	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4282	else
4283	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4284	fi
4285	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4286	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4287	echo "then" >> archive_${frelout[$i]}
4288	echo " do_stageout=false" >> archive_${frelout[$i]}
4289	echo "else" >> archive_${frelout[$i]}
4290	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4291	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4292	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4293	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4294	if [[ $files_for_pes = false ]]
4295	then
4296	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4297	else
4298	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4299	fi
4300	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4301	echo "fi" >> archive_${frelout[$i]}
4302	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4303	elif [[ $archive_system = DMF ]]
4304	then
4305	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4306	if [[ $files_for_pes = false ]]
4307	then
4308	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4309	locat=DMF
4310	exit
4311	else
4312	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4313	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4314	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4315	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4316	fi
4317	elif [[ $archive_system = tivoli ]]
4318	then
4319	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4320	if [[ $files_for_pes = false ]]
4321	then
4322	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4323	echo "set -x" >> archive_${frelout[$i]}
4324	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4325	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4326	else
4327
4328	echo "set -x" >> archive_${frelout[$i]}
4329	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4330	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4331	cd $tmp_data_catalog
4332	all_files=`ls -1 ${frelout[$i]}/*`
4333	cd - > /dev/null
4334	(( inode = 0 ))
4335	(( tp1 = tasks_per_node + 1 ))
4336	while (( inode < nodes ))
4337	do
4338	# echo "*** all_files = \"$all_files\" "
4339	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4340	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4341	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4342	# echo "*** files = \"$files\" "
4343	# echo "*** all_files = \"$all_files\" "
4344	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4345	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4346	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4347	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4348	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4349	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4350	(( inode = inode + 1 ))
4351	done
4352	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4353	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4354	fi
4355	elif [[ $archive_system = ut ]]
4356	then
4357	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4358	if [[ $files_for_pes = false ]]
4359	then
4360	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4361	echo "set -x" >> archive_${frelout[$i]}
4362	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4363	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4364	else
4365
4366	echo "set -x" >> archive_${frelout[$i]}
4367	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4368	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4369	cd $tmp_data_catalog
4370	all_files=`ls -1 ${frelout[$i]}/*`
4371	cd - > /dev/null
4372	(( inode = 0 ))
4373	(( tp1 = tasks_per_node + 1 ))
4374	while (( inode < nodes ))
4375	do
4376	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4377	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4378	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4379	(( inode = inode + 1 ))
4380	done
4381	fi
4382	elif [[ $archive_system = none ]]
4383	then
4384	printf " +++ archiving on $localhost not available!\n"
4385	fi
4386
4387	if [[ $archive_system != none ]]
4388	then
4389	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4390	then
4391	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4392	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4393	elif [[ $localhost = nech ]]
4394	then
4395	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4396	fi
4397	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4398	fi
4399	else
4400	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4401	fi
4402
4403
4404	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4405	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4406	if [[ $files_for_pes = false ]]
4407	then
4408	cat /dev/null > ${pathout[$i]}
4409	else
4410	mkdir -p ${pathout[$i]}
4411	fi
4412
4413	fi
4414
4415
4416	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4417	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4418	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4419	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4420	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4421	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4422	if [[ "${actionout[$i]}" = ar ]]
4423	then
4424	if [[ $files_for_pes = false ]]
4425	then
4426	printf "\n >>> OUTPUT: ${localout[$i]} to"
4427	printf "\n ${pathout[$i]}"
4428	printf "\n File will be copied to archive-system ($archive_system) !\n"
4429	else
4430	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4431	printf "\n ${pathout[$i]}"
4432	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4433	fi
4434	mv ${localout[$i]} ${frelout[$i]}
4435
4436	file_saved=false
4437
4438	if [[ $archive_system = asterix ]]
4439	then
4440	do_stageout=true
4441	(( stageout_anz = 0 ))
4442	while [[ $do_stageout = true ]]
4443	do
4444	if [[ $files_for_pes = false ]]
4445	then
4446	stageout ${frelout[$i]} > STAGE_OUTPUT
4447	else
4448	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4449	fi
4450	cat STAGE_OUTPUT
4451	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4452	then
4453	file_saved=true
4454	do_stageout=false
4455	else
4456	if [[ $files_for_pes = false ]]
4457	then
4458	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4459	else
4460	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4461	fi
4462	(( stageout_anz = stageout_anz + 1 ))
4463	if (( stageout_anz == 10 ))
4464	then
4465	printf "\n +++ stoped after 10 unsuccessful tries!"
4466	archive_save=false
4467	do_stageout=false
4468	else
4469	printf "\n *** new try to store on archive after 15 min:"
4470	sleep 900
4471	fi
4472	fi
4473	done
4474	elif [[ $archive_system = DMF ]]
4475	then
4476	if [[ $files_for_pes = false ]]
4477	then
4478	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4479	locat=DMF
4480	exit
4481	else
4482	rm -rf $ARCHIVE/${frelout[$i]}
4483	cp -r ${frelout[$i]} $ARCHIVE
4484	fi
4485	file_saved=true
4486	elif [[ $archive_system = tivoli ]]
4487	then
4488	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4489	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4490	# GELEGT WERDEN
4491	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4492	chmod g+rx $tmp_data_catalog
4493	if [[ $files_for_pes = false ]]
4494	then
4495	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4496	else
4497	mkdir $tmp_data_catalog/${frelout[$i]}
4498	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4499	fi
4500
4501	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4502	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4503	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4504	if [[ $files_for_pes = false ]]
4505	then
4506	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4507	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4508	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4509	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4510	else
4511	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4512	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4513	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4514	fi
4515
4516	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4517	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4518	file_saved=true
4519
4520	elif [[ $archive_system = ut ]]
4521	then
4522	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4523	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4524	# GELEGT WERDEN
4525	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4526	chmod g+rx $tmp_data_catalog
4527	if [[ $files_for_pes = false ]]
4528	then
4529	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4530	else
4531	mkdir $tmp_data_catalog/${frelout[$i]}
4532	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4533	fi
4534
4535	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4536	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4537	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4538	if [[ $files_for_pes = false ]]
4539	then
4540	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4541	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4542	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4543	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4544	else
4545	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4546	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4547	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4548	fi
4549
4550	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4551	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4552	file_saved=true
4553
4554	else
4555	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4556	archive_save=false
4557	fi
4558	if [[ $file_saved = true ]]
4559	then
4560	if [[ $files_for_pes = false ]]
4561	then
4562	cat /dev/null > ${pathout[$i]}
4563	else
4564	mkdir -p ${pathout[$i]}
4565	fi
4566	fi
4567	fi
4568
4569	# APPEND AUF LOKALER MASCHINE
4570	if [[ "${actionout[$i]}" = "a" ]]
4571	then
4572	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4573	then
4574	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4575	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4576	else
4577	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4578	cat ${localout[$i]} >> ${pathout[$i]}
4579	fi
4580	fi
4581
4582	# KOPIEREN AUF LOKALER MASCHINE
4583	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4584	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4585	then
4586
4587	# KOPIEREN AUF EINPROZESSORMASCHINE
4588	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4589	then
4590	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4591	if [[ $link_local_output = true ]]
4592	then
4593	printf " using ln -f\n"
4594	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4595	fi
4596	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4597	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4598	then
4599	if [[ $link_local_output = true ]]
4600	then
4601	printf " ln failed, using cp...\n"
4602	fi
4603	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4604	fi
4605	else
4606	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4607	if [[ $link_local_output = true ]]
4608	then
4609	printf " using ln -f\n"
4610	ln -f ${localout[$i]} ${pathout[$i]}
4611	fi
4612	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4613	if [[ ! -f "${pathout[$i]}" ]]
4614	then
4615	if [[ $link_local_output = true ]]
4616	then
4617	printf " ln failed, using cp...\n"
4618	fi
4619	cp ${localout[$i]} ${pathout[$i]}
4620	fi
4621	fi
4622
4623	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4624	then
4625
4626	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4627	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4628	# WIRD DANN KOPIERT
4629	# PER MOVE UMBENANNT WERDEN
4630	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4631	if [[ $link_local_output = true ]]
4632	then
4633	printf " using ln -f\n"
4634	mkdir ${pathout[$i]}
4635	cd ${localout[$i]}
4636	for file in $(ls *)
4637	do
4638	ln -f $file ${pathout[$i]}
4639	done
4640	cd $TEMPDIR
4641	fi
4642	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4643	if [[ ! -f "${pathout[$i]}/_0000" ]]
4644	then
4645	if [[ $link_local_output = true ]]
4646	then
4647	printf " ln failed for .../_0000, using cp...\n"
4648	fi
4649	cp -r ${localout[$i]} ${pathout[$i]}
4650	fi
4651
4652	fi
4653	fi
4654	done
4655	if (( i != 0 ))
4656	then
4657	if [[ $transfer_problems = true ]]
4658	then
4659	printf "\n$striche\n *** OUTPUT-files saved"
4660	printf "\n +++ WARNING: some data transfers failed! \n"
4661	else
4662	printf "\n$striche\n *** all OUTPUT-files saved \n"
4663	fi
4664	fi
4665
4666
4667	# EVENTUELL FOLGEJOB STARTEN
4668	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4669	if [[ -f CONTINUE_RUN ]]
4670	then
4671
4672	if [[ $archive_save = true ]]
4673	then
4674
4675	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4676	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4677	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4678	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4679	# HANDEN
4680	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4681	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4682	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4683	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4684	then
4685	mc=`echo $mc \| sed 's/#/f/g'`
4686	fi
4687
4688
4689	# JOB STARTEN
4690	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4691	echo " $mc"
4692	printf "\n$striche\n"
4693	if [[ $localhost != $fromhost ]]
4694	then
4695
4696	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4697	then
4698	echo "*** ssh will be used to initiate restart-runs!"
4699	echo " return_addres=\"$return_addres\" "
4700	echo " return_username=\"$return_username\" "
4701	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4702	then
4703	if [[ $localhost = ibmh ]]
4704	then
4705	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4706	elif [[ $localhost = lccrayb ]]
4707	then
4708	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4709	else
4710	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4711	fi
4712	else
4713	if [[ $localhost = ibmkisti ]]
4714	then
4715	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4716	elif [[ $localhost = lcflow ]]
4717	then
4718	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4719	elif [[ $localhost = lccrayb ]]
4720	then
4721	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4722	else
4723	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4724	fi
4725	fi
4726	else
4727	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4728	locat=restart; exit
4729	fi
4730
4731	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4732	# DER AKTUELLE JOB ENDET
4733	if [[ $queue = special1q ]]
4734	then
4735	sleep 120
4736	else
4737	sleep 30
4738	fi
4739
4740	else
4741
4742	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4743	# RUFEN WERDEN, AUSSER AUF lcfimm
4744	cd $LOCAL_PWD
4745	if [[ $localhost = lcfimm ]]
4746	then
4747	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4748	elif [[ $localhost = lckyuh ]]
4749	then
4750	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4751	printf "\n please restart job manually using command:\n"
4752	printf "\n \"$mc\" "
4753	else
4754	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4755	fi
4756	cd - > /dev/null
4757	fi
4758	if [[ $localhost = lckyuh ]]
4759	then
4760	printf "\n$striche\n *** restart-run to be initiated manually\n"
4761	else
4762	printf "\n$striche\n *** restart-run initiated \n"
4763	fi
4764
4765
4766	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4767	# GEHOLT WORDEN SIND, LOESCHEN
4768	(( i = 0 ))
4769	while (( i < iin ))
4770	do
4771	(( i = i + 1 ))
4772	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4773	then
4774	rm -r $tmp_data_catalog/${frelin[$i]}
4775	fi
4776	done
4777
4778	else
4779
4780	printf "\n +++ no restart-run possible, since errors occured"
4781	printf "\n during the archive process"
4782	fi
4783
4784	fi
4785
4786
4787
4788	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4789	if [[ "$email_notification" != "none" ]]
4790	then
4791
4792	if [[ $localhost != $fromhost ]]
4793	then
4794	if [[ -f CONTINUE_RUN ]]
4795	then
4796	echo "PALM restart run necessary" > email_text
4797	echo "description header of actual run:" >> email_text
4798	cat CONTINUE_RUN >> email_text
4799	echo "mrun-command to restart:" >> email_text
4800	echo "$mc" >> email_text
4801	else
4802	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4803	fi
4804	mail $email_notification < email_text
4805	printf "\n *** email notification sent to \"$email_notification\" "
4806	fi
4807	fi
4808
4809
4810
4811	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4812	cd $HOME
4813	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4814
4815	else
4816
4817
4818	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4819	# CHENDE AKTIONEN DURCHGEFUEHRT
4820
4821	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4822	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4823	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4824	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4825	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4826	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4827	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4828	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4829	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4830	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4831	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4832	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4833	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4834	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4835	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4836	if [[ $use_openmp = true ]]
4837	then
4838	mrun_com=${mrun_com}" -O $threads_per_task"
4839	fi
4840	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4841	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4842	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4843	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4844	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4845	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4846	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4847	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4848	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4849	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4850	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4851	if [[ $do_remote = true ]]
4852	then
4853	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4854	fi
4855
4856
4857	# create executable for batch job
4858	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4859	then
4860
4861	printf "\n *** creating the executable for batch job\n"
4862
4863	# method only works for batch jobs on local hosts
4864	if [[ $host != $localhost ]]
4865	then
4866	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4867	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4868	locat=create_executable; exit
4869	fi
4870
4871	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4872	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4873
4874	cp $make_depository .
4875	tar -xf $make_depository > /dev/null 2>&1
4876	cp ../* . > /dev/null 2>&1
4877
4878	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4879
4880	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4881	then
4882	printf "\n +++ error occured while compiling or linking"
4883	locat=compile
4884	exit
4885	fi
4886
4887	mv a.out ..
4888	cd - > /dev/null 2>&1
4889	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4890
4891	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4892
4893	fi
4894
4895
4896	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4897	jobfile=jobfile.$RANDOM
4898
4899
4900	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4901	echo "mkdir $TEMPDIR" >> $jobfile
4902	echo "cd $TEMPDIR" >> $jobfile
4903
4904
4905	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4906	if [[ $do_trace = true ]]
4907	then
4908	echo "set -x" >> $jobfile
4909	else
4910	echo "set +vx" >> $jobfile
4911	fi
4912
4913
4914	# initialize the environment and load modules
4915	if [[ "$init_cmds" != "" ]]
4916	then
4917	echo "$init_cmds" >> $jobfile
4918	fi
4919	if [[ "$module_calls" != "" ]]
4920	then
4921	echo "$module_calls" >> $jobfile
4922	fi
4923
4924
4925	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4926	# DATEI FUER DEN JOB
4927	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
4928	then
4929
4930	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4931	# KOPIEREN
4932	if [[ $restart_run != true ]]
4933	then
4934	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4935	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4936	fi
4937
4938	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4939	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4940	echo "set -x" >> $jobfile
4941	if [[ $host = $localhost ]]
4942	then
4943
4944	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4945	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4946	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4947
4948	else
4949	if [[ $host = ibmkisti ]]
4950	then
4951	# on KISTI's IBM firewall is only opened on interactive node
4952	echo "localdir=\`pwd\`" >> $jobfile
4953	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4954	elif [[ $host = lccrayb ]]
4955	then
4956	echo "localdir=\`pwd\`" >> $jobfile
4957	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4958	else
4959	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4960	fi
4961	fi
4962	echo "export SOURCES_COMPLETE=true" >> $jobfile
4963
4964	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4965	# ARBEITSVERZEICHNIS VERSCHIEBEN
4966	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4967	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4968	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4969	echo "execute_mrun=true" >> $jobfile
4970	echo " " >> $jobfile
4971
4972	else
4973
4974	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4975	# SOWIE GEGEBENENFALLS DES MAKEFILES
4976	if [[ $do_compile = true ]]
4977	then
4978
4979	source_catalog=SOURCES_FOR_RUN_$fname
4980
4981	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4982	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4983	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4984	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4985	echo "export SOURCES_COMPLETE=true" >> $jobfile
4986	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4987
4988	for filename in $source_list
4989	do
4990	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4991	echo "cat > $filename << \"%END%\"" >> $jobfile
4992	cat $source_catalog/$filename >> $jobfile
4993	echo " " >> $jobfile
4994	echo "%END%" >> $jobfile
4995	echo " " >> $jobfile
4996	done
4997
4998	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4999	echo "cat > Makefile << \"%END%\"" >> $jobfile
5000	cat $source_catalog/Makefile >> $jobfile
5001	echo " " >> $jobfile
5002	echo "%END%" >> $jobfile
5003	echo " " >> $jobfile
5004
5005	echo "cd - > /dev/null" >> $jobfile
5006
5007	fi
5008
5009
5010	# ABSPEICHERN DER KONFIGURATIONSDATEI
5011	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5012	# Lines with #$ coming from the svn keyword substitution are
5013	# removed from the config file in order to avoid problems
5014	# with the SGE batch system
5015	echo "cat > $config_file << \"%END%\"" >> $jobfile
5016	if [[ $host = lckyuh ]]
5017	then
5018	# no cross compiler on compute node
5019	sed 's/frtpx/frt/g' $config_file >> $jobfile
5020	else
5021	sed 's/#$.*//g' $config_file >> $jobfile
5022	fi
5023	echo "%END%" >> $jobfile
5024	echo " " >> $jobfile
5025
5026
5027	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5028	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5029	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5030	if [[ $host = lckyuh ]]
5031	then
5032	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5033	else
5034	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5035	fi
5036	echo "%END%" >> $jobfile
5037	echo "chmod u+x $mrun_script_name" >> $jobfile
5038	echo "execute_mrun=true" >> $jobfile
5039	echo " " >> $jobfile
5040
5041	fi
5042
5043
5044	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5045	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5046	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5047	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5048	if [[ $do_remote = true ]]
5049	then
5050	(( i = 0 ))
5051	while (( i < iin ))
5052	do
5053	(( i = i + 1 ))
5054	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5055	if [[ "${transin[$i]}" = job ]]
5056	then
5057	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5058	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5059	echo " " >> $jobfile
5060	echo "%END%" >> $jobfile
5061	else
5062	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5063	fi
5064
5065	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5066	echo "if [[ \$? = 1 ]]" >> $jobfile
5067	echo "then" >> $jobfile
5068	echo " echo \" \" " >> $jobfile
5069	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5070	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5071	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5072	echo " execute_mrun=false" >> $jobfile
5073	echo "fi" >> $jobfile
5074	done
5075	fi
5076
5077	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5078	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5079	echo "LOCAL_PWD=$working_directory" >> $jobfile
5080	echo "export LOCAL_PWD" >> $jobfile
5081
5082	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5083	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5084	echo "export LOCAL_MRUN_PATH" >> $jobfile
5085
5086	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5087	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5088	then
5089	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5090	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5091	then
5092	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5093	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5094	fi
5095
5096	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5097	echo "set -x" >> $jobfile
5098	echo "queue=$queue" >> $jobfile
5099	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5100	echo 'ls -al; echo `pwd`' >> $jobfile
5101	echo "cd \$HOME" >> $jobfile
5102	echo "rm -rf $TEMPDIR" >> $jobfile
5103
5104
5105
5106
5107	# JOB PER SUBJOB STARTEN
5108	if [[ $silent = false ]]
5109	then
5110	printf "\n "
5111	else
5112	printf "\n\n"
5113	fi
5114
5115	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5116	rm -rf $jobfile
5117
5118
5119	fi # ENDE REMOTE-TEIL
5120
5121
5122
5123	# ENDE DER PROZEDUR

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